Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070946.t1 | XP_013469779.1 | 93.1 | 261 | 3 | 1 | 1 | 246 | 1 | 261 | 9.30E-129 | 469.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070946.t1 | Q8GTE3 | 86.6 | 261 | 20 | 1 | 1 | 246 | 1 | 261 | 2.1e-121 | 436.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070946.t1 | B7FLW8 | 93.1 | 261 | 3 | 1 | 1 | 246 | 1 | 261 | 6.7e-129 | 469.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050134 | MS.gene070946 | 0.877456 | 6.19E-69 | -1.69E-46 |
| MS.gene050791 | MS.gene070946 | 0.889737 | 1.85E-73 | -1.69E-46 |
| MS.gene050912 | MS.gene070946 | 0.835623 | 1.51E-56 | -1.69E-46 |
| MS.gene051984 | MS.gene070946 | 0.841154 | 5.64E-58 | -1.69E-46 |
| MS.gene052664 | MS.gene070946 | 0.825584 | 4.33E-54 | -1.69E-46 |
| MS.gene053224 | MS.gene070946 | 0.867375 | 1.43E-65 | -1.69E-46 |
| MS.gene054624 | MS.gene070946 | 0.813881 | 2.04E-51 | -1.69E-46 |
| MS.gene054662 | MS.gene070946 | 0.827757 | 1.31E-54 | -1.69E-46 |
| MS.gene057165 | MS.gene070946 | 0.882302 | 1.17E-70 | -1.69E-46 |
| MS.gene057272 | MS.gene070946 | 0.888221 | 7.16E-73 | -1.69E-46 |
| MS.gene06093 | MS.gene070946 | 0.801943 | 7.09E-49 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070946.t1 | MTR_1g103100 | 93.103 | 261 | 3 | 1 | 1 | 246 | 1 | 261 | 7.33e-180 | 494 |
| MS.gene070946.t1 | MTR_3g012040 | 91.188 | 261 | 8 | 1 | 1 | 246 | 1 | 261 | 7.57e-167 | 461 |
| MS.gene070946.t1 | MTR_5g006440 | 88.889 | 261 | 14 | 1 | 1 | 246 | 1 | 261 | 8.56e-162 | 448 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070946.t1 | AT3G04840 | 80.153 | 262 | 36 | 2 | 1 | 246 | 1 | 262 | 1.23e-148 | 415 |
| MS.gene070946.t1 | AT4G34670 | 80.153 | 262 | 36 | 2 | 1 | 246 | 1 | 262 | 2.13e-147 | 412 |
Find 72 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCAAACTTGGGAGCTTTA+AGG | 0.168578 | 1.4:-79758852 | None:intergenic |
| GATATCATACCAATCCTTCT+TGG | 0.295389 | 1.4:-79757128 | None:intergenic |
| ATTTGGTCCTTGTAGGTTCA+TGG | 0.319619 | 1.4:+79759292 | MS.gene070946:intron |
| AAAGCTCCCAAGTTTGATCT+TGG | 0.357514 | 1.4:+79758856 | MS.gene070946:CDS |
| TAAGAACAAGCGGATCTCTA+AGG | 0.365175 | 1.4:+79756986 | MS.gene070946:CDS |
| GTTTGATCTTGGAAAATTGA+TGG | 0.369245 | 1.4:+79758867 | MS.gene070946:CDS |
| AAATTCATTCCCGAGATGAT+TGG | 0.381702 | 1.4:+79758760 | MS.gene070946:CDS |
| GGGACGAAGAACATGCATTC+AGG | 0.393353 | 1.4:+79758100 | MS.gene070946:CDS |
| GACCCTCGTGTCTCGTACTC+AGG | 0.406163 | 1.4:+79757189 | MS.gene070946:CDS |
| TACCAATCCTTCTTGGCAAA+TGG | 0.412105 | 1.4:-79757121 | None:intergenic |
| TAGAGTGTTTGAGGTTTCAT+TGG | 0.413434 | 1.4:+79758065 | MS.gene070946:CDS |
| AATTCATTCCCGAGATGATT+GGG | 0.425172 | 1.4:+79758761 | MS.gene070946:CDS |
| GTTTCATTGGCTGATCTTCA+AGG | 0.434675 | 1.4:+79758078 | MS.gene070946:CDS |
| AGCATCATCTTGTGATTTGA+AGG | 0.436321 | 1.4:+79758726 | MS.gene070946:CDS |
| TGCTGATCCATTTGCCAAGA+AGG | 0.436339 | 1.4:+79757114 | MS.gene070946:CDS |
| TCCGTCACCATTTCATCAGC+AGG | 0.444686 | 1.4:-79759352 | None:intergenic |
| ACTCAAGCATAGAGTGTTTG+AGG | 0.454600 | 1.4:+79758056 | MS.gene070946:CDS |
| TACCAAGAGGAGAGCTAACC+AGG | 0.455144 | 1.4:+79758405 | MS.gene070946:CDS |
| ATCTTGTGATTTGAAGGGAT+TGG | 0.459981 | 1.4:+79758732 | MS.gene070946:CDS |
| AACATGCATTCAGGAAGATT+AGG | 0.462005 | 1.4:+79758109 | MS.gene070946:CDS |
| ATCCATTTGCCAAGAAGGAT+TGG | 0.465718 | 1.4:+79757119 | MS.gene070946:CDS |
| ATCTCTTTCCCAATCATCTC+GGG | 0.472425 | 1.4:-79758769 | None:intergenic |
| CTGACTAGATTGTGCATAGC+AGG | 0.478379 | 1.4:-79758437 | None:intergenic |
| GAGGAACCTACTGAAATTGT+TGG | 0.484047 | 1.4:+79759373 | MS.gene070946:CDS |
| GAAGGATTGGTATGATATCA+AGG | 0.488212 | 1.4:+79757132 | MS.gene070946:CDS |
| GTCTCGTACTCAGGGTACTA+AGG | 0.497238 | 1.4:+79757198 | MS.gene070946:CDS |
| TGGTCAGATCCGTAGGAAGA+TGG | 0.499805 | 1.4:+79758684 | MS.gene070946:intron |
| CACCTGGTTAGCTCTCCTCT+TGG | 0.502596 | 1.4:-79758407 | None:intergenic |
| TCAAATCACAAGATGATGCT+TGG | 0.512552 | 1.4:-79758723 | None:intergenic |
| CGGATCTCTAAGGGGAAGAA+AGG | 0.516719 | 1.4:+79756996 | MS.gene070946:CDS |
| TCATCTCGGGAATGAATTTG+AGG | 0.518795 | 1.4:-79758756 | None:intergenic |
| CATAGCAGGTCCTCTTCACC+TGG | 0.518854 | 1.4:-79758423 | None:intergenic |
| GGATGAACACATTCTGCAAA+GGG | 0.521000 | 1.4:-79758816 | None:intergenic |
| AAGAACAAGCGGATCTCTAA+GGG | 0.521243 | 1.4:+79756987 | MS.gene070946:CDS |
| CTTGTTCTTACCAACGGCCA+TGG | 0.523346 | 1.4:-79756973 | None:intergenic |
| TTTCATTGGCTGATCTTCAA+GGG | 0.523908 | 1.4:+79758079 | MS.gene070946:CDS |
| AGAGAGGCCTGCTGATGAAA+TGG | 0.532099 | 1.4:+79759345 | MS.gene070946:CDS |
| TCTTGCCGACATTCTTCACC+TGG | 0.534041 | 1.4:-79757168 | None:intergenic |
| CTTTATTTGGTCAGATCCGT+AGG | 0.534876 | 1.4:+79758677 | MS.gene070946:intron |
| TTGAGAGCTGAAGATGTTCA+AGG | 0.537527 | 1.4:+79758132 | MS.gene070946:CDS |
| CGGATGAACACATTCTGCAA+AGG | 0.540177 | 1.4:-79758817 | None:intergenic |
| GCATCATCTTGTGATTTGAA+GGG | 0.543515 | 1.4:+79758727 | MS.gene070946:CDS |
| GATCTCTTTCCCAATCATCT+CGG | 0.545949 | 1.4:-79758770 | None:intergenic |
| GGAGAGCTAACCAGGTGAAG+AGG | 0.557404 | 1.4:+79758413 | MS.gene070946:CDS |
| GAATGACAGATTGCTTCAGA+TGG | 0.560187 | 1.4:+79758033 | MS.gene070946:intron |
| CTCTGAGGATGTTGGCACAA+AGG | 0.562498 | 1.4:+79759321 | MS.gene070946:CDS |
| GATCCGCTTGTTCTTACCAA+CGG | 0.569816 | 1.4:-79756979 | None:intergenic |
| ACAATCTAGTCAGATTAGAC+AGG | 0.580594 | 1.4:+79758447 | MS.gene070946:CDS |
| GGAGATTACTCTGAGGATGT+TGG | 0.587473 | 1.4:+79759313 | MS.gene070946:CDS |
| TTCTTCACCTGGAAAACTGA+AGG | 0.588083 | 1.4:-79757157 | None:intergenic |
| TGATCTCAACCATCTTCCTA+CGG | 0.590794 | 1.4:-79758693 | None:intergenic |
| TTCATTGGCTGATCTTCAAG+GGG | 0.595752 | 1.4:+79758080 | MS.gene070946:CDS |
| CAGTAGTCTTGACATCCACA+TGG | 0.596992 | 1.4:-79758348 | None:intergenic |
| CAAGCTCCAACAATTTCAGT+AGG | 0.597980 | 1.4:-79759379 | None:intergenic |
| AACAGTGAAACCATGGCCGT+TGG | 0.599680 | 1.4:+79756963 | None:intergenic |
| AACTCTTATTGAAGCCCATG+TGG | 0.605950 | 1.4:+79758333 | MS.gene070946:CDS |
| TGATCTTGGAAAATTGATGG+AGG | 0.612140 | 1.4:+79758870 | MS.gene070946:CDS |
| TGAGAGCTGAAGATGTTCAA+GGG | 0.612312 | 1.4:+79758133 | MS.gene070946:CDS |
| ACCCTCGTGTCTCGTACTCA+GGG | 0.615233 | 1.4:+79757190 | MS.gene070946:CDS |
| ATCTCTAAGGGGAAGAAAGG+TGG | 0.621403 | 1.4:+79756999 | MS.gene070946:CDS |
| TGGCCGTTGGTAAGAACAAG+CGG | 0.624911 | 1.4:+79756976 | MS.gene070946:CDS |
| GCCTGCTGATGAAATGGTGA+CGG | 0.629382 | 1.4:+79759351 | MS.gene070946:CDS |
| CAAAGGGTAAATACTAGACG+TGG | 0.633754 | 1.4:-79758800 | None:intergenic |
| CTACTGATAATTACACATTG+AGG | 0.636083 | 1.4:+79758365 | MS.gene070946:CDS |
| TACCCTGAGTACGAGACACG+AGG | 0.648922 | 1.4:-79757192 | None:intergenic |
| TTTGCATTGGATTTACCAAG+AGG | 0.649561 | 1.4:+79758392 | MS.gene070946:CDS |
| ATGTTGGCACAAAGGTAGAG+AGG | 0.654238 | 1.4:+79759329 | MS.gene070946:CDS |
| ACCCTGAGTACGAGACACGA+GGG | 0.678904 | 1.4:-79757191 | None:intergenic |
| TGCTGATGAAATGGTGACGG+AGG | 0.686062 | 1.4:+79759354 | MS.gene070946:CDS |
| AGTAGTCTTGACATCCACAT+GGG | 0.706350 | 1.4:-79758347 | None:intergenic |
| AGAACAAGCGGATCTCTAAG+GGG | 0.721950 | 1.4:+79756988 | MS.gene070946:CDS |
| GGTTCATGGAGATTACTCTG+AGG | 0.741731 | 1.4:+79759306 | MS.gene070946:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAAATTAAAATTTAAA+AGG | - | chr1.4:79759181-79759200 | None:intergenic | 0.0% |
| !! | AATTGTAAAAAAATGAAAAA+AGG | - | chr1.4:79757049-79757068 | None:intergenic | 10.0% |
| !! | ATTGTAAAAAAATGAAAAAA+GGG | - | chr1.4:79757048-79757067 | None:intergenic | 10.0% |
| !! | GATATTATGAAAATAAATAT+TGG | - | chr1.4:79758939-79758958 | None:intergenic | 10.0% |
| !!! | TTTTTATTTTTTATTTACAG+GGG | + | chr1.4:79758263-79758282 | MS.gene070946:intron | 10.0% |
| !! | TTAGTATAAAAATTGTTTCA+TGG | - | chr1.4:79757817-79757836 | None:intergenic | 15.0% |
| !!! | AAAATCTTTTGACAAATTTT+TGG | + | chr1.4:79758157-79758176 | MS.gene070946:CDS | 15.0% |
| !!! | AAATCTTTTGACAAATTTTT+GGG | + | chr1.4:79758158-79758177 | MS.gene070946:CDS | 15.0% |
| !! | ATAAGCTATTTAAACAATCA+GGG | - | chr1.4:79757364-79757383 | None:intergenic | 20.0% |
| !! | CTTAATGCTTATATAGAAAA+TGG | + | chr1.4:79758003-79758022 | MS.gene070946:intron | 20.0% |
| !! | GATACATTTCATTGAATATT+TGG | + | chr1.4:79757337-79757356 | MS.gene070946:intron | 20.0% |
| !! | TAAAAAAATGAAAAAAGGGT+TGG | - | chr1.4:79757044-79757063 | None:intergenic | 20.0% |
| !! | TATAAGCTATTTAAACAATC+AGG | - | chr1.4:79757365-79757384 | None:intergenic | 20.0% |
| !! | TTATACTAAATAACATATCG+TGG | + | chr1.4:79757828-79757847 | MS.gene070946:intron | 20.0% |
| !! | TTATTTCCATAATAGCTTAT+AGG | - | chr1.4:79757486-79757505 | None:intergenic | 20.0% |
| !! | TTGTATTCATATTCAATTCT+GGG | + | chr1.4:79757080-79757099 | MS.gene070946:intron | 20.0% |
| !! | TTTGTATTCATATTCAATTC+TGG | + | chr1.4:79757079-79757098 | MS.gene070946:intron | 20.0% |
| !!! | AATAGCTTTTAATAATCTGA+AGG | - | chr1.4:79759089-79759108 | None:intergenic | 20.0% |
| ! | ACAACATTATGACAAATAGA+TGG | - | chr1.4:79758198-79758217 | None:intergenic | 25.0% |
| ! | ACTAATGTAACACCTTTATT+TGG | + | chr1.4:79758664-79758683 | MS.gene070946:intron | 25.0% |
| ! | CAAAAAATATGTTAACTAGC+GGG | - | chr1.4:79757782-79757801 | None:intergenic | 25.0% |
| ! | GCAAAAAATATGTTAACTAG+CGG | - | chr1.4:79757783-79757802 | None:intergenic | 25.0% |
| ! | TTACAAAAAACAAGACAAAG+CGG | - | chr1.4:79757233-79757252 | None:intergenic | 25.0% |
| !! | AAAAACTTTGGTTGTTACTT+TGG | + | chr1.4:79758969-79758988 | MS.gene070946:intron | 25.0% |
| !! | AAATATGTCTTAGTCTTTCA+TGG | + | chr1.4:79757945-79757964 | MS.gene070946:intron | 25.0% |
| !! | AATATGTCTTAGTCTTTCAT+GGG | + | chr1.4:79757946-79757965 | MS.gene070946:intron | 25.0% |
| !! | AATTTTCCAAGATCAAACTT+GGG | - | chr1.4:79758865-79758884 | None:intergenic | 25.0% |
| !! | GTTTTTCCTATAAGCTATTA+TGG | + | chr1.4:79757477-79757496 | MS.gene070946:intron | 25.0% |
| !! | TTTGGAAAGTTTGAAGTAAT+TGG | - | chr1.4:79759038-79759057 | None:intergenic | 25.0% |
| !! | TTTGTCATAATGTTGTTTGT+TGG | + | chr1.4:79758202-79758221 | MS.gene070946:intron | 25.0% |
| !!! | AAAGTGTCATTGATTTGATT+TGG | + | chr1.4:79759264-79759283 | MS.gene070946:intron | 25.0% |
| !!! | AAATTTTTGGGTATGATATG+CGG | + | chr1.4:79758170-79758189 | MS.gene070946:intron | 25.0% |
| !!! | AATCAATGACACTTTTTAGA+TGG | - | chr1.4:79759259-79759278 | None:intergenic | 25.0% |
| !!! | AATCACTTGTTTTGAACTTA+TGG | + | chr1.4:79758603-79758622 | MS.gene070946:intron | 25.0% |
| !!! | GATTTGATTTGTACATTGTT+GGG | + | chr1.4:79757261-79757280 | MS.gene070946:intron | 25.0% |
| !!! | TAATAATCTGAAGGTGTTTA+TGG | - | chr1.4:79759080-79759099 | None:intergenic | 25.0% |
| !!! | TGATTTGATTTGTACATTGT+TGG | + | chr1.4:79757260-79757279 | MS.gene070946:intron | 25.0% |
| AGCAGCATTTCATAAAAGAA+AGG | - | chr1.4:79758569-79758588 | None:intergenic | 30.0% | |
| CAGATATTAGTGATTCAACA+TGG | + | chr1.4:79758518-79758537 | MS.gene070946:intron | 30.0% | |
| CTACTGATAATTACACATTG+AGG | + | chr1.4:79758365-79758384 | MS.gene070946:CDS | 30.0% | |
| GTTACTTATGTTCGAAGATA+AGG | + | chr1.4:79757601-79757620 | MS.gene070946:intron | 30.0% | |
| GTTCTACCTAAAATATGTGT+TGG | - | chr1.4:79758547-79758566 | None:intergenic | 30.0% | |
| GTTTGATCTTGGAAAATTGA+TGG | + | chr1.4:79758867-79758886 | MS.gene070946:CDS | 30.0% | |
| ! | ATATGTCTTAGTCTTTCATG+GGG | + | chr1.4:79757947-79757966 | MS.gene070946:intron | 30.0% |
| ! | CAATTTTCCAAGATCAAACT+TGG | - | chr1.4:79758866-79758885 | None:intergenic | 30.0% |
| ! | TGGTATCCAACACATATTTT+AGG | + | chr1.4:79758538-79758557 | MS.gene070946:intron | 30.0% |
| !! | CTTTAAGGATCTTCACTTTT+CGG | - | chr1.4:79758840-79758859 | None:intergenic | 30.0% |
| !! | GATTTGATTTGGTTGCTATT+TGG | + | chr1.4:79759275-79759294 | MS.gene070946:intron | 30.0% |
| AAATTCATTCCCGAGATGAT+TGG | + | chr1.4:79758760-79758779 | MS.gene070946:CDS | 35.0% | |
| AACATATCGTGGAACAATAG+TGG | + | chr1.4:79757839-79757858 | MS.gene070946:intron | 35.0% | |
| AACATGCATTCAGGAAGATT+AGG | + | chr1.4:79758109-79758128 | MS.gene070946:CDS | 35.0% | |
| AATTCATTCCCGAGATGATT+GGG | + | chr1.4:79758761-79758780 | MS.gene070946:CDS | 35.0% | |
| ACAATCTAGTCAGATTAGAC+AGG | + | chr1.4:79758447-79758466 | MS.gene070946:CDS | 35.0% | |
| AGCATCATCTTGTGATTTGA+AGG | + | chr1.4:79758726-79758745 | MS.gene070946:CDS | 35.0% | |
| ATCTTGTGATTTGAAGGGAT+TGG | + | chr1.4:79758732-79758751 | MS.gene070946:CDS | 35.0% | |
| ATTTCACAACTGACAAACTG+AGG | + | chr1.4:79758290-79758309 | MS.gene070946:intron | 35.0% | |
| CTTTCCAAAAGCTCTCTATT+CGG | + | chr1.4:79759049-79759068 | MS.gene070946:intron | 35.0% | |
| GATATCATACCAATCCTTCT+TGG | - | chr1.4:79757131-79757150 | None:intergenic | 35.0% | |
| GCATCATCTTGTGATTTGAA+GGG | + | chr1.4:79758727-79758746 | MS.gene070946:CDS | 35.0% | |
| TAAGCTGCAAAAACATCTCA+TGG | + | chr1.4:79757503-79757522 | MS.gene070946:intron | 35.0% | |
| TCAAATATGCCAATCCAAAC+AGG | + | chr1.4:79757624-79757643 | MS.gene070946:intron | 35.0% | |
| TCAAATCACAAGATGATGCT+TGG | - | chr1.4:79758726-79758745 | None:intergenic | 35.0% | |
| TCAAGCTAAAAGAGAACAGA+AGG | - | chr1.4:79759205-79759224 | None:intergenic | 35.0% | |
| TCTTGTAGTGCAGAAAATAG+CGG | + | chr1.4:79757712-79757731 | MS.gene070946:intron | 35.0% | |
| TGATCTTGGAAAATTGATGG+AGG | + | chr1.4:79758870-79758889 | MS.gene070946:CDS | 35.0% | |
| TGTGTTAAATAGCAGCTATG+CGG | - | chr1.4:79757901-79757920 | None:intergenic | 35.0% | |
| TTTGCATTGGATTTACCAAG+AGG | + | chr1.4:79758392-79758411 | MS.gene070946:CDS | 35.0% | |
| ! | AACAACCAAAGTTTTTGTGC+AGG | - | chr1.4:79758965-79758984 | None:intergenic | 35.0% |
| ! | ACATTGAGGATGTTTTGCAT+TGG | + | chr1.4:79758379-79758398 | MS.gene070946:CDS | 35.0% |
| ! | ATAGCTGCTATTTAACACAC+TGG | + | chr1.4:79757902-79757921 | MS.gene070946:intron | 35.0% |
| ! | GAAGGATTGGTATGATATCA+AGG | + | chr1.4:79757132-79757151 | MS.gene070946:CDS | 35.0% |
| ! | GTTGCTGAAAGTTGATCAAT+TGG | + | chr1.4:79757969-79757988 | MS.gene070946:intron | 35.0% |
| ! | GTTTTCACACAAGCACTTAT+TGG | - | chr1.4:79759142-79759161 | None:intergenic | 35.0% |
| ! | TAGAGTGTTTGAGGTTTCAT+TGG | + | chr1.4:79758065-79758084 | MS.gene070946:CDS | 35.0% |
| ! | TTGTACATTGTTGGGTTGTT+TGG | + | chr1.4:79757269-79757288 | MS.gene070946:intron | 35.0% |
| ! | TTTCATTGGCTGATCTTCAA+GGG | + | chr1.4:79758079-79758098 | MS.gene070946:CDS | 35.0% |
| !!! | ACACACTGGTTTTAGTTACA+AGG | + | chr1.4:79757916-79757935 | MS.gene070946:intron | 35.0% |
| AAAGCTCCCAAGTTTGATCT+TGG | + | chr1.4:79758856-79758875 | MS.gene070946:CDS | 40.0% | |
| AACTCTTATTGAAGCCCATG+TGG | + | chr1.4:79758333-79758352 | MS.gene070946:CDS | 40.0% | |
| AACTGACAAACTGAGGTCAT+TGG | + | chr1.4:79758297-79758316 | MS.gene070946:intron | 40.0% | |
| AAGAACAAGCGGATCTCTAA+GGG | + | chr1.4:79756987-79757006 | MS.gene070946:CDS | 40.0% | |
| ATCCATTTGCCAAGAAGGAT+TGG | + | chr1.4:79757119-79757138 | MS.gene070946:CDS | 40.0% | |
| ATCTCTTTCCCAATCATCTC+GGG | - | chr1.4:79758772-79758791 | None:intergenic | 40.0% | |
| ATTTGGTCCTTGTAGGTTCA+TGG | + | chr1.4:79759292-79759311 | MS.gene070946:intron | 40.0% | |
| CAAAGGGTAAATACTAGACG+TGG | - | chr1.4:79758803-79758822 | None:intergenic | 40.0% | |
| CAAGCTCCAACAATTTCAGT+AGG | - | chr1.4:79759382-79759401 | None:intergenic | 40.0% | |
| CACTAAGTATACTCAGTCCA+AGG | - | chr1.4:79757651-79757670 | None:intergenic | 40.0% | |
| CTACGGATCTGACCAAATAA+AGG | - | chr1.4:79758679-79758698 | None:intergenic | 40.0% | |
| CTTGTAGTGCAGAAAATAGC+GGG | + | chr1.4:79757713-79757732 | MS.gene070946:intron | 40.0% | |
| GAATGACAGATTGCTTCAGA+TGG | + | chr1.4:79758033-79758052 | MS.gene070946:intron | 40.0% | |
| GAGGAACCTACTGAAATTGT+TGG | + | chr1.4:79759373-79759392 | MS.gene070946:CDS | 40.0% | |
| GATCAAACTTGGGAGCTTTA+AGG | - | chr1.4:79758855-79758874 | None:intergenic | 40.0% | |
| GATCTCTTTCCCAATCATCT+CGG | - | chr1.4:79758773-79758792 | None:intergenic | 40.0% | |
| GGATGAACACATTCTGCAAA+GGG | - | chr1.4:79758819-79758838 | None:intergenic | 40.0% | |
| GTAATCTCCATGAACCTACA+AGG | - | chr1.4:79759302-79759321 | None:intergenic | 40.0% | |
| TAAGAACAAGCGGATCTCTA+AGG | + | chr1.4:79756986-79757005 | MS.gene070946:CDS | 40.0% | |
| TACCAATCCTTCTTGGCAAA+TGG | - | chr1.4:79757124-79757143 | None:intergenic | 40.0% | |
| TCATCTCGGGAATGAATTTG+AGG | - | chr1.4:79758759-79758778 | None:intergenic | 40.0% | |
| TCGTTCCTGCACAAAAACTT+TGG | + | chr1.4:79758957-79758976 | MS.gene070946:intron | 40.0% | |
| TGAGAGCTGAAGATGTTCAA+GGG | + | chr1.4:79758133-79758152 | MS.gene070946:CDS | 40.0% | |
| TGATCTCAACCATCTTCCTA+CGG | - | chr1.4:79758696-79758715 | None:intergenic | 40.0% | |
| TTCTTCACCTGGAAAACTGA+AGG | - | chr1.4:79757160-79757179 | None:intergenic | 40.0% | |
| TTGAGAGCTGAAGATGTTCA+AGG | + | chr1.4:79758132-79758151 | MS.gene070946:CDS | 40.0% | |
| ! | ACTCAAGCATAGAGTGTTTG+AGG | + | chr1.4:79758056-79758075 | MS.gene070946:CDS | 40.0% |
| ! | AGTAGTCTTGACATCCACAT+GGG | - | chr1.4:79758350-79758369 | None:intergenic | 40.0% |
| ! | CATTGTTGGGTTGTTTGGTT+TGG | + | chr1.4:79757274-79757293 | MS.gene070946:intron | 40.0% |
| ! | CTTTATTTGGTCAGATCCGT+AGG | + | chr1.4:79758677-79758696 | MS.gene070946:intron | 40.0% |
| ! | GAAACCGAATAGAGAGCTTT+TGG | - | chr1.4:79759056-79759075 | None:intergenic | 40.0% |
| ! | GTTTCATTGGCTGATCTTCA+AGG | + | chr1.4:79758078-79758097 | MS.gene070946:CDS | 40.0% |
| ! | GTTTTCCAGGTGAAGAATGT+CGG | + | chr1.4:79757163-79757182 | MS.gene070946:CDS | 40.0% |
| ! | TTCATTGGCTGATCTTCAAG+GGG | + | chr1.4:79758080-79758099 | MS.gene070946:CDS | 40.0% |
| AGAACAAGCGGATCTCTAAG+GGG | + | chr1.4:79756988-79757007 | MS.gene070946:CDS | 45.0% | |
| ATGTTGGCACAAAGGTAGAG+AGG | + | chr1.4:79759329-79759348 | MS.gene070946:CDS | 45.0% | |
| CGGATGAACACATTCTGCAA+AGG | - | chr1.4:79758820-79758839 | None:intergenic | 45.0% | |
| CTGACTAGATTGTGCATAGC+AGG | - | chr1.4:79758440-79758459 | None:intergenic | 45.0% | |
| GATCCGCTTGTTCTTACCAA+CGG | - | chr1.4:79756982-79757001 | None:intergenic | 45.0% | |
| GGTTCATGGAGATTACTCTG+AGG | + | chr1.4:79759306-79759325 | MS.gene070946:intron | 45.0% | |
| TGCTGATCCATTTGCCAAGA+AGG | + | chr1.4:79757114-79757133 | MS.gene070946:CDS | 45.0% | |
| ! | ATCTCTAAGGGGAAGAAAGG+TGG | + | chr1.4:79756999-79757018 | MS.gene070946:CDS | 45.0% |
| ! | CAGTAGTCTTGACATCCACA+TGG | - | chr1.4:79758351-79758370 | None:intergenic | 45.0% |
| ! | GGAGATTACTCTGAGGATGT+TGG | + | chr1.4:79759313-79759332 | MS.gene070946:CDS | 45.0% |
| !! | GGTTGCTATTTGGTCCTTGT+AGG | + | chr1.4:79759285-79759304 | MS.gene070946:intron | 45.0% |
| !! | ATATTATGAAAATAAATATT+GGG | - | chr1.4:79758938-79758957 | None:intergenic | 5.0% |
| !!! | ATTTTTTATTTTTTATTTAC+AGG | + | chr1.4:79758261-79758280 | MS.gene070946:intron | 5.0% |
| !!! | TTTTTTATTTTTTATTTACA+GGG | + | chr1.4:79758262-79758281 | MS.gene070946:intron | 5.0% |
| ACTCAGTCCAAGGACCTGTT+TGG | - | chr1.4:79757641-79757660 | None:intergenic | 50.0% | |
| AGAGAGGCCTGCTGATGAAA+TGG | + | chr1.4:79759345-79759364 | MS.gene070946:CDS | 50.0% | |
| ATGCGGCGCTATATCGCTAT+CGG | - | chr1.4:79757884-79757903 | None:intergenic | 50.0% | |
| GCCTGCTGATGAAATGGTGA+CGG | + | chr1.4:79759351-79759370 | MS.gene070946:CDS | 50.0% | |
| GGGACGAAGAACATGCATTC+AGG | + | chr1.4:79758100-79758119 | MS.gene070946:CDS | 50.0% | |
| GTCCAAGGACCTGTTTGGAT+TGG | - | chr1.4:79757636-79757655 | None:intergenic | 50.0% | |
| TACCAAGAGGAGAGCTAACC+AGG | + | chr1.4:79758405-79758424 | MS.gene070946:CDS | 50.0% | |
| TCCGTCACCATTTCATCAGC+AGG | - | chr1.4:79759355-79759374 | None:intergenic | 50.0% | |
| TCTTGCCGACATTCTTCACC+TGG | - | chr1.4:79757171-79757190 | None:intergenic | 50.0% | |
| TGAGGTCATTGGTGCGTAAG+TGG | + | chr1.4:79758308-79758327 | MS.gene070946:intron | 50.0% | |
| TGCCAATCCAAACAGGTCCT+TGG | + | chr1.4:79757631-79757650 | MS.gene070946:intron | 50.0% | |
| TGGTCAGATCCGTAGGAAGA+TGG | + | chr1.4:79758684-79758703 | MS.gene070946:intron | 50.0% | |
| ! | CAAGGCTCCTTCAGTTTTCC+AGG | + | chr1.4:79757150-79757169 | MS.gene070946:CDS | 50.0% |
| ! | CGGATCTCTAAGGGGAAGAA+AGG | + | chr1.4:79756996-79757015 | MS.gene070946:CDS | 50.0% |
| ! | CTCTGAGGATGTTGGCACAA+AGG | + | chr1.4:79759321-79759340 | MS.gene070946:CDS | 50.0% |
| ! | GTCTCGTACTCAGGGTACTA+AGG | + | chr1.4:79757198-79757217 | MS.gene070946:CDS | 50.0% |
| ! | TGGCCGTTGGTAAGAACAAG+CGG | + | chr1.4:79756976-79756995 | MS.gene070946:CDS | 50.0% |
| !! | TGCTGATGAAATGGTGACGG+AGG | + | chr1.4:79759354-79759373 | MS.gene070946:CDS | 50.0% |
| ACCCTCGTGTCTCGTACTCA+GGG | + | chr1.4:79757190-79757209 | MS.gene070946:CDS | 55.0% | |
| ACCCTGAGTACGAGACACGA+GGG | - | chr1.4:79757194-79757213 | None:intergenic | 55.0% | |
| CATAGCAGGTCCTCTTCACC+TGG | - | chr1.4:79758426-79758445 | None:intergenic | 55.0% | |
| GGAGAGCTAACCAGGTGAAG+AGG | + | chr1.4:79758413-79758432 | MS.gene070946:CDS | 55.0% | |
| TACCCTGAGTACGAGACACG+AGG | - | chr1.4:79757195-79757214 | None:intergenic | 55.0% | |
| TGCGGCGCTATATCGCTATC+GGG | - | chr1.4:79757883-79757902 | None:intergenic | 55.0% | |
| ! | CACCTGGTTAGCTCTCCTCT+TGG | - | chr1.4:79758410-79758429 | None:intergenic | 55.0% |
| GACCCTCGTGTCTCGTACTC+AGG | + | chr1.4:79757189-79757208 | MS.gene070946:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 79756975 | 79759402 | 79756975 | ID=MS.gene070946 |
| chr1.4 | mRNA | 79756975 | 79759402 | 79756975 | ID=MS.gene070946.t1;Parent=MS.gene070946 |
| chr1.4 | exon | 79756975 | 79757033 | 79756975 | ID=MS.gene070946.t1.exon1;Parent=MS.gene070946.t1 |
| chr1.4 | CDS | 79756975 | 79757033 | 79756975 | ID=cds.MS.gene070946.t1;Parent=MS.gene070946.t1 |
| chr1.4 | exon | 79757114 | 79757219 | 79757114 | ID=MS.gene070946.t1.exon2;Parent=MS.gene070946.t1 |
| chr1.4 | CDS | 79757114 | 79757219 | 79757114 | ID=cds.MS.gene070946.t1;Parent=MS.gene070946.t1 |
| chr1.4 | exon | 79758042 | 79758179 | 79758042 | ID=MS.gene070946.t1.exon3;Parent=MS.gene070946.t1 |
| chr1.4 | CDS | 79758042 | 79758179 | 79758042 | ID=cds.MS.gene070946.t1;Parent=MS.gene070946.t1 |
| chr1.4 | exon | 79758328 | 79758468 | 79758328 | ID=MS.gene070946.t1.exon4;Parent=MS.gene070946.t1 |
| chr1.4 | CDS | 79758328 | 79758468 | 79758328 | ID=cds.MS.gene070946.t1;Parent=MS.gene070946.t1 |
| chr1.4 | exon | 79758691 | 79758891 | 79758691 | ID=MS.gene070946.t1.exon5;Parent=MS.gene070946.t1 |
| chr1.4 | CDS | 79758691 | 79758891 | 79758691 | ID=cds.MS.gene070946.t1;Parent=MS.gene070946.t1 |
| chr1.4 | exon | 79759307 | 79759402 | 79759307 | ID=MS.gene070946.t1.exon6;Parent=MS.gene070946.t1 |
| chr1.4 | CDS | 79759307 | 79759402 | 79759307 | ID=cds.MS.gene070946.t1;Parent=MS.gene070946.t1 |
| Gene Sequence |
| Protein sequence |
