AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene071366

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene071366.t1 MTR_1g103100 97.701 261 6 0 1 261 1 261 0.0 530
MS.gene071366.t1 MTR_3g012040 95.785 261 11 0 1 261 1 261 0.0 497
MS.gene071366.t1 MTR_5g006440 94.636 261 14 0 1 261 1 261 9.71e-179 492
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene071366.t1 AT3G04840 85.115 262 38 1 1 261 1 262 1.68e-163 453
MS.gene071366.t1 AT4G34670 85.496 262 37 1 1 261 1 262 4.36e-163 452

Find 78 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCAAACTTGGGAGCTTTA+AGG 0.168578 2.1:+34115834 None:intergenic
AATATCATACCAATCCTTCT+TGG 0.295389 2.1:+34117829 None:intergenic
ATTTGGTCCTTGTAGGTTCA+TGG 0.297913 2.1:-34115406 MS.gene071366:intron
GAAGGATTGGTATGATATTA+AGG 0.312711 2.1:-34117825 MS.gene071366:CDS
CTGACTAGATTGTGCATAAC+AGG 0.339955 2.1:+34116250 None:intergenic
AAAGCTCCCAAGTTTGATCT+TGG 0.357514 2.1:-34115830 MS.gene071366:CDS
TAAGAACAAGCGGATCTCTA+AGG 0.365175 2.1:-34117982 MS.gene071366:CDS
GTTTGATCTTGGAAAATTGA+TGG 0.369245 2.1:-34115819 MS.gene071366:CDS
AAATTCATTCCCGAGATGAT+TGG 0.381702 2.1:-34115926 MS.gene071366:CDS
GGGACGAAGACCATGCATTC+AGG 0.393353 2.1:-34116576 MS.gene071366:CDS
ATCCTGTGATTTGAAGGAAT+TGG 0.402781 2.1:-34115954 MS.gene071366:CDS
GACCCTCGTGTCTCGTACTC+AGG 0.406163 2.1:-34117768 MS.gene071366:CDS
TACCAATCCTTCTTGGCAAA+TGG 0.412105 2.1:+34117836 None:intergenic
TAGAGTGTTTGAGGTTTCAT+TGG 0.413434 2.1:-34116611 MS.gene071366:CDS
GTTTCATTGGCTGATCTTCA+AGG 0.434675 2.1:-34116598 MS.gene071366:CDS
TGCTGATCCATTTGCCAAGA+AGG 0.436339 2.1:-34117843 MS.gene071366:CDS
AATTCATTCCCGAGATGATT+GGG 0.437177 2.1:-34115925 MS.gene071366:CDS
AGCATCATCCTGTGATTTGA+AGG 0.439297 2.1:-34115960 MS.gene071366:CDS
TACCAAGAGGAGAGCTAACC+AGG 0.440122 2.1:-34116282 MS.gene071366:CDS
TCCGTCACCATTTCATCAGC+AGG 0.444686 2.1:+34115346 None:intergenic
ACTCAAGCATAGAGTGTTTG+AGG 0.454600 2.1:-34116620 MS.gene071366:CDS
ACCATGCATTCAGGAAGATT+AGG 0.462005 2.1:-34116567 MS.gene071366:CDS
ATCCATTTGCCAAGAAGGAT+TGG 0.465718 2.1:-34117838 MS.gene071366:CDS
ATCTCCTTCCCAATCATCTC+GGG 0.483111 2.1:+34115917 None:intergenic
GAGGAACCTACTGAAATTGT+TGG 0.484047 2.1:-34115325 MS.gene071366:CDS
TGTTCAGATCCGTAGGAAGA+TGG 0.490433 2.1:-34116002 MS.gene071366:intron
CACCTGGTTAGCTCTCCTCT+TGG 0.502596 2.1:+34116280 None:intergenic
AACTGACAAACTGAGGTCAT+TGG 0.506332 2.1:-34116390 MS.gene071366:CDS
CGGATCTCTAAGGGGAAGAA+AGG 0.516719 2.1:-34117972 MS.gene071366:CDS
AAGAACAAGCGGATCTCTAA+GGG 0.521243 2.1:-34117981 MS.gene071366:CDS
CTTGTTCTTACCAACGGCCA+TGG 0.523346 2.1:+34117995 None:intergenic
ACCTAATCTTCCTGAATGCA+TGG 0.523822 2.1:+34116566 None:intergenic
TTTCATTGGCTGATCTTCAA+GGG 0.523908 2.1:-34116597 MS.gene071366:CDS
TCATCTCGGGAATGAATTTG+CGG 0.528925 2.1:+34115930 None:intergenic
AGAGAGGCCTGCTGATGAAA+TGG 0.532099 2.1:-34115353 MS.gene071366:CDS
TCTTGCCGACATTCTTCACC+TGG 0.534041 2.1:+34117789 None:intergenic
AATCTCCTTCCCAATCATCT+CGG 0.535678 2.1:+34115916 None:intergenic
TTGAGAGCTGAAGATGTTCA+AGG 0.537527 2.1:-34116544 MS.gene071366:CDS
CGGATGAACACATTCTGCAA+GGG 0.539130 2.1:+34115869 None:intergenic
TCAAATCACAGGATGATGCT+TGG 0.544201 2.1:+34115963 None:intergenic
CATAACAGGTCCTCTTCACC+TGG 0.545447 2.1:+34116264 None:intergenic
GGAGAGCTAACCAGGTGAAG+AGG 0.557404 2.1:-34116274 MS.gene071366:CDS
TGAGGTCATTGGTGCGCAAG+TGG 0.557496 2.1:-34116379 MS.gene071366:CDS
GAATGACAGATTGCTTCAGA+TGG 0.560187 2.1:-34116643 MS.gene071366:intron
CTCTGAGGATGTTGGCACAA+AGG 0.562498 2.1:-34115377 MS.gene071366:CDS
CTTTATTTGTTCAGATCCGT+AGG 0.563835 2.1:-34116009 MS.gene071366:intron
GATCCGCTTGTTCTTACCAA+CGG 0.569816 2.1:+34117989 None:intergenic
GACCAATTCCTTCAAATCAC+AGG 0.574407 2.1:+34115952 None:intergenic
TCGGATGAACACATTCTGCA+AGG 0.575354 2.1:+34115868 None:intergenic
ACAATCTAGTCAGATTAGAC+AGG 0.580594 2.1:-34116240 MS.gene071366:intron
CAAGCTCCAACAATTTCAGT+AGG 0.582102 2.1:+34115319 None:intergenic
GGAGATTACTCTGAGGATGT+TGG 0.587473 2.1:-34115385 MS.gene071366:CDS
TTCTTCACCTGGAAAACTGA+AGG 0.588083 2.1:+34117800 None:intergenic
TGATCTCAACCATCTTCCTA+CGG 0.590794 2.1:+34115993 None:intergenic
TTCATTGGCTGATCTTCAAG+GGG 0.595752 2.1:-34116596 MS.gene071366:CDS
CAGTAGTCTTGACATCCACA+TGG 0.596992 2.1:+34116339 None:intergenic
ACTCTGCAAACCATGGCCGT+TGG 0.603780 2.1:-34118005 None:intergenic
CATTCCCGAGATGATTGGGA+AGG 0.605231 2.1:-34115921 MS.gene071366:CDS
TGATCTTGGAAAATTGATGG+AGG 0.612140 2.1:-34115816 MS.gene071366:intron
TGAGAGCTGAAGATGTTCAA+GGG 0.612312 2.1:-34116543 MS.gene071366:CDS
ACCCTCGTGTCTCGTACTCA+GGG 0.615233 2.1:-34117767 MS.gene071366:CDS
ATCTCTAAGGGGAAGAAAGG+TGG 0.621403 2.1:-34117969 MS.gene071366:CDS
AACTCTTGTTGAAGCCCATG+TGG 0.622205 2.1:-34116354 MS.gene071366:CDS
GTCTCGTACTCAGGGTACCA+AGG 0.623684 2.1:-34117759 MS.gene071366:intron
TGGCCGTTGGTAAGAACAAG+CGG 0.624911 2.1:-34117992 MS.gene071366:CDS
GCCTGCTGATGAAATGGTGA+CGG 0.629382 2.1:-34115347 MS.gene071366:CDS
GGATGAACACATTCTGCAAG+GGG 0.631103 2.1:+34115870 None:intergenic
CAAGGGGTAAATACTAGACG+TGG 0.633754 2.1:+34115886 None:intergenic
CTACTGATAATTACACATTG+AGG 0.636083 2.1:-34116322 MS.gene071366:CDS
TTTGCATTGGCTTTACCAAG+AGG 0.642280 2.1:-34116295 MS.gene071366:CDS
TACCCTGAGTACGAGACACG+AGG 0.648373 2.1:+34117765 None:intergenic
ATGTTGGCACAAAGGTAGAG+AGG 0.654238 2.1:-34115369 MS.gene071366:CDS
ATTTCACAACTGACAAACTG+AGG 0.681977 2.1:-34116397 MS.gene071366:CDS
TGCTGATGAAATGGTGACGG+AGG 0.686062 2.1:-34115344 MS.gene071366:CDS
ACCCTGAGTACGAGACACGA+GGG 0.700568 2.1:+34117766 None:intergenic
AGTAGTCTTGACATCCACAT+GGG 0.706350 2.1:+34116340 None:intergenic
AGAACAAGCGGATCTCTAAG+GGG 0.721950 2.1:-34117980 MS.gene071366:CDS
GGTTCATGGAGATTACTCTG+AGG 0.741731 2.1:-34115392 MS.gene071366:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATATTATGAAAATAAATAT+TGG + chr2.1:34117564-34117583 None:intergenic 10.0%
!!! GATTTTTTTTTTTTATTTAC+AGG - chr2.1:34116885-34116904 MS.gene071366:intron 10.0%
!!! TTAGTATAAAAATTGTTTTA+TGG + chr2.1:34116134-34116153 None:intergenic 10.0%
!!! TTTTTTTTTTTTATTTACAG+GGG - chr2.1:34116887-34116906 MS.gene071366:intron 10.0%
!! GTAAAAAATGAAAATTTGAA+TGG + chr2.1:34115405-34115424 None:intergenic 15.0%
!!! GTTTTTTGTTTTTTGTAATT+TGG - chr2.1:34115594-34115613 MS.gene071366:intron 15.0%
!! AAAAAAATGTTGTCAAATAG+CGG + chr2.1:34116095-34116114 None:intergenic 20.0%
!! ATATATAAAGAAGAAATCAC+TGG - chr2.1:34117214-34117233 MS.gene071366:intron 20.0%
!! ATATTCAATGAAAGTAAGAT+AGG + chr2.1:34115663-34115682 None:intergenic 20.0%
!! CTTAATGCTTATTTAGAAAA+TGG - chr2.1:34116638-34116657 MS.gene071366:intron 20.0%
!!! AAAATCTTTTGACAAATTTC+TGG - chr2.1:34116792-34116811 MS.gene071366:intron 20.0%
!!! AAATCTTTTGACAAATTTCT+GGG - chr2.1:34116793-34116812 MS.gene071366:intron 20.0%
!!! ATTTGAATGGATTTTGAAAA+AGG + chr2.1:34115392-34115411 None:intergenic 20.0%
!!! TTTGAATGGATTTTGAAAAA+GGG + chr2.1:34115391-34115410 None:intergenic 20.0%
! AAAAAATGTTGTCAAATAGC+GGG + chr2.1:34116094-34116113 None:intergenic 25.0%
! AAAAACAAAAAACATGACAG+AGG + chr2.1:34115587-34115606 None:intergenic 25.0%
! AAACCATTATAGAAAATGCA+AGG + chr2.1:34115434-34115453 None:intergenic 25.0%
! AACAGCATTTCATAAAAGAA+AGG + chr2.1:34117194-34117213 None:intergenic 25.0%
! AATAATCTGAAGGTTGTTTA+TGG + chr2.1:34117703-34117722 None:intergenic 25.0%
! ACAACATTATGACAAATAGA+TGG + chr2.1:34116836-34116855 None:intergenic 25.0%
! ACTTATAACCATCTAAAAAG+TGG - chr2.1:34117861-34117880 MS.gene071366:intron 25.0%
! ATATATTAGTGTATCCAACA+CGG - chr2.1:34117143-34117162 MS.gene071366:intron 25.0%
! ATTATGACAAATAGATGGTT+CGG + chr2.1:34116831-34116850 None:intergenic 25.0%
! GAGAATAAAAATGAAGACAT+GGG + chr2.1:34116439-34116458 None:intergenic 25.0%
! TATCACCTGAATAAAAACTT+TGG - chr2.1:34117580-34117599 MS.gene071366:intron 25.0%
! TCTTACTTTCATTGAATATC+TGG - chr2.1:34115664-34115683 MS.gene071366:intron 25.0%
! TTATTTCCATAATAGCCTAT+AGG + chr2.1:34115828-34115847 None:intergenic 25.0%
! TTGAACTTGTAATAATCTGA+AGG + chr2.1:34117713-34117732 None:intergenic 25.0%
!! AAAAACTTTGGTTGTTACTT+TGG - chr2.1:34117592-34117611 MS.gene071366:intron 25.0%
!! AAATATGTCTTAGTCTTTCA+TGG - chr2.1:34116580-34116599 MS.gene071366:CDS 25.0%
!! AACAACCAAAGTTTTTATTC+AGG + chr2.1:34117588-34117607 None:intergenic 25.0%
!! AAGCTAAAAGTTTTTCCTAT+AGG - chr2.1:34115810-34115829 MS.gene071366:intron 25.0%
!! AATATGTCTTAGTCTTTCAT+GGG - chr2.1:34116581-34116600 MS.gene071366:CDS 25.0%
!! AATTTTCCAAGATCAAACTT+GGG + chr2.1:34117490-34117509 None:intergenic 25.0%
!! TTATACTAAAAAGCATATCG+TGG - chr2.1:34116145-34116164 MS.gene071366:intron 25.0%
!! TTTCCTTGCATTTTCTATAA+TGG - chr2.1:34115428-34115447 MS.gene071366:intron 25.0%
!! TTTGGAAAGTTTGAAGTAAT+TGG + chr2.1:34117661-34117680 None:intergenic 25.0%
!! TTTGTCATAATGTTGTTTGT+TGG - chr2.1:34116840-34116859 MS.gene071366:intron 25.0%
!!! GGTTTGATTTTGTTTCTATT+TGG - chr2.1:34117888-34117907 MS.gene071366:intron 25.0%
!!! TGATTGTTGTTTTATAAGTG+TGG + chr2.1:34116264-34116283 None:intergenic 25.0%
AACTTTCATTCTCATGTAAG+TGG + chr2.1:34116486-34116505 None:intergenic 30.0%
AATAATGTTGATCTTGCTTG+TGG + chr2.1:34116324-34116343 None:intergenic 30.0%
AATATCATACCAATCCTTCT+TGG + chr2.1:34115485-34115504 None:intergenic 30.0%
ATCAAGCTATCTAAACAATC+AGG + chr2.1:34115696-34115715 None:intergenic 30.0%
CGAGAATAAAAATGAAGACA+TGG + chr2.1:34116440-34116459 None:intergenic 30.0%
CTACTGATAATTACACATTG+AGG - chr2.1:34116989-34117008 MS.gene071366:intron 30.0%
GAACATAAGTAACTAAGTGA+CGG + chr2.1:34115906-34115925 None:intergenic 30.0%
GTTACTTATGTTCGTAGATA+CGG - chr2.1:34115913-34115932 MS.gene071366:CDS 30.0%
GTTGCTGAAATTTGATCAAT+TGG - chr2.1:34116604-34116623 MS.gene071366:CDS 30.0%
GTTTGATCTTGGAAAATTGA+TGG - chr2.1:34117492-34117511 MS.gene071366:intron 30.0%
TAAGCTGAAAAAACATCTCA+TGG - chr2.1:34115845-34115864 MS.gene071366:CDS 30.0%
TCAAGCTATCTAAACAATCA+GGG + chr2.1:34115695-34115714 None:intergenic 30.0%
! ATATGTCTTAGTCTTTCATG+GGG - chr2.1:34116582-34116601 MS.gene071366:CDS 30.0%
! CAATTTTCCAAGATCAAACT+TGG + chr2.1:34117491-34117510 None:intergenic 30.0%
! GAAGGATTGGTATGATATTA+AGG - chr2.1:34115486-34115505 MS.gene071366:intron 30.0%
! GTTTTCACACAAGCATTTAT+TGG + chr2.1:34117754-34117773 None:intergenic 30.0%
! GTTTTTCCTATAGGCTATTA+TGG - chr2.1:34115819-34115838 MS.gene071366:CDS 30.0%
!! AATGGATTTTGAAAAAGGGT+TGG + chr2.1:34115387-34115406 None:intergenic 30.0%
!! CTTTAAGGATCTTCACTTTT+CGG + chr2.1:34117465-34117484 None:intergenic 30.0%
!! GGTTTGATTTGTACATTGTT+AGG - chr2.1:34115615-34115634 MS.gene071366:intron 30.0%
!! TTTCTAAAGTATCGACTACA+GGG - chr2.1:34116402-34116421 MS.gene071366:CDS 30.0%
!!! TTTTCTAAAGTATCGACTAC+AGG - chr2.1:34116401-34116420 MS.gene071366:CDS 30.0%
AAATTCATTCCCGAGATGAT+TGG - chr2.1:34117385-34117404 MS.gene071366:intron 35.0%
AACCATCTAAAAAGTGGCTT+TGG - chr2.1:34117867-34117886 MS.gene071366:intron 35.0%
AATTCATTCCCGAGATGATT+GGG - chr2.1:34117386-34117405 MS.gene071366:intron 35.0%
ACAATCTAGTCAGATTAGAC+AGG - chr2.1:34117071-34117090 MS.gene071366:intron 35.0%
AGATAGATATTTCGAGCAGA+GGG + chr2.1:34116222-34116241 None:intergenic 35.0%
ATCCTGTGATTTGAAGGAAT+TGG - chr2.1:34117357-34117376 MS.gene071366:intron 35.0%
ATTCTCATGTAAGTGGAAAG+AGG + chr2.1:34116479-34116498 None:intergenic 35.0%
ATTTCACAACTGACAAACTG+AGG - chr2.1:34116914-34116933 MS.gene071366:intron 35.0%
CGAAATATCTATCTAGCACT+GGG - chr2.1:34116228-34116247 MS.gene071366:intron 35.0%
CTACGGATCTGAACAAATAA+AGG + chr2.1:34117304-34117323 None:intergenic 35.0%
CTTTCCAAAAGCTCTCTATT+CGG - chr2.1:34117672-34117691 MS.gene071366:intron 35.0%
GACAAGAAAAAAGACTGAAC+TGG - chr2.1:34116349-34116368 MS.gene071366:CDS 35.0%
GTAGATCACATATCGCTATA+GGG + chr2.1:34116200-34116219 None:intergenic 35.0%
TAGATAGATATTTCGAGCAG+AGG + chr2.1:34116223-34116242 None:intergenic 35.0%
TCAAATATGCCAATCCAAAC+AGG - chr2.1:34115936-34115955 MS.gene071366:CDS 35.0%
TCATGCTAAAAGAGAACAGA+GGG + chr2.1:34117818-34117837 None:intergenic 35.0%
TCCTTGTAACCAAAACCAAT+GGG + chr2.1:34116555-34116574 None:intergenic 35.0%
TCGAAATATCTATCTAGCAC+TGG - chr2.1:34116227-34116246 MS.gene071366:intron 35.0%
TGAACTGGCATTATCATGAT+GGG - chr2.1:34116364-34116383 MS.gene071366:CDS 35.0%
TGATCTTGGAAAATTGATGG+AGG - chr2.1:34117495-34117514 MS.gene071366:intron 35.0%
TTCCTTGTAACCAAAACCAA+TGG + chr2.1:34116556-34116575 None:intergenic 35.0%
! ACATTGAGGATGTTTTGCAT+TGG - chr2.1:34117003-34117022 MS.gene071366:intron 35.0%
! CTTTATTTGTTCAGATCCGT+AGG - chr2.1:34117302-34117321 MS.gene071366:intron 35.0%
! TAGAGTGTTTGAGGTTTCAT+TGG - chr2.1:34116700-34116719 MS.gene071366:intron 35.0%
! TGTTTCTATTTGGTCCTTGT+AGG - chr2.1:34117898-34117917 MS.gene071366:intron 35.0%
! TTTCATTGGCTGATCTTCAA+GGG - chr2.1:34116714-34116733 MS.gene071366:intron 35.0%
!! ATCCAACACATGTTTTAGGT+AGG - chr2.1:34117167-34117186 MS.gene071366:intron 35.0%
!! TTCTAAAGTATCGACTACAG+GGG - chr2.1:34116403-34116422 MS.gene071366:CDS 35.0%
!!! AAATCACTGGTTTTGAACCT+AGG - chr2.1:34117227-34117246 MS.gene071366:intron 35.0%
!!! AACCAAAGCCACTTTTTAGA+TGG + chr2.1:34117872-34117891 None:intergenic 35.0%
AAAGCTCCCAAGTTTGATCT+TGG - chr2.1:34117481-34117500 MS.gene071366:intron 40.0%
AACTGACAAACTGAGGTCAT+TGG - chr2.1:34116921-34116940 MS.gene071366:intron 40.0%
AAGAACAAGCGGATCTCTAA+GGG - chr2.1:34115330-34115349 MS.gene071366:CDS 40.0%
AATCTCCTTCCCAATCATCT+CGG + chr2.1:34117398-34117417 None:intergenic 40.0%
ACCATGCATTCAGGAAGATT+AGG - chr2.1:34116744-34116763 MS.gene071366:intron 40.0%
ACCTAATCTTCCTGAATGCA+TGG + chr2.1:34116748-34116767 None:intergenic 40.0%
AGAAGACAAAGCATGATCCT+AGG + chr2.1:34117247-34117266 None:intergenic 40.0%
AGCATCATCCTGTGATTTGA+AGG - chr2.1:34117351-34117370 MS.gene071366:intron 40.0%
AGCTATCTAAACAATCAGGG+AGG + chr2.1:34115692-34115711 None:intergenic 40.0%
ATCCATTTGCCAAGAAGGAT+TGG - chr2.1:34115473-34115492 MS.gene071366:intron 40.0%
ATTTGGTCCTTGTAGGTTCA+TGG - chr2.1:34117905-34117924 MS.gene071366:intron 40.0%
CAAGCTCCAACAATTTCAGT+AGG + chr2.1:34117995-34118014 None:intergenic 40.0%
CACTAAGTATACTCAGTCCA+AGG + chr2.1:34115963-34115982 None:intergenic 40.0%
CTCATGCTAAAAGAGAACAG+AGG + chr2.1:34117819-34117838 None:intergenic 40.0%
CTGAACTGGCATTATCATGA+TGG - chr2.1:34116363-34116382 MS.gene071366:CDS 40.0%
CTGACTAGATTGTGCATAAC+AGG + chr2.1:34117064-34117083 None:intergenic 40.0%
GAATGACAGATTGCTTCAGA+TGG - chr2.1:34116668-34116687 MS.gene071366:intron 40.0%
GACAGAGGAAAACAATACCT+TGG + chr2.1:34115572-34115591 None:intergenic 40.0%
GACCAATTCCTTCAAATCAC+AGG + chr2.1:34117362-34117381 None:intergenic 40.0%
GAGGAACCTACTGAAATTGT+TGG - chr2.1:34117986-34118005 MS.gene071366:CDS 40.0%
GATCAAACTTGGGAGCTTTA+AGG + chr2.1:34117480-34117499 None:intergenic 40.0%
GCTATCTAAACAATCAGGGA+GGG + chr2.1:34115691-34115710 None:intergenic 40.0%
GGTAGATCACATATCGCTAT+AGG + chr2.1:34116201-34116220 None:intergenic 40.0%
GTAATCTCCATGAACCTACA+AGG + chr2.1:34117915-34117934 None:intergenic 40.0%
GTCCTACCTAAAACATGTGT+TGG + chr2.1:34117172-34117191 None:intergenic 40.0%
TAAGAACAAGCGGATCTCTA+AGG - chr2.1:34115329-34115348 MS.gene071366:CDS 40.0%
TACCAATCCTTCTTGGCAAA+TGG + chr2.1:34115478-34115497 None:intergenic 40.0%
TCAAATCACAGGATGATGCT+TGG + chr2.1:34117351-34117370 None:intergenic 40.0%
TCATCTCGGGAATGAATTTG+CGG + chr2.1:34117384-34117403 None:intergenic 40.0%
TGAGAGCTGAAGATGTTCAA+GGG - chr2.1:34116768-34116787 MS.gene071366:intron 40.0%
TGATCTCAACCATCTTCCTA+CGG + chr2.1:34117321-34117340 None:intergenic 40.0%
TTCTTCACCTGGAAAACTGA+AGG + chr2.1:34115514-34115533 None:intergenic 40.0%
TTGAGAGCTGAAGATGTTCA+AGG - chr2.1:34116767-34116786 MS.gene071366:intron 40.0%
! ACTCAAGCATAGAGTGTTTG+AGG - chr2.1:34116691-34116710 MS.gene071366:intron 40.0%
! AGTAGTCTTGACATCCACAT+GGG + chr2.1:34116974-34116993 None:intergenic 40.0%
! CGGTATCCAACACATGTTTT+AGG - chr2.1:34117163-34117182 MS.gene071366:intron 40.0%
! GAAACCGAATAGAGAGCTTT+TGG + chr2.1:34117679-34117698 None:intergenic 40.0%
! GTTTCATTGGCTGATCTTCA+AGG - chr2.1:34116713-34116732 MS.gene071366:intron 40.0%
! GTTTTCCAGGTGAAGAATGT+CGG - chr2.1:34115517-34115536 MS.gene071366:intron 40.0%
! TTCATTGGCTGATCTTCAAG+GGG - chr2.1:34116715-34116734 MS.gene071366:intron 40.0%
!! TTGGTTGTTACTTTGGTCAC+TGG - chr2.1:34117599-34117618 MS.gene071366:intron 40.0%
!! TTGTCAAATAGCGGGTAAAG+TGG + chr2.1:34116086-34116105 None:intergenic 40.0%
!! TTTGCATTGGCTTTACCAAG+AGG - chr2.1:34117016-34117035 MS.gene071366:intron 40.0%
!!! ACCCATTGGTTTTGGTTACA+AGG - chr2.1:34116551-34116570 MS.gene071366:CDS 40.0%
!!! GCTATTCAACCCATTGGTTT+TGG - chr2.1:34116543-34116562 MS.gene071366:CDS 40.0%
AACTCTTGTTGAAGCCCATG+TGG - chr2.1:34116957-34116976 MS.gene071366:intron 45.0%
ACATGTGTTGGATACCGTGT+TGG + chr2.1:34117160-34117179 None:intergenic 45.0%
AGAACAAGCGGATCTCTAAG+GGG - chr2.1:34115331-34115350 MS.gene071366:CDS 45.0%
ATCTCCTTCCCAATCATCTC+GGG + chr2.1:34117397-34117416 None:intergenic 45.0%
ATGTTGATCTTGCTTGTGGC+AGG + chr2.1:34116320-34116339 None:intergenic 45.0%
ATGTTGGCACAAAGGTAGAG+AGG - chr2.1:34117942-34117961 MS.gene071366:intron 45.0%
CAAGGGGTAAATACTAGACG+TGG + chr2.1:34117428-34117447 None:intergenic 45.0%
CGGATGAACACATTCTGCAA+GGG + chr2.1:34117445-34117464 None:intergenic 45.0%
CTAGCTGCTATTCAACCCAT+TGG - chr2.1:34116537-34116556 MS.gene071366:CDS 45.0%
GATCCGCTTGTTCTTACCAA+CGG + chr2.1:34115325-34115344 None:intergenic 45.0%
GGATGAACACATTCTGCAAG+GGG + chr2.1:34117444-34117463 None:intergenic 45.0%
GGTTCATGGAGATTACTCTG+AGG - chr2.1:34117919-34117938 MS.gene071366:intron 45.0%
TCGGATGAACACATTCTGCA+AGG + chr2.1:34117446-34117465 None:intergenic 45.0%
TCTTGCAGTGCAGAAAACAG+CGG - chr2.1:34116024-34116043 MS.gene071366:intron 45.0%
TGCTGATCCATTTGCCAAGA+AGG - chr2.1:34115468-34115487 MS.gene071366:intron 45.0%
TGTTCAGATCCGTAGGAAGA+TGG - chr2.1:34117309-34117328 MS.gene071366:intron 45.0%
TGTTGATCTTGCTTGTGGCA+GGG + chr2.1:34116319-34116338 None:intergenic 45.0%
! ATCTCTAAGGGGAAGAAAGG+TGG - chr2.1:34115342-34115361 MS.gene071366:CDS 45.0%
! CAGTAGTCTTGACATCCACA+TGG + chr2.1:34116975-34116994 None:intergenic 45.0%
! GGAGATTACTCTGAGGATGT+TGG - chr2.1:34117926-34117945 MS.gene071366:intron 45.0%
! TAAGGCTCCTTCAGTTTTCC+AGG - chr2.1:34115504-34115523 MS.gene071366:intron 45.0%
!! CAATGGGTTGAATAGCAGCT+AGG + chr2.1:34116539-34116558 None:intergenic 45.0%
!! ATATTATGAAAATAAATATT+GGG + chr2.1:34117563-34117582 None:intergenic 5.0%
!!! AACAAAATTAAAATTTTAAA+AGG + chr2.1:34117793-34117812 None:intergenic 5.0%
!!! ATTTTTTTTTTTTATTTACA+GGG - chr2.1:34116886-34116905 MS.gene071366:intron 5.0%
ACTCAGTCCAAGGACCTGTT+TGG + chr2.1:34115953-34115972 None:intergenic 50.0%
AGAGAGGCCTGCTGATGAAA+TGG - chr2.1:34117958-34117977 MS.gene071366:CDS 50.0%
CATAACAGGTCCTCTTCACC+TGG + chr2.1:34117050-34117069 None:intergenic 50.0%
CATTCCCGAGATGATTGGGA+AGG - chr2.1:34117390-34117409 MS.gene071366:intron 50.0%
CTTGCAGTGCAGAAAACAGC+GGG - chr2.1:34116025-34116044 MS.gene071366:intron 50.0%
GCCTGCTGATGAAATGGTGA+CGG - chr2.1:34117964-34117983 MS.gene071366:CDS 50.0%
GTCCAAGGACCTGTTTGGAT+TGG + chr2.1:34115948-34115967 None:intergenic 50.0%
TACCAAGAGGAGAGCTAACC+AGG - chr2.1:34117029-34117048 MS.gene071366:intron 50.0%
TCCGTCACCATTTCATCAGC+AGG + chr2.1:34117968-34117987 None:intergenic 50.0%
TCTTGCCGACATTCTTCACC+TGG + chr2.1:34115525-34115544 None:intergenic 50.0%
TGCCAATCCAAACAGGTCCT+TGG - chr2.1:34115943-34115962 MS.gene071366:CDS 50.0%
! CGGATCTCTAAGGGGAAGAA+AGG - chr2.1:34115339-34115358 MS.gene071366:CDS 50.0%
! CTCTGAGGATGTTGGCACAA+AGG - chr2.1:34117934-34117953 MS.gene071366:intron 50.0%
! TGGCCGTTGGTAAGAACAAG+CGG - chr2.1:34115319-34115338 MS.gene071366:CDS 50.0%
!! TGCTGATGAAATGGTGACGG+AGG - chr2.1:34117967-34117986 MS.gene071366:CDS 50.0%
ACCCTCGTGTCTCGTACTCA+GGG - chr2.1:34115544-34115563 MS.gene071366:intron 55.0%
ACCCTGAGTACGAGACACGA+GGG + chr2.1:34115548-34115567 None:intergenic 55.0%
GGAGAGCTAACCAGGTGAAG+AGG - chr2.1:34117037-34117056 MS.gene071366:intron 55.0%
GGGACGAAGACCATGCATTC+AGG - chr2.1:34116735-34116754 MS.gene071366:intron 55.0%
TACCCTGAGTACGAGACACG+AGG + chr2.1:34115549-34115568 None:intergenic 55.0%
TGAGGTCATTGGTGCGCAAG+TGG - chr2.1:34116932-34116951 MS.gene071366:intron 55.0%
! CACCTGGTTAGCTCTCCTCT+TGG + chr2.1:34117034-34117053 None:intergenic 55.0%
! GTCTCGTACTCAGGGTACCA+AGG - chr2.1:34115552-34115571 MS.gene071366:intron 55.0%
CTTGTGGCAGGGCAGAAGTG+GGG + chr2.1:34116308-34116327 None:intergenic 60.0%
GACCCTCGTGTCTCGTACTC+AGG - chr2.1:34115543-34115562 MS.gene071366:intron 60.0%
GCTTGTGGCAGGGCAGAAGT+GGG + chr2.1:34116309-34116328 None:intergenic 60.0%
TGCTTGTGGCAGGGCAGAAG+TGG + chr2.1:34116310-34116329 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 34115318 34118015 34115318 ID=MS.gene071366
chr2.1 mRNA 34115318 34118015 34115318 ID=MS.gene071366.t1;Parent=MS.gene071366
chr2.1 exon 34117957 34118015 34117957 ID=MS.gene071366.t1.exon1;Parent=MS.gene071366.t1
chr2.1 CDS 34117957 34118015 34117957 ID=cds.MS.gene071366.t1;Parent=MS.gene071366.t1
chr2.1 exon 34117760 34117865 34117760 ID=MS.gene071366.t1.exon2;Parent=MS.gene071366.t1
chr2.1 CDS 34117760 34117865 34117760 ID=cds.MS.gene071366.t1;Parent=MS.gene071366.t1
chr2.1 exon 34116519 34116656 34116519 ID=MS.gene071366.t1.exon3;Parent=MS.gene071366.t1
chr2.1 CDS 34116519 34116656 34116519 ID=cds.MS.gene071366.t1;Parent=MS.gene071366.t1
chr2.1 exon 34116241 34116426 34116241 ID=MS.gene071366.t1.exon4;Parent=MS.gene071366.t1
chr2.1 CDS 34116241 34116426 34116241 ID=cds.MS.gene071366.t1;Parent=MS.gene071366.t1
chr2.1 exon 34115817 34116017 34115817 ID=MS.gene071366.t1.exon5;Parent=MS.gene071366.t1
chr2.1 CDS 34115817 34116017 34115817 ID=cds.MS.gene071366.t1;Parent=MS.gene071366.t1
chr2.1 exon 34115318 34115413 34115318 ID=MS.gene071366.t1.exon6;Parent=MS.gene071366.t1
chr2.1 CDS 34115318 34115413 34115318 ID=cds.MS.gene071366.t1;Parent=MS.gene071366.t1
Gene Sequence

>MS.gene071366

ATGGCCGTTGGTAAGAACAAGCGGATCTCTAAGGGGAAGAAAGGTGGCAAGAAGAAAGCGTTAGTACCAACCCTTTTTCAAAATCCATTCAAATTTTCATTTTTTACAATTTTCCTTGCATTTTCTATAATGGTTTCTATGAACTTGCAGTGCTGATCCATTTGCCAAGAAGGATTGGTATGATATTAAGGCTCCTTCAGTTTTCCAGGTGAAGAATGTCGGCAAGACCCTCGTGTCTCGTACTCAGGGTACCAAGGTATTGTTTTCCTCTGTCATGTTTTTTGTTTTTTGTAATTTGGTTTGATTTGTACATTGTTAGGTTATTGTACGAATTTATATGATCCTATCTTACTTTCATTGAATATCTGGACCCTCCCTGATTGTTTAGATAGCTTGATTAAGAGCTTTTATATTTAAGTGTTGTTATATAAGTGTTTATGTATAAACTATTTTTATAACTAAAGATAGAATAAAGTCAAATTGTTTTCACATAAGCTAAAAGTTTTTCCTATAGGCTATTATGGAAATAAGCTGAAAAAACATCTCATGGATATGTCATAAGCTTTTTCGTTAAGCTCTTTCAAACCGTCACTTAGTTACTTATGTTCGTAGATACGGTCAAATATGCCAATCCAAACAGGTCCTTGGACTGAGTATACTTAGTGACATTATAGTGTTCGTGTTGTGTTTTTGTCAGTGTTCTCAATCTTGCAGTGCAGAAAACAGCGGGTTGTTAAAATTCTGCTACACAGTAGTGCTATAGTGCCACTTTACCCGCTATTTGACAACATTTTTTTTTTGCTAAATAGTGTACCATAAAACAATTTTTATACTAAAAAGCATATCGTGGAACAATAGTGATTTGTATAAATTCAGCTACCCTATAGCGATATGTGATCTACCCTCTGCTCGAAATATCTATCTAGCACTGGGAGAGATGCGTCCACACTTATAAAACAACAATCATATCTTAAACTATCAGCTTGACCCCACTTCTGCCCTGCCACAAGCAAGATCAACATTATTTAAAAGACAAGAAAAAAGACTGAACTGGCATTATCATGATGGGCTCAAACTTAAATATTTTCTAAAGTATCGACTACAGGGGACATGACATTCCCATGTCTTCATTTTTATTCTCGTGATTAGAGTGAGTGTCCTCTTTCCACTTACATGAGAATGAAAGTTTTAATGTTACATTGTAACATATATTCATTTCCTAGCTGCTATTCAACCCATTGGTTTTGGTTACAAGGAATAACAAATATGTCTTAGTCTTTCATGGGGTTGCTGAAATTTGATCAATTGGAGTTTTGCACGCTTAATGCTTATTTAGAAAATGGTTGTTTTGAATGACAGATTGCTTCAGATGGACTCAAGCATAGAGTGTTTGAGGTTTCATTGGCTGATCTTCAAGGGGACGAAGACCATGCATTCAGGAAGATTAGGTTGAGAGCTGAAGATGTTCAAGGGAAAAATCTTTTGACAAATTTCTGGGTATGATAAGCTGCCGAACCATCTATTTGTCATAATGTTGTTTGTTGGTATTTTTTTTTAATTTGATTTTGATTTTTTTTTTTTATTTACAGGGGATGAATTTCACAACTGACAAACTGAGGTCATTGGTGCGCAAGTGGCAAACTCTTGTTGAAGCCCATGTGGATGTCAAGACTACTGATAATTACACATTGAGGATGTTTTGCATTGGCTTTACCAAGAGGAGAGCTAACCAGGTGAAGAGGACCTGTTATGCACAATCTAGTCAGATTAGACAGGTAGATACATTGACGCTTTTCTTTTCAAATCATACTAGTTTTCTAGATTTATATATTAGTGTATCCAACACGGTATCCAACACATGTTTTAGGTAGGACCTTTCTTTTATGAAATGCTGTTATATATAAAGAAGAAATCACTGGTTTTGAACCTAGGATCATGCTTTGTCTTCTTCTAAGATATTTCTTATTAGTTACTAATGTTACACCTTTATTTGTTCAGATCCGTAGGAAGATGGTTGAGATCATGATCAACCAAGCATCATCCTGTGATTTGAAGGAATTGGTCCGCAAATTCATTCCCGAGATGATTGGGAAGGAGATTGAGAAAGCCACGTCTAGTATTTACCCCTTGCAGAATGTGTTCATCCGAAAAGTGAAGATCCTTAAAGCTCCCAAGTTTGATCTTGGAAAATTGATGGAGGTATTTTTTTGAAACAACTTTTTTATGTTTGTTCTCATTCACACCCAATATTTATTTTCATAATATCACCTGAATAAAAACTTTGGTTGTTACTTTGGTCACTGGTGTTATTTGCTTGACGAGATTTACTCTTTAATATAACCAATTACTTCAAACTTTCCAAAAGCTCTCTATTCGGTTTCTCCATAAACAACCTTCAGATTATTACAAGTTCAAAACTAAATACTTACTAATCCAATAAATGCTTGTGTGAAAACAAACTTAATCATGTTGCCTTTTAAAATTTTAATTTTGTTTTCCCTCTGTTCTCTTTTAGCATGAGTATGCAGTTGTCACGTGTGCACACTTATAACCATCTAAAAAGTGGCTTTGGTTTGATTTTGTTTCTATTTGGTCCTTGTAGGTTCATGGAGATTACTCTGAGGATGTTGGCACAAAGGTAGAGAGGCCTGCTGATGAAATGGTGACGGAGGAACCTACTGAAATTGTTGGAGCTTGA
Protein sequence

>MS.gene071366.t1

MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASDGLKHRVFEVSLADLQGDEDHAFRKIRLRAEDVQGKNLLTNFWGMNFTTDKLRSLVRKWQTLVEAHVDVKTTDNYTLRMFCIGFTKRRANQVKRTCYAQSSQIRQIRRKMVEIMINQASSCDLKELVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGTKVERPADEMVTEEPTEIVGA