AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene071364

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene071364.t1 MTR_1g103100 97.701 261 6 0 1 261 1 261 0.0 530
MS.gene071364.t1 MTR_3g012040 95.785 261 11 0 1 261 1 261 0.0 497
MS.gene071364.t1 MTR_5g006440 94.636 261 14 0 1 261 1 261 9.71e-179 492
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene071364.t1 AT3G04840 85.115 262 38 1 1 261 1 262 1.68e-163 453
MS.gene071364.t1 AT4G34670 85.496 262 37 1 1 261 1 262 4.36e-163 452

Find 78 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCAAACTTGGGAGCTTTA+AGG 0.168578 2.1:+34139872 None:intergenic
AATATCATACCAATCCTTCT+TGG 0.295389 2.1:+34141870 None:intergenic
ATTTGGTCCTTGTAGGTTCA+TGG 0.297913 2.1:-34139444 MS.gene071364:intron
GAAGGATTGGTATGATATTA+AGG 0.312711 2.1:-34141866 MS.gene071364:CDS
CTGACTAGATTGTGCATAAC+AGG 0.339955 2.1:+34140288 None:intergenic
AAAGCTCCCAAGTTTGATCT+TGG 0.357514 2.1:-34139868 MS.gene071364:CDS
TAAGAACAAGCGGATCTCTA+AGG 0.365175 2.1:-34142023 MS.gene071364:CDS
GTTTGATCTTGGAAAATTGA+TGG 0.369245 2.1:-34139857 MS.gene071364:CDS
AAATTCATTCCCGAGATGAT+TGG 0.381702 2.1:-34139964 MS.gene071364:CDS
GGGACGAAGACCATGCATTC+AGG 0.393353 2.1:-34140615 MS.gene071364:CDS
ATCCTGTGATTTGAAGGAAT+TGG 0.402781 2.1:-34139992 MS.gene071364:CDS
GACCCTCGTGTCTCGTACTC+AGG 0.406163 2.1:-34141809 MS.gene071364:CDS
TACCAATCCTTCTTGGCAAA+TGG 0.412105 2.1:+34141877 None:intergenic
TAGAGTGTTTGAGGTTTCAT+TGG 0.413434 2.1:-34140650 MS.gene071364:CDS
GTTTCATTGGCTGATCTTCA+AGG 0.434675 2.1:-34140637 MS.gene071364:CDS
TGCTGATCCATTTGCCAAGA+AGG 0.436339 2.1:-34141884 MS.gene071364:CDS
AATTCATTCCCGAGATGATT+GGG 0.437177 2.1:-34139963 MS.gene071364:CDS
AGCATCATCCTGTGATTTGA+AGG 0.439297 2.1:-34139998 MS.gene071364:CDS
TACCAAGAGGAGAGCTAACC+AGG 0.440122 2.1:-34140320 MS.gene071364:CDS
TCCGTCACCATTTCATCAGC+AGG 0.444686 2.1:+34139384 None:intergenic
ACTCAAGCATAGAGTGTTTG+AGG 0.454600 2.1:-34140659 MS.gene071364:CDS
ACCATGCATTCAGGAAGATT+AGG 0.462005 2.1:-34140606 MS.gene071364:CDS
ATCCATTTGCCAAGAAGGAT+TGG 0.465718 2.1:-34141879 MS.gene071364:CDS
ATCTCCTTCCCAATCATCTC+GGG 0.483111 2.1:+34139955 None:intergenic
GAGGAACCTACTGAAATTGT+TGG 0.484047 2.1:-34139363 MS.gene071364:CDS
TGTTCAGATCCGTAGGAAGA+TGG 0.490433 2.1:-34140040 MS.gene071364:intron
CACCTGGTTAGCTCTCCTCT+TGG 0.502596 2.1:+34140318 None:intergenic
AACTGACAAACTGAGGTCAT+TGG 0.506332 2.1:-34140428 MS.gene071364:CDS
TGAGGTCATTGGTGCGTAAG+TGG 0.507827 2.1:-34140417 MS.gene071364:CDS
CGGATCTCTAAGGGGAAGAA+AGG 0.516719 2.1:-34142013 MS.gene071364:CDS
AAGAACAAGCGGATCTCTAA+GGG 0.521243 2.1:-34142022 MS.gene071364:CDS
CTTGTTCTTACCAACGGCCA+TGG 0.523346 2.1:+34142036 None:intergenic
ACCTAATCTTCCTGAATGCA+TGG 0.523822 2.1:+34140605 None:intergenic
TTTCATTGGCTGATCTTCAA+GGG 0.523908 2.1:-34140636 MS.gene071364:CDS
TCATCTCGGGAATGAATTTG+CGG 0.528925 2.1:+34139968 None:intergenic
AGAGAGGCCTGCTGATGAAA+TGG 0.532099 2.1:-34139391 MS.gene071364:CDS
TCTTGCCGACATTCTTCACC+TGG 0.534041 2.1:+34141830 None:intergenic
AATCTCCTTCCCAATCATCT+CGG 0.535678 2.1:+34139954 None:intergenic
TTGAGAGCTGAAGATGTTCA+AGG 0.537527 2.1:-34140583 MS.gene071364:CDS
CGGATGAACACATTCTGCAA+GGG 0.539130 2.1:+34139907 None:intergenic
TCAAATCACAGGATGATGCT+TGG 0.544201 2.1:+34140001 None:intergenic
CATAACAGGTCCTCTTCACC+TGG 0.545447 2.1:+34140302 None:intergenic
GGAGAGCTAACCAGGTGAAG+AGG 0.557404 2.1:-34140312 MS.gene071364:CDS
GAATGACAGATTGCTTCAGA+TGG 0.560187 2.1:-34140682 MS.gene071364:intron
CTCTGAGGATGTTGGCACAA+AGG 0.562498 2.1:-34139415 MS.gene071364:CDS
CTTTATTTGTTCAGATCCGT+AGG 0.563835 2.1:-34140047 MS.gene071364:intron
GATCCGCTTGTTCTTACCAA+CGG 0.569816 2.1:+34142030 None:intergenic
GACCAATTCCTTCAAATCAC+AGG 0.574407 2.1:+34139990 None:intergenic
TCGGATGAACACATTCTGCA+AGG 0.575354 2.1:+34139906 None:intergenic
ACAATCTAGTCAGATTAGAC+AGG 0.580594 2.1:-34140278 MS.gene071364:intron
CAAGCTCCAACAATTTCAGT+AGG 0.582102 2.1:+34139357 None:intergenic
GGAGATTACTCTGAGGATGT+TGG 0.587473 2.1:-34139423 MS.gene071364:CDS
TTCTTCACCTGGAAAACTGA+AGG 0.588083 2.1:+34141841 None:intergenic
TGATCTCAACCATCTTCCTA+CGG 0.590794 2.1:+34140031 None:intergenic
TTCATTGGCTGATCTTCAAG+GGG 0.595752 2.1:-34140635 MS.gene071364:CDS
CAGTAGTCTTGACATCCACA+TGG 0.596992 2.1:+34140377 None:intergenic
ACTCTGCAAACCATGGCCGT+TGG 0.603780 2.1:-34142046 None:intergenic
CATTCCCGAGATGATTGGGA+AGG 0.605231 2.1:-34139959 MS.gene071364:CDS
TGATCTTGGAAAATTGATGG+AGG 0.612140 2.1:-34139854 MS.gene071364:intron
TGAGAGCTGAAGATGTTCAA+GGG 0.612312 2.1:-34140582 MS.gene071364:CDS
ACCCTCGTGTCTCGTACTCA+GGG 0.615233 2.1:-34141808 MS.gene071364:CDS
ATCTCTAAGGGGAAGAAAGG+TGG 0.621403 2.1:-34142010 MS.gene071364:CDS
AACTCTTGTTGAAGCCCATG+TGG 0.622205 2.1:-34140392 MS.gene071364:CDS
GTCTCGTACTCAGGGTACCA+AGG 0.623684 2.1:-34141800 MS.gene071364:intron
TGGCCGTTGGTAAGAACAAG+CGG 0.624911 2.1:-34142033 MS.gene071364:CDS
GCCTGCTGATGAAATGGTGA+CGG 0.629382 2.1:-34139385 MS.gene071364:CDS
GGATGAACACATTCTGCAAG+GGG 0.631103 2.1:+34139908 None:intergenic
CAAGGGGTAAATACTAGACG+TGG 0.633754 2.1:+34139924 None:intergenic
CTACTGATAATTACACATTG+AGG 0.636083 2.1:-34140360 MS.gene071364:CDS
TTTGCATTGGCTTTACCAAG+AGG 0.642280 2.1:-34140333 MS.gene071364:CDS
TACCCTGAGTACGAGACACG+AGG 0.648373 2.1:+34141806 None:intergenic
ATGTTGGCACAAAGGTAGAG+AGG 0.654238 2.1:-34139407 MS.gene071364:CDS
ATTTCACAACTGACAAACTG+AGG 0.681977 2.1:-34140435 MS.gene071364:CDS
TGCTGATGAAATGGTGACGG+AGG 0.686062 2.1:-34139382 MS.gene071364:CDS
ACCCTGAGTACGAGACACGA+GGG 0.700568 2.1:+34141807 None:intergenic
AGTAGTCTTGACATCCACAT+GGG 0.706350 2.1:+34140378 None:intergenic
AGAACAAGCGGATCTCTAAG+GGG 0.721950 2.1:-34142021 MS.gene071364:CDS
GGTTCATGGAGATTACTCTG+AGG 0.741731 2.1:-34139430 MS.gene071364:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATATTATGAAAATAAATAT+TGG + chr2.1:34141605-34141624 None:intergenic 10.0%
!!! TTAGTATAAAAATTGTTTTA+TGG + chr2.1:34140174-34140193 None:intergenic 10.0%
!!! TTTTTTTTTTTTATTTACAG+GGG - chr2.1:34140928-34140947 MS.gene071364:intron 10.0%
!! GTAAAAAATGAAAATTTGAA+TGG + chr2.1:34139443-34139462 None:intergenic 15.0%
!!! GTTTTTTGTTTTTTGTAATT+TGG - chr2.1:34139632-34139651 MS.gene071364:intron 15.0%
!! AAAAAAATGTTGTCAAATAG+CGG + chr2.1:34140137-34140156 None:intergenic 20.0%
!! ATATATAAAGAAGAAATCAC+TGG - chr2.1:34141255-34141274 MS.gene071364:intron 20.0%
!! ATATTCAATGAAAGTAAGAT+AGG + chr2.1:34139701-34139720 None:intergenic 20.0%
!! CTTAATGCTTATTTAGAAAA+TGG - chr2.1:34140678-34140697 MS.gene071364:intron 20.0%
!! GATACACTAATATATAAATC+TGG + chr2.1:34141179-34141198 None:intergenic 20.0%
!!! AAAATCTTTTGACAAATTTC+TGG - chr2.1:34140832-34140851 MS.gene071364:intron 20.0%
!!! AAATCTTTTGACAAATTTCT+GGG - chr2.1:34140833-34140852 MS.gene071364:intron 20.0%
!!! ATTTGAATGGATTTTGAAAA+AGG + chr2.1:34139430-34139449 None:intergenic 20.0%
!!! TCTTGTCTTTTAAATAATGT+TGG + chr2.1:34140376-34140395 None:intergenic 20.0%
!!! TTTGAATGGATTTTGAAAAA+GGG + chr2.1:34139429-34139448 None:intergenic 20.0%
! AAAAAATGTTGTCAAATAGC+GGG + chr2.1:34140136-34140155 None:intergenic 25.0%
! AAAAACAAAAAACATGACAG+AGG + chr2.1:34139625-34139644 None:intergenic 25.0%
! AAACATAAGTAACTAAGTGA+CGG + chr2.1:34139948-34139967 None:intergenic 25.0%
! AAACCATTATAGAAAATGCA+AGG + chr2.1:34139472-34139491 None:intergenic 25.0%
! AACAGCATTTCATAAAAGAA+AGG + chr2.1:34141235-34141254 None:intergenic 25.0%
! AATAATCTGAAGGTTGTTTA+TGG + chr2.1:34141744-34141763 None:intergenic 25.0%
! ACAACATTATGACAAATAGA+TGG + chr2.1:34140876-34140895 None:intergenic 25.0%
! ACTTATAACCATCTAAAAAG+TGG - chr2.1:34141902-34141921 MS.gene071364:intron 25.0%
! ACTTTCATTGAATATCTATC+TGG - chr2.1:34139706-34139725 MS.gene071364:intron 25.0%
! ATATATTAGTGTATCCAACA+CGG - chr2.1:34141184-34141203 MS.gene071364:intron 25.0%
! ATTAAGCTATCTAAACAATC+AGG + chr2.1:34139738-34139757 None:intergenic 25.0%
! GAGAATAAAAATGAAGACAT+GGG + chr2.1:34140479-34140498 None:intergenic 25.0%
! GTTACTTATGTTTGTAGATA+CGG - chr2.1:34139955-34139974 MS.gene071364:CDS 25.0%
! TATCACCTGAATAAAAACTT+TGG - chr2.1:34141621-34141640 MS.gene071364:intron 25.0%
! TTAAGCTATCTAAACAATCA+GGG + chr2.1:34139737-34139756 None:intergenic 25.0%
! TTATTTCCATAATAGCCTAT+AGG + chr2.1:34139870-34139889 None:intergenic 25.0%
! TTGAACTTGTAATAATCTGA+AGG + chr2.1:34141754-34141773 None:intergenic 25.0%
!! AAAAACTTTGGTTGTTACTT+TGG - chr2.1:34141633-34141652 MS.gene071364:intron 25.0%
!! AAATATGTCTTAGTCTTTCA+TGG - chr2.1:34140620-34140639 MS.gene071364:CDS 25.0%
!! AACAACCAAAGTTTTTATTC+AGG + chr2.1:34141629-34141648 None:intergenic 25.0%
!! AAGCTAAAAGTTTTTCCTAT+AGG - chr2.1:34139852-34139871 MS.gene071364:intron 25.0%
!! AATATGTCTTAGTCTTTCAT+GGG - chr2.1:34140621-34140640 MS.gene071364:CDS 25.0%
!! AATTTTCCAAGATCAAACTT+GGG + chr2.1:34141531-34141550 None:intergenic 25.0%
!! TTATACTAAAAAGCATATCG+TGG - chr2.1:34140185-34140204 MS.gene071364:intron 25.0%
!! TTTCCTTGCATTTTCTATAA+TGG - chr2.1:34139466-34139485 MS.gene071364:intron 25.0%
!! TTTGGAAAGTTTGAAGTAAT+TGG + chr2.1:34141702-34141721 None:intergenic 25.0%
!! TTTGTCATAATGTTGTTTGT+TGG - chr2.1:34140880-34140899 MS.gene071364:intron 25.0%
!!! GGTTTGATTTTGTTTCTATT+TGG - chr2.1:34141929-34141948 MS.gene071364:intron 25.0%
!!! TGATTGTTGTTTTATAAGTG+TGG + chr2.1:34140304-34140323 None:intergenic 25.0%
AATATCATACCAATCCTTCT+TGG + chr2.1:34139523-34139542 None:intergenic 30.0%
CGAGAATAAAAATGAAGACA+TGG + chr2.1:34140480-34140499 None:intergenic 30.0%
CTACTGATAATTACACATTG+AGG - chr2.1:34141030-34141049 MS.gene071364:intron 30.0%
GTTGCTGAAATTTGATCAAT+TGG - chr2.1:34140644-34140663 MS.gene071364:CDS 30.0%
GTTTGATCTTGGAAAATTGA+TGG - chr2.1:34141533-34141552 MS.gene071364:intron 30.0%
TAAGCTGAAAAAACATCTCA+TGG - chr2.1:34139887-34139906 MS.gene071364:CDS 30.0%
! ATATGTCTTAGTCTTTCATG+GGG - chr2.1:34140622-34140641 MS.gene071364:CDS 30.0%
! CAATTTTCCAAGATCAAACT+TGG + chr2.1:34141532-34141551 None:intergenic 30.0%
! GAAGGATTGGTATGATATTA+AGG - chr2.1:34139524-34139543 MS.gene071364:intron 30.0%
! GTTTTCACACAAGCATTTAT+TGG + chr2.1:34141795-34141814 None:intergenic 30.0%
! GTTTTTCCTATAGGCTATTA+TGG - chr2.1:34139861-34139880 MS.gene071364:CDS 30.0%
!! AATGGATTTTGAAAAAGGGT+TGG + chr2.1:34139425-34139444 None:intergenic 30.0%
!! CTTTAAGGATCTTCACTTTT+CGG + chr2.1:34141506-34141525 None:intergenic 30.0%
!! GGTTTGATTTGTACATTGTT+AGG - chr2.1:34139653-34139672 MS.gene071364:intron 30.0%
AAATTCATTCCCGAGATGAT+TGG - chr2.1:34141426-34141445 MS.gene071364:intron 35.0%
AACCATCTAAAAAGTGGCTT+TGG - chr2.1:34141908-34141927 MS.gene071364:intron 35.0%
AACTTCCATTCTCATGTAAG+TGG + chr2.1:34140526-34140545 None:intergenic 35.0%
AATTCATTCCCGAGATGATT+GGG - chr2.1:34141427-34141446 MS.gene071364:intron 35.0%
ACAATCTAGTCAGATTAGAC+AGG - chr2.1:34141112-34141131 MS.gene071364:intron 35.0%
AGATAGATATTTCGAGCAGA+GGG + chr2.1:34140262-34140281 None:intergenic 35.0%
ATCCTGTGATTTGAAGGAAT+TGG - chr2.1:34141398-34141417 MS.gene071364:intron 35.0%
ATTCTCATGTAAGTGGAAAG+AGG + chr2.1:34140519-34140538 None:intergenic 35.0%
ATTTCACAACTGACAAACTG+AGG - chr2.1:34140955-34140974 MS.gene071364:intron 35.0%
CTACGGATCTGAACAAATAA+AGG + chr2.1:34141345-34141364 None:intergenic 35.0%
CTTTCCAAAAGCTCTCTATT+CGG - chr2.1:34141713-34141732 MS.gene071364:intron 35.0%
GACAAGAAAAAAGACTGAAC+TGG - chr2.1:34140389-34140408 MS.gene071364:CDS 35.0%
GTAGATCACATATCGCTATA+GGG + chr2.1:34140240-34140259 None:intergenic 35.0%
TAGATAGATATTTCGAGCAG+AGG + chr2.1:34140263-34140282 None:intergenic 35.0%
TCAAATATGCCAATCCAAAC+AGG - chr2.1:34139978-34139997 MS.gene071364:CDS 35.0%
TCATGCTAAAAGAGAACAGA+AGG + chr2.1:34141859-34141878 None:intergenic 35.0%
TCCTTGTAACCAAAACCAAT+GGG + chr2.1:34140595-34140614 None:intergenic 35.0%
TCTTTCCACTTACATGAGAA+TGG - chr2.1:34140518-34140537 MS.gene071364:intron 35.0%
TGAACTGGCATTATCATGAT+GGG - chr2.1:34140404-34140423 MS.gene071364:CDS 35.0%
TGATCTTGGAAAATTGATGG+AGG - chr2.1:34141536-34141555 MS.gene071364:intron 35.0%
TTCCTTGTAACCAAAACCAA+TGG + chr2.1:34140596-34140615 None:intergenic 35.0%
! ACATTGAGGATGTTTTGCAT+TGG - chr2.1:34141044-34141063 MS.gene071364:intron 35.0%
! CTTTATTTGTTCAGATCCGT+AGG - chr2.1:34141343-34141362 MS.gene071364:intron 35.0%
! TAGAGTGTTTGAGGTTTCAT+TGG - chr2.1:34140740-34140759 MS.gene071364:intron 35.0%
! TCGAAATATCTATCTAGCTC+TGG - chr2.1:34140267-34140286 MS.gene071364:intron 35.0%
! TGTTTCTATTTGGTCCTTGT+AGG - chr2.1:34141939-34141958 MS.gene071364:intron 35.0%
! TTTCATTGGCTGATCTTCAA+GGG - chr2.1:34140754-34140773 MS.gene071364:intron 35.0%
!! AATAATGTTGGTCTTGCTTG+TGG + chr2.1:34140364-34140383 None:intergenic 35.0%
!! ATCCAACACATGTTTTAGGT+AGG - chr2.1:34141208-34141227 MS.gene071364:intron 35.0%
!! CGAAATATCTATCTAGCTCT+GGG - chr2.1:34140268-34140287 MS.gene071364:intron 35.0%
!! TTTCTAAAGTATCGACTCCA+GGG - chr2.1:34140442-34140461 MS.gene071364:CDS 35.0%
!!! AAATCACTGGTTTTGAACCT+AGG - chr2.1:34141268-34141287 MS.gene071364:intron 35.0%
!!! AACCAAAGCCACTTTTTAGA+TGG + chr2.1:34141913-34141932 None:intergenic 35.0%
!!! GCTATTTAACCCATTGGTTT+TGG - chr2.1:34140583-34140602 MS.gene071364:CDS 35.0%
!!! TTTTCTAAAGTATCGACTCC+AGG - chr2.1:34140441-34140460 MS.gene071364:CDS 35.0%
AAAGCTCCCAAGTTTGATCT+TGG - chr2.1:34141522-34141541 MS.gene071364:intron 40.0%
AACTGACAAACTGAGGTCAT+TGG - chr2.1:34140962-34140981 MS.gene071364:intron 40.0%
AAGAACAAGCGGATCTCTAA+GGG - chr2.1:34139368-34139387 MS.gene071364:CDS 40.0%
AATCTCCTTCCCAATCATCT+CGG + chr2.1:34141439-34141458 None:intergenic 40.0%
ACCATGCATTCAGGAAGATT+AGG - chr2.1:34140784-34140803 MS.gene071364:intron 40.0%
ACCTAATCTTCCTGAATGCA+TGG + chr2.1:34140788-34140807 None:intergenic 40.0%
AGAAGACAAAGCATGATCCT+AGG + chr2.1:34141288-34141307 None:intergenic 40.0%
AGCATCATCCTGTGATTTGA+AGG - chr2.1:34141392-34141411 MS.gene071364:intron 40.0%
AGCTATCTAAACAATCAGGG+AGG + chr2.1:34139734-34139753 None:intergenic 40.0%
ATCCATTTGCCAAGAAGGAT+TGG - chr2.1:34139511-34139530 MS.gene071364:intron 40.0%
ATTTGGTCCTTGTAGGTTCA+TGG - chr2.1:34141946-34141965 MS.gene071364:intron 40.0%
CAAGCTCCAACAATTTCAGT+AGG + chr2.1:34142036-34142055 None:intergenic 40.0%
CTGAACTGGCATTATCATGA+TGG - chr2.1:34140403-34140422 MS.gene071364:CDS 40.0%
CTGACTAGATTGTGCATAAC+AGG + chr2.1:34141105-34141124 None:intergenic 40.0%
GAATGACAGATTGCTTCAGA+TGG - chr2.1:34140708-34140727 MS.gene071364:intron 40.0%
GACAGAGGAAAACAATACCT+TGG + chr2.1:34139610-34139629 None:intergenic 40.0%
GACCAATTCCTTCAAATCAC+AGG + chr2.1:34141403-34141422 None:intergenic 40.0%
GAGGAACCTACTGAAATTGT+TGG - chr2.1:34142027-34142046 MS.gene071364:CDS 40.0%
GATCAAACTTGGGAGCTTTA+AGG + chr2.1:34141521-34141540 None:intergenic 40.0%
GCTATCTAAACAATCAGGGA+GGG + chr2.1:34139733-34139752 None:intergenic 40.0%
GGTAGATCACATATCGCTAT+AGG + chr2.1:34140241-34140260 None:intergenic 40.0%
GTAATCTCCATGAACCTACA+AGG + chr2.1:34141956-34141975 None:intergenic 40.0%
GTCCTACCTAAAACATGTGT+TGG + chr2.1:34141213-34141232 None:intergenic 40.0%
TAAGAACAAGCGGATCTCTA+AGG - chr2.1:34139367-34139386 MS.gene071364:CDS 40.0%
TACCAATCCTTCTTGGCAAA+TGG + chr2.1:34139516-34139535 None:intergenic 40.0%
TCAAATCACAGGATGATGCT+TGG + chr2.1:34141392-34141411 None:intergenic 40.0%
TCATCTCGGGAATGAATTTG+CGG + chr2.1:34141425-34141444 None:intergenic 40.0%
TGAGAGCTGAAGATGTTCAA+GGG - chr2.1:34140808-34140827 MS.gene071364:intron 40.0%
TGATCTCAACCATCTTCCTA+CGG + chr2.1:34141362-34141381 None:intergenic 40.0%
TTCTTCACCTGGAAAACTGA+AGG + chr2.1:34139552-34139571 None:intergenic 40.0%
TTGAGAGCTGAAGATGTTCA+AGG - chr2.1:34140807-34140826 MS.gene071364:intron 40.0%
! ACTCAAGCATAGAGTGTTTG+AGG - chr2.1:34140731-34140750 MS.gene071364:intron 40.0%
! AGTAGTCTTGACATCCACAT+GGG + chr2.1:34141015-34141034 None:intergenic 40.0%
! CGGTATCCAACACATGTTTT+AGG - chr2.1:34141204-34141223 MS.gene071364:intron 40.0%
! CTAGCTGCTATTTAACCCAT+TGG - chr2.1:34140577-34140596 MS.gene071364:CDS 40.0%
! GAAACCGAATAGAGAGCTTT+TGG + chr2.1:34141720-34141739 None:intergenic 40.0%
! GTTTCATTGGCTGATCTTCA+AGG - chr2.1:34140753-34140772 MS.gene071364:intron 40.0%
! GTTTTCCAGGTGAAGAATGT+CGG - chr2.1:34139555-34139574 MS.gene071364:intron 40.0%
! TTCATTGGCTGATCTTCAAG+GGG - chr2.1:34140755-34140774 MS.gene071364:intron 40.0%
!! CAATGGGTTAAATAGCAGCT+AGG + chr2.1:34140579-34140598 None:intergenic 40.0%
!! TTCTAAAGTATCGACTCCAG+GGG - chr2.1:34140443-34140462 MS.gene071364:CDS 40.0%
!! TTGGTTGTTACTTTGGTCAC+TGG - chr2.1:34141640-34141659 MS.gene071364:intron 40.0%
!! TTGTCAAATAGCGGGTAAAG+TGG + chr2.1:34140128-34140147 None:intergenic 40.0%
!! TTTGCATTGGCTTTACCAAG+AGG - chr2.1:34141057-34141076 MS.gene071364:intron 40.0%
!!! ACCCATTGGTTTTGGTTACA+AGG - chr2.1:34140591-34140610 MS.gene071364:CDS 40.0%
AACTCTTGTTGAAGCCCATG+TGG - chr2.1:34140998-34141017 MS.gene071364:intron 45.0%
ACATGTGTTGGATACCGTGT+TGG + chr2.1:34141201-34141220 None:intergenic 45.0%
AGAACAAGCGGATCTCTAAG+GGG - chr2.1:34139369-34139388 MS.gene071364:CDS 45.0%
ATCTCCTTCCCAATCATCTC+GGG + chr2.1:34141438-34141457 None:intergenic 45.0%
ATGTTGGCACAAAGGTAGAG+AGG - chr2.1:34141983-34142002 MS.gene071364:intron 45.0%
CAAGGGGTAAATACTAGACG+TGG + chr2.1:34141469-34141488 None:intergenic 45.0%
CACGAAGTATACTCAGTCCA+AGG + chr2.1:34140005-34140024 None:intergenic 45.0%
CGGATGAACACATTCTGCAA+GGG + chr2.1:34141486-34141505 None:intergenic 45.0%
GATCCGCTTGTTCTTACCAA+CGG + chr2.1:34139363-34139382 None:intergenic 45.0%
GGATGAACACATTCTGCAAG+GGG + chr2.1:34141485-34141504 None:intergenic 45.0%
GGTTCATGGAGATTACTCTG+AGG - chr2.1:34141960-34141979 MS.gene071364:intron 45.0%
TCGGATGAACACATTCTGCA+AGG + chr2.1:34141487-34141506 None:intergenic 45.0%
TCTTGCAGTGCAGAAAACAG+CGG - chr2.1:34140066-34140085 MS.gene071364:intron 45.0%
TGCTGATCCATTTGCCAAGA+AGG - chr2.1:34139506-34139525 MS.gene071364:intron 45.0%
TGTTCAGATCCGTAGGAAGA+TGG - chr2.1:34141350-34141369 MS.gene071364:intron 45.0%
! ATCTCTAAGGGGAAGAAAGG+TGG - chr2.1:34139380-34139399 MS.gene071364:CDS 45.0%
! CAGTAGTCTTGACATCCACA+TGG + chr2.1:34141016-34141035 None:intergenic 45.0%
! GGAGATTACTCTGAGGATGT+TGG - chr2.1:34141967-34141986 MS.gene071364:intron 45.0%
! TAAGGCTCCTTCAGTTTTCC+AGG - chr2.1:34139542-34139561 MS.gene071364:intron 45.0%
!! ATATTATGAAAATAAATATT+GGG + chr2.1:34141604-34141623 None:intergenic 5.0%
!!! AACAAAATTAAAATTTTAAA+AGG + chr2.1:34141834-34141853 None:intergenic 5.0%
!!! ATTTTTTTTTTTTTATTTAC+AGG - chr2.1:34140926-34140945 MS.gene071364:intron 5.0%
!!! TTTTTTTTTTTTTATTTACA+GGG - chr2.1:34140927-34140946 MS.gene071364:intron 5.0%
ACTCAGTCCAAGGACCTGTT+TGG + chr2.1:34139995-34140014 None:intergenic 50.0%
AGAGAGGCCTGCTGATGAAA+TGG - chr2.1:34141999-34142018 MS.gene071364:CDS 50.0%
CATAACAGGTCCTCTTCACC+TGG + chr2.1:34141091-34141110 None:intergenic 50.0%
CATTCCCGAGATGATTGGGA+AGG - chr2.1:34141431-34141450 MS.gene071364:intron 50.0%
CTTGCAGTGCAGAAAACAGC+GGG - chr2.1:34140067-34140086 MS.gene071364:intron 50.0%
GCCTGCTGATGAAATGGTGA+CGG - chr2.1:34142005-34142024 MS.gene071364:CDS 50.0%
GTCCAAGGACCTGTTTGGAT+TGG + chr2.1:34139990-34140009 None:intergenic 50.0%
TACCAAGAGGAGAGCTAACC+AGG - chr2.1:34141070-34141089 MS.gene071364:intron 50.0%
TCCGTCACCATTTCATCAGC+AGG + chr2.1:34142009-34142028 None:intergenic 50.0%
TCTTGCCGACATTCTTCACC+TGG + chr2.1:34139563-34139582 None:intergenic 50.0%
TGAGGTCATTGGTGCGTAAG+TGG - chr2.1:34140973-34140992 MS.gene071364:intron 50.0%
TGCCAATCCAAACAGGTCCT+TGG - chr2.1:34139985-34140004 MS.gene071364:CDS 50.0%
! CGGATCTCTAAGGGGAAGAA+AGG - chr2.1:34139377-34139396 MS.gene071364:CDS 50.0%
! CTCTGAGGATGTTGGCACAA+AGG - chr2.1:34141975-34141994 MS.gene071364:intron 50.0%
! TGGCCGTTGGTAAGAACAAG+CGG - chr2.1:34139357-34139376 MS.gene071364:CDS 50.0%
!! ATGTTGGTCTTGCTTGTGGC+AGG + chr2.1:34140360-34140379 None:intergenic 50.0%
!! TGCTGATGAAATGGTGACGG+AGG - chr2.1:34142008-34142027 MS.gene071364:CDS 50.0%
!! TGTTGGTCTTGCTTGTGGCA+GGG + chr2.1:34140359-34140378 None:intergenic 50.0%
ACCCTCGTGTCTCGTACTCA+GGG - chr2.1:34139582-34139601 MS.gene071364:intron 55.0%
ACCCTGAGTACGAGACACGA+GGG + chr2.1:34139586-34139605 None:intergenic 55.0%
CATGGGAATGTCATGTCCCC+TGG + chr2.1:34140462-34140481 None:intergenic 55.0%
GGAGAGCTAACCAGGTGAAG+AGG - chr2.1:34141078-34141097 MS.gene071364:intron 55.0%
GGGACGAAGACCATGCATTC+AGG - chr2.1:34140775-34140794 MS.gene071364:intron 55.0%
TACCCTGAGTACGAGACACG+AGG + chr2.1:34139587-34139606 None:intergenic 55.0%
! CACCTGGTTAGCTCTCCTCT+TGG + chr2.1:34141075-34141094 None:intergenic 55.0%
! GTCTCGTACTCAGGGTACCA+AGG - chr2.1:34139590-34139609 MS.gene071364:intron 55.0%
CTTGTGGCAGGGCAGAAGTG+GGG + chr2.1:34140348-34140367 None:intergenic 60.0%
GACCCTCGTGTCTCGTACTC+AGG - chr2.1:34139581-34139600 MS.gene071364:intron 60.0%
GCTTGTGGCAGGGCAGAAGT+GGG + chr2.1:34140349-34140368 None:intergenic 60.0%
TGCTTGTGGCAGGGCAGAAG+TGG + chr2.1:34140350-34140369 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 34139356 34142056 34139356 ID=MS.gene071364
chr2.1 mRNA 34139356 34142056 34139356 ID=MS.gene071364.t1;Parent=MS.gene071364
chr2.1 exon 34141998 34142056 34141998 ID=MS.gene071364.t1.exon1;Parent=MS.gene071364.t1
chr2.1 CDS 34141998 34142056 34141998 ID=cds.MS.gene071364.t1;Parent=MS.gene071364.t1
chr2.1 exon 34141801 34141906 34141801 ID=MS.gene071364.t1.exon2;Parent=MS.gene071364.t1
chr2.1 CDS 34141801 34141906 34141801 ID=cds.MS.gene071364.t1;Parent=MS.gene071364.t1
chr2.1 exon 34140558 34140695 34140558 ID=MS.gene071364.t1.exon3;Parent=MS.gene071364.t1
chr2.1 CDS 34140558 34140695 34140558 ID=cds.MS.gene071364.t1;Parent=MS.gene071364.t1
chr2.1 exon 34140279 34140464 34140279 ID=MS.gene071364.t1.exon4;Parent=MS.gene071364.t1
chr2.1 CDS 34140279 34140464 34140279 ID=cds.MS.gene071364.t1;Parent=MS.gene071364.t1
chr2.1 exon 34139855 34140055 34139855 ID=MS.gene071364.t1.exon5;Parent=MS.gene071364.t1
chr2.1 CDS 34139855 34140055 34139855 ID=cds.MS.gene071364.t1;Parent=MS.gene071364.t1
chr2.1 exon 34139356 34139451 34139356 ID=MS.gene071364.t1.exon6;Parent=MS.gene071364.t1
chr2.1 CDS 34139356 34139451 34139356 ID=cds.MS.gene071364.t1;Parent=MS.gene071364.t1
Gene Sequence

>MS.gene071364

ATGGCCGTTGGTAAGAACAAGCGGATCTCTAAGGGGAAGAAAGGTGGCAAGAAGAAAGCGTTAGTACCAACCCTTTTTCAAAATCCATTCAAATTTTCATTTTTTACAATTTTCCTTGCATTTTCTATAATGGTTTCTATGAACTTGCAGTGCTGATCCATTTGCCAAGAAGGATTGGTATGATATTAAGGCTCCTTCAGTTTTCCAGGTGAAGAATGTCGGCAAGACCCTCGTGTCTCGTACTCAGGGTACCAAGGTATTGTTTTCCTCTGTCATGTTTTTTGTTTTTTGTAATTTGGTTTGATTTGTACATTGTTAGGTTATTGTACGAATTTATATGATCCTATCTTACTTTCATTGAATATCTATCTGGACCCTCCCTGATTGTTTAGATAGCTTAATTAAGAGCTTTTATATTTAAGTGTTGTTATATAAGTGTTTATGTATAAACTATTTTTATAACTAAAGATAGAATAAAGTCTAATTCTTTTCACATAAGCTAAAAGTTTTTCCTATAGGCTATTATGGAAATAAGCTGAAAAAACATCTCATGGATATGTCATAAGCTTTTTCGTTAAGCTCTTTCAAACCGTCACTTAGTTACTTATGTTTGTAGATACGGTCAAATATGCCAATCCAAACAGGTCCTTGGACTGAGTATACTTCGTGACATTATTATGTTCGTGTTGTGTTTTTGTCAGTCTTCTCAATCTTGCAGTGCAGAAAACAGCGGGTTGTTAAAATTCTGCTACACAATAGTGCTATAGTGCCACTTTACCCGCTATTTGACAACATTTTTTTTGCTAAATAGTGTACCATAAAACAATTTTTATACTAAAAAGCATATCGTGGAACAATAGTGATTTGTATAAATTCAGCTACCCTATAGCGATATGTGATCTACCCTCTGCTCGAAATATCTATCTAGCTCTGGGAGAGATGCGTCCACACTTATAAAACAACAATCATATCTTAAACTATCAGCTTGACCCCACTTCTGCCCTGCCACAAGCAAGACCAACATTATTTAAAAGACAAGAAAAAAGACTGAACTGGCATTATCATGATGGGCTCAAACTTAAATATTTTCTAAAGTATCGACTCCAGGGGACATGACATTCCCATGTCTTCATTTTTATTCTCGTGATTAGAGTGAGTGTCCTCTTTCCACTTACATGAGAATGGAAGTTTTAATGTTACATTGTAACATATATTCATTTCCTAGCTGCTATTTAACCCATTGGTTTTGGTTACAAGGAATATCAAATATGTCTTAGTCTTTCATGGGGTTGCTGAAATTTGATCAATTGGAGTTTTGCACGCTTAATGCTTATTTAGAAAATGGTTGTTTTGAATGACAGATTGCTTCAGATGGACTCAAGCATAGAGTGTTTGAGGTTTCATTGGCTGATCTTCAAGGGGACGAAGACCATGCATTCAGGAAGATTAGGTTGAGAGCTGAAGATGTTCAAGGGAAAAATCTTTTGACAAATTTCTGGGTATGATAAGCTGCTGAACCATCTATTTGTCATAATGTTGTTTGTTGGTATTTTTTTTTAATTTGATTTTGATTTTTTTTTTTTTATTTACAGGGGATGAATTTCACAACTGACAAACTGAGGTCATTGGTGCGTAAGTGGCAAACTCTTGTTGAAGCCCATGTGGATGTCAAGACTACTGATAATTACACATTGAGGATGTTTTGCATTGGCTTTACCAAGAGGAGAGCTAACCAGGTGAAGAGGACCTGTTATGCACAATCTAGTCAGATTAGACAGGTAGATACATTGACGCTTTTCTTTTCAAATCATACTAGTTTTCCAGATTTATATATTAGTGTATCCAACACGGTATCCAACACATGTTTTAGGTAGGACCTTTCTTTTATGAAATGCTGTTATATATAAAGAAGAAATCACTGGTTTTGAACCTAGGATCATGCTTTGTCTTCTTCTAAGATATTTCTTATTAGTTACTAATGTTACACCTTTATTTGTTCAGATCCGTAGGAAGATGGTTGAGATCATGATCAACCAAGCATCATCCTGTGATTTGAAGGAATTGGTCCGCAAATTCATTCCCGAGATGATTGGGAAGGAGATTGAGAAAGCCACGTCTAGTATTTACCCCTTGCAGAATGTGTTCATCCGAAAAGTGAAGATCCTTAAAGCTCCCAAGTTTGATCTTGGAAAATTGATGGAGGTATTTTTTTGAAACAACTTTTTTATGTTTGTTCTCATTCACACCCAATATTTATTTTCATAATATCACCTGAATAAAAACTTTGGTTGTTACTTTGGTCACTGGTGTTATTTGCTTGACGAGATGAACTCTTTAATATAACCAATTACTTCAAACTTTCCAAAAGCTCTCTATTCGGTTTCTCCATAAACAACCTTCAGATTATTACAAGTTCAAAACTAAATACTTACTAATCCAATAAATGCTTGTGTGAAAACAAACTTAATCATGTTGCCTTTTAAAATTTTAATTTTGTTTTCCTTCTGTTCTCTTTTAGCATGAGTATGCAGTTGTCACGTGTGCACACTTATAACCATCTAAAAAGTGGCTTTGGTTTGATTTTGTTTCTATTTGGTCCTTGTAGGTTCATGGAGATTACTCTGAGGATGTTGGCACAAAGGTAGAGAGGCCTGCTGATGAAATGGTGACGGAGGAACCTACTGAAATTGTTGGAGCTTGA
Protein sequence

>MS.gene071364.t1

MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASDGLKHRVFEVSLADLQGDEDHAFRKIRLRAEDVQGKNLLTNFWGMNFTTDKLRSLVRKWQTLVEAHVDVKTTDNYTLRMFCIGFTKRRANQVKRTCYAQSSQIRQIRRKMVEIMINQASSCDLKELVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGTKVERPADEMVTEEPTEIVGA