AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene043821

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene043821.t1 MTR_1g103100 97.701 261 6 0 1 261 1 261 0.0 530
MS.gene043821.t1 MTR_3g012040 95.785 261 11 0 1 261 1 261 0.0 497
MS.gene043821.t1 MTR_5g006440 94.636 261 14 0 1 261 1 261 9.71e-179 492
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene043821.t1 AT3G04840 85.115 262 38 1 1 261 1 262 1.68e-163 453
MS.gene043821.t1 AT4G34670 85.496 262 37 1 1 261 1 262 4.36e-163 452

Find 78 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCAAACTTGGGAGCTTTA+AGG 0.168578 2.2:+27765754 None:intergenic
AATATCATACCAATCCTTCT+TGG 0.295389 2.2:+27767680 None:intergenic
ATTTGGTCCTTGTAGGTTCA+TGG 0.297913 2.2:-27765326 MS.gene043821:intron
GAAGGATTGGTATGATATTA+AGG 0.312711 2.2:-27767676 MS.gene043821:CDS
CTGACTAGATTGTGCATAAC+AGG 0.339955 2.2:+27766170 None:intergenic
AAAGCTCCCAAGTTTGATCT+TGG 0.357514 2.2:-27765750 MS.gene043821:CDS
TAAGAACAAGCGGATCTCTA+AGG 0.365175 2.2:-27767833 MS.gene043821:CDS
GTTTGATCTTGGAAAATTGA+TGG 0.369245 2.2:-27765739 MS.gene043821:CDS
AAATTCATTCCCGAGATGAT+TGG 0.381702 2.2:-27765846 MS.gene043821:CDS
GGGACGAAGACCATGCATTC+AGG 0.393353 2.2:-27766496 MS.gene043821:CDS
ATCCTGTGATTTGAAGGAAT+TGG 0.402781 2.2:-27765874 MS.gene043821:CDS
GACCCTCGTGTCTCGTACTC+AGG 0.406163 2.2:-27767619 MS.gene043821:CDS
TACCAATCCTTCTTGGCAAA+TGG 0.412105 2.2:+27767687 None:intergenic
TAGAGTGTTTGAGGTTTCAT+TGG 0.413434 2.2:-27766531 MS.gene043821:CDS
GTTTCATTGGCTGATCTTCA+AGG 0.434675 2.2:-27766518 MS.gene043821:CDS
TGCTGATCCATTTGCCAAGA+AGG 0.436339 2.2:-27767694 MS.gene043821:CDS
AATTCATTCCCGAGATGATT+GGG 0.437177 2.2:-27765845 MS.gene043821:CDS
AGCATCATCCTGTGATTTGA+AGG 0.439297 2.2:-27765880 MS.gene043821:CDS
TACCAAGAGGAGAGCTAACC+AGG 0.440122 2.2:-27766202 MS.gene043821:CDS
TCCGTCACCATTTCATCAGC+AGG 0.444686 2.2:+27765266 None:intergenic
ACTCAAGCATAGAGTGTTTG+AGG 0.454600 2.2:-27766540 MS.gene043821:CDS
ACCATGCATTCAGGAAGATT+AGG 0.462005 2.2:-27766487 MS.gene043821:CDS
ATCCATTTGCCAAGAAGGAT+TGG 0.465718 2.2:-27767689 MS.gene043821:CDS
ATCTCCTTCCCAATCATCTC+GGG 0.483111 2.2:+27765837 None:intergenic
GAGGAACCTACTGAAATTGT+TGG 0.484047 2.2:-27765245 MS.gene043821:CDS
TGTTCAGATCCGTAGGAAGA+TGG 0.490433 2.2:-27765922 MS.gene043821:intron
CACCTGGTTAGCTCTCCTCT+TGG 0.502596 2.2:+27766200 None:intergenic
AACTGACAAACTGAGGTCAT+TGG 0.506332 2.2:-27766310 MS.gene043821:CDS
TGAGGTCATTGGTGCGTAAG+TGG 0.507827 2.2:-27766299 MS.gene043821:CDS
CGGATCTCTAAGGGGAAGAA+AGG 0.516719 2.2:-27767823 MS.gene043821:CDS
AAGAACAAGCGGATCTCTAA+GGG 0.521243 2.2:-27767832 MS.gene043821:CDS
CTTGTTCTTACCAACGGCCA+TGG 0.523346 2.2:+27767846 None:intergenic
ACCTAATCTTCCTGAATGCA+TGG 0.523822 2.2:+27766486 None:intergenic
TTTCATTGGCTGATCTTCAA+GGG 0.523908 2.2:-27766517 MS.gene043821:CDS
TCATCTCGGGAATGAATTTG+CGG 0.528925 2.2:+27765850 None:intergenic
AGAGAGGCCTGCTGATGAAA+TGG 0.532099 2.2:-27765273 MS.gene043821:CDS
TCTTGCCGACATTCTTCACC+TGG 0.534041 2.2:+27767640 None:intergenic
AATCTCCTTCCCAATCATCT+CGG 0.535678 2.2:+27765836 None:intergenic
TTGAGAGCTGAAGATGTTCA+AGG 0.537527 2.2:-27766464 MS.gene043821:CDS
CGGATGAACACATTCTGCAA+GGG 0.539130 2.2:+27765789 None:intergenic
TCAAATCACAGGATGATGCT+TGG 0.544201 2.2:+27765883 None:intergenic
CATAACAGGTCCTCTTCACC+TGG 0.545447 2.2:+27766184 None:intergenic
GGAGAGCTAACCAGGTGAAG+AGG 0.557404 2.2:-27766194 MS.gene043821:CDS
GAATGACAGATTGCTTCAGA+TGG 0.560187 2.2:-27766563 MS.gene043821:intron
CTCTGAGGATGTTGGCACAA+AGG 0.562498 2.2:-27765297 MS.gene043821:CDS
CTTTATTTGTTCAGATCCGT+AGG 0.563835 2.2:-27765929 MS.gene043821:intron
GATCCGCTTGTTCTTACCAA+CGG 0.569816 2.2:+27767840 None:intergenic
GACCAATTCCTTCAAATCAC+AGG 0.574407 2.2:+27765872 None:intergenic
TCGGATGAACACATTCTGCA+AGG 0.575354 2.2:+27765788 None:intergenic
ACAATCTAGTCAGATTAGAC+AGG 0.580594 2.2:-27766160 MS.gene043821:intron
CAAGCTCCAACAATTTCAGT+AGG 0.582102 2.2:+27765239 None:intergenic
GGAGATTACTCTGAGGATGT+TGG 0.587473 2.2:-27765305 MS.gene043821:CDS
TTCTTCACCTGGAAAACTGA+AGG 0.588083 2.2:+27767651 None:intergenic
TGATCTCAACCATCTTCCTA+CGG 0.590794 2.2:+27765913 None:intergenic
TTCATTGGCTGATCTTCAAG+GGG 0.595752 2.2:-27766516 MS.gene043821:CDS
CAGTAGTCTTGACATCCACA+TGG 0.596992 2.2:+27766259 None:intergenic
AACAGTGAAACCATGGCCGT+TGG 0.599680 2.2:-27767856 None:intergenic
CATTCCCGAGATGATTGGGA+AGG 0.605231 2.2:-27765841 MS.gene043821:CDS
TGATCTTGGAAAATTGATGG+AGG 0.612140 2.2:-27765736 MS.gene043821:intron
TGAGAGCTGAAGATGTTCAA+GGG 0.612312 2.2:-27766463 MS.gene043821:CDS
ACCCTCGTGTCTCGTACTCA+GGG 0.615233 2.2:-27767618 MS.gene043821:CDS
ATCTCTAAGGGGAAGAAAGG+TGG 0.621403 2.2:-27767820 MS.gene043821:CDS
AACTCTTGTTGAAGCCCATG+TGG 0.622205 2.2:-27766274 MS.gene043821:CDS
GTCTCGTACTCAGGGTACCA+AGG 0.623684 2.2:-27767610 MS.gene043821:intron
TGGCCGTTGGTAAGAACAAG+CGG 0.624911 2.2:-27767843 MS.gene043821:CDS
GCCTGCTGATGAAATGGTGA+CGG 0.629382 2.2:-27765267 MS.gene043821:CDS
GGATGAACACATTCTGCAAG+GGG 0.631103 2.2:+27765790 None:intergenic
CAAGGGGTAAATACTAGACG+TGG 0.633754 2.2:+27765806 None:intergenic
CTACTGATAATTACACATTG+AGG 0.636083 2.2:-27766242 MS.gene043821:CDS
TTTGCATTGGCTTTACCAAG+AGG 0.642280 2.2:-27766215 MS.gene043821:CDS
TACCCTGAGTACGAGACACG+AGG 0.648373 2.2:+27767616 None:intergenic
ATGTTGGCACAAAGGTAGAG+AGG 0.654238 2.2:-27765289 MS.gene043821:CDS
ATTTCACAACTGACAAACTG+AGG 0.681977 2.2:-27766317 MS.gene043821:CDS
TGCTGATGAAATGGTGACGG+AGG 0.686062 2.2:-27765264 MS.gene043821:CDS
ACCCTGAGTACGAGACACGA+GGG 0.700568 2.2:+27767617 None:intergenic
AGTAGTCTTGACATCCACAT+GGG 0.706350 2.2:+27766260 None:intergenic
AGAACAAGCGGATCTCTAAG+GGG 0.721950 2.2:-27767831 MS.gene043821:CDS
GGTTCATGGAGATTACTCTG+AGG 0.741731 2.2:-27765312 MS.gene043821:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATATTATGAAAATAAATAT+TGG + chr2.2:27767415-27767434 None:intergenic 10.0%
!!! ATTTTTTATTTTATTTACAG+GGG - chr2.2:27766738-27766757 MS.gene043821:intron 10.0%
!!! GATTTTTTATTTTATTTACA+GGG - chr2.2:27766737-27766756 MS.gene043821:intron 10.0%
!!! TGATTTTTTATTTTATTTAC+AGG - chr2.2:27766736-27766755 MS.gene043821:intron 10.0%
!!! TTAGTATAAAAATTGTTTTA+TGG + chr2.2:27765985-27766004 None:intergenic 10.0%
!! GTAAAAAATGAAAATTTGAA+TGG + chr2.2:27765325-27765344 None:intergenic 15.0%
!! AAAAAAATGTTGTCAAATAG+CGG + chr2.2:27765948-27765967 None:intergenic 20.0%
!! ATATATAAAGAAGAAATCAC+TGG - chr2.2:27767065-27767084 MS.gene043821:intron 20.0%
!! ATATTCAATGAAAGTAAGAT+AGG + chr2.2:27765576-27765595 None:intergenic 20.0%
!! CTTAATGCTTATTTAGAAAA+TGG - chr2.2:27766489-27766508 MS.gene043821:CDS 20.0%
!!! AAAATCTTTTGACAAATTTC+TGG - chr2.2:27766643-27766662 MS.gene043821:intron 20.0%
!!! AAATCTTTTGACAAATTTCT+GGG - chr2.2:27766644-27766663 MS.gene043821:intron 20.0%
!!! ATTTGAATGGATTTTGAAAA+AGG + chr2.2:27765312-27765331 None:intergenic 20.0%
!!! TCTTGTCTTTTAAATAATGT+TGG + chr2.2:27766187-27766206 None:intergenic 20.0%
!!! TTTGAATGGATTTTGAAAAA+GGG + chr2.2:27765311-27765330 None:intergenic 20.0%
! AAAAAATGTTGTCAAATAGC+GGG + chr2.2:27765947-27765966 None:intergenic 25.0%
! AAACCATTATAGAAAATGCA+AGG + chr2.2:27765354-27765373 None:intergenic 25.0%
! AACAGCATTTCATAAAAGAA+AGG + chr2.2:27767045-27767064 None:intergenic 25.0%
! AATAATCTGAAGGTTGTTTA+TGG + chr2.2:27767554-27767573 None:intergenic 25.0%
! AATTACAAAAAACATGACAG+AGG + chr2.2:27765507-27765526 None:intergenic 25.0%
! ACAACATTATGACAAATAGA+TGG + chr2.2:27766687-27766706 None:intergenic 25.0%
! ACTTTCATTGAATATCTATC+TGG - chr2.2:27765581-27765600 MS.gene043821:intron 25.0%
! ATATATTAGTGTATCCAACA+CGG - chr2.2:27766994-27767013 MS.gene043821:intron 25.0%
! ATTAAGCTATCTAAACAATC+AGG + chr2.2:27765613-27765632 None:intergenic 25.0%
! ATTATGACAAATAGATGGTT+CGG + chr2.2:27766682-27766701 None:intergenic 25.0%
! GAGAATAAAAATGAAGACAT+GGG + chr2.2:27766290-27766309 None:intergenic 25.0%
! GTTGCTGAAATTTGATAAAT+TGG - chr2.2:27766455-27766474 MS.gene043821:CDS 25.0%
! TATCACCTGAATAAAAACTT+TGG - chr2.2:27767431-27767450 MS.gene043821:intron 25.0%
! TTAAGCTATCTAAACAATCA+GGG + chr2.2:27765612-27765631 None:intergenic 25.0%
! TTATTTCCATAATAGCCTAT+AGG + chr2.2:27765748-27765767 None:intergenic 25.0%
! TTGAACTTGTAATAATCTGA+AGG + chr2.2:27767564-27767583 None:intergenic 25.0%
!! AAAAACTTTGGTTGTTACTT+TGG - chr2.2:27767443-27767462 MS.gene043821:intron 25.0%
!! AAATATGTCTTAGTCTTTCA+TGG - chr2.2:27766431-27766450 MS.gene043821:intron 25.0%
!! AACAACCAAAGTTTTTATTC+AGG + chr2.2:27767439-27767458 None:intergenic 25.0%
!! AAGCTAAAAGTTTTTCCTAT+AGG - chr2.2:27765730-27765749 MS.gene043821:intron 25.0%
!! AATATGTCTTAGTCTTTCAT+GGG - chr2.2:27766432-27766451 MS.gene043821:intron 25.0%
!! AATTTTCCAAGATCAAACTT+GGG + chr2.2:27767341-27767360 None:intergenic 25.0%
!! TTATACTAAAAAGCATATCG+TGG - chr2.2:27765996-27766015 MS.gene043821:intron 25.0%
!! TTTCCTTGCATTTTCTATAA+TGG - chr2.2:27765348-27765367 MS.gene043821:intron 25.0%
!! TTTGGAAAGTTTGAAGTAAT+TGG + chr2.2:27767512-27767531 None:intergenic 25.0%
!! TTTGTCATAATGTTGTTTGT+TGG - chr2.2:27766691-27766710 MS.gene043821:intron 25.0%
!!! CTGTCATGTTTTTTGTAATT+TGG - chr2.2:27765507-27765526 MS.gene043821:intron 25.0%
!!! GGTTTGATTTTGTTTCTATT+TGG - chr2.2:27767739-27767758 MS.gene043821:intron 25.0%
!!! TGATTGTTGTTTTATAAGTG+TGG + chr2.2:27766115-27766134 None:intergenic 25.0%
AATATCATACCAATCCTTCT+TGG + chr2.2:27765405-27765424 None:intergenic 30.0%
ACTATAATGTCACTAAGTGA+CGG + chr2.2:27765826-27765845 None:intergenic 30.0%
ACTTGTAACCATCTAAAAAG+TGG - chr2.2:27767712-27767731 MS.gene043821:intron 30.0%
CGAGAATAAAAATGAAGACA+TGG + chr2.2:27766291-27766310 None:intergenic 30.0%
CTACTGATAATTACACATTG+AGG - chr2.2:27766840-27766859 MS.gene043821:intron 30.0%
GTTTGATCTTGGAAAATTGA+TGG - chr2.2:27767343-27767362 MS.gene043821:intron 30.0%
TAAGCTGAAAAAACATCTCA+TGG - chr2.2:27765765-27765784 MS.gene043821:CDS 30.0%
TCATGCTAAAAGAGAACATA+AGG + chr2.2:27767669-27767688 None:intergenic 30.0%
! ATATGTCTTAGTCTTTCATG+GGG - chr2.2:27766433-27766452 MS.gene043821:intron 30.0%
! CAATTTTCCAAGATCAAACT+TGG + chr2.2:27767342-27767361 None:intergenic 30.0%
! GAAGGATTGGTATGATATTA+AGG - chr2.2:27765406-27765425 MS.gene043821:intron 30.0%
! GTTTTCACACAAGCATTTAT+TGG + chr2.2:27767605-27767624 None:intergenic 30.0%
! GTTTTTCCTATAGGCTATTA+TGG - chr2.2:27765739-27765758 MS.gene043821:CDS 30.0%
!! AATGGATTTTGAAAAAGGGT+TGG + chr2.2:27765307-27765326 None:intergenic 30.0%
!! CTTTAAGGATCTTCACTTTT+CGG + chr2.2:27767316-27767335 None:intergenic 30.0%
!! GGTTTGATTTGTACATTGTT+AGG - chr2.2:27765528-27765547 MS.gene043821:intron 30.0%
!!! TCTATTTAACCCATTGGTTT+TGG - chr2.2:27766394-27766413 MS.gene043821:intron 30.0%
AAATTCATTCCCGAGATGAT+TGG - chr2.2:27767236-27767255 MS.gene043821:intron 35.0%
AACCATCTAAAAAGTGGCTT+TGG - chr2.2:27767718-27767737 MS.gene043821:intron 35.0%
AACTTCCATTCTCATGTAAG+TGG + chr2.2:27766337-27766356 None:intergenic 35.0%
AATTCATTCCCGAGATGATT+GGG - chr2.2:27767237-27767256 MS.gene043821:intron 35.0%
ACAATCTAGTCAGATTAGAC+AGG - chr2.2:27766922-27766941 MS.gene043821:intron 35.0%
AGATAGATATTTCGAGCAGA+GGG + chr2.2:27766073-27766092 None:intergenic 35.0%
ATCCTGTGATTTGAAGGAAT+TGG - chr2.2:27767208-27767227 MS.gene043821:intron 35.0%
ATTCTCATGTAAGTGGAAAG+AGG + chr2.2:27766330-27766349 None:intergenic 35.0%
ATTTCACAACTGACAAACTG+AGG - chr2.2:27766765-27766784 MS.gene043821:intron 35.0%
CGAAATATCTATCTAGCACT+GGG - chr2.2:27766079-27766098 MS.gene043821:intron 35.0%
CTACGGATCTGAACAAATAA+AGG + chr2.2:27767155-27767174 None:intergenic 35.0%
CTAGCTTCTATTTAACCCAT+TGG - chr2.2:27766388-27766407 MS.gene043821:intron 35.0%
CTTTCCAAAAGCTCTCTATT+CGG - chr2.2:27767523-27767542 MS.gene043821:intron 35.0%
GACAAGAAAAAAGACTGAAC+TGG - chr2.2:27766200-27766219 MS.gene043821:CDS 35.0%
GTAGATCACATATCGCTATA+GGG + chr2.2:27766051-27766070 None:intergenic 35.0%
TAGATAGATATTTCGAGCAG+AGG + chr2.2:27766074-27766093 None:intergenic 35.0%
TCCTTGTAACCAAAACCAAT+GGG + chr2.2:27766406-27766425 None:intergenic 35.0%
TCGAAATATCTATCTAGCAC+TGG - chr2.2:27766078-27766097 MS.gene043821:intron 35.0%
TCTTTCCACTTACATGAGAA+TGG - chr2.2:27766329-27766348 MS.gene043821:intron 35.0%
TGAACTGGCATTATCATGAT+GGG - chr2.2:27766215-27766234 MS.gene043821:CDS 35.0%
TGATCTTGGAAAATTGATGG+AGG - chr2.2:27767346-27767365 MS.gene043821:intron 35.0%
TTCCTTGTAACCAAAACCAA+TGG + chr2.2:27766407-27766426 None:intergenic 35.0%
! ACATTGAGGATGTTTTGCAT+TGG - chr2.2:27766854-27766873 MS.gene043821:intron 35.0%
! CTTTATTTGTTCAGATCCGT+AGG - chr2.2:27767153-27767172 MS.gene043821:intron 35.0%
! TAGAGTGTTTGAGGTTTCAT+TGG - chr2.2:27766551-27766570 MS.gene043821:CDS 35.0%
! TGTTTCTATTTGGTCCTTGT+AGG - chr2.2:27767749-27767768 MS.gene043821:intron 35.0%
! TTTCATTGGCTGATCTTCAA+GGG - chr2.2:27766565-27766584 MS.gene043821:intron 35.0%
!! AATAATGTTGGTCTTGCTTG+TGG + chr2.2:27766175-27766194 None:intergenic 35.0%
!! ATCCAACACATGTTTTAGGT+AGG - chr2.2:27767018-27767037 MS.gene043821:intron 35.0%
!! CAATGGGTTAAATAGAAGCT+AGG + chr2.2:27766390-27766409 None:intergenic 35.0%
!! TTTCTAAAGTATCGACTCCA+GGG - chr2.2:27766253-27766272 MS.gene043821:CDS 35.0%
!!! AAATCACTGGTTTTGAACCT+AGG - chr2.2:27767078-27767097 MS.gene043821:intron 35.0%
!!! AACCAAAGCCACTTTTTAGA+TGG + chr2.2:27767723-27767742 None:intergenic 35.0%
!!! TTTTCTAAAGTATCGACTCC+AGG - chr2.2:27766252-27766271 MS.gene043821:CDS 35.0%
AAAGCTCCCAAGTTTGATCT+TGG - chr2.2:27767332-27767351 MS.gene043821:intron 40.0%
AACTGACAAACTGAGGTCAT+TGG - chr2.2:27766772-27766791 MS.gene043821:intron 40.0%
AAGAACAAGCGGATCTCTAA+GGG - chr2.2:27765250-27765269 MS.gene043821:CDS 40.0%
AATCTCCTTCCCAATCATCT+CGG + chr2.2:27767249-27767268 None:intergenic 40.0%
ACCATGCATTCAGGAAGATT+AGG - chr2.2:27766595-27766614 MS.gene043821:intron 40.0%
ACCTAATCTTCCTGAATGCA+TGG + chr2.2:27766599-27766618 None:intergenic 40.0%
AGAAGACAAAGCATGATCCT+AGG + chr2.2:27767098-27767117 None:intergenic 40.0%
AGCATCATCCTGTGATTTGA+AGG - chr2.2:27767202-27767221 MS.gene043821:intron 40.0%
AGCTATCTAAACAATCAGGG+AGG + chr2.2:27765609-27765628 None:intergenic 40.0%
ATCCATTTGCCAAGAAGGAT+TGG - chr2.2:27765393-27765412 MS.gene043821:intron 40.0%
ATTTGGTCCTTGTAGGTTCA+TGG - chr2.2:27767756-27767775 MS.gene043821:intron 40.0%
CAAGCTCCAACAATTTCAGT+AGG + chr2.2:27767846-27767865 None:intergenic 40.0%
CTGAACTGGCATTATCATGA+TGG - chr2.2:27766214-27766233 MS.gene043821:CDS 40.0%
CTGACTAGATTGTGCATAAC+AGG + chr2.2:27766915-27766934 None:intergenic 40.0%
GAATGACAGATTGCTTCAGA+TGG - chr2.2:27766519-27766538 MS.gene043821:CDS 40.0%
GACAGAGGAAAACAATACCT+TGG + chr2.2:27765492-27765511 None:intergenic 40.0%
GACCAATTCCTTCAAATCAC+AGG + chr2.2:27767213-27767232 None:intergenic 40.0%
GAGGAACCTACTGAAATTGT+TGG - chr2.2:27767837-27767856 MS.gene043821:CDS 40.0%
GATCAAACTTGGGAGCTTTA+AGG + chr2.2:27767331-27767350 None:intergenic 40.0%
GCTATCTAAACAATCAGGGA+GGG + chr2.2:27765608-27765627 None:intergenic 40.0%
GGTAGATCACATATCGCTAT+AGG + chr2.2:27766052-27766071 None:intergenic 40.0%
GTAATCTCCATGAACCTACA+AGG + chr2.2:27767766-27767785 None:intergenic 40.0%
GTCCTACCTAAAACATGTGT+TGG + chr2.2:27767023-27767042 None:intergenic 40.0%
TAAGAACAAGCGGATCTCTA+AGG - chr2.2:27765249-27765268 MS.gene043821:CDS 40.0%
TACCAATCCTTCTTGGCAAA+TGG + chr2.2:27765398-27765417 None:intergenic 40.0%
TCAAATCACAGGATGATGCT+TGG + chr2.2:27767202-27767221 None:intergenic 40.0%
TCATCTCGGGAATGAATTTG+CGG + chr2.2:27767235-27767254 None:intergenic 40.0%
TCTTGTAGTGCAGAAAACAG+CGG - chr2.2:27765877-27765896 MS.gene043821:CDS 40.0%
TGAGAGCTGAAGATGTTCAA+GGG - chr2.2:27766619-27766638 MS.gene043821:intron 40.0%
TGATCTCAACCATCTTCCTA+CGG + chr2.2:27767172-27767191 None:intergenic 40.0%
TTCTTCACCTGGAAAACTGA+AGG + chr2.2:27765434-27765453 None:intergenic 40.0%
TTGAGAGCTGAAGATGTTCA+AGG - chr2.2:27766618-27766637 MS.gene043821:intron 40.0%
! ACTCAAGCATAGAGTGTTTG+AGG - chr2.2:27766542-27766561 MS.gene043821:CDS 40.0%
! AGTAGTCTTGACATCCACAT+GGG + chr2.2:27766825-27766844 None:intergenic 40.0%
! CGGTATCCAACACATGTTTT+AGG - chr2.2:27767014-27767033 MS.gene043821:intron 40.0%
! GAAACCGAATAGAGAGCTTT+TGG + chr2.2:27767530-27767549 None:intergenic 40.0%
! GTTTCATTGGCTGATCTTCA+AGG - chr2.2:27766564-27766583 MS.gene043821:intron 40.0%
! GTTTTCCAGGTGAAGAATGT+CGG - chr2.2:27765437-27765456 MS.gene043821:intron 40.0%
! TTCATTGGCTGATCTTCAAG+GGG - chr2.2:27766566-27766585 MS.gene043821:intron 40.0%
!! TTCTAAAGTATCGACTCCAG+GGG - chr2.2:27766254-27766273 MS.gene043821:CDS 40.0%
!! TTGGTTGTTACTTTGGTCAC+TGG - chr2.2:27767450-27767469 MS.gene043821:intron 40.0%
!! TTGTCAAATAGCGGGTAAAG+TGG + chr2.2:27765939-27765958 None:intergenic 40.0%
!! TTTGCATTGGCTTTACCAAG+AGG - chr2.2:27766867-27766886 MS.gene043821:intron 40.0%
!!! ACCCATTGGTTTTGGTTACA+AGG - chr2.2:27766402-27766421 MS.gene043821:intron 40.0%
AACTCTTGTTGAAGCCCATG+TGG - chr2.2:27766808-27766827 MS.gene043821:intron 45.0%
ACATGTGTTGGATACCGTGT+TGG + chr2.2:27767011-27767030 None:intergenic 45.0%
AGAACAAGCGGATCTCTAAG+GGG - chr2.2:27765251-27765270 MS.gene043821:CDS 45.0%
ATCTCCTTCCCAATCATCTC+GGG + chr2.2:27767248-27767267 None:intergenic 45.0%
ATGTTGGCACAAAGGTAGAG+AGG - chr2.2:27767793-27767812 MS.gene043821:intron 45.0%
CAAGGGGTAAATACTAGACG+TGG + chr2.2:27767279-27767298 None:intergenic 45.0%
CGGATGAACACATTCTGCAA+GGG + chr2.2:27767296-27767315 None:intergenic 45.0%
CTTGTAGTGCAGAAAACAGC+GGG - chr2.2:27765878-27765897 MS.gene043821:CDS 45.0%
GATCCGCTTGTTCTTACCAA+CGG + chr2.2:27765245-27765264 None:intergenic 45.0%
GGATGAACACATTCTGCAAG+GGG + chr2.2:27767295-27767314 None:intergenic 45.0%
GGTTCATGGAGATTACTCTG+AGG - chr2.2:27767770-27767789 MS.gene043821:intron 45.0%
TCGGATGAACACATTCTGCA+AGG + chr2.2:27767297-27767316 None:intergenic 45.0%
TGCTGATCCATTTGCCAAGA+AGG - chr2.2:27765388-27765407 MS.gene043821:intron 45.0%
TGTTCAGATCCGTAGGAAGA+TGG - chr2.2:27767160-27767179 MS.gene043821:intron 45.0%
! ATCTCTAAGGGGAAGAAAGG+TGG - chr2.2:27765262-27765281 MS.gene043821:CDS 45.0%
! CAGTAGTCTTGACATCCACA+TGG + chr2.2:27766826-27766845 None:intergenic 45.0%
! GGAGATTACTCTGAGGATGT+TGG - chr2.2:27767777-27767796 MS.gene043821:intron 45.0%
! TAAGGCTCCTTCAGTTTTCC+AGG - chr2.2:27765424-27765443 MS.gene043821:intron 45.0%
!! ATATTATGAAAATAAATATT+GGG + chr2.2:27767414-27767433 None:intergenic 5.0%
!!! AACAAAATTAAAATTTTAAA+AGG + chr2.2:27767644-27767663 None:intergenic 5.0%
AGAGAGGCCTGCTGATGAAA+TGG - chr2.2:27767809-27767828 MS.gene043821:CDS 50.0%
CATAACAGGTCCTCTTCACC+TGG + chr2.2:27766901-27766920 None:intergenic 50.0%
CATTCCCGAGATGATTGGGA+AGG - chr2.2:27767241-27767260 MS.gene043821:intron 50.0%
GCCTGCTGATGAAATGGTGA+CGG - chr2.2:27767815-27767834 MS.gene043821:CDS 50.0%
TACCAAGAGGAGAGCTAACC+AGG - chr2.2:27766880-27766899 MS.gene043821:intron 50.0%
TCCGTCACCATTTCATCAGC+AGG + chr2.2:27767819-27767838 None:intergenic 50.0%
TCTTGCCGACATTCTTCACC+TGG + chr2.2:27765445-27765464 None:intergenic 50.0%
TGAGGTCATTGGTGCGTAAG+TGG - chr2.2:27766783-27766802 MS.gene043821:intron 50.0%
! CGGATCTCTAAGGGGAAGAA+AGG - chr2.2:27765259-27765278 MS.gene043821:CDS 50.0%
! CTCTGAGGATGTTGGCACAA+AGG - chr2.2:27767785-27767804 MS.gene043821:intron 50.0%
! TGGCCGTTGGTAAGAACAAG+CGG - chr2.2:27765239-27765258 MS.gene043821:CDS 50.0%
!! ATGTTGGTCTTGCTTGTGGC+AGG + chr2.2:27766171-27766190 None:intergenic 50.0%
!! TGCTGATGAAATGGTGACGG+AGG - chr2.2:27767818-27767837 MS.gene043821:CDS 50.0%
!! TGTTGGTCTTGCTTGTGGCA+GGG + chr2.2:27766170-27766189 None:intergenic 50.0%
ACCCTCGTGTCTCGTACTCA+GGG - chr2.2:27765464-27765483 MS.gene043821:intron 55.0%
ACCCTGAGTACGAGACACGA+GGG + chr2.2:27765468-27765487 None:intergenic 55.0%
CATGGGAATGTCATGTCCCC+TGG + chr2.2:27766273-27766292 None:intergenic 55.0%
GGAGAGCTAACCAGGTGAAG+AGG - chr2.2:27766888-27766907 MS.gene043821:intron 55.0%
GGGACGAAGACCATGCATTC+AGG - chr2.2:27766586-27766605 MS.gene043821:intron 55.0%
TACCCTGAGTACGAGACACG+AGG + chr2.2:27765469-27765488 None:intergenic 55.0%
! CACCTGGTTAGCTCTCCTCT+TGG + chr2.2:27766885-27766904 None:intergenic 55.0%
! GTCTCGTACTCAGGGTACCA+AGG - chr2.2:27765472-27765491 MS.gene043821:intron 55.0%
CTTGTGGCAGGGCAGAAGTG+GGG + chr2.2:27766159-27766178 None:intergenic 60.0%
GACCCTCGTGTCTCGTACTC+AGG - chr2.2:27765463-27765482 MS.gene043821:intron 60.0%
GCTTGTGGCAGGGCAGAAGT+GGG + chr2.2:27766160-27766179 None:intergenic 60.0%
TGCTTGTGGCAGGGCAGAAG+TGG + chr2.2:27766161-27766180 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 27765238 27767866 27765238 ID=MS.gene043821
chr2.2 mRNA 27765238 27767866 27765238 ID=MS.gene043821.t1;Parent=MS.gene043821
chr2.2 exon 27767808 27767866 27767808 ID=MS.gene043821.t1.exon1;Parent=MS.gene043821.t1
chr2.2 CDS 27767808 27767866 27767808 ID=cds.MS.gene043821.t1;Parent=MS.gene043821.t1
chr2.2 exon 27767611 27767716 27767611 ID=MS.gene043821.t1.exon2;Parent=MS.gene043821.t1
chr2.2 CDS 27767611 27767716 27767611 ID=cds.MS.gene043821.t1;Parent=MS.gene043821.t1
chr2.2 exon 27766439 27766576 27766439 ID=MS.gene043821.t1.exon3;Parent=MS.gene043821.t1
chr2.2 CDS 27766439 27766576 27766439 ID=cds.MS.gene043821.t1;Parent=MS.gene043821.t1
chr2.2 exon 27766161 27766346 27766161 ID=MS.gene043821.t1.exon4;Parent=MS.gene043821.t1
chr2.2 CDS 27766161 27766346 27766161 ID=cds.MS.gene043821.t1;Parent=MS.gene043821.t1
chr2.2 exon 27765737 27765937 27765737 ID=MS.gene043821.t1.exon5;Parent=MS.gene043821.t1
chr2.2 CDS 27765737 27765937 27765737 ID=cds.MS.gene043821.t1;Parent=MS.gene043821.t1
chr2.2 exon 27765238 27765333 27765238 ID=MS.gene043821.t1.exon6;Parent=MS.gene043821.t1
chr2.2 CDS 27765238 27765333 27765238 ID=cds.MS.gene043821.t1;Parent=MS.gene043821.t1
Gene Sequence

>MS.gene043821

ATGGCCGTTGGTAAGAACAAGCGGATCTCTAAGGGGAAGAAAGGTGGCAAGAAGAAAGCGTTAGTACCAACCCTTTTTCAAAATCCATTCAAATTTTCATTTTTTACAATTTTCCTTGCATTTTCTATAATGGTTTCTATGAACTTGCAGTGCTGATCCATTTGCCAAGAAGGATTGGTATGATATTAAGGCTCCTTCAGTTTTCCAGGTGAAGAATGTCGGCAAGACCCTCGTGTCTCGTACTCAGGGTACCAAGGTATTGTTTTCCTCTGTCATGTTTTTTGTAATTTGGTTTGATTTGTACATTGTTAGGTTATTGTACGAATTTATATGATCCTATCTTACTTTCATTGAATATCTATCTGGACCCTCCCTGATTGTTTAGATAGCTTAATTAAGAGCTTTTATATTTAAGTAGTGTTGTTATATAAGTGTTTATGTATAAACTATTTTTATAACTAAAGATAGAATAAAGTCAAATTATTTTCACATAAGCTAAAAGTTTTTCCTATAGGCTATTATGGAAATAAGCTGAAAAAACATCTCATGGATATGTCATAAGCTTTTTCGTTAAGCTCTTTCAAACCGTCACTTAGTGACATTATAGTGTTCGTGTTGTGTTTTTGTCAGTGTTCTCAATCTTGTAGTGCAGAAAACAGCGGGTTGTTAAAATTCTGCTACACAATAGTGCTATAGTGCCACTTTACCCGCTATTTGACAACATTTTTTTTGCTAAATAGTGTACCATAAAACAATTTTTATACTAAAAAGCATATCGTGGAACAATAGTGATTTGTATAAATTCAGCTACCCTATAGCGATATGTGATCTACCCTCTGCTCGAAATATCTATCTAGCACTGGGAGAGATGCGTCCACACTTATAAAACAACAATCATATCTTAAACTATCAGCTTGACCCCACTTCTGCCCTGCCACAAGCAAGACCAACATTATTTAAAAGACAAGAAAAAAGACTGAACTGGCATTATCATGATGGGCTCAAACTTAAATATTTTCTAAAGTATCGACTCCAGGGGACATGACATTCCCATGTCTTCATTTTTATTCTCGTGATTAGAGTGAGTGTCCTCTTTCCACTTACATGAGAATGGAAGTTTTAATGTTACATTGTAACATATATTCATTTCCTAGCTTCTATTTAACCCATTGGTTTTGGTTACAAGGAATAACAAATATGTCTTAGTCTTTCATGGGGTTGCTGAAATTTGATAAATTGGAGTTTTGCACGCTTAATGCTTATTTAGAAAATGGTTGTTTTGAATGACAGATTGCTTCAGATGGACTCAAGCATAGAGTGTTTGAGGTTTCATTGGCTGATCTTCAAGGGGACGAAGACCATGCATTCAGGAAGATTAGGTTGAGAGCTGAAGATGTTCAAGGGAAAAATCTTTTGACAAATTTCTGGGTATGATAAGCTGCCGAACCATCTATTTGTCATAATGTTGTTTGTTGGTATTTTTTTTTTAATTTGATTTTGATTTTTTATTTTATTTACAGGGGATGAATTTCACAACTGACAAACTGAGGTCATTGGTGCGTAAGTGGCAAACTCTTGTTGAAGCCCATGTGGATGTCAAGACTACTGATAATTACACATTGAGGATGTTTTGCATTGGCTTTACCAAGAGGAGAGCTAACCAGGTGAAGAGGACCTGTTATGCACAATCTAGTCAGATTAGACAGGTAGATACATTGACGCTTTTCTTTTCAAATCATACTAGTTTTCTAGATTTATATATTAGTGTATCCAACACGGTATCCAACACATGTTTTAGGTAGGACCTTTCTTTTATGAAATGCTGTTATATATAAAGAAGAAATCACTGGTTTTGAACCTAGGATCATGCTTTGTCTTCTTCTAAGATATTTCTTATTAGTTACTAATGTTACACCTTTATTTGTTCAGATCCGTAGGAAGATGGTTGAGATCATGATCAACCAAGCATCATCCTGTGATTTGAAGGAATTGGTCCGCAAATTCATTCCCGAGATGATTGGGAAGGAGATTGAGAAAGCCACGTCTAGTATTTACCCCTTGCAGAATGTGTTCATCCGAAAAGTGAAGATCCTTAAAGCTCCCAAGTTTGATCTTGGAAAATTGATGGAGGTATTTTTTTGAAACAACTTTTTTATGTTTGTTCTCATTCACACCCAATATTTATTTTCATAATATCACCTGAATAAAAACTTTGGTTGTTACTTTGGTCACTGGTGTTATTTGCTTGACGAGATGAACTCTTTAATATAACCAATTACTTCAAACTTTCCAAAAGCTCTCTATTCGGTTTCTCCATAAACAACCTTCAGATTATTACAAGTTCAAAACTAAATACTTACTAATCCAATAAATGCTTGTGTGAAAACAAACTTAATCATGTTGCCTTTTAAAATTTTAATTTTGTTTTCCTTATGTTCTCTTTTAGCATGAGTATGCAGTTGTCACGTGTGCACACTTGTAACCATCTAAAAAGTGGCTTTGGTTTGATTTTGTTTCTATTTGGTCCTTGTAGGTTCATGGAGATTACTCTGAGGATGTTGGCACAAAGGTAGAGAGGCCTGCTGATGAAATGGTGACGGAGGAACCTACTGAAATTGTTGGAGCTTGA
Protein sequence

>MS.gene043821.t1

MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASDGLKHRVFEVSLADLQGDEDHAFRKIRLRAEDVQGKNLLTNFWGMNFTTDKLRSLVRKWQTLVEAHVDVKTTDNYTLRMFCIGFTKRRANQVKRTCYAQSSQIRQIRRKMVEIMINQASSCDLKELVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGTKVERPADEMVTEEPTEIVGA