Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95803.t1 | XP_013469779.1 | 98.9 | 261 | 3 | 0 | 1 | 261 | 1 | 261 | 1.90E-140 | 508.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95803.t1 | Q8GTE3 | 92.0 | 261 | 21 | 0 | 1 | 261 | 1 | 261 | 1.6e-132 | 473.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95803.t1 | B7FLW8 | 98.9 | 261 | 3 | 0 | 1 | 261 | 1 | 261 | 1.4e-140 | 508.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050134 | MS.gene95803 | 0.853866 | 1.80E-61 | -1.69E-46 |
| MS.gene050252 | MS.gene95803 | 0.804943 | 1.69E-49 | -1.69E-46 |
| MS.gene050791 | MS.gene95803 | 0.871381 | 7.14E-67 | -1.69E-46 |
| MS.gene050912 | MS.gene95803 | 0.829224 | 5.80E-55 | -1.69E-46 |
| MS.gene051963 | MS.gene95803 | 0.81232 | 4.50E-51 | -1.69E-46 |
| MS.gene051984 | MS.gene95803 | 0.814028 | 1.90E-51 | -1.69E-46 |
| MS.gene053224 | MS.gene95803 | 0.846404 | 2.22E-59 | -1.69E-46 |
| MS.gene054624 | MS.gene95803 | 0.803797 | 2.94E-49 | -1.69E-46 |
| MS.gene057052 | MS.gene95803 | 0.814376 | 1.59E-51 | -1.69E-46 |
| MS.gene057165 | MS.gene95803 | 0.872831 | 2.35E-67 | -1.69E-46 |
| MS.gene057272 | MS.gene95803 | 0.881644 | 2.02E-70 | -1.69E-46 |
| MS.gene058994 | MS.gene95803 | 0.805311 | 1.42E-49 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95803.t1 | MTR_1g103100 | 98.851 | 261 | 3 | 0 | 1 | 261 | 1 | 261 | 0.0 | 534 |
| MS.gene95803.t1 | MTR_3g012040 | 96.935 | 261 | 8 | 0 | 1 | 261 | 1 | 261 | 0.0 | 521 |
| MS.gene95803.t1 | MTR_5g006440 | 94.253 | 261 | 15 | 0 | 1 | 261 | 1 | 261 | 1.46e-176 | 486 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95803.t1 | AT3G04840 | 85.115 | 262 | 38 | 1 | 1 | 261 | 1 | 262 | 4.97e-163 | 452 |
| MS.gene95803.t1 | AT4G34670 | 85.115 | 262 | 38 | 1 | 1 | 261 | 1 | 262 | 1.54e-161 | 448 |
Find 75 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCAAACTTGGGAGCTTTA+AGG | 0.168578 | 1.1:-74003024 | None:intergenic |
| GATATCATACCAATCCTTCT+TGG | 0.295389 | 1.1:-74001303 | None:intergenic |
| ATTTGGTCCTTGTAGGTTCA+TGG | 0.319619 | 1.1:+74003464 | MS.gene95803:intron |
| AAAGCTCCCAAGTTTGATCT+TGG | 0.357514 | 1.1:+74003028 | MS.gene95803:CDS |
| TAAGAACAAGCGGATCTCTA+AGG | 0.365175 | 1.1:+74001143 | MS.gene95803:CDS |
| GTTTGATCTTGGAAAATTGA+TGG | 0.369245 | 1.1:+74003039 | MS.gene95803:CDS |
| AAATTCATTCCCGAGATGAT+TGG | 0.381702 | 1.1:+74002932 | MS.gene95803:CDS |
| GGGACGAAGAACATGCATTC+AGG | 0.393353 | 1.1:+74002272 | MS.gene95803:CDS |
| GACCCTCGTGTCTCGTACTC+AGG | 0.406163 | 1.1:+74001364 | MS.gene95803:CDS |
| TACCAATCCTTCTTGGCAAA+TGG | 0.412105 | 1.1:-74001296 | None:intergenic |
| TAGAGTGTTTGAGGTTTCAT+TGG | 0.413434 | 1.1:+74002237 | MS.gene95803:CDS |
| AATTCATTCCCGAGATGATT+GGG | 0.425172 | 1.1:+74002933 | MS.gene95803:CDS |
| GTTTCATTGGCTGATCTTCA+AGG | 0.434675 | 1.1:+74002250 | MS.gene95803:CDS |
| AGCATCATCTTGTGATTTGA+AGG | 0.436321 | 1.1:+74002898 | MS.gene95803:CDS |
| TGCTGATCCATTTGCCAAGA+AGG | 0.436339 | 1.1:+74001289 | MS.gene95803:CDS |
| TCCGTCACCATTTCATCAGC+AGG | 0.444686 | 1.1:-74003524 | None:intergenic |
| ACTCAAGCATAGAGTGTTTG+AGG | 0.454600 | 1.1:+74002228 | MS.gene95803:CDS |
| TACCAAGAGGAGAGCTAACC+AGG | 0.455144 | 1.1:+74002577 | MS.gene95803:CDS |
| ATCTTGTGATTTGAAGGGAT+TGG | 0.459981 | 1.1:+74002904 | MS.gene95803:CDS |
| AACATGCATTCAGGAAGATT+AGG | 0.462005 | 1.1:+74002281 | MS.gene95803:CDS |
| ATCCATTTGCCAAGAAGGAT+TGG | 0.465718 | 1.1:+74001294 | MS.gene95803:CDS |
| ATCTCTTTCCCAATCATCTC+GGG | 0.472425 | 1.1:-74002941 | None:intergenic |
| CTGACTAGATTGTGCATAGC+AGG | 0.478379 | 1.1:-74002609 | None:intergenic |
| GAGGAACCTACTGAAATTGT+TGG | 0.484047 | 1.1:+74003545 | MS.gene95803:CDS |
| GAAGGATTGGTATGATATCA+AGG | 0.488212 | 1.1:+74001307 | MS.gene95803:CDS |
| GTCTCGTACTCAGGGTACTA+AGG | 0.497238 | 1.1:+74001373 | MS.gene95803:CDS |
| TGGTCAGATCCGTAGGAAGA+TGG | 0.499805 | 1.1:+74002856 | MS.gene95803:intron |
| CACCTGGTTAGCTCTCCTCT+TGG | 0.502596 | 1.1:-74002579 | None:intergenic |
| AACTGACAAACTGAGGTCAT+TGG | 0.506332 | 1.1:+74002469 | MS.gene95803:CDS |
| TGAGGTCATTGGTGCGTAAG+TGG | 0.507827 | 1.1:+74002480 | MS.gene95803:CDS |
| TCAAATCACAAGATGATGCT+TGG | 0.512552 | 1.1:-74002895 | None:intergenic |
| CGGATCTCTAAGGGGAAGAA+AGG | 0.516719 | 1.1:+74001153 | MS.gene95803:CDS |
| TCATCTCGGGAATGAATTTG+AGG | 0.518795 | 1.1:-74002928 | None:intergenic |
| CATAGCAGGTCCTCTTCACC+TGG | 0.518854 | 1.1:-74002595 | None:intergenic |
| GGATGAACACATTCTGCAAA+GGG | 0.521000 | 1.1:-74002988 | None:intergenic |
| AAGAACAAGCGGATCTCTAA+GGG | 0.521243 | 1.1:+74001144 | MS.gene95803:CDS |
| CTTGTTCTTACCAACGGCCA+TGG | 0.523346 | 1.1:-74001130 | None:intergenic |
| TTTCATTGGCTGATCTTCAA+GGG | 0.523908 | 1.1:+74002251 | MS.gene95803:CDS |
| AGAGAGGCCTGCTGATGAAA+TGG | 0.532099 | 1.1:+74003517 | MS.gene95803:CDS |
| TCTTGCCGACATTCTTCACC+TGG | 0.534041 | 1.1:-74001343 | None:intergenic |
| CTTTATTTGGTCAGATCCGT+AGG | 0.534876 | 1.1:+74002849 | MS.gene95803:intron |
| TTGAGAGCTGAAGATGTTCA+AGG | 0.537527 | 1.1:+74002304 | MS.gene95803:CDS |
| CGGATGAACACATTCTGCAA+AGG | 0.540177 | 1.1:-74002989 | None:intergenic |
| GCATCATCTTGTGATTTGAA+GGG | 0.543515 | 1.1:+74002899 | MS.gene95803:CDS |
| GATCTCTTTCCCAATCATCT+CGG | 0.545949 | 1.1:-74002942 | None:intergenic |
| GGAGAGCTAACCAGGTGAAG+AGG | 0.557404 | 1.1:+74002585 | MS.gene95803:CDS |
| GAATGACAGATTGCTTCAGA+TGG | 0.560187 | 1.1:+74002205 | MS.gene95803:intron |
| CTCTGAGGATGTTGGCACAA+AGG | 0.562498 | 1.1:+74003493 | MS.gene95803:CDS |
| GATCCGCTTGTTCTTACCAA+CGG | 0.569816 | 1.1:-74001136 | None:intergenic |
| ACAATCTAGTCAGATTAGAC+AGG | 0.580594 | 1.1:+74002619 | MS.gene95803:CDS |
| GGAGATTACTCTGAGGATGT+TGG | 0.587473 | 1.1:+74003485 | MS.gene95803:CDS |
| TTCTTCACCTGGAAAACTGA+AGG | 0.588083 | 1.1:-74001332 | None:intergenic |
| TGATCTCAACCATCTTCCTA+CGG | 0.590794 | 1.1:-74002865 | None:intergenic |
| TTCATTGGCTGATCTTCAAG+GGG | 0.595752 | 1.1:+74002252 | MS.gene95803:CDS |
| CAGTAGTCTTGACATCCACA+TGG | 0.596992 | 1.1:-74002520 | None:intergenic |
| CAAGCTCCAACAATTTCAGT+AGG | 0.597980 | 1.1:-74003551 | None:intergenic |
| AACAGTGAAACCATGGCCGT+TGG | 0.599680 | 1.1:+74001120 | None:intergenic |
| AACTCTTATTGAAGCCCATG+TGG | 0.605950 | 1.1:+74002505 | MS.gene95803:CDS |
| TGATCTTGGAAAATTGATGG+AGG | 0.612140 | 1.1:+74003042 | MS.gene95803:CDS |
| TGAGAGCTGAAGATGTTCAA+GGG | 0.612312 | 1.1:+74002305 | MS.gene95803:CDS |
| ACCCTCGTGTCTCGTACTCA+GGG | 0.615233 | 1.1:+74001365 | MS.gene95803:CDS |
| ATCTCTAAGGGGAAGAAAGG+TGG | 0.621403 | 1.1:+74001156 | MS.gene95803:CDS |
| TGGCCGTTGGTAAGAACAAG+CGG | 0.624911 | 1.1:+74001133 | MS.gene95803:CDS |
| GCCTGCTGATGAAATGGTGA+CGG | 0.629382 | 1.1:+74003523 | MS.gene95803:CDS |
| CAAAGGGTAAATACTAGACG+TGG | 0.633754 | 1.1:-74002972 | None:intergenic |
| CTACTGATAATTACACATTG+AGG | 0.636083 | 1.1:+74002537 | MS.gene95803:CDS |
| TACCCTGAGTACGAGACACG+AGG | 0.648922 | 1.1:-74001367 | None:intergenic |
| TTTGCATTGGATTTACCAAG+AGG | 0.649561 | 1.1:+74002564 | MS.gene95803:CDS |
| ATGTTGGCACAAAGGTAGAG+AGG | 0.654238 | 1.1:+74003501 | MS.gene95803:CDS |
| ACCCTGAGTACGAGACACGA+GGG | 0.678904 | 1.1:-74001366 | None:intergenic |
| ATTTCACAACTGACAAACTG+AGG | 0.681977 | 1.1:+74002462 | MS.gene95803:CDS |
| TGCTGATGAAATGGTGACGG+AGG | 0.686062 | 1.1:+74003526 | MS.gene95803:CDS |
| AGTAGTCTTGACATCCACAT+GGG | 0.706350 | 1.1:-74002519 | None:intergenic |
| AGAACAAGCGGATCTCTAAG+GGG | 0.721950 | 1.1:+74001145 | MS.gene95803:CDS |
| GGTTCATGGAGATTACTCTG+AGG | 0.741731 | 1.1:+74003478 | MS.gene95803:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAAATTAAAATTTAAA+AGG | - | chr1.1:74003353-74003372 | None:intergenic | 0.0% |
| !! | GATATTATGAAAATAAATAT+TGG | - | chr1.1:74003111-74003130 | None:intergenic | 10.0% |
| !!! | TTTTTATTTTTTATTTACAG+GGG | + | chr1.1:74002435-74002454 | MS.gene95803:intron | 10.0% |
| !! | TAAAAAAATGAAACTTTGAA+AGG | - | chr1.1:74001219-74001238 | None:intergenic | 15.0% |
| !! | TTAGTATAAAAATTGTTTCA+TGG | - | chr1.1:74001992-74002011 | None:intergenic | 15.0% |
| !!! | AAAATCTTTTGACAAATTTT+TGG | + | chr1.1:74002329-74002348 | MS.gene95803:CDS | 15.0% |
| !!! | AAATCTTTTGACAAATTTTT+GGG | + | chr1.1:74002330-74002349 | MS.gene95803:CDS | 15.0% |
| !! | ATAAGCTATTTAAACAATCA+GGG | - | chr1.1:74001539-74001558 | None:intergenic | 20.0% |
| !! | CTTAATGCTTATATAGAAAA+TGG | + | chr1.1:74002175-74002194 | MS.gene95803:intron | 20.0% |
| !! | GATACATTTCATTGAATATT+TGG | + | chr1.1:74001512-74001531 | MS.gene95803:intron | 20.0% |
| !! | TATAAGCTATTTAAACAATC+AGG | - | chr1.1:74001540-74001559 | None:intergenic | 20.0% |
| !! | TTATACTAAATAACATATCG+TGG | + | chr1.1:74002003-74002022 | MS.gene95803:intron | 20.0% |
| !! | TTATTTCCATAATAGCTTAT+AGG | - | chr1.1:74001661-74001680 | None:intergenic | 20.0% |
| !! | TTGTATTCATATTCAATTCT+GGG | + | chr1.1:74001255-74001274 | MS.gene95803:intron | 20.0% |
| !! | TTTGTATTCATATTCAATTC+TGG | + | chr1.1:74001254-74001273 | MS.gene95803:intron | 20.0% |
| !!! | AATAGCTTTTAATAATCTGA+AGG | - | chr1.1:74003261-74003280 | None:intergenic | 20.0% |
| ! | ACAACATTATGACAAATAGA+TGG | - | chr1.1:74002370-74002389 | None:intergenic | 25.0% |
| ! | ACTAATGTAACACCTTTATT+TGG | + | chr1.1:74002836-74002855 | MS.gene95803:intron | 25.0% |
| ! | CAAAAAATATGTTAACTAGC+GGG | - | chr1.1:74001957-74001976 | None:intergenic | 25.0% |
| ! | GCAAAAAATATGTTAACTAG+CGG | - | chr1.1:74001958-74001977 | None:intergenic | 25.0% |
| ! | TTACAAAAAACAAGACAAAG+CGG | - | chr1.1:74001408-74001427 | None:intergenic | 25.0% |
| ! | TTTGAAAGGAAATAGAAAAC+GGG | - | chr1.1:74001205-74001224 | None:intergenic | 25.0% |
| !! | AAAAACTTTGGTTGTTACTT+TGG | + | chr1.1:74003141-74003160 | MS.gene95803:intron | 25.0% |
| !! | AAATATGTCTTAGTCTTTCA+TGG | + | chr1.1:74002120-74002139 | MS.gene95803:intron | 25.0% |
| !! | AATATGTCTTAGTCTTTCAT+GGG | + | chr1.1:74002121-74002140 | MS.gene95803:intron | 25.0% |
| !! | AATTTTCCAAGATCAAACTT+GGG | - | chr1.1:74003037-74003056 | None:intergenic | 25.0% |
| !! | CTTTGAAAGGAAATAGAAAA+CGG | - | chr1.1:74001206-74001225 | None:intergenic | 25.0% |
| !! | GTTTTTCCTATAAGCTATTA+TGG | + | chr1.1:74001652-74001671 | MS.gene95803:intron | 25.0% |
| !! | TTTGGAAAGTTTGAAGTAAT+TGG | - | chr1.1:74003210-74003229 | None:intergenic | 25.0% |
| !! | TTTGTCATAATGTTGTTTGT+TGG | + | chr1.1:74002374-74002393 | MS.gene95803:intron | 25.0% |
| !!! | AAAGTGTCATTGATTTGATT+TGG | + | chr1.1:74003436-74003455 | MS.gene95803:intron | 25.0% |
| !!! | AAATTTTTGGGTATGATATG+CGG | + | chr1.1:74002342-74002361 | MS.gene95803:intron | 25.0% |
| !!! | AATCAATGACACTTTTTAGA+TGG | - | chr1.1:74003431-74003450 | None:intergenic | 25.0% |
| !!! | AATCACTTGTTTTGAACTTA+TGG | + | chr1.1:74002775-74002794 | MS.gene95803:intron | 25.0% |
| !!! | GATTTGATTTGTACATTGTT+AGG | + | chr1.1:74001436-74001455 | MS.gene95803:intron | 25.0% |
| !!! | TAATAATCTGAAGGTGTTTA+TGG | - | chr1.1:74003252-74003271 | None:intergenic | 25.0% |
| AGCAGCATTTCATAAAAGAA+AGG | - | chr1.1:74002741-74002760 | None:intergenic | 30.0% | |
| CAGATATTAGTGATTCAACA+TGG | + | chr1.1:74002690-74002709 | MS.gene95803:intron | 30.0% | |
| CTACTGATAATTACACATTG+AGG | + | chr1.1:74002537-74002556 | MS.gene95803:CDS | 30.0% | |
| GTTACTTATGTTCGAAGATA+AGG | + | chr1.1:74001776-74001795 | MS.gene95803:intron | 30.0% | |
| GTTCTACCTAAAATATGTGT+TGG | - | chr1.1:74002719-74002738 | None:intergenic | 30.0% | |
| GTTTGATCTTGGAAAATTGA+TGG | + | chr1.1:74003039-74003058 | MS.gene95803:CDS | 30.0% | |
| ! | ATATGTCTTAGTCTTTCATG+GGG | + | chr1.1:74002122-74002141 | MS.gene95803:intron | 30.0% |
| ! | CAATTTTCCAAGATCAAACT+TGG | - | chr1.1:74003038-74003057 | None:intergenic | 30.0% |
| ! | TGGTATCCAACACATATTTT+AGG | + | chr1.1:74002710-74002729 | MS.gene95803:intron | 30.0% |
| ! | TTGTACATTGTTAGGTTGTT+TGG | + | chr1.1:74001444-74001463 | MS.gene95803:intron | 30.0% |
| !! | CTTTAAGGATCTTCACTTTT+CGG | - | chr1.1:74003012-74003031 | None:intergenic | 30.0% |
| !! | GATTTGATTTGGTTGCTATT+TGG | + | chr1.1:74003447-74003466 | MS.gene95803:intron | 30.0% |
| AAAGGAAATAGAAAACGGGT+TGG | - | chr1.1:74001201-74001220 | None:intergenic | 35.0% | |
| AAATTCATTCCCGAGATGAT+TGG | + | chr1.1:74002932-74002951 | MS.gene95803:CDS | 35.0% | |
| AACATATCGTGGAACAATAG+TGG | + | chr1.1:74002014-74002033 | MS.gene95803:intron | 35.0% | |
| AACATGCATTCAGGAAGATT+AGG | + | chr1.1:74002281-74002300 | MS.gene95803:CDS | 35.0% | |
| AATTCATTCCCGAGATGATT+GGG | + | chr1.1:74002933-74002952 | MS.gene95803:CDS | 35.0% | |
| ACAATCTAGTCAGATTAGAC+AGG | + | chr1.1:74002619-74002638 | MS.gene95803:CDS | 35.0% | |
| AGCATCATCTTGTGATTTGA+AGG | + | chr1.1:74002898-74002917 | MS.gene95803:CDS | 35.0% | |
| ATCTTGTGATTTGAAGGGAT+TGG | + | chr1.1:74002904-74002923 | MS.gene95803:CDS | 35.0% | |
| ATTTCACAACTGACAAACTG+AGG | + | chr1.1:74002462-74002481 | MS.gene95803:CDS | 35.0% | |
| CTTTCCAAAAGCTCTCTATT+CGG | + | chr1.1:74003221-74003240 | MS.gene95803:intron | 35.0% | |
| GATATCATACCAATCCTTCT+TGG | - | chr1.1:74001306-74001325 | None:intergenic | 35.0% | |
| GCATCATCTTGTGATTTGAA+GGG | + | chr1.1:74002899-74002918 | MS.gene95803:CDS | 35.0% | |
| TAAGCTGCAAAAACATCTCA+TGG | + | chr1.1:74001678-74001697 | MS.gene95803:intron | 35.0% | |
| TCAAATATGCCAATCCAAAC+AGG | + | chr1.1:74001799-74001818 | MS.gene95803:intron | 35.0% | |
| TCAAATCACAAGATGATGCT+TGG | - | chr1.1:74002898-74002917 | None:intergenic | 35.0% | |
| TCAAGCTAAAAGAGAACAGA+AGG | - | chr1.1:74003377-74003396 | None:intergenic | 35.0% | |
| TCTTGTAGTGCAGAAAATAG+CGG | + | chr1.1:74001887-74001906 | MS.gene95803:intron | 35.0% | |
| TGATCTTGGAAAATTGATGG+AGG | + | chr1.1:74003042-74003061 | MS.gene95803:CDS | 35.0% | |
| TGTGTTAAATAGCAGCTATG+CGG | - | chr1.1:74002076-74002095 | None:intergenic | 35.0% | |
| TTTGCATTGGATTTACCAAG+AGG | + | chr1.1:74002564-74002583 | MS.gene95803:CDS | 35.0% | |
| ! | AACAACCAAAGTTTTTGTGC+AGG | - | chr1.1:74003137-74003156 | None:intergenic | 35.0% |
| ! | ACATTGAGGATGTTTTGCAT+TGG | + | chr1.1:74002551-74002570 | MS.gene95803:CDS | 35.0% |
| ! | ATAGCTGCTATTTAACACAC+TGG | + | chr1.1:74002077-74002096 | MS.gene95803:intron | 35.0% |
| ! | CATTGTTAGGTTGTTTGGTT+TGG | + | chr1.1:74001449-74001468 | MS.gene95803:intron | 35.0% |
| ! | GAAGGATTGGTATGATATCA+AGG | + | chr1.1:74001307-74001326 | MS.gene95803:CDS | 35.0% |
| ! | GTTTTCACACAAGCACTTAT+TGG | - | chr1.1:74003314-74003333 | None:intergenic | 35.0% |
| ! | TAGAGTGTTTGAGGTTTCAT+TGG | + | chr1.1:74002237-74002256 | MS.gene95803:CDS | 35.0% |
| ! | TTTCATTGGCTGATCTTCAA+GGG | + | chr1.1:74002251-74002270 | MS.gene95803:CDS | 35.0% |
| !!! | ACACACTGGTTTTAGTTACA+AGG | + | chr1.1:74002091-74002110 | MS.gene95803:intron | 35.0% |
| AAAGCTCCCAAGTTTGATCT+TGG | + | chr1.1:74003028-74003047 | MS.gene95803:CDS | 40.0% | |
| AACTCTTATTGAAGCCCATG+TGG | + | chr1.1:74002505-74002524 | MS.gene95803:CDS | 40.0% | |
| AACTGACAAACTGAGGTCAT+TGG | + | chr1.1:74002469-74002488 | MS.gene95803:CDS | 40.0% | |
| AAGAACAAGCGGATCTCTAA+GGG | + | chr1.1:74001144-74001163 | MS.gene95803:CDS | 40.0% | |
| ATCCATTTGCCAAGAAGGAT+TGG | + | chr1.1:74001294-74001313 | MS.gene95803:CDS | 40.0% | |
| ATCTCTTTCCCAATCATCTC+GGG | - | chr1.1:74002944-74002963 | None:intergenic | 40.0% | |
| ATTTGGTCCTTGTAGGTTCA+TGG | + | chr1.1:74003464-74003483 | MS.gene95803:intron | 40.0% | |
| CAAAGGGTAAATACTAGACG+TGG | - | chr1.1:74002975-74002994 | None:intergenic | 40.0% | |
| CAAGCTCCAACAATTTCAGT+AGG | - | chr1.1:74003554-74003573 | None:intergenic | 40.0% | |
| CACTAAGTATACTCAGTCCA+AGG | - | chr1.1:74001826-74001845 | None:intergenic | 40.0% | |
| CTACGGATCTGACCAAATAA+AGG | - | chr1.1:74002851-74002870 | None:intergenic | 40.0% | |
| CTTGTAGTGCAGAAAATAGC+GGG | + | chr1.1:74001888-74001907 | MS.gene95803:intron | 40.0% | |
| GAATGACAGATTGCTTCAGA+TGG | + | chr1.1:74002205-74002224 | MS.gene95803:intron | 40.0% | |
| GAGGAACCTACTGAAATTGT+TGG | + | chr1.1:74003545-74003564 | MS.gene95803:CDS | 40.0% | |
| GATCAAACTTGGGAGCTTTA+AGG | - | chr1.1:74003027-74003046 | None:intergenic | 40.0% | |
| GATCTCTTTCCCAATCATCT+CGG | - | chr1.1:74002945-74002964 | None:intergenic | 40.0% | |
| GGATGAACACATTCTGCAAA+GGG | - | chr1.1:74002991-74003010 | None:intergenic | 40.0% | |
| GTAATCTCCATGAACCTACA+AGG | - | chr1.1:74003474-74003493 | None:intergenic | 40.0% | |
| TAAGAACAAGCGGATCTCTA+AGG | + | chr1.1:74001143-74001162 | MS.gene95803:CDS | 40.0% | |
| TACCAATCCTTCTTGGCAAA+TGG | - | chr1.1:74001299-74001318 | None:intergenic | 40.0% | |
| TCATCTCGGGAATGAATTTG+AGG | - | chr1.1:74002931-74002950 | None:intergenic | 40.0% | |
| TCGTTCCTGCACAAAAACTT+TGG | + | chr1.1:74003129-74003148 | MS.gene95803:intron | 40.0% | |
| TGAGAGCTGAAGATGTTCAA+GGG | + | chr1.1:74002305-74002324 | MS.gene95803:CDS | 40.0% | |
| TGATCTCAACCATCTTCCTA+CGG | - | chr1.1:74002868-74002887 | None:intergenic | 40.0% | |
| TTCTTCACCTGGAAAACTGA+AGG | - | chr1.1:74001335-74001354 | None:intergenic | 40.0% | |
| TTGAGAGCTGAAGATGTTCA+AGG | + | chr1.1:74002304-74002323 | MS.gene95803:CDS | 40.0% | |
| ! | ACTCAAGCATAGAGTGTTTG+AGG | + | chr1.1:74002228-74002247 | MS.gene95803:CDS | 40.0% |
| ! | AGTAGTCTTGACATCCACAT+GGG | - | chr1.1:74002522-74002541 | None:intergenic | 40.0% |
| ! | CTTTATTTGGTCAGATCCGT+AGG | + | chr1.1:74002849-74002868 | MS.gene95803:intron | 40.0% |
| ! | GAAACCGAATAGAGAGCTTT+TGG | - | chr1.1:74003228-74003247 | None:intergenic | 40.0% |
| ! | GTTTCATTGGCTGATCTTCA+AGG | + | chr1.1:74002250-74002269 | MS.gene95803:CDS | 40.0% |
| ! | GTTTTCCAGGTGAAGAATGT+CGG | + | chr1.1:74001338-74001357 | MS.gene95803:CDS | 40.0% |
| ! | TTCATTGGCTGATCTTCAAG+GGG | + | chr1.1:74002252-74002271 | MS.gene95803:CDS | 40.0% |
| AGAACAAGCGGATCTCTAAG+GGG | + | chr1.1:74001145-74001164 | MS.gene95803:CDS | 45.0% | |
| ATGTTGGCACAAAGGTAGAG+AGG | + | chr1.1:74003501-74003520 | MS.gene95803:CDS | 45.0% | |
| CGGATGAACACATTCTGCAA+AGG | - | chr1.1:74002992-74003011 | None:intergenic | 45.0% | |
| CTGACTAGATTGTGCATAGC+AGG | - | chr1.1:74002612-74002631 | None:intergenic | 45.0% | |
| GATCCGCTTGTTCTTACCAA+CGG | - | chr1.1:74001139-74001158 | None:intergenic | 45.0% | |
| GGTTCATGGAGATTACTCTG+AGG | + | chr1.1:74003478-74003497 | MS.gene95803:intron | 45.0% | |
| TGCTGATCCATTTGCCAAGA+AGG | + | chr1.1:74001289-74001308 | MS.gene95803:CDS | 45.0% | |
| ! | ATCTCTAAGGGGAAGAAAGG+TGG | + | chr1.1:74001156-74001175 | MS.gene95803:CDS | 45.0% |
| ! | CAGTAGTCTTGACATCCACA+TGG | - | chr1.1:74002523-74002542 | None:intergenic | 45.0% |
| ! | GGAGATTACTCTGAGGATGT+TGG | + | chr1.1:74003485-74003504 | MS.gene95803:CDS | 45.0% |
| !! | GGTTGCTATTTGGTCCTTGT+AGG | + | chr1.1:74003457-74003476 | MS.gene95803:intron | 45.0% |
| !! | ATATTATGAAAATAAATATT+GGG | - | chr1.1:74003110-74003129 | None:intergenic | 5.0% |
| !!! | ATTTTTTATTTTTTATTTAC+AGG | + | chr1.1:74002433-74002452 | MS.gene95803:intron | 5.0% |
| !!! | TTTTTTATTTTTTATTTACA+GGG | + | chr1.1:74002434-74002453 | MS.gene95803:intron | 5.0% |
| ACTCAGTCCAAGGACCTGTT+TGG | - | chr1.1:74001816-74001835 | None:intergenic | 50.0% | |
| AGAGAGGCCTGCTGATGAAA+TGG | + | chr1.1:74003517-74003536 | MS.gene95803:CDS | 50.0% | |
| ATGCGGCGCTATATCGCTAT+CGG | - | chr1.1:74002059-74002078 | None:intergenic | 50.0% | |
| GCCTGCTGATGAAATGGTGA+CGG | + | chr1.1:74003523-74003542 | MS.gene95803:CDS | 50.0% | |
| GGGACGAAGAACATGCATTC+AGG | + | chr1.1:74002272-74002291 | MS.gene95803:CDS | 50.0% | |
| GTCCAAGGACCTGTTTGGAT+TGG | - | chr1.1:74001811-74001830 | None:intergenic | 50.0% | |
| TACCAAGAGGAGAGCTAACC+AGG | + | chr1.1:74002577-74002596 | MS.gene95803:CDS | 50.0% | |
| TCCGTCACCATTTCATCAGC+AGG | - | chr1.1:74003527-74003546 | None:intergenic | 50.0% | |
| TCTTGCCGACATTCTTCACC+TGG | - | chr1.1:74001346-74001365 | None:intergenic | 50.0% | |
| TGAGGTCATTGGTGCGTAAG+TGG | + | chr1.1:74002480-74002499 | MS.gene95803:CDS | 50.0% | |
| TGCCAATCCAAACAGGTCCT+TGG | + | chr1.1:74001806-74001825 | MS.gene95803:intron | 50.0% | |
| TGGTCAGATCCGTAGGAAGA+TGG | + | chr1.1:74002856-74002875 | MS.gene95803:intron | 50.0% | |
| ! | CAAGGCTCCTTCAGTTTTCC+AGG | + | chr1.1:74001325-74001344 | MS.gene95803:CDS | 50.0% |
| ! | CGGATCTCTAAGGGGAAGAA+AGG | + | chr1.1:74001153-74001172 | MS.gene95803:CDS | 50.0% |
| ! | CTCTGAGGATGTTGGCACAA+AGG | + | chr1.1:74003493-74003512 | MS.gene95803:CDS | 50.0% |
| ! | GTCTCGTACTCAGGGTACTA+AGG | + | chr1.1:74001373-74001392 | MS.gene95803:CDS | 50.0% |
| ! | TGGCCGTTGGTAAGAACAAG+CGG | + | chr1.1:74001133-74001152 | MS.gene95803:CDS | 50.0% |
| !! | TGCTGATGAAATGGTGACGG+AGG | + | chr1.1:74003526-74003545 | MS.gene95803:CDS | 50.0% |
| ACCCTCGTGTCTCGTACTCA+GGG | + | chr1.1:74001365-74001384 | MS.gene95803:CDS | 55.0% | |
| ACCCTGAGTACGAGACACGA+GGG | - | chr1.1:74001369-74001388 | None:intergenic | 55.0% | |
| CATAGCAGGTCCTCTTCACC+TGG | - | chr1.1:74002598-74002617 | None:intergenic | 55.0% | |
| GGAGAGCTAACCAGGTGAAG+AGG | + | chr1.1:74002585-74002604 | MS.gene95803:CDS | 55.0% | |
| TACCCTGAGTACGAGACACG+AGG | - | chr1.1:74001370-74001389 | None:intergenic | 55.0% | |
| TGCGGCGCTATATCGCTATC+GGG | - | chr1.1:74002058-74002077 | None:intergenic | 55.0% | |
| ! | CACCTGGTTAGCTCTCCTCT+TGG | - | chr1.1:74002582-74002601 | None:intergenic | 55.0% |
| GACCCTCGTGTCTCGTACTC+AGG | + | chr1.1:74001364-74001383 | MS.gene95803:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 74001132 | 74003574 | 74001132 | ID=MS.gene95803 |
| chr1.1 | mRNA | 74001132 | 74003574 | 74001132 | ID=MS.gene95803.t1;Parent=MS.gene95803 |
| chr1.1 | exon | 74001132 | 74001190 | 74001132 | ID=MS.gene95803.t1.exon1;Parent=MS.gene95803.t1 |
| chr1.1 | CDS | 74001132 | 74001190 | 74001132 | ID=cds.MS.gene95803.t1;Parent=MS.gene95803.t1 |
| chr1.1 | exon | 74001289 | 74001394 | 74001289 | ID=MS.gene95803.t1.exon2;Parent=MS.gene95803.t1 |
| chr1.1 | CDS | 74001289 | 74001394 | 74001289 | ID=cds.MS.gene95803.t1;Parent=MS.gene95803.t1 |
| chr1.1 | exon | 74002214 | 74002351 | 74002214 | ID=MS.gene95803.t1.exon3;Parent=MS.gene95803.t1 |
| chr1.1 | CDS | 74002214 | 74002351 | 74002214 | ID=cds.MS.gene95803.t1;Parent=MS.gene95803.t1 |
| chr1.1 | exon | 74002455 | 74002640 | 74002455 | ID=MS.gene95803.t1.exon4;Parent=MS.gene95803.t1 |
| chr1.1 | CDS | 74002455 | 74002640 | 74002455 | ID=cds.MS.gene95803.t1;Parent=MS.gene95803.t1 |
| chr1.1 | exon | 74002863 | 74003063 | 74002863 | ID=MS.gene95803.t1.exon5;Parent=MS.gene95803.t1 |
| chr1.1 | CDS | 74002863 | 74003063 | 74002863 | ID=cds.MS.gene95803.t1;Parent=MS.gene95803.t1 |
| chr1.1 | exon | 74003479 | 74003574 | 74003479 | ID=MS.gene95803.t1.exon6;Parent=MS.gene95803.t1 |
| chr1.1 | CDS | 74003479 | 74003574 | 74003479 | ID=cds.MS.gene95803.t1;Parent=MS.gene95803.t1 |
| Gene Sequence |
| Protein sequence |
