AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene21834

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene21834.t1 MTR_5g006440 99.234 261 2 0 1 261 1 261 0.0 536
MS.gene21834.t1 MTR_1g103100 92.720 261 19 0 1 261 1 261 5.27e-175 482
MS.gene21834.t1 MTR_3g012040 90.805 261 24 0 1 261 1 261 5.33e-170 470
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene21834.t1 AT3G04840 85.496 262 37 1 1 261 1 262 2.00e-162 451
MS.gene21834.t1 AT4G34670 85.496 262 37 1 1 261 1 262 4.76e-162 450

Find 77 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAATCTCCTTACCAATTTC+TGG 0.102887 5.2:+1210854 MS.gene21834:CDS
CAACTTCCCAAGGTCAAATT+TGG 0.131525 5.2:-1211760 None:intergenic
GATCAAGCTCCAACAATTTC+TGG 0.179039 5.2:-1212142 None:intergenic
GGTCAAATTTGGGAGCTTTC+AGG 0.220044 5.2:-1211749 None:intergenic
GATATCATACCAATCCTTCT+TGG 0.266372 5.2:-1209716 None:intergenic
TTAGGTCATTGGTGCGAAAA+TGG 0.324689 5.2:+1210988 MS.gene21834:CDS
CCACTAACATACCCAGAAAT+TGG 0.324728 5.2:-1210866 None:intergenic
AACCTTGGTTTCTCGTACTC+AGG 0.324751 5.2:+1209777 MS.gene21834:CDS
GTTGAGAGCTGAAGATGTTC+AGG 0.329572 5.2:+1210828 MS.gene21834:CDS
CACCAAGAGGCGCTCTAATC+AGG 0.357358 5.2:+1211085 MS.gene21834:CDS
CCTGACGGATTTGACTTGAT+TGG 0.374179 5.2:-1211127 None:intergenic
GAGATGAGGACAACGCATTC+AGG 0.376338 5.2:+1210797 MS.gene21834:CDS
CTTTGAGAATGTTCTGCATT+GGG 0.377761 5.2:+1211060 MS.gene21834:CDS
CGCCGATCCATTTGCCAAGA+AGG 0.386423 5.2:+1209702 MS.gene21834:CDS
CACCGACAAGCTTAGGTCAT+TGG 0.388612 5.2:+1210977 MS.gene21834:CDS
ATTTGACCTTGGGAAGTTGA+TGG 0.390249 5.2:+1211764 MS.gene21834:CDS
CTGACGGATTTGACTTGATT+GGG 0.398861 5.2:-1211126 None:intergenic
TCAACCATTGTTTCATCTGC+AGG 0.407580 5.2:-1212112 None:intergenic
TACCAATCCTTCTTGGCAAA+TGG 0.412105 5.2:-1209709 None:intergenic
AACTTCCCAAGGTCAAATTT+GGG 0.419750 5.2:-1211759 None:intergenic
AAATCTCCTTACCAATTTCT+GGG 0.420398 5.2:+1210855 MS.gene21834:CDS
ATCAAGCTCCAACAATTTCT+GGG 0.427325 5.2:-1212141 None:intergenic
TTCTTCACTTGGAAGATTGA+AGG 0.435278 5.2:-1209745 None:intergenic
ACAACGCATTCAGGAAGATT+AGG 0.441352 5.2:+1210806 MS.gene21834:CDS
AAGTTTATCCCTGAGATGAT+TGG 0.442448 5.2:+1211657 MS.gene21834:CDS
CAGGGATAAACTTGCGTACC+AGG 0.444164 5.2:-1211647 None:intergenic
GTTTCATTGGCTGATCTTCA+AGG 0.448595 5.2:+1210775 MS.gene21834:CDS
AAGCTCCCAAATTTGACCTT+GGG 0.449450 5.2:+1211754 MS.gene21834:CDS
GAGGGAGATCATGATAAATC+AGG 0.461701 5.2:+1211602 MS.gene21834:CDS
AAAGCTCCCAAATTTGACCT+TGG 0.468887 5.2:+1211753 MS.gene21834:CDS
ACTTTGAGAATGTTCTGCAT+TGG 0.470669 5.2:+1211059 MS.gene21834:CDS
GAGAATCTCAAAGGGGAAGA+AGG 0.471651 5.2:+1209575 MS.gene21834:CDS
GGCGACCTCATGTGATTTGA+AGG 0.474863 5.2:+1211623 MS.gene21834:CDS
ATCCATTTGCCAAGAAGGAT+TGG 0.479936 5.2:+1209707 MS.gene21834:CDS
CACCAATGACCTAAGCTTGT+CGG 0.488210 5.2:-1210979 None:intergenic
GAAGGAACCCCAGAAATTGT+TGG 0.488913 5.2:+1212133 MS.gene21834:CDS
TCTTCACTTGGAAGATTGAA+GGG 0.492298 5.2:-1209744 None:intergenic
TCGTGTGTTTGAGGTTTCAT+TGG 0.502975 5.2:+1210762 MS.gene21834:CDS
ACTCAAACATCGTGTGTTTG+AGG 0.508854 5.2:+1210753 MS.gene21834:CDS
GCAGATGAAACAATGGTTGA+AGG 0.526419 5.2:+1212115 MS.gene21834:CDS
CCAATCAAGTCAAATCCGTC+AGG 0.535673 5.2:+1211127 MS.gene21834:CDS
GAAGAACGTTGGCAAAACCT+TGG 0.541738 5.2:+1209762 MS.gene21834:CDS
CTCTGAAGATGTTGGTACAA+AGG 0.543428 5.2:+1212081 MS.gene21834:CDS
GACCTGATTAGAGCGCCTCT+TGG 0.546399 5.2:-1211087 None:intergenic
TTGAGAGCTGAAGATGTTCA+GGG 0.547196 5.2:+1210829 MS.gene21834:CDS
ATCCTTCTTGGCAAATGGAT+CGG 0.549227 5.2:-1209704 None:intergenic
CTTCACTTGGAAGATTGAAG+GGG 0.561762 5.2:-1209743 None:intergenic
ACATATCAGATTGCTTCTGA+AGG 0.563525 5.2:+1210730 MS.gene21834:intron
TCAGATTCGTAGAAAGATGA+GGG 0.572813 5.2:+1211584 MS.gene21834:intron
AGAATCTCAAAGGGGAAGAA+GGG 0.576770 5.2:+1209576 MS.gene21834:CDS
ATCAGATTCGTAGAAAGATG+AGG 0.577414 5.2:+1211583 MS.gene21834:intron
ACCTTGGTTTCTCGTACTCA+GGG 0.577882 5.2:+1209778 MS.gene21834:CDS
GACTCTCATTGAAACTCATG+TGG 0.584413 5.2:+1211013 MS.gene21834:CDS
GGAGATTACTCTGAAGATGT+TGG 0.585493 5.2:+1212073 MS.gene21834:CDS
GATTGGAAAAGAGATTGAGA+AGG 0.590646 5.2:+1211674 MS.gene21834:CDS
ATCTTCCAAGTGAAGAACGT+TGG 0.592869 5.2:+1209751 MS.gene21834:CDS
AACATACCCAGAAATTGGTA+AGG 0.595805 5.2:-1210861 None:intergenic
ATTCTGCAGAGGGTAGATGC+TGG 0.596121 5.2:-1211703 None:intergenic
CTCATGTGATTTGAAGGACC+TGG 0.596391 5.2:+1211629 MS.gene21834:CDS
GGCTGATCTTCAAGGAGATG+AGG 0.598473 5.2:+1210783 MS.gene21834:CDS
CGAATGAAAACATTCTGCAG+AGG 0.608337 5.2:-1211714 None:intergenic
GGCGCTCTAATCAGGTCAAG+AGG 0.612045 5.2:+1211093 MS.gene21834:CDS
TGACCTTGGGAAGTTGATGG+AGG 0.615407 5.2:+1211767 MS.gene21834:CDS
GAATGAAAACATTCTGCAGA+GGG 0.617565 5.2:-1211713 None:intergenic
GAGAGCACAATCATGGCGGT+CGG 0.622737 5.2:+1209543 None:intergenic
ATCTCAAAGGGGAAGAAGGG+TGG 0.627186 5.2:+1209579 MS.gene21834:CDS
TTCTCGTACTCAGGGTACCA+AGG 0.636103 5.2:+1209786 MS.gene21834:CDS
TCAAGCTCCAACAATTTCTG+GGG 0.646345 5.2:-1212140 None:intergenic
ATACCTCCATCAACTTCCCA+AGG 0.647762 5.2:-1211770 None:intergenic
TCTGCATTGGGTTCACCAAG+AGG 0.648028 5.2:+1211072 MS.gene21834:CDS
TCTCAAAGTATAGTTATCAG+TGG 0.652644 5.2:-1211045 None:intergenic
CTGCAGAGGGTAGATGCTGG+AGG 0.656069 5.2:-1211700 None:intergenic
CAATGACCTAAGCTTGTCGG+TGG 0.676242 5.2:-1210976 None:intergenic
CAGGTCCTTCAAATCACATG+AGG 0.679807 5.2:-1211628 None:intergenic
ACCCTGAGTACGAGAAACCA+AGG 0.681818 5.2:-1209779 None:intergenic
ACGACCTGCAGATGAAACAA+TGG 0.737865 5.2:+1212108 MS.gene21834:CDS
AAAACAAGAGAATCTCAAAG+GGG 0.749921 5.2:+1209568 MS.gene21834:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTGTTGAAAAAAATTAA+TGG - chr5.2:1211928-1211947 None:intergenic 10.0%
!!! AATTTTTTAATATTTTAACC+AGG + chr5.2:1209875-1209894 MS.gene21834:intron 10.0%
!! AAATAGCTTAATTATATCTT+AGG - chr5.2:1211956-1211975 None:intergenic 15.0%
!! ATAATTATAAGGTAGAAAAT+AGG - chr5.2:1211207-1211226 None:intergenic 15.0%
!! ATTAGTGTTTAATATTGTTT+AGG + chr5.2:1210491-1210510 MS.gene21834:intron 15.0%
!!! AGTGTTAATTTATTAACTTT+TGG + chr5.2:1210638-1210657 MS.gene21834:intron 15.0%
!!! GATATAATTAAGCTATTTTT+CGG + chr5.2:1211958-1211977 MS.gene21834:intron 15.0%
!!! GTTAATTCATTGTTTATTTT+TGG + chr5.2:1212038-1212057 MS.gene21834:intron 15.0%
!! AATAGTAACTTTCATTCAAA+TGG - chr5.2:1211839-1211858 None:intergenic 20.0%
!! ACTGAAAAATGACAATAATA+TGG - chr5.2:1212006-1212025 None:intergenic 20.0%
!! ATAGTAACTTTCATTCAAAT+GGG - chr5.2:1211838-1211857 None:intergenic 20.0%
!! ATTTATGAGTAAAACAACAA+GGG - chr5.2:1211439-1211458 None:intergenic 20.0%
!! CTGAAAAATGACAATAATAT+GGG - chr5.2:1212005-1212024 None:intergenic 20.0%
!! GAAAGAGATATACAATTATA+AGG - chr5.2:1211326-1211345 None:intergenic 20.0%
!! TATAACTCTTTGACATTAAT+TGG + chr5.2:1210226-1210245 MS.gene21834:intron 20.0%
!! TATAGCTAATTAATAGCATA+TGG + chr5.2:1211295-1211314 MS.gene21834:intron 20.0%
!! TATTTATGAGTAAAACAACA+AGG - chr5.2:1211440-1211459 None:intergenic 20.0%
!! TTAATTTCTTCTATCTTATC+TGG + chr5.2:1210092-1210111 MS.gene21834:intron 20.0%
!!! TATTTTTCGGTCATAAAAAA+TGG + chr5.2:1211971-1211990 MS.gene21834:intron 20.0%
! AAAAACAAGAGAATCTCAAA+GGG + chr5.2:1209567-1209586 MS.gene21834:CDS 25.0%
! AGCTGGTACAAATAATTATA+AGG - chr5.2:1211218-1211237 None:intergenic 25.0%
! CAATGTCAATCAAATCAAAT+TGG - chr5.2:1210680-1210699 None:intergenic 25.0%
! TACGAATCTGATAAAGATAA+AGG - chr5.2:1211575-1211594 None:intergenic 25.0%
! TCGTTTAAATTTGTGAGATT+TGG + chr5.2:1209900-1209919 MS.gene21834:intron 25.0%
! TGAATACAAAGATTACTGAT+AGG - chr5.2:1210199-1210218 None:intergenic 25.0%
! TGACTAACATTCTAATGTAA+AGG - chr5.2:1211873-1211892 None:intergenic 25.0%
! TGTTATTGTGATGAATTGTT+TGG + chr5.2:1209992-1210011 MS.gene21834:intron 25.0%
!! AATTTCTTGTTTAATGCTTC+TGG + chr5.2:1209845-1209864 MS.gene21834:intron 25.0%
!! ATTTCTTGTTTAATGCTTCT+GGG + chr5.2:1209846-1209865 MS.gene21834:intron 25.0%
!!! CTATGTATGTTTTTTCTACA+GGG + chr5.2:1210942-1210961 MS.gene21834:intron 25.0%
!!! TCTAATCTCTGTTTTTTCTT+AGG + chr5.2:1211505-1211524 MS.gene21834:intron 25.0%
!!! TCTATGTATGTTTTTTCTAC+AGG + chr5.2:1210941-1210960 MS.gene21834:intron 25.0%
AAAACAAGAGAATCTCAAAG+GGG + chr5.2:1209568-1209587 MS.gene21834:CDS 30.0%
AAAAGCAATGAGAGTGAAAA+GGG - chr5.2:1209633-1209652 None:intergenic 30.0%
AAAATCTCCTTACCAATTTC+TGG + chr5.2:1210854-1210873 MS.gene21834:CDS 30.0%
AAACTAAACTTTATCCCACT+CGG + chr5.2:1210276-1210295 MS.gene21834:intron 30.0%
AAAGAAAAGTGACAGCAAAA+TGG + chr5.2:1210357-1210376 MS.gene21834:intron 30.0%
AAATCTCCTTACCAATTTCT+GGG + chr5.2:1210855-1210874 MS.gene21834:CDS 30.0%
AATTATTTGTACCAGCTTGT+AGG + chr5.2:1211221-1211240 MS.gene21834:intron 30.0%
ACATACTTGACATTATGCAT+TGG + chr5.2:1211481-1211500 MS.gene21834:intron 30.0%
ATTGTAGTGAAAATACCTGA+CGG - chr5.2:1211145-1211164 None:intergenic 30.0%
CAAAAACAAGAGAATCTCAA+AGG + chr5.2:1209566-1209585 MS.gene21834:CDS 30.0%
CACACATTTCTTCAAAACTT+TGG + chr5.2:1210122-1210141 MS.gene21834:intron 30.0%
GTCAAGTATGTATCAAAACA+AGG - chr5.2:1211472-1211491 None:intergenic 30.0%
TAACCAAAACAGCTCAATAT+GGG - chr5.2:1211897-1211916 None:intergenic 30.0%
TATGTATCAAAACAAGGAGT+AGG - chr5.2:1211466-1211485 None:intergenic 30.0%
TCTCAAAGTATAGTTATCAG+TGG - chr5.2:1211048-1211067 None:intergenic 30.0%
TTAACCAAAACAGCTCAATA+TGG - chr5.2:1211898-1211917 None:intergenic 30.0%
TTTCACTACAATATTGCTAG+TGG + chr5.2:1211153-1211172 MS.gene21834:intron 30.0%
! TTGAGTGAATTTGTTCTTAC+TGG + chr5.2:1210544-1210563 MS.gene21834:intron 30.0%
!!! CATTGTTTATTTTTGGTCGT+AGG + chr5.2:1212045-1212064 MS.gene21834:intron 30.0%
!!! CTCTGTTTTTTCTTAGGAAA+TGG + chr5.2:1211511-1211530 MS.gene21834:intron 30.0%
!!! TATGTTTTTTCTACAGGGAA+TGG + chr5.2:1210947-1210966 MS.gene21834:intron 30.0%
AACATACCCAGAAATTGGTA+AGG - chr5.2:1210864-1210883 None:intergenic 35.0%
AACTTCCCAAGGTCAAATTT+GGG - chr5.2:1211762-1211781 None:intergenic 35.0%
AAGTTTATCCCTGAGATGAT+TGG + chr5.2:1211657-1211676 MS.gene21834:CDS 35.0%
ACATATCAGATTGCTTCTGA+AGG + chr5.2:1210730-1210749 MS.gene21834:intron 35.0%
AGCTTATTCTCATTCCATCT+AGG - chr5.2:1210458-1210477 None:intergenic 35.0%
ATCAGATTCGTAGAAAGATG+AGG + chr5.2:1211583-1211602 MS.gene21834:intron 35.0%
ATCATACCCATTGGCATTAT+GGG - chr5.2:1210055-1210074 None:intergenic 35.0%
CCACAAAATATCATACCCAT+TGG - chr5.2:1210064-1210083 None:intergenic 35.0%
GAAAAGCAATGAGAGTGAAA+AGG - chr5.2:1209634-1209653 None:intergenic 35.0%
GAATGAAAACATTCTGCAGA+GGG - chr5.2:1211716-1211735 None:intergenic 35.0%
GATATCATACCAATCCTTCT+TGG - chr5.2:1209719-1209738 None:intergenic 35.0%
GATTGGAAAAGAGATTGAGA+AGG + chr5.2:1211674-1211693 MS.gene21834:CDS 35.0%
TATCATACCCATTGGCATTA+TGG - chr5.2:1210056-1210075 None:intergenic 35.0%
TATGAGTAAAACAACAAGGG+TGG - chr5.2:1211436-1211455 None:intergenic 35.0%
TATGCTTCATTGAACCTAGA+TGG + chr5.2:1210441-1210460 MS.gene21834:intron 35.0%
TCACAAATTTAAACGAAGCC+TGG - chr5.2:1209896-1209915 None:intergenic 35.0%
TCAGATTCGTAGAAAGATGA+GGG + chr5.2:1211584-1211603 MS.gene21834:intron 35.0%
TCTTCACTTGGAAGATTGAA+GGG - chr5.2:1209747-1209766 None:intergenic 35.0%
TTCAAATGGGAACAAACTAG+TGG - chr5.2:1211825-1211844 None:intergenic 35.0%
TTCTTCACTTGGAAGATTGA+AGG - chr5.2:1209748-1209767 None:intergenic 35.0%
! ACTTTGAGAATGTTCTGCAT+TGG + chr5.2:1211059-1211078 MS.gene21834:CDS 35.0%
! ATCTCTTTTCCAATCATCTC+AGG - chr5.2:1211669-1211688 None:intergenic 35.0%
! ATGAACGAAAAAGTGTACCT+TGG - chr5.2:1209806-1209825 None:intergenic 35.0%
! CCAATGGGTATGATATTTTG+TGG + chr5.2:1210061-1210080 MS.gene21834:intron 35.0%
! CTTTGAGAATGTTCTGCATT+GGG + chr5.2:1211060-1211079 MS.gene21834:CDS 35.0%
! TCTCTTTTCCAATCATCTCA+GGG - chr5.2:1211668-1211687 None:intergenic 35.0%
!!! TATTTTTGGTCGTAGGTTCA+TGG + chr5.2:1212052-1212071 MS.gene21834:intron 35.0%
AAAGCTCCCAAATTTGACCT+TGG + chr5.2:1211753-1211772 MS.gene21834:CDS 40.0%
AAGCTCCCAAATTTGACCTT+GGG + chr5.2:1211754-1211773 MS.gene21834:CDS 40.0%
ACAACGCATTCAGGAAGATT+AGG + chr5.2:1210806-1210825 MS.gene21834:CDS 40.0%
ACACATAGATACCACACAGT+AGG - chr5.2:1209948-1209967 None:intergenic 40.0%
ACTCAAACATCGTGTGTTTG+AGG + chr5.2:1210753-1210772 MS.gene21834:CDS 40.0%
AGAATCTCAAAGGGGAAGAA+GGG + chr5.2:1209576-1209595 MS.gene21834:CDS 40.0%
ATCCATTTGCCAAGAAGGAT+TGG + chr5.2:1209707-1209726 MS.gene21834:CDS 40.0%
ATCCTTCTTGGCAAATGGAT+CGG - chr5.2:1209707-1209726 None:intergenic 40.0%
ATCTTCCAAGTGAAGAACGT+TGG + chr5.2:1209751-1209770 MS.gene21834:CDS 40.0%
ATTTGACCTTGGGAAGTTGA+TGG + chr5.2:1211764-1211783 MS.gene21834:CDS 40.0%
CAACTTCCCAAGGTCAAATT+TGG - chr5.2:1211763-1211782 None:intergenic 40.0%
CCAATTAACATCCTACAAGC+TGG - chr5.2:1211235-1211254 None:intergenic 40.0%
CCACTAACATACCCAGAAAT+TGG - chr5.2:1210869-1210888 None:intergenic 40.0%
CCAGCTTGTAGGATGTTAAT+TGG + chr5.2:1211232-1211251 MS.gene21834:intron 40.0%
CGAATGAAAACATTCTGCAG+AGG - chr5.2:1211717-1211736 None:intergenic 40.0%
CTTCACTTGGAAGATTGAAG+GGG - chr5.2:1209746-1209765 None:intergenic 40.0%
GACTCTCATTGAAACTCATG+TGG + chr5.2:1211013-1211032 MS.gene21834:CDS 40.0%
GAGGGAGATCATGATAAATC+AGG + chr5.2:1211602-1211621 MS.gene21834:CDS 40.0%
GCAGATGAAACAATGGTTGA+AGG + chr5.2:1212115-1212134 MS.gene21834:CDS 40.0%
TAAACTTTATCCCACTCGGT+GGG + chr5.2:1210280-1210299 MS.gene21834:intron 40.0%
TACCAATCCTTCTTGGCAAA+TGG - chr5.2:1209712-1209731 None:intergenic 40.0%
TCAACCATTGTTTCATCTGC+AGG - chr5.2:1212115-1212134 None:intergenic 40.0%
TCAAGCTCCAACAATTTCTG+GGG - chr5.2:1212143-1212162 None:intergenic 40.0%
TGTGTGGTATCTATGTGTTG+TGG + chr5.2:1209950-1209969 MS.gene21834:intron 40.0%
TTAGGTCATTGGTGCGAAAA+TGG + chr5.2:1210988-1211007 MS.gene21834:CDS 40.0%
TTGAGAGCTGAAGATGTTCA+GGG + chr5.2:1210829-1210848 MS.gene21834:CDS 40.0%
! AGTGGTTTCAAGTCTAGTAG+TGG - chr5.2:1211807-1211826 None:intergenic 40.0%
! ATTTTACCACCGACAAGCTT+AGG + chr5.2:1210970-1210989 MS.gene21834:CDS 40.0%
! CAACCCATATTGAGCTGTTT+TGG + chr5.2:1211891-1211910 MS.gene21834:intron 40.0%
! CCAATTTCTGGGTATGTTAG+TGG + chr5.2:1210866-1210885 MS.gene21834:intron 40.0%
! CTCTGAAGATGTTGGTACAA+AGG + chr5.2:1212081-1212100 MS.gene21834:CDS 40.0%
! GGAGATTACTCTGAAGATGT+TGG + chr5.2:1212073-1212092 MS.gene21834:CDS 40.0%
! GTTTCATTGGCTGATCTTCA+AGG + chr5.2:1210775-1210794 MS.gene21834:CDS 40.0%
! TCGTGTGTTTGAGGTTTCAT+TGG + chr5.2:1210762-1210781 MS.gene21834:CDS 40.0%
! TTTTGCCAACGTTCTTCACT+TGG - chr5.2:1209759-1209778 None:intergenic 40.0%
!! CTGACGGATTTGACTTGATT+GGG - chr5.2:1211129-1211148 None:intergenic 40.0%
AACCTTGGTTTCTCGTACTC+AGG + chr5.2:1209777-1209796 MS.gene21834:CDS 45.0%
ACCTTGGTTTCTCGTACTCA+GGG + chr5.2:1209778-1209797 MS.gene21834:CDS 45.0%
ACGACCTGCAGATGAAACAA+TGG + chr5.2:1212108-1212127 MS.gene21834:CDS 45.0%
ACTGATCTCTTCCTACTGTG+TGG + chr5.2:1209934-1209953 MS.gene21834:intron 45.0%
ACTGTGTCCCATAATGCCAA+TGG + chr5.2:1210045-1210064 MS.gene21834:intron 45.0%
ATACCTCCATCAACTTCCCA+AGG - chr5.2:1211773-1211792 None:intergenic 45.0%
CACCAATGACCTAAGCTTGT+CGG - chr5.2:1210982-1211001 None:intergenic 45.0%
CAGGTCCTTCAAATCACATG+AGG - chr5.2:1211631-1211650 None:intergenic 45.0%
CCAATCAAGTCAAATCCGTC+AGG + chr5.2:1211127-1211146 MS.gene21834:CDS 45.0%
CTAAACTTTATCCCACTCGG+TGG + chr5.2:1210279-1210298 MS.gene21834:intron 45.0%
CTCATGTGATTTGAAGGACC+TGG + chr5.2:1211629-1211648 MS.gene21834:CDS 45.0%
CTGTGTCCCATAATGCCAAT+GGG + chr5.2:1210046-1210065 MS.gene21834:intron 45.0%
GAAGAACGTTGGCAAAACCT+TGG + chr5.2:1209762-1209781 MS.gene21834:CDS 45.0%
GAAGGAACCCCAGAAATTGT+TGG + chr5.2:1212133-1212152 MS.gene21834:CDS 45.0%
GAGAATCTCAAAGGGGAAGA+AGG + chr5.2:1209575-1209594 MS.gene21834:CDS 45.0%
GGTCAAATTTGGGAGCTTTC+AGG - chr5.2:1211752-1211771 None:intergenic 45.0%
GTTGAGAGCTGAAGATGTTC+AGG + chr5.2:1210828-1210847 MS.gene21834:CDS 45.0%
! AAACTTTATCCCACTCGGTG+GGG + chr5.2:1210281-1210300 MS.gene21834:intron 45.0%
! ATTTGTTAACCCCACCGAGT+GGG - chr5.2:1210293-1210312 None:intergenic 45.0%
!! CCTGACGGATTTGACTTGAT+TGG - chr5.2:1211130-1211149 None:intergenic 45.0%
ACCCTGAGTACGAGAAACCA+AGG - chr5.2:1209782-1209801 None:intergenic 50.0%
ATCTCAAAGGGGAAGAAGGG+TGG + chr5.2:1209579-1209598 MS.gene21834:CDS 50.0%
ATTCTGCAGAGGGTAGATGC+TGG - chr5.2:1211706-1211725 None:intergenic 50.0%
CAATGACCTAAGCTTGTCGG+TGG - chr5.2:1210979-1210998 None:intergenic 50.0%
CACCGACAAGCTTAGGTCAT+TGG + chr5.2:1210977-1210996 MS.gene21834:CDS 50.0%
CAGGGATAAACTTGCGTACC+AGG - chr5.2:1211650-1211669 None:intergenic 50.0%
GAGATGAGGACAACGCATTC+AGG + chr5.2:1210797-1210816 MS.gene21834:CDS 50.0%
GGCGACCTCATGTGATTTGA+AGG + chr5.2:1211623-1211642 MS.gene21834:CDS 50.0%
GGCTGATCTTCAAGGAGATG+AGG + chr5.2:1210783-1210802 MS.gene21834:CDS 50.0%
TCTGCATTGGGTTCACCAAG+AGG + chr5.2:1211072-1211091 MS.gene21834:CDS 50.0%
! TTCTCGTACTCAGGGTACCA+AGG + chr5.2:1209786-1209805 MS.gene21834:CDS 50.0%
!! GATTTGTTAACCCCACCGAG+TGG - chr5.2:1210294-1210313 None:intergenic 50.0%
!! TGACCTTGGGAAGTTGATGG+AGG + chr5.2:1211767-1211786 MS.gene21834:CDS 50.0%
CGCCGATCCATTTGCCAAGA+AGG + chr5.2:1209702-1209721 MS.gene21834:CDS 55.0%
GGCGCTCTAATCAGGTCAAG+AGG + chr5.2:1211093-1211112 MS.gene21834:CDS 55.0%
! GACCTGATTAGAGCGCCTCT+TGG - chr5.2:1211090-1211109 None:intergenic 55.0%
!! CACCAAGAGGCGCTCTAATC+AGG + chr5.2:1211085-1211104 MS.gene21834:CDS 55.0%
CTGCAGAGGGTAGATGCTGG+AGG - chr5.2:1211703-1211722 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 1209555 1212162 1209555 ID=MS.gene21834
chr5.2 mRNA 1209555 1212162 1209555 ID=MS.gene21834.t1;Parent=MS.gene21834
chr5.2 exon 1209555 1209613 1209555 ID=MS.gene21834.t1.exon1;Parent=MS.gene21834.t1
chr5.2 CDS 1209555 1209613 1209555 ID=cds.MS.gene21834.t1;Parent=MS.gene21834.t1
chr5.2 exon 1209702 1209807 1209702 ID=MS.gene21834.t1.exon2;Parent=MS.gene21834.t1
chr5.2 CDS 1209702 1209807 1209702 ID=cds.MS.gene21834.t1;Parent=MS.gene21834.t1
chr5.2 exon 1210739 1210876 1210739 ID=MS.gene21834.t1.exon3;Parent=MS.gene21834.t1
chr5.2 CDS 1210739 1210876 1210739 ID=cds.MS.gene21834.t1;Parent=MS.gene21834.t1
chr5.2 exon 1210963 1211148 1210963 ID=MS.gene21834.t1.exon4;Parent=MS.gene21834.t1
chr5.2 CDS 1210963 1211148 1210963 ID=cds.MS.gene21834.t1;Parent=MS.gene21834.t1
chr5.2 exon 1211588 1211788 1211588 ID=MS.gene21834.t1.exon5;Parent=MS.gene21834.t1
chr5.2 CDS 1211588 1211788 1211588 ID=cds.MS.gene21834.t1;Parent=MS.gene21834.t1
chr5.2 exon 1212067 1212162 1212067 ID=MS.gene21834.t1.exon6;Parent=MS.gene21834.t1
chr5.2 CDS 1212067 1212162 1212067 ID=cds.MS.gene21834.t1;Parent=MS.gene21834.t1
Gene Sequence

>MS.gene21834

ATGGCGGTCGGCAAAAACAAGAGAATCTCAAAGGGGAAGAAGGGTGGCAAGAAGAAAGCGTAAGCTTCATTCATTCCCTTTTCACTCTCATTGCTTTTCATTTTTGTTATTTAGCTCAGATTTTTTGATTCAATTATCAATTTACAGCGCCGATCCATTTGCCAAGAAGGATTGGTATGATATCAAAGCCCCTTCAATCTTCCAAGTGAAGAACGTTGGCAAAACCTTGGTTTCTCGTACTCAGGGTACCAAGGTACACTTTTTCGTTCATATTCTGTATCAAAATTTATAATTTCTTGTTTAATGCTTCTGGGTCATGTAATTTTTTAATATTTTAACCAGGCTTCGTTTAAATTTGTGAGATTTGGTTATTTTGTTTACTGATCTCTTCCTACTGTGTGGTATCTATGTGTTGTGGAATTTAGATTGCTCTTAATTGTTATTGTGATGAATTGTTTGGTAATATAGTTTATAGAACTAATGCTGTTATACTGTGTCCCATAATGCCAATGGGTATGATATTTTGTGGTTTTTAATTTAATTTCTTCTATCTTATCTGGAGAACATCACACATTTCTTCAAAACTTTGGTTCTTTTGATTTCAACAAGTGTCAATTCTTACTGTTAGATTTAAATTATGACCTATCAGTAATCTTTGTATTCATTAAGACTATAACTCTTTGACATTAATTGGAAAAAAAACAATAGAAAACAGCAGCAGAAACTAAACTTTATCCCACTCGGTGGGGTTAACAAATCTACACAAGATAATATCTTCTTTTAATAAAGATGATTTCATATGAAAGAAAAGTGACAGCAAAATGGAGACTGAGATTGAAAAAACTTGAACACTAGCAATGAATATAGTTTATAAAATGAATGCTTATATGCTTCATTGAACCTAGATGGAATGAGAATAAGCTTAGATCATGATTAATTAGTGTTTAATATTGTTTAGGAGTTTTATATTATTTTTTAAAGTTATAGTTTTGAGTGAATTTGTTCTTACTGGCAATTTAATTTTTTGACTTGATTTTCTAGTTCATGATTAATTAGTGTTTAATATTGTTTAGGAGTCTTAACAGTGTTAATTTATTAACTTTTGGTGTATTTGTTGTATGTCCAATTTGATTTGATTGACATTGTTATCTTAATGATGATTCTATGTTGTTTTTACATATCAGATTGCTTCTGAAGGACTCAAACATCGTGTGTTTGAGGTTTCATTGGCTGATCTTCAAGGAGATGAGGACAACGCATTCAGGAAGATTAGGTTGAGAGCTGAAGATGTTCAGGGAAAAAATCTCCTTACCAATTTCTGGGTATGTTAGTGGCTGTGTATTTTTTGATTTTGTTTTATTGTTGCATGAATAGTGTATGATGTATTCTATGTATGTTTTTTCTACAGGGAATGGATTTTACCACCGACAAGCTTAGGTCATTGGTGCGAAAATGGCAGACTCTCATTGAAACTCATGTGGATGTTAAGACCACTGATAACTATACTTTGAGAATGTTCTGCATTGGGTTCACCAAGAGGCGCTCTAATCAGGTCAAGAGGACTTGTTACGCCCAATCAAGTCAAATCCGTCAGGTATTTTCACTACAATATTGCTAGTGGTTTCATTTGAACTCTGCTTTGTCTTCAACCTATTTTCTACCTTATAATTATTTGTACCAGCTTGTAGGATGTTAATTGGTGTACACTGTAATTGCATATCTCTTTTAGTCAAGCACTTATATAGCTAATTAATAGCATATGGTGTGACCTTATAATTGTATATCTCTTTCAATCAAGCACATATAACTAATTTATAGTGTATGTAGTAAATTAAGTTATATCTTTACTAGTTAATTTTTCTCTTTGATTTTGCATATCCACCCTTGTTGTTTTACTCATAAATATCTCCTACTCCTTGTTTTGATACATACTTGACATTATGCATTGGTTCTAATCTCTGTTTTTTCTTAGGAAATGGTTTGTTATGTCAGATAGCATAAAAAGTTTATATGTTTTCCTTTATCTTTATCAGATTCGTAGAAAGATGAGGGAGATCATGATAAATCAGGCGACCTCATGTGATTTGAAGGACCTGGTACGCAAGTTTATCCCTGAGATGATTGGAAAAGAGATTGAGAAGGCTACCTCCAGCATCTACCCTCTGCAGAATGTTTTCATTCGTAAAGTTAAGATCCTGAAAGCTCCCAAATTTGACCTTGGGAAGTTGATGGAGGTATGTCTTTTATGTCCACTACTAGACTTGAAACCACTAGTTTGTTCCCATTTGAATGAAAGTTACTATTATTTAATGATTCCTTTACATTAGAATGTTAGTCAACCCATATTGAGCTGTTTTGGTTAAAGATTTTCCATTAATTTTTTTCAACAAATTATGATCCTAAGATATAATTAAGCTATTTTTCGGTCATAAAAAATGGTTGAATGACCCATATTATTGTCATTTTTCAGTTTTCGTCAGTTTGTTAATTCATTGTTTATTTTTGGTCGTAGGTTCATGGAGATTACTCTGAAGATGTTGGTACAAAGGTTGAACGACCTGCAGATGAAACAATGGTTGAAGGAACCCCAGAAATTGTTGGAGCTTGA
Protein sequence

>MS.gene21834.t1

MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSIFQVKNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQGDEDNAFRKIRLRAEDVQGKNLLTNFWGMDFTTDKLRSLVRKWQTLIETHVDVKTTDNYTLRMFCIGFTKRRSNQVKRTCYAQSSQIRQIRRKMREIMINQATSCDLKDLVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGTKVERPADETMVEGTPEIVGA