AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene34372

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene34372.t1 MTR_1g103100 92.720 261 4 1 1 246 1 261 4.53e-179 492
MS.gene34372.t1 MTR_3g012040 90.421 261 10 1 1 246 1 261 7.41e-166 459
MS.gene34372.t1 MTR_5g006440 88.506 261 15 1 1 246 1 261 4.63e-161 446
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene34372.t1 AT3G04840 80.153 262 36 2 1 246 1 262 6.81e-149 416
MS.gene34372.t1 AT4G34670 80.534 262 35 2 1 246 1 262 1.10e-147 413

Find 71 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCAAACTTGGGAGCTTTA+AGG 0.168578 1.2:-76760326 None:intergenic
GATATCATACCAATCCTTCT+TGG 0.295389 1.2:-76758605 None:intergenic
ATTTGGTCCTTGTAGGTTCA+TGG 0.319619 1.2:+76760766 MS.gene34372:intron
AAAGCTCCCAAGTTTGATCT+TGG 0.357514 1.2:+76760330 MS.gene34372:CDS
TAAGAACAAGCGGATCTCTA+AGG 0.365175 1.2:+76758463 MS.gene34372:CDS
GTTTGATCTTGGAAAATTGA+TGG 0.369245 1.2:+76760341 MS.gene34372:CDS
AAATTCATTCCCGAGATGAT+TGG 0.381702 1.2:+76760234 MS.gene34372:CDS
GACCCTCGTGTCTCGTACTC+AGG 0.406163 1.2:+76758666 MS.gene34372:CDS
TACCAATCCTTCTTGGCAAA+TGG 0.412105 1.2:-76758598 None:intergenic
TAGAGTGTTTGAGGTTTCAT+TGG 0.413434 1.2:+76759546 MS.gene34372:CDS
AATTCATTCCCGAGATGATT+GGG 0.425172 1.2:+76760235 MS.gene34372:CDS
GTTTCATTGGCTGATCTTCA+AGG 0.434675 1.2:+76759559 MS.gene34372:CDS
AGCATCATCTTGTGATTTGA+AGG 0.436321 1.2:+76760200 MS.gene34372:CDS
TGCTGATCCATTTGCCAAGA+AGG 0.436339 1.2:+76758591 MS.gene34372:CDS
TCCGTCGCCATTTCATCAGC+AGG 0.447536 1.2:-76760826 None:intergenic
ACTCAAGCATAGAGTGTTTG+AGG 0.454600 1.2:+76759537 MS.gene34372:CDS
TACCAAGAGGAGAGCTAACC+AGG 0.455144 1.2:+76759879 MS.gene34372:CDS
GGATGAACACGTTCTGCAAT+GGG 0.459558 1.2:-76760290 None:intergenic
ATCTTGTGATTTGAAGGGAT+TGG 0.459981 1.2:+76760206 MS.gene34372:CDS
ATCCATTTGCCAAGAAGGAT+TGG 0.465718 1.2:+76758596 MS.gene34372:CDS
ATCTCTTTCCCAATCATCTC+GGG 0.472425 1.2:-76760243 None:intergenic
CGGATGAACACGTTCTGCAA+TGG 0.478333 1.2:-76760291 None:intergenic
CTGACTAGATTGTGCATAGC+AGG 0.478379 1.2:-76759911 None:intergenic
AGAGAGGCCTGCTGATGAAA+TGG 0.479682 1.2:+76760819 MS.gene34372:CDS
GAGGAACCTACTGAAATTGT+TGG 0.484047 1.2:+76760847 MS.gene34372:CDS
GAAGGATTGGTATGATATCA+AGG 0.488212 1.2:+76758609 MS.gene34372:CDS
GTCTCGTACTCAGGGTACTA+AGG 0.497238 1.2:+76758675 MS.gene34372:CDS
TGGTCAGATCCGTAGGAAGA+TGG 0.499805 1.2:+76760158 MS.gene34372:intron
CACCTGGTTAGCTCTCCTCT+TGG 0.502596 1.2:-76759881 None:intergenic
TCAAATCACAAGATGATGCT+TGG 0.512552 1.2:-76760197 None:intergenic
CGGATCTCTAAGGGGAAGAA+AGG 0.516719 1.2:+76758473 MS.gene34372:CDS
TCATCTCGGGAATGAATTTG+AGG 0.518795 1.2:-76760230 None:intergenic
CATAGCAGGTCCTCTTCACC+TGG 0.518854 1.2:-76759897 None:intergenic
AAGAACAAGCGGATCTCTAA+GGG 0.521243 1.2:+76758464 MS.gene34372:CDS
CTTGTTCTTACCAACGGCCA+TGG 0.523346 1.2:-76758450 None:intergenic
TTTCATTGGCTGATCTTCAA+GGG 0.523908 1.2:+76759560 MS.gene34372:CDS
TCTTGCCGACATTCTTCACC+TGG 0.534041 1.2:-76758645 None:intergenic
TTGAGAGCTGAAGATGTTCA+AGG 0.537527 1.2:+76759613 MS.gene34372:CDS
AACATGCATTCAGAAAGATT+AGG 0.539844 1.2:+76759590 MS.gene34372:CDS
CTTTATTTGGTCAGATCCGT+AGG 0.541538 1.2:+76760151 MS.gene34372:intron
GCATCATCTTGTGATTTGAA+GGG 0.543515 1.2:+76760201 MS.gene34372:CDS
GATCTCTTTCCCAATCATCT+CGG 0.545949 1.2:-76760244 None:intergenic
TGCTGATGAAATGGCGACGG+AGG 0.555297 1.2:+76760828 MS.gene34372:CDS
GGAGAGCTAACCAGGTGAAG+AGG 0.557404 1.2:+76759887 MS.gene34372:CDS
GAATGACAGATTGCTTCAGA+TGG 0.560187 1.2:+76759514 MS.gene34372:intron
GATCCGCTTGTTCTTACCAA+CGG 0.569816 1.2:-76758456 None:intergenic
CACTGAGGATGTTGGCACAA+AGG 0.576695 1.2:+76760795 MS.gene34372:CDS
ACAATCTAGTCAGATTAGAC+AGG 0.580594 1.2:+76759921 MS.gene34372:CDS
CAAGCTCCAACAATTTCAGT+AGG 0.582102 1.2:-76760853 None:intergenic
TTCTTCACCTGGAAAACTGA+AGG 0.588083 1.2:-76758634 None:intergenic
TGATCTCAACCATCTTCCTA+CGG 0.590794 1.2:-76760167 None:intergenic
GCCTGCTGATGAAATGGCGA+CGG 0.592955 1.2:+76760825 MS.gene34372:CDS
TTCATTGGCTGATCTTCAAG+GGG 0.595752 1.2:+76759561 MS.gene34372:CDS
CAGTAGTCTTGACATCCACA+TGG 0.596992 1.2:-76759822 None:intergenic
GGAGATTACACTGAGGATGT+TGG 0.598638 1.2:+76760787 MS.gene34372:CDS
AACAGTGAAACCATGGCCGT+TGG 0.599680 1.2:+76758440 None:intergenic
AACTCTTATTGAAGCCCATG+TGG 0.605950 1.2:+76759807 MS.gene34372:CDS
TGATCTTGGAAAATTGATGG+AGG 0.612140 1.2:+76760344 MS.gene34372:CDS
TGAGAGCTGAAGATGTTCAA+GGG 0.612312 1.2:+76759614 MS.gene34372:CDS
ACCCTCGTGTCTCGTACTCA+GGG 0.615233 1.2:+76758667 MS.gene34372:CDS
ATCTCTAAGGGGAAGAAAGG+TGG 0.621403 1.2:+76758476 MS.gene34372:CDS
TGGCCGTTGGTAAGAACAAG+CGG 0.624911 1.2:+76758453 MS.gene34372:CDS
CAATGGGTAAATACTAGACG+TGG 0.627663 1.2:-76760274 None:intergenic
CTACTGATAATTACACATTG+AGG 0.636083 1.2:+76759839 MS.gene34372:CDS
TACCCTGAGTACGAGACACG+AGG 0.648922 1.2:-76758669 None:intergenic
TTTGCATTGGATTTACCAAG+AGG 0.649561 1.2:+76759866 MS.gene34372:CDS
ATGTTGGCACAAAGGTAGAG+AGG 0.654238 1.2:+76760803 MS.gene34372:CDS
ACCCTGAGTACGAGACACGA+GGG 0.678904 1.2:-76758668 None:intergenic
AGTAGTCTTGACATCCACAT+GGG 0.706350 1.2:-76759821 None:intergenic
AGAACAAGCGGATCTCTAAG+GGG 0.721950 1.2:+76758465 MS.gene34372:CDS
GGTTCATGGAGATTACACTG+AGG 0.816717 1.2:+76760780 MS.gene34372:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAAATTAAAATTTAAA+AGG - chr1.2:76760655-76760674 None:intergenic 0.0%
!! AATTGTAAAAAAATGAAAAA+AGG - chr1.2:76758526-76758545 None:intergenic 10.0%
!! ATTGTAAAAAAATGAAAAAA+GGG - chr1.2:76758525-76758544 None:intergenic 10.0%
!! GATATTATGAAAATAAATAT+TGG - chr1.2:76760413-76760432 None:intergenic 10.0%
!!! TTTTTATTTTTTATTTACAG+GGG + chr1.2:76759737-76759756 MS.gene34372:intron 10.0%
!! TTAGTATAAAAATTGTTTCA+TGG - chr1.2:76759298-76759317 None:intergenic 15.0%
!!! AAAATCTTTTGACAAATTTT+TGG + chr1.2:76759638-76759657 MS.gene34372:CDS 15.0%
!!! AAATCTTTTGACAAATTTTT+GGG + chr1.2:76759639-76759658 MS.gene34372:CDS 15.0%
!! ATAAGCTATTTAAACAATCA+GGG - chr1.2:76758841-76758860 None:intergenic 20.0%
!! CTTAATGCTTATATAGAAAA+TGG + chr1.2:76759484-76759503 MS.gene34372:intron 20.0%
!! TAAAAAAATGAAAAAAGGGT+TGG - chr1.2:76758521-76758540 None:intergenic 20.0%
!! TTATACTAAATAACATATCG+TGG + chr1.2:76759309-76759328 MS.gene34372:intron 20.0%
!! TTATTTCCATAATAGCTTAT+AGG - chr1.2:76758963-76758982 None:intergenic 20.0%
!! TTGTATTCATATTCAATTCT+GGG + chr1.2:76758557-76758576 MS.gene34372:intron 20.0%
!! TTTGTATTCATATTCAATTC+TGG + chr1.2:76758556-76758575 MS.gene34372:intron 20.0%
!!! AATAGCTTTTAATAATCTGA+AGG - chr1.2:76760563-76760582 None:intergenic 20.0%
! AAAAAAATGTTGTCAACTAG+CGG - chr1.2:76759260-76759279 None:intergenic 25.0%
! ACAACATTATGACAAATAGA+TGG - chr1.2:76759679-76759698 None:intergenic 25.0%
! CATAAGCTATTTAAACAATC+AGG - chr1.2:76758842-76758861 None:intergenic 25.0%
! TTACAAAAAACAAGACAAAG+CGG - chr1.2:76758710-76758729 None:intergenic 25.0%
!! AAAAACTTTGGTTGTTACTT+TGG + chr1.2:76760443-76760462 MS.gene34372:intron 25.0%
!! AAATATGTCTTAGTCTTTCA+TGG + chr1.2:76759426-76759445 MS.gene34372:intron 25.0%
!! AATATGTCTTAGTCTTTCAT+GGG + chr1.2:76759427-76759446 MS.gene34372:intron 25.0%
!! AATTTTCCAAGATCAAACTT+GGG - chr1.2:76760339-76760358 None:intergenic 25.0%
!! GATTTTCCTATAAGCTATTA+TGG + chr1.2:76758954-76758973 MS.gene34372:intron 25.0%
!! GTTTTACCTAAAATATGTGT+TGG - chr1.2:76760021-76760040 None:intergenic 25.0%
!! TTTGGAAAGTTTGAAGTAAT+TGG - chr1.2:76760512-76760531 None:intergenic 25.0%
!! TTTGTCATAATGTTGTTTGT+TGG + chr1.2:76759683-76759702 MS.gene34372:intron 25.0%
!!! AAAGTGTCATTGATTTGATT+TGG + chr1.2:76760738-76760757 MS.gene34372:intron 25.0%
!!! AAATTTTTGGGTATGATATG+CGG + chr1.2:76759651-76759670 MS.gene34372:intron 25.0%
!!! AATCAATGACACTTTTTAGA+TGG - chr1.2:76760733-76760752 None:intergenic 25.0%
!!! AATCACTTGTTTTGAACTTA+TGG + chr1.2:76760077-76760096 MS.gene34372:intron 25.0%
!!! GATTTGATTTGTACATTGTT+AGG + chr1.2:76758738-76758757 MS.gene34372:intron 25.0%
!!! TAATAATCTGAAGGTGTTTA+TGG - chr1.2:76760554-76760573 None:intergenic 25.0%
AAAAAATGTTGTCAACTAGC+GGG - chr1.2:76759259-76759278 None:intergenic 30.0%
AACATGCATTCAGAAAGATT+AGG + chr1.2:76759590-76759609 MS.gene34372:CDS 30.0%
ACTAATGTAGCACCTTTATT+TGG + chr1.2:76760138-76760157 MS.gene34372:intron 30.0%
AGCAGCATTTCATAAAAGAA+AGG - chr1.2:76760043-76760062 None:intergenic 30.0%
ATAGCATCACTAAGTATACT+CGG - chr1.2:76759135-76759154 None:intergenic 30.0%
CAGATATTAGTGATTCAACA+TGG + chr1.2:76759992-76760011 MS.gene34372:intron 30.0%
CTACTGATAATTACACATTG+AGG + chr1.2:76759839-76759858 MS.gene34372:CDS 30.0%
GTTACTTATGTTCGAAGATA+AGG + chr1.2:76759078-76759097 MS.gene34372:intron 30.0%
GTTTGATCTTGGAAAATTGA+TGG + chr1.2:76760341-76760360 MS.gene34372:CDS 30.0%
! ATATGTCTTAGTCTTTCATG+GGG + chr1.2:76759428-76759447 MS.gene34372:intron 30.0%
! CAATTTTCCAAGATCAAACT+TGG - chr1.2:76760340-76760359 None:intergenic 30.0%
! TGGTATCCAACACATATTTT+AGG + chr1.2:76760012-76760031 MS.gene34372:intron 30.0%
! TTGTACATTGTTAGGTTGTT+TGG + chr1.2:76758746-76758765 MS.gene34372:intron 30.0%
!! CTTTAAGGATCTTCACTTTT+CGG - chr1.2:76760314-76760333 None:intergenic 30.0%
!! GATTTGATTTGGTTGCTATT+TGG + chr1.2:76760749-76760768 MS.gene34372:intron 30.0%
AAATTCATTCCCGAGATGAT+TGG + chr1.2:76760234-76760253 MS.gene34372:CDS 35.0%
AACATATCGTGGAACAATAG+TGG + chr1.2:76759320-76759339 MS.gene34372:intron 35.0%
AATTCATTCCCGAGATGATT+GGG + chr1.2:76760235-76760254 MS.gene34372:CDS 35.0%
ACAATCTAGTCAGATTAGAC+AGG + chr1.2:76759921-76759940 MS.gene34372:CDS 35.0%
AGCATCATCTTGTGATTTGA+AGG + chr1.2:76760200-76760219 MS.gene34372:CDS 35.0%
ATCTTGTGATTTGAAGGGAT+TGG + chr1.2:76760206-76760225 MS.gene34372:CDS 35.0%
ATTTCACAACTGACAAACTG+AGG + chr1.2:76759764-76759783 MS.gene34372:intron 35.0%
CTTTCCAAAAGCTCTCTATT+CGG + chr1.2:76760523-76760542 MS.gene34372:intron 35.0%
GATATCATACCAATCCTTCT+TGG - chr1.2:76758608-76758627 None:intergenic 35.0%
GCATCATCTTGTGATTTGAA+GGG + chr1.2:76760201-76760220 MS.gene34372:CDS 35.0%
TAAGCTGCAAAAACATCTCA+TGG + chr1.2:76758980-76758999 MS.gene34372:intron 35.0%
TCAAATATGCCAATCCAAAC+AGG + chr1.2:76759101-76759120 MS.gene34372:intron 35.0%
TCAAATCACAAGATGATGCT+TGG - chr1.2:76760200-76760219 None:intergenic 35.0%
TCAAGCTAAAAGAGAACAGA+AGG - chr1.2:76760679-76760698 None:intergenic 35.0%
TCTTGTAGTGCAGAAAATAG+CGG + chr1.2:76759189-76759208 MS.gene34372:intron 35.0%
TGATCTTGGAAAATTGATGG+AGG + chr1.2:76760344-76760363 MS.gene34372:CDS 35.0%
TGTGTTAAATAGCAGCTATG+CGG - chr1.2:76759382-76759401 None:intergenic 35.0%
TTTGCATTGGATTTACCAAG+AGG + chr1.2:76759866-76759885 MS.gene34372:CDS 35.0%
! AACAACCAAAGTTTTTGTGC+AGG - chr1.2:76760439-76760458 None:intergenic 35.0%
! ACATTGAGGATGTTTTGCAT+TGG + chr1.2:76759853-76759872 MS.gene34372:CDS 35.0%
! ATAGCTGCTATTTAACACAC+TGG + chr1.2:76759383-76759402 MS.gene34372:intron 35.0%
! CATTGTTAGGTTGTTTGGTT+TGG + chr1.2:76758751-76758770 MS.gene34372:intron 35.0%
! GAAGGATTGGTATGATATCA+AGG + chr1.2:76758609-76758628 MS.gene34372:CDS 35.0%
! GTTGCTGAAAGTTGATCAAT+TGG + chr1.2:76759450-76759469 MS.gene34372:intron 35.0%
! GTTTTCACACAAGCACTTAT+TGG - chr1.2:76760616-76760635 None:intergenic 35.0%
! TAGAGTGTTTGAGGTTTCAT+TGG + chr1.2:76759546-76759565 MS.gene34372:CDS 35.0%
! TTTCATTGGCTGATCTTCAA+GGG + chr1.2:76759560-76759579 MS.gene34372:CDS 35.0%
!!! ACACACTGGTTTTAGTTACA+AGG + chr1.2:76759397-76759416 MS.gene34372:intron 35.0%
AAAGCTCCCAAGTTTGATCT+TGG + chr1.2:76760330-76760349 MS.gene34372:CDS 40.0%
AACTCTTATTGAAGCCCATG+TGG + chr1.2:76759807-76759826 MS.gene34372:CDS 40.0%
AACTGACAAACTGAGGTCAT+TGG + chr1.2:76759771-76759790 MS.gene34372:intron 40.0%
AAGAACAAGCGGATCTCTAA+GGG + chr1.2:76758464-76758483 MS.gene34372:CDS 40.0%
ATCCATTTGCCAAGAAGGAT+TGG + chr1.2:76758596-76758615 MS.gene34372:CDS 40.0%
ATCTCTTTCCCAATCATCTC+GGG - chr1.2:76760246-76760265 None:intergenic 40.0%
ATTTGGTCCTTGTAGGTTCA+TGG + chr1.2:76760766-76760785 MS.gene34372:intron 40.0%
CAAGCTCCAACAATTTCAGT+AGG - chr1.2:76760856-76760875 None:intergenic 40.0%
CAATGGGTAAATACTAGACG+TGG - chr1.2:76760277-76760296 None:intergenic 40.0%
CTACGGATCTGACCAAATAA+AGG - chr1.2:76760153-76760172 None:intergenic 40.0%
CTTGTAGTGCAGAAAATAGC+GGG + chr1.2:76759190-76759209 MS.gene34372:intron 40.0%
GAATGACAGATTGCTTCAGA+TGG + chr1.2:76759514-76759533 MS.gene34372:intron 40.0%
GAGGAACCTACTGAAATTGT+TGG + chr1.2:76760847-76760866 MS.gene34372:CDS 40.0%
GATCAAACTTGGGAGCTTTA+AGG - chr1.2:76760329-76760348 None:intergenic 40.0%
GATCTCTTTCCCAATCATCT+CGG - chr1.2:76760247-76760266 None:intergenic 40.0%
GTAATCTCCATGAACCTACA+AGG - chr1.2:76760776-76760795 None:intergenic 40.0%
TAAGAACAAGCGGATCTCTA+AGG + chr1.2:76758463-76758482 MS.gene34372:CDS 40.0%
TACCAATCCTTCTTGGCAAA+TGG - chr1.2:76758601-76758620 None:intergenic 40.0%
TCATCTCGGGAATGAATTTG+AGG - chr1.2:76760233-76760252 None:intergenic 40.0%
TCGTTCCTGCACAAAAACTT+TGG + chr1.2:76760431-76760450 MS.gene34372:intron 40.0%
TGAGAGCTGAAGATGTTCAA+GGG + chr1.2:76759614-76759633 MS.gene34372:CDS 40.0%
TGATCTCAACCATCTTCCTA+CGG - chr1.2:76760170-76760189 None:intergenic 40.0%
TTCTTCACCTGGAAAACTGA+AGG - chr1.2:76758637-76758656 None:intergenic 40.0%
TTGAGAGCTGAAGATGTTCA+AGG + chr1.2:76759613-76759632 MS.gene34372:CDS 40.0%
! ACTCAAGCATAGAGTGTTTG+AGG + chr1.2:76759537-76759556 MS.gene34372:CDS 40.0%
! AGTAGTCTTGACATCCACAT+GGG - chr1.2:76759824-76759843 None:intergenic 40.0%
! CTTTATTTGGTCAGATCCGT+AGG + chr1.2:76760151-76760170 MS.gene34372:intron 40.0%
! GAAACCGAATAGAGAGCTTT+TGG - chr1.2:76760530-76760549 None:intergenic 40.0%
! GTTTCATTGGCTGATCTTCA+AGG + chr1.2:76759559-76759578 MS.gene34372:CDS 40.0%
! GTTTTCCAGGTGAAGAATGT+CGG + chr1.2:76758640-76758659 MS.gene34372:CDS 40.0%
! TTCATTGGCTGATCTTCAAG+GGG + chr1.2:76759561-76759580 MS.gene34372:CDS 40.0%
AGAACAAGCGGATCTCTAAG+GGG + chr1.2:76758465-76758484 MS.gene34372:CDS 45.0%
ATGTTGGCACAAAGGTAGAG+AGG + chr1.2:76760803-76760822 MS.gene34372:CDS 45.0%
CACTAAGTATACTCGGTCCA+AGG - chr1.2:76759128-76759147 None:intergenic 45.0%
CTGACTAGATTGTGCATAGC+AGG - chr1.2:76759914-76759933 None:intergenic 45.0%
GATCCGCTTGTTCTTACCAA+CGG - chr1.2:76758459-76758478 None:intergenic 45.0%
GGAGATTACACTGAGGATGT+TGG + chr1.2:76760787-76760806 MS.gene34372:CDS 45.0%
GGATGAACACGTTCTGCAAT+GGG - chr1.2:76760293-76760312 None:intergenic 45.0%
GGTTCATGGAGATTACACTG+AGG + chr1.2:76760780-76760799 MS.gene34372:intron 45.0%
TGCTGATCCATTTGCCAAGA+AGG + chr1.2:76758591-76758610 MS.gene34372:CDS 45.0%
! ATCTCTAAGGGGAAGAAAGG+TGG + chr1.2:76758476-76758495 MS.gene34372:CDS 45.0%
! CAGTAGTCTTGACATCCACA+TGG - chr1.2:76759825-76759844 None:intergenic 45.0%
! TTGTCAACTAGCGGGTAAAG+TGG - chr1.2:76759251-76759270 None:intergenic 45.0%
!! GGTTGCTATTTGGTCCTTGT+AGG + chr1.2:76760759-76760778 MS.gene34372:intron 45.0%
!! ATATTATGAAAATAAATATT+GGG - chr1.2:76760412-76760431 None:intergenic 5.0%
!!! ATTTTTATTTTTTATTTACA+GGG + chr1.2:76759736-76759755 MS.gene34372:intron 5.0%
!!! TATTTTTATTTTTTATTTAC+AGG + chr1.2:76759735-76759754 MS.gene34372:intron 5.0%
AGAGAGGCCTGCTGATGAAA+TGG + chr1.2:76760819-76760838 MS.gene34372:CDS 50.0%
ATGCGGCGCTATATCGCTAT+CGG - chr1.2:76759365-76759384 None:intergenic 50.0%
CACTGAGGATGTTGGCACAA+AGG + chr1.2:76760795-76760814 MS.gene34372:CDS 50.0%
CGGATGAACACGTTCTGCAA+TGG - chr1.2:76760294-76760313 None:intergenic 50.0%
GTCCAAGGACCTGTTTGGAT+TGG - chr1.2:76759113-76759132 None:intergenic 50.0%
TACCAAGAGGAGAGCTAACC+AGG + chr1.2:76759879-76759898 MS.gene34372:CDS 50.0%
TCTTGCCGACATTCTTCACC+TGG - chr1.2:76758648-76758667 None:intergenic 50.0%
TGAGGTCATTGGTGCGTAAG+TGG + chr1.2:76759782-76759801 MS.gene34372:intron 50.0%
TGCCAATCCAAACAGGTCCT+TGG + chr1.2:76759108-76759127 MS.gene34372:intron 50.0%
TGGTCAGATCCGTAGGAAGA+TGG + chr1.2:76760158-76760177 MS.gene34372:intron 50.0%
! CAAGGCTCCTTCAGTTTTCC+AGG + chr1.2:76758627-76758646 MS.gene34372:CDS 50.0%
! CGGATCTCTAAGGGGAAGAA+AGG + chr1.2:76758473-76758492 MS.gene34372:CDS 50.0%
! GTCTCGTACTCAGGGTACTA+AGG + chr1.2:76758675-76758694 MS.gene34372:CDS 50.0%
! TGGCCGTTGGTAAGAACAAG+CGG + chr1.2:76758453-76758472 MS.gene34372:CDS 50.0%
ACCCTCGTGTCTCGTACTCA+GGG + chr1.2:76758667-76758686 MS.gene34372:CDS 55.0%
ACCCTGAGTACGAGACACGA+GGG - chr1.2:76758671-76758690 None:intergenic 55.0%
ACTCGGTCCAAGGACCTGTT+TGG - chr1.2:76759118-76759137 None:intergenic 55.0%
CATAGCAGGTCCTCTTCACC+TGG - chr1.2:76759900-76759919 None:intergenic 55.0%
GCCTGCTGATGAAATGGCGA+CGG + chr1.2:76760825-76760844 MS.gene34372:CDS 55.0%
GGAGAGCTAACCAGGTGAAG+AGG + chr1.2:76759887-76759906 MS.gene34372:CDS 55.0%
TACCCTGAGTACGAGACACG+AGG - chr1.2:76758672-76758691 None:intergenic 55.0%
TCCGTCGCCATTTCATCAGC+AGG - chr1.2:76760829-76760848 None:intergenic 55.0%
TGCGGCGCTATATCGCTATC+GGG - chr1.2:76759364-76759383 None:intergenic 55.0%
TGCTGATGAAATGGCGACGG+AGG + chr1.2:76760828-76760847 MS.gene34372:CDS 55.0%
! CACCTGGTTAGCTCTCCTCT+TGG - chr1.2:76759884-76759903 None:intergenic 55.0%
GACCCTCGTGTCTCGTACTC+AGG + chr1.2:76758666-76758685 MS.gene34372:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 76758452 76760876 76758452 ID=MS.gene34372
chr1.2 mRNA 76758452 76760876 76758452 ID=MS.gene34372.t1;Parent=MS.gene34372
chr1.2 exon 76758452 76758510 76758452 ID=MS.gene34372.t1.exon1;Parent=MS.gene34372.t1
chr1.2 CDS 76758452 76758510 76758452 ID=cds.MS.gene34372.t1;Parent=MS.gene34372.t1
chr1.2 exon 76758591 76758696 76758591 ID=MS.gene34372.t1.exon2;Parent=MS.gene34372.t1
chr1.2 CDS 76758591 76758696 76758591 ID=cds.MS.gene34372.t1;Parent=MS.gene34372.t1
chr1.2 exon 76759523 76759660 76759523 ID=MS.gene34372.t1.exon3;Parent=MS.gene34372.t1
chr1.2 CDS 76759523 76759660 76759523 ID=cds.MS.gene34372.t1;Parent=MS.gene34372.t1
chr1.2 exon 76759802 76759942 76759802 ID=MS.gene34372.t1.exon4;Parent=MS.gene34372.t1
chr1.2 CDS 76759802 76759942 76759802 ID=cds.MS.gene34372.t1;Parent=MS.gene34372.t1
chr1.2 exon 76760165 76760365 76760165 ID=MS.gene34372.t1.exon5;Parent=MS.gene34372.t1
chr1.2 CDS 76760165 76760365 76760165 ID=cds.MS.gene34372.t1;Parent=MS.gene34372.t1
chr1.2 exon 76760781 76760876 76760781 ID=MS.gene34372.t1.exon6;Parent=MS.gene34372.t1
chr1.2 CDS 76760781 76760876 76760781 ID=cds.MS.gene34372.t1;Parent=MS.gene34372.t1
Gene Sequence

>MS.gene34372

ATGGCCGTTGGTAAGAACAAGCGGATCTCTAAGGGGAAGAAAGGTGGCAAGAAGAAAGCGTTAGTACCAACCCTTTTTTCATTTTTTTACAATTTTCTTTGCATTTTGTATTCATATTCAATTCTGGGTTGATTTGCAGTGCTGATCCATTTGCCAAGAAGGATTGGTATGATATCAAGGCTCCTTCAGTTTTCCAGGTGAAGAATGTCGGCAAGACCCTCGTGTCTCGTACTCAGGGTACTAAGGTACTGTTTTCCGCTTTGTCTTGTTTTTTGTAATTTGATTTGATTTGATTTGTACATTGTTAGGTTGTTTGGTTTGGTTTACTTTAGTTGTGTGCAAATGTATGTCTCTTTTGTATTGATACATTTCATTGAATATTTGAACCCTGATTGTTTAAATAGCTTATGTATTCAAGTGTTTGTTATATAAGTGTTTACTTACAAACTAATTTTATAAGTAAAGATAGAATAAAGTCAAATTGTTTTCACATAAGCTAAAAGATTTTCCTATAAGCTATTATGGAAATAAGCTGCAAAAACATCTCATGGATATGTCATAAGCTTCTTCGTTAAGCTCTTTCAAGTCATAAGCTTTTTCGTTAAGCTCTTTCAAACAGTCACTTAGTTACTTATGTTCGAAGATAAGGTCAAATATGCCAATCCAAACAGGTCCTTGGACCGAGTATACTTAGTGATGCTATTGTGTTCGTGTTGTGTTTTTGTCAGTGTTGTCAATCTTGTAGTGCAGAAAATAGCGGGTTGTTAAAATTCTGCTACACAATAGTGTTGTAGCGCCACTTTACCCGCTAGTTGACAACATTTTTTTTTGCTAAATAGTGTACCATGAAACAATTTTTATACTAAATAACATATCGTGGAACAATAGTGGTTTGTATAAATTCAGCTACCCGATAGCGATATAGCGCCGCATAGCTGCTATTTAACACACTGGTTTTAGTTACAAGGAATAACAAATATGTCTTAGTCTTTCATGGGGTTGCTGAAAGTTGATCAATTGGAGTTTTGCATGCTTAATGCTTATATAGAAAATGGTTGTTTTGAATGACAGATTGCTTCAGATGGACTCAAGCATAGAGTGTTTGAGGTTTCATTGGCTGATCTTCAAGGGGACGAAGAACATGCATTCAGAAAGATTAGGTTGAGAGCTGAAGATGTTCAAGGGAAAAATCTTTTGACAAATTTTTGGGTATGATATGCGGAACCATCTATTTGTCATAATGTTGTTTGTTGGTATTCTTTTTTAATTTGATTTTGAATTTTTATTTTTATTTTTTATTTACAGGGGATGAATTTCACAACTGACAAACTGAGGTCATTGGTGCGTAAGTGGCAAACTCTTATTGAAGCCCATGTGGATGTCAAGACTACTGATAATTACACATTGAGGATGTTTTGCATTGGATTTACCAAGAGGAGAGCTAACCAGGTGAAGAGGACCTGCTATGCACAATCTAGTCAGATTAGACAGGTAGATACATTGATGCTTTTCTTTTCAAATCATACTAGTTTTCTAGATGCAGATATTAGTGATTCAACATGGTATCCAACACATATTTTAGGTAAAACCTTTCTTTTATGAAATGCTGCTATATATAAAGAATAAATCACTTGTTTTGAACTTATGGTCATGCTTTGTCTTCTTCTAAGATATTTCTTATTAGTTACTAATGTAGCACCTTTATTTGGTCAGATCCGTAGGAAGATGGTTGAGATCATGATCAACCAAGCATCATCTTGTGATTTGAAGGGATTGGTCCTCAAATTCATTCCCGAGATGATTGGGAAAGAGATCGAGAAAGCCACGTCTAGTATTTACCCATTGCAGAACGTGTTCATCCGAAAAGTGAAGATCCTTAAAGCTCCCAAGTTTGATCTTGGAAAATTGATGGAGGTATTTTTTCGAAACAACTTTTTTATGTTTGTTCTCATTCACACCCAATATTTATTTTCATAATATCGTTCCTGCACAAAAACTTTGGTTGTTACTTTGGTCACTGATGTTATTTGCTTGACGAGATGAACTCTTTAATATAACCAATTACTTCAAACTTTCCAAAAGCTCTCTATTCGGTTTCTCCATAAACACCTTCAGATTATTAAAAGCTATTTCACAAGTTCAAAACTAAATACTTACTAATCCAATAAGTGCTTGTGTGAAAACAAACTTTATCATATTGCCTTTTAAATTTTAATTTTTATTTCCTTCTGTTCTCTTTTAGCTTGAGTATGCAGTTGTCACATGTACAAACTTATAACCATCTAAAAAGTGTCATTGATTTGATTTGGTTGCTATTTGGTCCTTGTAGGTTCATGGAGATTACACTGAGGATGTTGGCACAAAGGTAGAGAGGCCTGCTGATGAAATGGCGACGGAGGAACCTACTGAAATTGTTGGAGCTTGA
Protein sequence

>MS.gene34372.t1

MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASDGLKHRVFEVSLADLQGDEEHAFRKIRLRAEDVQGKNLLTNFWWQTLIEAHVDVKTTDNYTLRMFCIGFTKRRANQVKRTCYAQSSQIRQIRRKMVEIMINQASSCDLKGLVLKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYTEDVGTKVERPADEMATEEPTEIVGA