AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene77163


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene77163.t1 MTR_1g103100 97.701 261 6 0 1 261 1 261 0.0 530
MS.gene77163.t1 MTR_3g012040 95.785 261 11 0 1 261 1 261 0.0 497
MS.gene77163.t1 MTR_5g006440 94.636 261 14 0 1 261 1 261 9.71e-179 492
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene77163.t1 AT3G04840 85.115 262 38 1 1 261 1 262 1.68e-163 453
MS.gene77163.t1 AT4G34670 85.496 262 37 1 1 261 1 262 4.36e-163 452

Find 78 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCAAACTTGGGAGCTTTA+AGG 0.168578 2.2:+27719587 None:intergenic
AATATCATACCAATCCTTCT+TGG 0.295389 2.2:+27721580 None:intergenic
ATTTGGTCCTTGTAGGTTCA+TGG 0.297913 2.2:-27718965 MS.gene77163:intron
GAAGGATTGGTATGATATTA+AGG 0.312711 2.2:-27721576 MS.gene77163:CDS
CTGACTAGATTGTGCATAAC+AGG 0.339955 2.2:+27720003 None:intergenic
AAAGCTCCCAAGTTTGATCT+TGG 0.357514 2.2:-27719583 MS.gene77163:CDS
TAAGAACAAGCGGATCTCTA+AGG 0.365175 2.2:-27721733 MS.gene77163:CDS
GTTTGATCTTGGAAAATTGA+TGG 0.369245 2.2:-27719572 MS.gene77163:CDS
AAATTCATTCCCGAGATGAT+TGG 0.381702 2.2:-27719679 MS.gene77163:CDS
GGGACGAAGACCATGCATTC+AGG 0.393353 2.2:-27720328 MS.gene77163:CDS
ATCCTGTGATTTGAAGGAAT+TGG 0.402781 2.2:-27719707 MS.gene77163:CDS
GACCCTCGTGTCTCGTACTC+AGG 0.406163 2.2:-27721519 MS.gene77163:CDS
TACCAATCCTTCTTGGCAAA+TGG 0.412105 2.2:+27721587 None:intergenic
TAGAGTGTTTGAGGTTTCAT+TGG 0.413434 2.2:-27720363 MS.gene77163:CDS
GTTTCATTGGCTGATCTTCA+AGG 0.434675 2.2:-27720350 MS.gene77163:CDS
TGCTGATCCATTTGCCAAGA+AGG 0.436339 2.2:-27721594 MS.gene77163:CDS
AATTCATTCCCGAGATGATT+GGG 0.437177 2.2:-27719678 MS.gene77163:CDS
AGCATCATCCTGTGATTTGA+AGG 0.439297 2.2:-27719713 MS.gene77163:CDS
TACCAAGAGGAGAGCTAACC+AGG 0.440122 2.2:-27720035 MS.gene77163:CDS
TCCGTCACCATTTCATCAGC+AGG 0.444686 2.2:+27718905 None:intergenic
ACTCAAGCATAGAGTGTTTG+AGG 0.454600 2.2:-27720372 MS.gene77163:CDS
ACCATGCATTCAGGAAGATT+AGG 0.462005 2.2:-27720319 MS.gene77163:CDS
ATCCATTTGCCAAGAAGGAT+TGG 0.465718 2.2:-27721589 MS.gene77163:CDS
ATCTCCTTCCCAATCATCTC+GGG 0.483111 2.2:+27719670 None:intergenic
GAGGAACCTACTGAAATTGT+TGG 0.484047 2.2:-27718884 MS.gene77163:CDS
TGTTCAGATCCGTAGGAAGA+TGG 0.490433 2.2:-27719755 MS.gene77163:intron
CACCTGGTTAGCTCTCCTCT+TGG 0.502596 2.2:+27720033 None:intergenic
AACTGACAAACTGAGGTCAT+TGG 0.506332 2.2:-27720143 MS.gene77163:CDS
TGAGGTCATTGGTGCGTAAG+TGG 0.507827 2.2:-27720132 MS.gene77163:CDS
CGGATCTCTAAGGGGAAGAA+AGG 0.516719 2.2:-27721723 MS.gene77163:CDS
AAGAACAAGCGGATCTCTAA+GGG 0.521243 2.2:-27721732 MS.gene77163:CDS
CTTGTTCTTACCAACGGCCA+TGG 0.523346 2.2:+27721746 None:intergenic
ACCTAATCTTCCTGAATGCA+TGG 0.523822 2.2:+27720318 None:intergenic
TTTCATTGGCTGATCTTCAA+GGG 0.523908 2.2:-27720349 MS.gene77163:CDS
TCATCTCGGGAATGAATTTG+CGG 0.528925 2.2:+27719683 None:intergenic
AGAGAGGCCTGCTGATGAAA+TGG 0.532099 2.2:-27718912 MS.gene77163:CDS
TCTTGCCGACATTCTTCACC+TGG 0.534041 2.2:+27721540 None:intergenic
AATCTCCTTCCCAATCATCT+CGG 0.535678 2.2:+27719669 None:intergenic
TTGAGAGCTGAAGATGTTCA+AGG 0.537527 2.2:-27720296 MS.gene77163:CDS
CGGATGAACACATTCTGCAA+GGG 0.539130 2.2:+27719622 None:intergenic
TCAAATCACAGGATGATGCT+TGG 0.544201 2.2:+27719716 None:intergenic
CATAACAGGTCCTCTTCACC+TGG 0.545447 2.2:+27720017 None:intergenic
GGAGAGCTAACCAGGTGAAG+AGG 0.557404 2.2:-27720027 MS.gene77163:CDS
GAATGACAGATTGCTTCAGA+TGG 0.560187 2.2:-27720395 MS.gene77163:intron
CTCTGAGGATGTTGGCACAA+AGG 0.562498 2.2:-27718936 MS.gene77163:CDS
CTTTATTTGTTCAGATCCGT+AGG 0.563835 2.2:-27719762 MS.gene77163:intron
GATCCGCTTGTTCTTACCAA+CGG 0.569816 2.2:+27721740 None:intergenic
GACCAATTCCTTCAAATCAC+AGG 0.574407 2.2:+27719705 None:intergenic
TCGGATGAACACATTCTGCA+AGG 0.575354 2.2:+27719621 None:intergenic
ACAATCTAGTCAGATTAGAC+AGG 0.580594 2.2:-27719993 MS.gene77163:intron
CAAGCTCCAACAATTTCAGT+AGG 0.582102 2.2:+27718878 None:intergenic
GGAGATTACTCTGAGGATGT+TGG 0.587473 2.2:-27718944 MS.gene77163:CDS
TTCTTCACCTGGAAAACTGA+AGG 0.588083 2.2:+27721551 None:intergenic
TGATCTCAACCATCTTCCTA+CGG 0.590794 2.2:+27719746 None:intergenic
TTCATTGGCTGATCTTCAAG+GGG 0.595752 2.2:-27720348 MS.gene77163:CDS
CAGTAGTCTTGACATCCACA+TGG 0.596992 2.2:+27720092 None:intergenic
ACTCTGCAAACCATGGCCGT+TGG 0.603780 2.2:-27721756 None:intergenic
CATTCCCGAGATGATTGGGA+AGG 0.605231 2.2:-27719674 MS.gene77163:CDS
TGATCTTGGAAAATTGATGG+AGG 0.612140 2.2:-27719569 MS.gene77163:intron
TGAGAGCTGAAGATGTTCAA+GGG 0.612312 2.2:-27720295 MS.gene77163:CDS
ACCCTCGTGTCTCGTACTCA+GGG 0.615233 2.2:-27721518 MS.gene77163:CDS
ATCTCTAAGGGGAAGAAAGG+TGG 0.621403 2.2:-27721720 MS.gene77163:CDS
AACTCTTGTTGAAGCCCATG+TGG 0.622205 2.2:-27720107 MS.gene77163:CDS
GTCTCGTACTCAGGGTACCA+AGG 0.623684 2.2:-27721510 MS.gene77163:intron
TGGCCGTTGGTAAGAACAAG+CGG 0.624911 2.2:-27721743 MS.gene77163:CDS
GCCTGCTGATGAAATGGTGA+CGG 0.629382 2.2:-27718906 MS.gene77163:CDS
GGATGAACACATTCTGCAAG+GGG 0.631103 2.2:+27719623 None:intergenic
CAAGGGGTAAATACTAGACG+TGG 0.633754 2.2:+27719639 None:intergenic
CTACTGATAATTACACATTG+AGG 0.636083 2.2:-27720075 MS.gene77163:CDS
TTTGCATTGGCTTTACCAAG+AGG 0.642280 2.2:-27720048 MS.gene77163:CDS
TACCCTGAGTACGAGACACG+AGG 0.648373 2.2:+27721516 None:intergenic
ATGTTGGCACAAAGGTAGAG+AGG 0.654238 2.2:-27718928 MS.gene77163:CDS
ATTTCACAACTGACAAACTG+AGG 0.681977 2.2:-27720150 MS.gene77163:CDS
TGCTGATGAAATGGTGACGG+AGG 0.686062 2.2:-27718903 MS.gene77163:CDS
ACCCTGAGTACGAGACACGA+GGG 0.700568 2.2:+27721517 None:intergenic
AGTAGTCTTGACATCCACAT+GGG 0.706350 2.2:+27720093 None:intergenic
AGAACAAGCGGATCTCTAAG+GGG 0.721950 2.2:-27721731 MS.gene77163:CDS
GGTTCATGGAGATTACTCTG+AGG 0.741731 2.2:-27718951 MS.gene77163:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATATTATGAAAATAAATAT+TGG + chr2.2:27721121-27721140 None:intergenic 10.0%
!!! ATTTTTTTTTTTATTTACAG+GGG - chr2.2:27720444-27720463 MS.gene77163:intron 10.0%
!!! GATTTTTTTTTTTATTTACA+GGG - chr2.2:27720443-27720462 MS.gene77163:intron 10.0%
!!! TGATTTTTTTTTTTATTTAC+AGG - chr2.2:27720442-27720461 MS.gene77163:intron 10.0%
!! GTAAAAAATGAAAATTTGAA+TGG + chr2.2:27718964-27718983 None:intergenic 15.0%
!!! GTTTTTTGTTTTTTGTAATT+TGG - chr2.2:27719153-27719172 MS.gene77163:intron 15.0%
!!! TAAGAGAATATTTCTTTTTT+TGG + chr2.2:27721404-27721423 None:intergenic 15.0%
!!! TTGGTATAAAAATTGTTTTA+TGG + chr2.2:27719692-27719711 None:intergenic 15.0%
!! ATATATAAAGAAGAAATCAC+TGG - chr2.2:27720771-27720790 MS.gene77163:intron 20.0%
!! ATATTCAATGAAAGTAAGAT+AGG + chr2.2:27719222-27719241 None:intergenic 20.0%
!! CTTAATGCTTATTTAGAAAA+TGG - chr2.2:27720196-27720215 MS.gene77163:intron 20.0%
!!! AAAATCTTTTGACAAATTTC+TGG - chr2.2:27720350-27720369 MS.gene77163:CDS 20.0%
!!! AAATCTTTTGACAAATTTCT+GGG - chr2.2:27720351-27720370 MS.gene77163:CDS 20.0%
!!! ATTTGAATGGATTTTGAAAA+AGG + chr2.2:27718951-27718970 None:intergenic 20.0%
!!! CAATACATTATTTCTAGTTT+TGG - chr2.2:27721480-27721499 MS.gene77163:intron 20.0%
!!! TCTTGTCTTTTAAATAATGT+TGG + chr2.2:27719894-27719913 None:intergenic 20.0%
!!! TTTGAATGGATTTTGAAAAA+GGG + chr2.2:27718950-27718969 None:intergenic 20.0%
! AAAAACAAAAAACATGACAG+AGG + chr2.2:27719146-27719165 None:intergenic 25.0%
! AAACCATTATAGAAAATGCA+AGG + chr2.2:27718993-27719012 None:intergenic 25.0%
! AACAGCATTTCATAAAAGAA+AGG + chr2.2:27720751-27720770 None:intergenic 25.0%
! AAGAAAATGTTGTCAAATAG+CGG + chr2.2:27719654-27719673 None:intergenic 25.0%
! AATAATCTGAAGGTTGTTTA+TGG + chr2.2:27721260-27721279 None:intergenic 25.0%
! ACAACATTATGACAAATAGA+TGG + chr2.2:27720394-27720413 None:intergenic 25.0%
! ACTTATAACCATCTAAAAAG+TGG - chr2.2:27721612-27721631 MS.gene77163:intron 25.0%
! ATATATTAGTGTATCCAACA+CGG - chr2.2:27720700-27720719 MS.gene77163:intron 25.0%
! ATTAAGCTATCTAAACAATC+AGG + chr2.2:27719255-27719274 None:intergenic 25.0%
! ATTATGACAAATAGATGGTT+CGG + chr2.2:27720389-27720408 None:intergenic 25.0%
! GAGAATAAAAATGAAGACAT+GGG + chr2.2:27719997-27720016 None:intergenic 25.0%
! TATCACCTGAATAAAAACTT+TGG - chr2.2:27721137-27721156 MS.gene77163:intron 25.0%
! TCTTACTTTCATTGAATATC+TGG - chr2.2:27719223-27719242 MS.gene77163:intron 25.0%
! TTAAGCTATCTAAACAATCA+GGG + chr2.2:27719254-27719273 None:intergenic 25.0%
! TTATTTCCATAATAGCCTAT+AGG + chr2.2:27719387-27719406 None:intergenic 25.0%
! TTGAACTTGTAATAATCTGA+AGG + chr2.2:27721270-27721289 None:intergenic 25.0%
!! AAAAACTTTGGTTGTTACTT+TGG - chr2.2:27721149-27721168 MS.gene77163:intron 25.0%
!! AAATATGTCTTAGTCTTTCA+TGG - chr2.2:27720138-27720157 MS.gene77163:CDS 25.0%
!! AACAACCAAAGTTTTTATTC+AGG + chr2.2:27721145-27721164 None:intergenic 25.0%
!! AAGCTAAAAGTTTTTCCTAT+AGG - chr2.2:27719369-27719388 MS.gene77163:intron 25.0%
!! AATATGTCTTAGTCTTTCAT+GGG - chr2.2:27720139-27720158 MS.gene77163:CDS 25.0%
!! AATTTTCCAAGATCAAACTT+GGG + chr2.2:27721047-27721066 None:intergenic 25.0%
!! TAACACTACCCAATTTTAAA+AGG + chr2.2:27721350-27721369 None:intergenic 25.0%
!! TTTCCTTGCATTTTCTATAA+TGG - chr2.2:27718987-27719006 MS.gene77163:intron 25.0%
!! TTTGGAAAGTTTGAAGTAAT+TGG + chr2.2:27721218-27721237 None:intergenic 25.0%
!! TTTGTCATAATGTTGTTTGT+TGG - chr2.2:27720398-27720417 MS.gene77163:intron 25.0%
!!! ATCATGTTGCCTTTTAAAAT+TGG - chr2.2:27721338-27721357 MS.gene77163:intron 25.0%
!!! GGTTTGATTTTGTTTCTATT+TGG - chr2.2:27721639-27721658 MS.gene77163:intron 25.0%
!!! TCATGTTGCCTTTTAAAATT+GGG - chr2.2:27721339-27721358 MS.gene77163:intron 25.0%
!!! TGATTGTTGTTTTATAAGTG+TGG + chr2.2:27719822-27719841 None:intergenic 25.0%
AATATCATACCAATCCTTCT+TGG + chr2.2:27719044-27719063 None:intergenic 30.0%
AGAAAATGTTGTCAAATAGC+GGG + chr2.2:27719653-27719672 None:intergenic 30.0%
CGAGAATAAAAATGAAGACA+TGG + chr2.2:27719998-27720017 None:intergenic 30.0%
CTACTGATAATTACACATTG+AGG - chr2.2:27720546-27720565 MS.gene77163:intron 30.0%
GAACATAAGTAACTAAGTGA+CGG + chr2.2:27719465-27719484 None:intergenic 30.0%
GTTACTTATGTTCGTAGATA+CGG - chr2.2:27719472-27719491 MS.gene77163:intron 30.0%
GTTGCTGAAATTTGATCAAT+TGG - chr2.2:27720162-27720181 MS.gene77163:intron 30.0%
GTTTGATCTTGGAAAATTGA+TGG - chr2.2:27721049-27721068 MS.gene77163:intron 30.0%
TAAGCTGAAAAAACATCTCA+TGG - chr2.2:27719404-27719423 MS.gene77163:intron 30.0%
! ATATGTCTTAGTCTTTCATG+GGG - chr2.2:27720140-27720159 MS.gene77163:CDS 30.0%
! CAATTTTCCAAGATCAAACT+TGG + chr2.2:27721048-27721067 None:intergenic 30.0%
! GAAGGATTGGTATGATATTA+AGG - chr2.2:27719045-27719064 MS.gene77163:intron 30.0%
! GTTTTCACACAAGCATTTAT+TGG + chr2.2:27721311-27721330 None:intergenic 30.0%
! GTTTTTCCTATAGGCTATTA+TGG - chr2.2:27719378-27719397 MS.gene77163:intron 30.0%
! TTATACCAAAAAGCATATCG+TGG - chr2.2:27719703-27719722 MS.gene77163:CDS 30.0%
!! AATGGATTTTGAAAAAGGGT+TGG + chr2.2:27718946-27718965 None:intergenic 30.0%
!! CTTTAAGGATCTTCACTTTT+CGG + chr2.2:27721022-27721041 None:intergenic 30.0%
!! GGTTTGATTTGTACATTGTT+AGG - chr2.2:27719174-27719193 MS.gene77163:intron 30.0%
AAATTCATTCCCGAGATGAT+TGG - chr2.2:27720942-27720961 MS.gene77163:intron 35.0%
AACCATCTAAAAAGTGGCTT+TGG - chr2.2:27721618-27721637 MS.gene77163:intron 35.0%
AACTTCCATTCTCATGTAAG+TGG + chr2.2:27720044-27720063 None:intergenic 35.0%
AATTCATTCCCGAGATGATT+GGG - chr2.2:27720943-27720962 MS.gene77163:intron 35.0%
ACAATCTAGTCAGATTAGAC+AGG - chr2.2:27720628-27720647 MS.gene77163:intron 35.0%
AGATAGATATTTCGAGCAGA+GGG + chr2.2:27719780-27719799 None:intergenic 35.0%
ATCCTGTGATTTGAAGGAAT+TGG - chr2.2:27720914-27720933 MS.gene77163:intron 35.0%
ATTCTCATGTAAGTGGAAAG+AGG + chr2.2:27720037-27720056 None:intergenic 35.0%
ATTTCACAACTGACAAACTG+AGG - chr2.2:27720471-27720490 MS.gene77163:intron 35.0%
ATTTCTTAACATGTGCCCTA+AGG + chr2.2:27721381-27721400 None:intergenic 35.0%
CGAAATATCTATCTAGCACT+GGG - chr2.2:27719786-27719805 MS.gene77163:intron 35.0%
CTACGGATCTGAACAAATAA+AGG + chr2.2:27720861-27720880 None:intergenic 35.0%
CTTCTAAACTTGTGCCTTAA+GGG - chr2.2:27721503-27721522 MS.gene77163:intron 35.0%
CTTTCCAAAAGCTCTCTATT+CGG - chr2.2:27721229-27721248 MS.gene77163:intron 35.0%
GACAAGAAAAAAGACTGAAC+TGG - chr2.2:27719907-27719926 MS.gene77163:intron 35.0%
GTAGATCACATATCGCTATA+GGG + chr2.2:27719758-27719777 None:intergenic 35.0%
TAGATAGATATTTCGAGCAG+AGG + chr2.2:27719781-27719800 None:intergenic 35.0%
TCATGCTAAAAGAGAACAGA+AGG + chr2.2:27721569-27721588 None:intergenic 35.0%
TCCTTGTAACCAAAACCAAT+GGG + chr2.2:27720113-27720132 None:intergenic 35.0%
TCGAAATATCTATCTAGCAC+TGG - chr2.2:27719785-27719804 MS.gene77163:intron 35.0%
TCTTTCCACTTACATGAGAA+TGG - chr2.2:27720036-27720055 MS.gene77163:CDS 35.0%
TGAACTGGCATTATCATGAT+GGG - chr2.2:27719922-27719941 MS.gene77163:intron 35.0%
TGATCTTGGAAAATTGATGG+AGG - chr2.2:27721052-27721071 MS.gene77163:intron 35.0%
TTCCTTGTAACCAAAACCAA+TGG + chr2.2:27720114-27720133 None:intergenic 35.0%
TTTCTTAACATGTGCCCTAA+GGG + chr2.2:27721380-27721399 None:intergenic 35.0%
! ACATTGAGGATGTTTTGCAT+TGG - chr2.2:27720560-27720579 MS.gene77163:intron 35.0%
! CTTTATTTGTTCAGATCCGT+AGG - chr2.2:27720859-27720878 MS.gene77163:intron 35.0%
! TAGAGTGTTTGAGGTTTCAT+TGG - chr2.2:27720258-27720277 MS.gene77163:intron 35.0%
! TGTTTCTATTTGGTCCTTGT+AGG - chr2.2:27721649-27721668 MS.gene77163:intron 35.0%
! TTGTTCCACGATATGCTTTT+TGG + chr2.2:27719711-27719730 None:intergenic 35.0%
! TTTCATTGGCTGATCTTCAA+GGG - chr2.2:27720272-27720291 MS.gene77163:CDS 35.0%
!! AATAATGTTGGTCTTGCTTG+TGG + chr2.2:27719882-27719901 None:intergenic 35.0%
!! AATGTTAACTTGTGCCCTTA+AGG + chr2.2:27721520-27721539 None:intergenic 35.0%
!! ATCCAACACATGTTTTAGGT+AGG - chr2.2:27720724-27720743 MS.gene77163:intron 35.0%
!! TTTCTAAAGTATCGAGTCCA+GGG - chr2.2:27719960-27719979 MS.gene77163:intron 35.0%
!!! AAATCACTGGTTTTGAACCT+AGG - chr2.2:27720784-27720803 MS.gene77163:intron 35.0%
!!! AACCAAAGCCACTTTTTAGA+TGG + chr2.2:27721623-27721642 None:intergenic 35.0%
!!! GCTATTTAACCCATTGGTTT+TGG - chr2.2:27720101-27720120 MS.gene77163:CDS 35.0%
!!! TTTTCTAAAGTATCGAGTCC+AGG - chr2.2:27719959-27719978 MS.gene77163:intron 35.0%
AAAGCTCCCAAGTTTGATCT+TGG - chr2.2:27721038-27721057 MS.gene77163:intron 40.0%
AACTGACAAACTGAGGTCAT+TGG - chr2.2:27720478-27720497 MS.gene77163:intron 40.0%
AAGAACAAGCGGATCTCTAA+GGG - chr2.2:27718889-27718908 MS.gene77163:CDS 40.0%
AATCTCCTTCCCAATCATCT+CGG + chr2.2:27720955-27720974 None:intergenic 40.0%
ACCATGCATTCAGGAAGATT+AGG - chr2.2:27720302-27720321 MS.gene77163:CDS 40.0%
ACCTAATCTTCCTGAATGCA+TGG + chr2.2:27720306-27720325 None:intergenic 40.0%
AGAAGACAAAGCATGATCCT+AGG + chr2.2:27720804-27720823 None:intergenic 40.0%
AGCATCATCCTGTGATTTGA+AGG - chr2.2:27720908-27720927 MS.gene77163:intron 40.0%
AGCTATCTAAACAATCAGGG+AGG + chr2.2:27719251-27719270 None:intergenic 40.0%
ATCCATTTGCCAAGAAGGAT+TGG - chr2.2:27719032-27719051 MS.gene77163:intron 40.0%
ATTTGGTCCTTGTAGGTTCA+TGG - chr2.2:27721656-27721675 MS.gene77163:intron 40.0%
CAAGCTCCAACAATTTCAGT+AGG + chr2.2:27721746-27721765 None:intergenic 40.0%
CACTAAGTATACTCAGTCCA+AGG + chr2.2:27719522-27719541 None:intergenic 40.0%
CTGAACTGGCATTATCATGA+TGG - chr2.2:27719921-27719940 MS.gene77163:intron 40.0%
CTGACTAGATTGTGCATAAC+AGG + chr2.2:27720621-27720640 None:intergenic 40.0%
CTTGTAGTGCAGAAAACAGT+GGG - chr2.2:27719584-27719603 MS.gene77163:CDS 40.0%
GAATGACAGATTGCTTCAGA+TGG - chr2.2:27720226-27720245 MS.gene77163:intron 40.0%
GACAGAGGAAAACAATACCT+TGG + chr2.2:27719131-27719150 None:intergenic 40.0%
GACCAATTCCTTCAAATCAC+AGG + chr2.2:27720919-27720938 None:intergenic 40.0%
GAGGAACCTACTGAAATTGT+TGG - chr2.2:27721737-27721756 MS.gene77163:CDS 40.0%
GATCAAACTTGGGAGCTTTA+AGG + chr2.2:27721037-27721056 None:intergenic 40.0%
GCTATCTAAACAATCAGGGA+GGG + chr2.2:27719250-27719269 None:intergenic 40.0%
GCTTCTAAACTTGTGCCTTA+AGG - chr2.2:27721502-27721521 MS.gene77163:intron 40.0%
GGTAGATCACATATCGCTAT+AGG + chr2.2:27719759-27719778 None:intergenic 40.0%
GTAATCTCCATGAACCTACA+AGG + chr2.2:27721666-27721685 None:intergenic 40.0%
GTCCTACCTAAAACATGTGT+TGG + chr2.2:27720729-27720748 None:intergenic 40.0%
TAAGAACAAGCGGATCTCTA+AGG - chr2.2:27718888-27718907 MS.gene77163:CDS 40.0%
TACCAATCCTTCTTGGCAAA+TGG + chr2.2:27719037-27719056 None:intergenic 40.0%
TCAAATCACAGGATGATGCT+TGG + chr2.2:27720908-27720927 None:intergenic 40.0%
TCATCTCGGGAATGAATTTG+CGG + chr2.2:27720941-27720960 None:intergenic 40.0%
TCTTGTAGTGCAGAAAACAG+TGG - chr2.2:27719583-27719602 MS.gene77163:CDS 40.0%
TGAGAGCTGAAGATGTTCAA+GGG - chr2.2:27720326-27720345 MS.gene77163:CDS 40.0%
TGATCTCAACCATCTTCCTA+CGG + chr2.2:27720878-27720897 None:intergenic 40.0%
TTCTTCACCTGGAAAACTGA+AGG + chr2.2:27719073-27719092 None:intergenic 40.0%
TTGAGAGCTGAAGATGTTCA+AGG - chr2.2:27720325-27720344 MS.gene77163:CDS 40.0%
! ACTCAAGCATAGAGTGTTTG+AGG - chr2.2:27720249-27720268 MS.gene77163:intron 40.0%
! AGTAGTCTTGACATCCACAT+GGG + chr2.2:27720531-27720550 None:intergenic 40.0%
! CGGTATCCAACACATGTTTT+AGG - chr2.2:27720720-27720739 MS.gene77163:intron 40.0%
! CTAGCTGCTATTTAACCCAT+TGG - chr2.2:27720095-27720114 MS.gene77163:CDS 40.0%
! GAAACCGAATAGAGAGCTTT+TGG + chr2.2:27721236-27721255 None:intergenic 40.0%
! GTTTCATTGGCTGATCTTCA+AGG - chr2.2:27720271-27720290 MS.gene77163:CDS 40.0%
! GTTTTCCAGGTGAAGAATGT+CGG - chr2.2:27719076-27719095 MS.gene77163:intron 40.0%
! TTCATTGGCTGATCTTCAAG+GGG - chr2.2:27720273-27720292 MS.gene77163:CDS 40.0%
!! AGTGTTAACTTGTGCCCTTA+GGG - chr2.2:27721363-27721382 MS.gene77163:intron 40.0%
!! CAATGGGTTAAATAGCAGCT+AGG + chr2.2:27720097-27720116 None:intergenic 40.0%
!! TAGTGTTAACTTGTGCCCTT+AGG - chr2.2:27721362-27721381 MS.gene77163:intron 40.0%
!! TTCTAAAGTATCGAGTCCAG+GGG - chr2.2:27719961-27719980 MS.gene77163:intron 40.0%
!! TTGGTTGTTACTTTGGTCAC+TGG - chr2.2:27721156-27721175 MS.gene77163:intron 40.0%
!! TTGTCAAATAGCGGGTAAAG+TGG + chr2.2:27719645-27719664 None:intergenic 40.0%
!! TTTGCATTGGCTTTACCAAG+AGG - chr2.2:27720573-27720592 MS.gene77163:intron 40.0%
!!! ACCCATTGGTTTTGGTTACA+AGG - chr2.2:27720109-27720128 MS.gene77163:CDS 40.0%
AACTCTTGTTGAAGCCCATG+TGG - chr2.2:27720514-27720533 MS.gene77163:intron 45.0%
ACATGTGTTGGATACCGTGT+TGG + chr2.2:27720717-27720736 None:intergenic 45.0%
ACTCAGTCCAAGGACATGTT+TGG + chr2.2:27719512-27719531 None:intergenic 45.0%
AGAACAAGCGGATCTCTAAG+GGG - chr2.2:27718890-27718909 MS.gene77163:CDS 45.0%
ATCTCCTTCCCAATCATCTC+GGG + chr2.2:27720954-27720973 None:intergenic 45.0%
ATGTTGGCACAAAGGTAGAG+AGG - chr2.2:27721693-27721712 MS.gene77163:intron 45.0%
CAAGGGGTAAATACTAGACG+TGG + chr2.2:27720985-27721004 None:intergenic 45.0%
CGGATGAACACATTCTGCAA+GGG + chr2.2:27721002-27721021 None:intergenic 45.0%
GATCCGCTTGTTCTTACCAA+CGG + chr2.2:27718884-27718903 None:intergenic 45.0%
GGATGAACACATTCTGCAAG+GGG + chr2.2:27721001-27721020 None:intergenic 45.0%
GGTTCATGGAGATTACTCTG+AGG - chr2.2:27721670-27721689 MS.gene77163:intron 45.0%
GTCCAAGGACATGTTTGGAT+TGG + chr2.2:27719507-27719526 None:intergenic 45.0%
TCGGATGAACACATTCTGCA+AGG + chr2.2:27721003-27721022 None:intergenic 45.0%
TGCCAATCCAAACATGTCCT+TGG - chr2.2:27719502-27719521 MS.gene77163:intron 45.0%
TGCTGATCCATTTGCCAAGA+AGG - chr2.2:27719027-27719046 MS.gene77163:intron 45.0%
TGTTCAGATCCGTAGGAAGA+TGG - chr2.2:27720866-27720885 MS.gene77163:intron 45.0%
! ATCTCTAAGGGGAAGAAAGG+TGG - chr2.2:27718901-27718920 MS.gene77163:CDS 45.0%
! CAGTAGTCTTGACATCCACA+TGG + chr2.2:27720532-27720551 None:intergenic 45.0%
! GGAGATTACTCTGAGGATGT+TGG - chr2.2:27721677-27721696 MS.gene77163:intron 45.0%
! TAAGGCTCCTTCAGTTTTCC+AGG - chr2.2:27719063-27719082 MS.gene77163:intron 45.0%
!! ATATTATGAAAATAAATATT+GGG + chr2.2:27721120-27721139 None:intergenic 5.0%
!!! AAACAAAATTAAAATTTTAA+AGG + chr2.2:27721545-27721564 None:intergenic 5.0%
!!! AACAAAATTAAAATTTTAAA+GGG + chr2.2:27721544-27721563 None:intergenic 5.0%
AGAGAGGCCTGCTGATGAAA+TGG - chr2.2:27721709-27721728 MS.gene77163:CDS 50.0%
CATAACAGGTCCTCTTCACC+TGG + chr2.2:27720607-27720626 None:intergenic 50.0%
CATTCCCGAGATGATTGGGA+AGG - chr2.2:27720947-27720966 MS.gene77163:intron 50.0%
GCCTGCTGATGAAATGGTGA+CGG - chr2.2:27721715-27721734 MS.gene77163:CDS 50.0%
TACCAAGAGGAGAGCTAACC+AGG - chr2.2:27720586-27720605 MS.gene77163:intron 50.0%
TCCGTCACCATTTCATCAGC+AGG + chr2.2:27721719-27721738 None:intergenic 50.0%
TCTTGCCGACATTCTTCACC+TGG + chr2.2:27719084-27719103 None:intergenic 50.0%
TGAGGTCATTGGTGCGTAAG+TGG - chr2.2:27720489-27720508 MS.gene77163:intron 50.0%
! CGGATCTCTAAGGGGAAGAA+AGG - chr2.2:27718898-27718917 MS.gene77163:CDS 50.0%
! CTCTGAGGATGTTGGCACAA+AGG - chr2.2:27721685-27721704 MS.gene77163:intron 50.0%
! TGGCCGTTGGTAAGAACAAG+CGG - chr2.2:27718878-27718897 MS.gene77163:CDS 50.0%
!! ATGTTGGTCTTGCTTGTGGC+AGG + chr2.2:27719878-27719897 None:intergenic 50.0%
!! TGCTGATGAAATGGTGACGG+AGG - chr2.2:27721718-27721737 MS.gene77163:CDS 50.0%
!! TGTTGGTCTTGCTTGTGGCA+GGG + chr2.2:27719877-27719896 None:intergenic 50.0%
ACCCTCGTGTCTCGTACTCA+GGG - chr2.2:27719103-27719122 MS.gene77163:intron 55.0%
ACCCTGAGTACGAGACACGA+GGG + chr2.2:27719107-27719126 None:intergenic 55.0%
CATGGGAATGTCATGTCCCC+TGG + chr2.2:27719980-27719999 None:intergenic 55.0%
GGAGAGCTAACCAGGTGAAG+AGG - chr2.2:27720594-27720613 MS.gene77163:intron 55.0%
GGGACGAAGACCATGCATTC+AGG - chr2.2:27720293-27720312 MS.gene77163:CDS 55.0%
TACCCTGAGTACGAGACACG+AGG + chr2.2:27719108-27719127 None:intergenic 55.0%
! CACCTGGTTAGCTCTCCTCT+TGG + chr2.2:27720591-27720610 None:intergenic 55.0%
! GTCTCGTACTCAGGGTACCA+AGG - chr2.2:27719111-27719130 MS.gene77163:intron 55.0%
CTTGTGGCAGGGCAGAAGTG+GGG + chr2.2:27719866-27719885 None:intergenic 60.0%
GACCCTCGTGTCTCGTACTC+AGG - chr2.2:27719102-27719121 MS.gene77163:intron 60.0%
GCTTGTGGCAGGGCAGAAGT+GGG + chr2.2:27719867-27719886 None:intergenic 60.0%
TGCTTGTGGCAGGGCAGAAG+TGG + chr2.2:27719868-27719887 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 27718877 27721766 27718877 ID=MS.gene77163
chr2.2 mRNA 27718877 27721766 27718877 ID=MS.gene77163.t1;Parent=MS.gene77163
chr2.2 exon 27721708 27721766 27721708 ID=MS.gene77163.t1.exon1;Parent=MS.gene77163.t1
chr2.2 CDS 27721708 27721766 27721708 ID=cds.MS.gene77163.t1;Parent=MS.gene77163.t1
chr2.2 exon 27721511 27721616 27721511 ID=MS.gene77163.t1.exon2;Parent=MS.gene77163.t1
chr2.2 CDS 27721511 27721616 27721511 ID=cds.MS.gene77163.t1;Parent=MS.gene77163.t1
chr2.2 exon 27720271 27720408 27720271 ID=MS.gene77163.t1.exon3;Parent=MS.gene77163.t1
chr2.2 CDS 27720271 27720408 27720271 ID=cds.MS.gene77163.t1;Parent=MS.gene77163.t1
chr2.2 exon 27719994 27720179 27719994 ID=MS.gene77163.t1.exon4;Parent=MS.gene77163.t1
chr2.2 CDS 27719994 27720179 27719994 ID=cds.MS.gene77163.t1;Parent=MS.gene77163.t1
chr2.2 exon 27719570 27719770 27719570 ID=MS.gene77163.t1.exon5;Parent=MS.gene77163.t1
chr2.2 CDS 27719570 27719770 27719570 ID=cds.MS.gene77163.t1;Parent=MS.gene77163.t1
chr2.2 exon 27718877 27718972 27718877 ID=MS.gene77163.t1.exon6;Parent=MS.gene77163.t1
chr2.2 CDS 27718877 27718972 27718877 ID=cds.MS.gene77163.t1;Parent=MS.gene77163.t1
Gene Sequence

>MS.gene77163

ATGGCCGTTGGTAAGAACAAGCGGATCTCTAAGGGGAAGAAAGGTGGCAAGAAGAAAGCGTTAGTACCAACCCTTTTTCAAAATCCATTCAAATTTTCATTTTTTACAATTTTCCTTGCATTTTCTATAATGGTTTCTATGAACTTGCAGTGCTGATCCATTTGCCAAGAAGGATTGGTATGATATTAAGGCTCCTTCAGTTTTCCAGGTGAAGAATGTCGGCAAGACCCTCGTGTCTCGTACTCAGGGTACCAAGGTATTGTTTTCCTCTGTCATGTTTTTTGTTTTTTGTAATTTGGTTTGATTTGTACATTGTTAGGTTATTGTACGAATTTATATGATCCTATCTTACTTTCATTGAATATCTGGACCCTCCCTGATTGTTTAGATAGCTTAATTCAGAGCTTTTATATTCAAGTGTTGTTATATAAGTGTTTATGTATAAACTATTTTTATAACTAAAGATAGAATAAAGTCAAATTGTTTTCACATAAGCTAAAAGTTTTTCCTATAGGCTATTATGGAAATAAGCTGAAAAAACATCTCATGGATATGTCATAAGCTTTTTCGTTAAGCTCTTTCAAACCGTCACTTAGTTACTTATGTTCGTAGATACGGTCAAATATGCCAATCCAAACATGTCCTTGGACTGAGTATACTTAGTGACATTATAGTGTTCGTGTTGTGTTTTTGTCAGTGTTCTCAATCTTGTAGTGCAGAAAACAGTGGGTTGTTAAAATTCTGCTACACAATAGTGCTATAGTGCCACTTTACCCGCTATTTGACAACATTTTCTTTTGCTAAATAGTGTACCATAAAACAATTTTTATACCAAAAAGCATATCGTGGAACAATAGTGATTTGTATAAATTCAGCTACCCTATAGCGATATGTGATCTACCCTCTGCTCGAAATATCTATCTAGCACTGGGAGAGATGCGTCCACACTTATAAAACAACAATCATATCTTAAACTATCAGCTTGACCCCACTTCTGCCCTGCCACAAGCAAGACCAACATTATTTAAAAGACAAGAAAAAAGACTGAACTGGCATTATCATGATGGGCTCAAACTTAAATATTTTCTAAAGTATCGAGTCCAGGGGACATGACATTCCCATGTCTTCATTTTTATTCTCGTGATTAGAGTGAGTGTCCTCTTTCCACTTACATGAGAATGGAAGTTTTAATGTTACATTGTAACATATATTCATTTCCTAGCTGCTATTTAACCCATTGGTTTTGGTTACAAGGAATAACAAATATGTCTTAGTCTTTCATGGGGTTGCTGAAATTTGATCAATTGGAGTTTTGCACGCTTAATGCTTATTTAGAAAATGGTTGTTTTGAATGACAGATTGCTTCAGATGGACTCAAGCATAGAGTGTTTGAGGTTTCATTGGCTGATCTTCAAGGGGACGAAGACCATGCATTCAGGAAGATTAGGTTGAGAGCTGAAGATGTTCAAGGGAAAAATCTTTTGACAAATTTCTGGGTATGATAAGCTGCCGAACCATCTATTTGTCATAATGTTGTTTGTTGGTATTTTTTTTTAATTTGATTTTGATTTTTTTTTTTATTTACAGGGGATGAATTTCACAACTGACAAACTGAGGTCATTGGTGCGTAAGTGGCAAACTCTTGTTGAAGCCCATGTGGATGTCAAGACTACTGATAATTACACATTGAGGATGTTTTGCATTGGCTTTACCAAGAGGAGAGCTAACCAGGTGAAGAGGACCTGTTATGCACAATCTAGTCAGATTAGACAGGTAGATACATTGACGCTTTTCTTTTCAAATCATACTAGTTTTCTAGATTTATATATTAGTGTATCCAACACGGTATCCAACACATGTTTTAGGTAGGACCTTTCTTTTATGAAATGCTGTTATATATAAAGAAGAAATCACTGGTTTTGAACCTAGGATCATGCTTTGTCTTCTTCTAAGATATTTCTTATTAGTTACTAATGTTACACCTTTATTTGTTCAGATCCGTAGGAAGATGGTTGAGATCATGATCAACCAAGCATCATCCTGTGATTTGAAGGAATTGGTCCGCAAATTCATTCCCGAGATGATTGGGAAGGAGATTGAGAAAGCCACGTCTAGTATTTACCCCTTGCAGAATGTGTTCATCCGAAAAGTGAAGATCCTTAAAGCTCCCAAGTTTGATCTTGGAAAATTGATGGAGGTATTTTTTTGAAACAACTTTTTTATGTTTGTTCTCATTCACACCCAATATTTATTTTCATAATATCACCTGAATAAAAACTTTGGTTGTTACTTTGGTCACTGGTGTTATTTGCTTGACGAGATGAACTCTTTAATATAACCAATTACTTCAAACTTTCCAAAAGCTCTCTATTCGGTTTCTCCATAAACAACCTTCAGATTATTACAAGTTCAAAACTAAATACTTACTGATCCAATAAATGCTTGTGTGAAAACAAACTTAATCATGTTGCCTTTTAAAATTGGGTAGTGTTAACTTGTGCCCTTAGGGCACATGTTAAGAAATCCAAAAAAAGAAATATTCTCTTAAACTTTGTGCATTCAATTCATTAAAACATTAAAAAGTAAATTTAATGCACGCATTTCAATACATTATTTCTAGTTTTGGCTTCTAAACTTGTGCCTTAAGGGCACAAGTTAACATTTCCCTTTAAAATTTTAATTTTGTTTTCCTTCTGTTCTCTTTTAGCATGAGTATGCAGTTGTCACGTGTGCACACTTATAACCATCTAAAAAGTGGCTTTGGTTTGATTTTGTTTCTATTTGGTCCTTGTAGGTTCATGGAGATTACTCTGAGGATGTTGGCACAAAGGTAGAGAGGCCTGCTGATGAAATGGTGACGGAGGAACCTACTGAAATTGTTGGAGCTTGA

Protein sequence

>MS.gene77163.t1

MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASDGLKHRVFEVSLADLQGDEDHAFRKIRLRAEDVQGKNLLTNFWGMNFTTDKLRSLVRKWQTLVEAHVDVKTTDNYTLRMFCIGFTKRRANQVKRTCYAQSSQIRQIRRKMVEIMINQASSCDLKELVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGTKVERPADEMVTEEPTEIVGA