Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77163.t1 | XP_013469779.1 | 97.7 | 261 | 6 | 0 | 1 | 261 | 1 | 261 | 2.80E-139 | 504.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77163.t1 | Q8GTE3 | 92.7 | 261 | 19 | 0 | 1 | 261 | 1 | 261 | 2.3e-134 | 479.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77163.t1 | B7FLW8 | 97.7 | 261 | 6 | 0 | 1 | 261 | 1 | 261 | 2.0e-139 | 504.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050277 | MS.gene77163 | 0.829307 | 5.54E-55 | -1.69E-46 |
| MS.gene050290 | MS.gene77163 | 0.827823 | 1.26E-54 | -1.69E-46 |
| MS.gene050574 | MS.gene77163 | 0.814428 | 1.55E-51 | -1.69E-46 |
| MS.gene050838 | MS.gene77163 | 0.828865 | 7.09E-55 | -1.69E-46 |
| MS.gene050916 | MS.gene77163 | 0.879702 | 1.00E-69 | -1.69E-46 |
| MS.gene051063 | MS.gene77163 | 0.80769 | 4.47E-50 | -1.69E-46 |
| MS.gene051330 | MS.gene77163 | 0.876349 | 1.50E-68 | -1.69E-46 |
| MS.gene051700 | MS.gene77163 | 0.818578 | 1.82E-52 | -1.69E-46 |
| MS.gene051746 | MS.gene77163 | 0.845927 | 2.99E-59 | -1.69E-46 |
| MS.gene051748 | MS.gene77163 | 0.830185 | 3.39E-55 | -1.69E-46 |
| MS.gene051850 | MS.gene77163 | 0.852283 | 5.11E-61 | -1.69E-46 |
| MS.gene051885 | MS.gene77163 | 0.806903 | 6.56E-50 | -1.69E-46 |
| MS.gene05188 | MS.gene77163 | 0.807813 | 4.21E-50 | -1.69E-46 |
| MS.gene051903 | MS.gene77163 | 0.860718 | 1.70E-63 | -1.69E-46 |
| MS.gene052133 | MS.gene77163 | 0.805158 | 1.53E-49 | -1.69E-46 |
| MS.gene052947 | MS.gene77163 | 0.884965 | 1.22E-71 | -1.69E-46 |
| MS.gene053952 | MS.gene77163 | 0.825275 | 5.12E-54 | -1.69E-46 |
| MS.gene054937 | MS.gene77163 | 0.846143 | 2.61E-59 | -1.69E-46 |
| MS.gene055808 | MS.gene77163 | 0.843407 | 1.43E-58 | -1.69E-46 |
| MS.gene056043 | MS.gene77163 | -0.801052 | 1.08E-48 | -1.69E-46 |
| MS.gene056075 | MS.gene77163 | 0.877931 | 4.23E-69 | -1.69E-46 |
| MS.gene056091 | MS.gene77163 | 0.846324 | 2.33E-59 | -1.69E-46 |
| MS.gene056215 | MS.gene77163 | 0.802561 | 5.29E-49 | -1.69E-46 |
| MS.gene056257 | MS.gene77163 | 0.810869 | 9.30E-51 | -1.69E-46 |
| MS.gene056631 | MS.gene77163 | 0.852748 | 3.77E-61 | -1.69E-46 |
| MS.gene056917 | MS.gene77163 | 0.829085 | 6.27E-55 | -1.69E-46 |
| MS.gene057094 | MS.gene77163 | 0.892436 | 1.59E-74 | -1.69E-46 |
| MS.gene057705 | MS.gene77163 | 0.813723 | 2.22E-51 | -1.69E-46 |
| MS.gene058354 | MS.gene77163 | 0.861843 | 7.72E-64 | -1.69E-46 |
| MS.gene058364 | MS.gene77163 | 0.821913 | 3.14E-53 | -1.69E-46 |
| MS.gene058906 | MS.gene77163 | 0.810741 | 9.91E-51 | -1.69E-46 |
| MS.gene059227 | MS.gene77163 | 0.817496 | 3.20E-52 | -1.69E-46 |
| MS.gene059726 | MS.gene77163 | 0.800924 | 1.15E-48 | -1.69E-46 |
| MS.gene06001 | MS.gene77163 | 0.928071 | 4.84E-92 | -1.69E-46 |
| MS.gene060429 | MS.gene77163 | 0.865218 | 6.93E-65 | -1.69E-46 |
| MS.gene060830 | MS.gene77163 | 0.818043 | 2.41E-52 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77163.t1 | MTR_1g103100 | 97.701 | 261 | 6 | 0 | 1 | 261 | 1 | 261 | 0.0 | 530 |
| MS.gene77163.t1 | MTR_3g012040 | 95.785 | 261 | 11 | 0 | 1 | 261 | 1 | 261 | 0.0 | 497 |
| MS.gene77163.t1 | MTR_5g006440 | 94.636 | 261 | 14 | 0 | 1 | 261 | 1 | 261 | 9.71e-179 | 492 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77163.t1 | AT3G04840 | 85.115 | 262 | 38 | 1 | 1 | 261 | 1 | 262 | 1.68e-163 | 453 |
| MS.gene77163.t1 | AT4G34670 | 85.496 | 262 | 37 | 1 | 1 | 261 | 1 | 262 | 4.36e-163 | 452 |
Find 78 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCAAACTTGGGAGCTTTA+AGG | 0.168578 | 2.2:+27719587 | None:intergenic |
| AATATCATACCAATCCTTCT+TGG | 0.295389 | 2.2:+27721580 | None:intergenic |
| ATTTGGTCCTTGTAGGTTCA+TGG | 0.297913 | 2.2:-27718965 | MS.gene77163:intron |
| GAAGGATTGGTATGATATTA+AGG | 0.312711 | 2.2:-27721576 | MS.gene77163:CDS |
| CTGACTAGATTGTGCATAAC+AGG | 0.339955 | 2.2:+27720003 | None:intergenic |
| AAAGCTCCCAAGTTTGATCT+TGG | 0.357514 | 2.2:-27719583 | MS.gene77163:CDS |
| TAAGAACAAGCGGATCTCTA+AGG | 0.365175 | 2.2:-27721733 | MS.gene77163:CDS |
| GTTTGATCTTGGAAAATTGA+TGG | 0.369245 | 2.2:-27719572 | MS.gene77163:CDS |
| AAATTCATTCCCGAGATGAT+TGG | 0.381702 | 2.2:-27719679 | MS.gene77163:CDS |
| GGGACGAAGACCATGCATTC+AGG | 0.393353 | 2.2:-27720328 | MS.gene77163:CDS |
| ATCCTGTGATTTGAAGGAAT+TGG | 0.402781 | 2.2:-27719707 | MS.gene77163:CDS |
| GACCCTCGTGTCTCGTACTC+AGG | 0.406163 | 2.2:-27721519 | MS.gene77163:CDS |
| TACCAATCCTTCTTGGCAAA+TGG | 0.412105 | 2.2:+27721587 | None:intergenic |
| TAGAGTGTTTGAGGTTTCAT+TGG | 0.413434 | 2.2:-27720363 | MS.gene77163:CDS |
| GTTTCATTGGCTGATCTTCA+AGG | 0.434675 | 2.2:-27720350 | MS.gene77163:CDS |
| TGCTGATCCATTTGCCAAGA+AGG | 0.436339 | 2.2:-27721594 | MS.gene77163:CDS |
| AATTCATTCCCGAGATGATT+GGG | 0.437177 | 2.2:-27719678 | MS.gene77163:CDS |
| AGCATCATCCTGTGATTTGA+AGG | 0.439297 | 2.2:-27719713 | MS.gene77163:CDS |
| TACCAAGAGGAGAGCTAACC+AGG | 0.440122 | 2.2:-27720035 | MS.gene77163:CDS |
| TCCGTCACCATTTCATCAGC+AGG | 0.444686 | 2.2:+27718905 | None:intergenic |
| ACTCAAGCATAGAGTGTTTG+AGG | 0.454600 | 2.2:-27720372 | MS.gene77163:CDS |
| ACCATGCATTCAGGAAGATT+AGG | 0.462005 | 2.2:-27720319 | MS.gene77163:CDS |
| ATCCATTTGCCAAGAAGGAT+TGG | 0.465718 | 2.2:-27721589 | MS.gene77163:CDS |
| ATCTCCTTCCCAATCATCTC+GGG | 0.483111 | 2.2:+27719670 | None:intergenic |
| GAGGAACCTACTGAAATTGT+TGG | 0.484047 | 2.2:-27718884 | MS.gene77163:CDS |
| TGTTCAGATCCGTAGGAAGA+TGG | 0.490433 | 2.2:-27719755 | MS.gene77163:intron |
| CACCTGGTTAGCTCTCCTCT+TGG | 0.502596 | 2.2:+27720033 | None:intergenic |
| AACTGACAAACTGAGGTCAT+TGG | 0.506332 | 2.2:-27720143 | MS.gene77163:CDS |
| TGAGGTCATTGGTGCGTAAG+TGG | 0.507827 | 2.2:-27720132 | MS.gene77163:CDS |
| CGGATCTCTAAGGGGAAGAA+AGG | 0.516719 | 2.2:-27721723 | MS.gene77163:CDS |
| AAGAACAAGCGGATCTCTAA+GGG | 0.521243 | 2.2:-27721732 | MS.gene77163:CDS |
| CTTGTTCTTACCAACGGCCA+TGG | 0.523346 | 2.2:+27721746 | None:intergenic |
| ACCTAATCTTCCTGAATGCA+TGG | 0.523822 | 2.2:+27720318 | None:intergenic |
| TTTCATTGGCTGATCTTCAA+GGG | 0.523908 | 2.2:-27720349 | MS.gene77163:CDS |
| TCATCTCGGGAATGAATTTG+CGG | 0.528925 | 2.2:+27719683 | None:intergenic |
| AGAGAGGCCTGCTGATGAAA+TGG | 0.532099 | 2.2:-27718912 | MS.gene77163:CDS |
| TCTTGCCGACATTCTTCACC+TGG | 0.534041 | 2.2:+27721540 | None:intergenic |
| AATCTCCTTCCCAATCATCT+CGG | 0.535678 | 2.2:+27719669 | None:intergenic |
| TTGAGAGCTGAAGATGTTCA+AGG | 0.537527 | 2.2:-27720296 | MS.gene77163:CDS |
| CGGATGAACACATTCTGCAA+GGG | 0.539130 | 2.2:+27719622 | None:intergenic |
| TCAAATCACAGGATGATGCT+TGG | 0.544201 | 2.2:+27719716 | None:intergenic |
| CATAACAGGTCCTCTTCACC+TGG | 0.545447 | 2.2:+27720017 | None:intergenic |
| GGAGAGCTAACCAGGTGAAG+AGG | 0.557404 | 2.2:-27720027 | MS.gene77163:CDS |
| GAATGACAGATTGCTTCAGA+TGG | 0.560187 | 2.2:-27720395 | MS.gene77163:intron |
| CTCTGAGGATGTTGGCACAA+AGG | 0.562498 | 2.2:-27718936 | MS.gene77163:CDS |
| CTTTATTTGTTCAGATCCGT+AGG | 0.563835 | 2.2:-27719762 | MS.gene77163:intron |
| GATCCGCTTGTTCTTACCAA+CGG | 0.569816 | 2.2:+27721740 | None:intergenic |
| GACCAATTCCTTCAAATCAC+AGG | 0.574407 | 2.2:+27719705 | None:intergenic |
| TCGGATGAACACATTCTGCA+AGG | 0.575354 | 2.2:+27719621 | None:intergenic |
| ACAATCTAGTCAGATTAGAC+AGG | 0.580594 | 2.2:-27719993 | MS.gene77163:intron |
| CAAGCTCCAACAATTTCAGT+AGG | 0.582102 | 2.2:+27718878 | None:intergenic |
| GGAGATTACTCTGAGGATGT+TGG | 0.587473 | 2.2:-27718944 | MS.gene77163:CDS |
| TTCTTCACCTGGAAAACTGA+AGG | 0.588083 | 2.2:+27721551 | None:intergenic |
| TGATCTCAACCATCTTCCTA+CGG | 0.590794 | 2.2:+27719746 | None:intergenic |
| TTCATTGGCTGATCTTCAAG+GGG | 0.595752 | 2.2:-27720348 | MS.gene77163:CDS |
| CAGTAGTCTTGACATCCACA+TGG | 0.596992 | 2.2:+27720092 | None:intergenic |
| ACTCTGCAAACCATGGCCGT+TGG | 0.603780 | 2.2:-27721756 | None:intergenic |
| CATTCCCGAGATGATTGGGA+AGG | 0.605231 | 2.2:-27719674 | MS.gene77163:CDS |
| TGATCTTGGAAAATTGATGG+AGG | 0.612140 | 2.2:-27719569 | MS.gene77163:intron |
| TGAGAGCTGAAGATGTTCAA+GGG | 0.612312 | 2.2:-27720295 | MS.gene77163:CDS |
| ACCCTCGTGTCTCGTACTCA+GGG | 0.615233 | 2.2:-27721518 | MS.gene77163:CDS |
| ATCTCTAAGGGGAAGAAAGG+TGG | 0.621403 | 2.2:-27721720 | MS.gene77163:CDS |
| AACTCTTGTTGAAGCCCATG+TGG | 0.622205 | 2.2:-27720107 | MS.gene77163:CDS |
| GTCTCGTACTCAGGGTACCA+AGG | 0.623684 | 2.2:-27721510 | MS.gene77163:intron |
| TGGCCGTTGGTAAGAACAAG+CGG | 0.624911 | 2.2:-27721743 | MS.gene77163:CDS |
| GCCTGCTGATGAAATGGTGA+CGG | 0.629382 | 2.2:-27718906 | MS.gene77163:CDS |
| GGATGAACACATTCTGCAAG+GGG | 0.631103 | 2.2:+27719623 | None:intergenic |
| CAAGGGGTAAATACTAGACG+TGG | 0.633754 | 2.2:+27719639 | None:intergenic |
| CTACTGATAATTACACATTG+AGG | 0.636083 | 2.2:-27720075 | MS.gene77163:CDS |
| TTTGCATTGGCTTTACCAAG+AGG | 0.642280 | 2.2:-27720048 | MS.gene77163:CDS |
| TACCCTGAGTACGAGACACG+AGG | 0.648373 | 2.2:+27721516 | None:intergenic |
| ATGTTGGCACAAAGGTAGAG+AGG | 0.654238 | 2.2:-27718928 | MS.gene77163:CDS |
| ATTTCACAACTGACAAACTG+AGG | 0.681977 | 2.2:-27720150 | MS.gene77163:CDS |
| TGCTGATGAAATGGTGACGG+AGG | 0.686062 | 2.2:-27718903 | MS.gene77163:CDS |
| ACCCTGAGTACGAGACACGA+GGG | 0.700568 | 2.2:+27721517 | None:intergenic |
| AGTAGTCTTGACATCCACAT+GGG | 0.706350 | 2.2:+27720093 | None:intergenic |
| AGAACAAGCGGATCTCTAAG+GGG | 0.721950 | 2.2:-27721731 | MS.gene77163:CDS |
| GGTTCATGGAGATTACTCTG+AGG | 0.741731 | 2.2:-27718951 | MS.gene77163:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATATTATGAAAATAAATAT+TGG | + | chr2.2:27721121-27721140 | None:intergenic | 10.0% |
| !!! | ATTTTTTTTTTTATTTACAG+GGG | - | chr2.2:27720444-27720463 | MS.gene77163:intron | 10.0% |
| !!! | GATTTTTTTTTTTATTTACA+GGG | - | chr2.2:27720443-27720462 | MS.gene77163:intron | 10.0% |
| !!! | TGATTTTTTTTTTTATTTAC+AGG | - | chr2.2:27720442-27720461 | MS.gene77163:intron | 10.0% |
| !! | GTAAAAAATGAAAATTTGAA+TGG | + | chr2.2:27718964-27718983 | None:intergenic | 15.0% |
| !!! | GTTTTTTGTTTTTTGTAATT+TGG | - | chr2.2:27719153-27719172 | MS.gene77163:intron | 15.0% |
| !!! | TAAGAGAATATTTCTTTTTT+TGG | + | chr2.2:27721404-27721423 | None:intergenic | 15.0% |
| !!! | TTGGTATAAAAATTGTTTTA+TGG | + | chr2.2:27719692-27719711 | None:intergenic | 15.0% |
| !! | ATATATAAAGAAGAAATCAC+TGG | - | chr2.2:27720771-27720790 | MS.gene77163:intron | 20.0% |
| !! | ATATTCAATGAAAGTAAGAT+AGG | + | chr2.2:27719222-27719241 | None:intergenic | 20.0% |
| !! | CTTAATGCTTATTTAGAAAA+TGG | - | chr2.2:27720196-27720215 | MS.gene77163:intron | 20.0% |
| !!! | AAAATCTTTTGACAAATTTC+TGG | - | chr2.2:27720350-27720369 | MS.gene77163:CDS | 20.0% |
| !!! | AAATCTTTTGACAAATTTCT+GGG | - | chr2.2:27720351-27720370 | MS.gene77163:CDS | 20.0% |
| !!! | ATTTGAATGGATTTTGAAAA+AGG | + | chr2.2:27718951-27718970 | None:intergenic | 20.0% |
| !!! | CAATACATTATTTCTAGTTT+TGG | - | chr2.2:27721480-27721499 | MS.gene77163:intron | 20.0% |
| !!! | TCTTGTCTTTTAAATAATGT+TGG | + | chr2.2:27719894-27719913 | None:intergenic | 20.0% |
| !!! | TTTGAATGGATTTTGAAAAA+GGG | + | chr2.2:27718950-27718969 | None:intergenic | 20.0% |
| ! | AAAAACAAAAAACATGACAG+AGG | + | chr2.2:27719146-27719165 | None:intergenic | 25.0% |
| ! | AAACCATTATAGAAAATGCA+AGG | + | chr2.2:27718993-27719012 | None:intergenic | 25.0% |
| ! | AACAGCATTTCATAAAAGAA+AGG | + | chr2.2:27720751-27720770 | None:intergenic | 25.0% |
| ! | AAGAAAATGTTGTCAAATAG+CGG | + | chr2.2:27719654-27719673 | None:intergenic | 25.0% |
| ! | AATAATCTGAAGGTTGTTTA+TGG | + | chr2.2:27721260-27721279 | None:intergenic | 25.0% |
| ! | ACAACATTATGACAAATAGA+TGG | + | chr2.2:27720394-27720413 | None:intergenic | 25.0% |
| ! | ACTTATAACCATCTAAAAAG+TGG | - | chr2.2:27721612-27721631 | MS.gene77163:intron | 25.0% |
| ! | ATATATTAGTGTATCCAACA+CGG | - | chr2.2:27720700-27720719 | MS.gene77163:intron | 25.0% |
| ! | ATTAAGCTATCTAAACAATC+AGG | + | chr2.2:27719255-27719274 | None:intergenic | 25.0% |
| ! | ATTATGACAAATAGATGGTT+CGG | + | chr2.2:27720389-27720408 | None:intergenic | 25.0% |
| ! | GAGAATAAAAATGAAGACAT+GGG | + | chr2.2:27719997-27720016 | None:intergenic | 25.0% |
| ! | TATCACCTGAATAAAAACTT+TGG | - | chr2.2:27721137-27721156 | MS.gene77163:intron | 25.0% |
| ! | TCTTACTTTCATTGAATATC+TGG | - | chr2.2:27719223-27719242 | MS.gene77163:intron | 25.0% |
| ! | TTAAGCTATCTAAACAATCA+GGG | + | chr2.2:27719254-27719273 | None:intergenic | 25.0% |
| ! | TTATTTCCATAATAGCCTAT+AGG | + | chr2.2:27719387-27719406 | None:intergenic | 25.0% |
| ! | TTGAACTTGTAATAATCTGA+AGG | + | chr2.2:27721270-27721289 | None:intergenic | 25.0% |
| !! | AAAAACTTTGGTTGTTACTT+TGG | - | chr2.2:27721149-27721168 | MS.gene77163:intron | 25.0% |
| !! | AAATATGTCTTAGTCTTTCA+TGG | - | chr2.2:27720138-27720157 | MS.gene77163:CDS | 25.0% |
| !! | AACAACCAAAGTTTTTATTC+AGG | + | chr2.2:27721145-27721164 | None:intergenic | 25.0% |
| !! | AAGCTAAAAGTTTTTCCTAT+AGG | - | chr2.2:27719369-27719388 | MS.gene77163:intron | 25.0% |
| !! | AATATGTCTTAGTCTTTCAT+GGG | - | chr2.2:27720139-27720158 | MS.gene77163:CDS | 25.0% |
| !! | AATTTTCCAAGATCAAACTT+GGG | + | chr2.2:27721047-27721066 | None:intergenic | 25.0% |
| !! | TAACACTACCCAATTTTAAA+AGG | + | chr2.2:27721350-27721369 | None:intergenic | 25.0% |
| !! | TTTCCTTGCATTTTCTATAA+TGG | - | chr2.2:27718987-27719006 | MS.gene77163:intron | 25.0% |
| !! | TTTGGAAAGTTTGAAGTAAT+TGG | + | chr2.2:27721218-27721237 | None:intergenic | 25.0% |
| !! | TTTGTCATAATGTTGTTTGT+TGG | - | chr2.2:27720398-27720417 | MS.gene77163:intron | 25.0% |
| !!! | ATCATGTTGCCTTTTAAAAT+TGG | - | chr2.2:27721338-27721357 | MS.gene77163:intron | 25.0% |
| !!! | GGTTTGATTTTGTTTCTATT+TGG | - | chr2.2:27721639-27721658 | MS.gene77163:intron | 25.0% |
| !!! | TCATGTTGCCTTTTAAAATT+GGG | - | chr2.2:27721339-27721358 | MS.gene77163:intron | 25.0% |
| !!! | TGATTGTTGTTTTATAAGTG+TGG | + | chr2.2:27719822-27719841 | None:intergenic | 25.0% |
| AATATCATACCAATCCTTCT+TGG | + | chr2.2:27719044-27719063 | None:intergenic | 30.0% | |
| AGAAAATGTTGTCAAATAGC+GGG | + | chr2.2:27719653-27719672 | None:intergenic | 30.0% | |
| CGAGAATAAAAATGAAGACA+TGG | + | chr2.2:27719998-27720017 | None:intergenic | 30.0% | |
| CTACTGATAATTACACATTG+AGG | - | chr2.2:27720546-27720565 | MS.gene77163:intron | 30.0% | |
| GAACATAAGTAACTAAGTGA+CGG | + | chr2.2:27719465-27719484 | None:intergenic | 30.0% | |
| GTTACTTATGTTCGTAGATA+CGG | - | chr2.2:27719472-27719491 | MS.gene77163:intron | 30.0% | |
| GTTGCTGAAATTTGATCAAT+TGG | - | chr2.2:27720162-27720181 | MS.gene77163:intron | 30.0% | |
| GTTTGATCTTGGAAAATTGA+TGG | - | chr2.2:27721049-27721068 | MS.gene77163:intron | 30.0% | |
| TAAGCTGAAAAAACATCTCA+TGG | - | chr2.2:27719404-27719423 | MS.gene77163:intron | 30.0% | |
| ! | ATATGTCTTAGTCTTTCATG+GGG | - | chr2.2:27720140-27720159 | MS.gene77163:CDS | 30.0% |
| ! | CAATTTTCCAAGATCAAACT+TGG | + | chr2.2:27721048-27721067 | None:intergenic | 30.0% |
| ! | GAAGGATTGGTATGATATTA+AGG | - | chr2.2:27719045-27719064 | MS.gene77163:intron | 30.0% |
| ! | GTTTTCACACAAGCATTTAT+TGG | + | chr2.2:27721311-27721330 | None:intergenic | 30.0% |
| ! | GTTTTTCCTATAGGCTATTA+TGG | - | chr2.2:27719378-27719397 | MS.gene77163:intron | 30.0% |
| ! | TTATACCAAAAAGCATATCG+TGG | - | chr2.2:27719703-27719722 | MS.gene77163:CDS | 30.0% |
| !! | AATGGATTTTGAAAAAGGGT+TGG | + | chr2.2:27718946-27718965 | None:intergenic | 30.0% |
| !! | CTTTAAGGATCTTCACTTTT+CGG | + | chr2.2:27721022-27721041 | None:intergenic | 30.0% |
| !! | GGTTTGATTTGTACATTGTT+AGG | - | chr2.2:27719174-27719193 | MS.gene77163:intron | 30.0% |
| AAATTCATTCCCGAGATGAT+TGG | - | chr2.2:27720942-27720961 | MS.gene77163:intron | 35.0% | |
| AACCATCTAAAAAGTGGCTT+TGG | - | chr2.2:27721618-27721637 | MS.gene77163:intron | 35.0% | |
| AACTTCCATTCTCATGTAAG+TGG | + | chr2.2:27720044-27720063 | None:intergenic | 35.0% | |
| AATTCATTCCCGAGATGATT+GGG | - | chr2.2:27720943-27720962 | MS.gene77163:intron | 35.0% | |
| ACAATCTAGTCAGATTAGAC+AGG | - | chr2.2:27720628-27720647 | MS.gene77163:intron | 35.0% | |
| AGATAGATATTTCGAGCAGA+GGG | + | chr2.2:27719780-27719799 | None:intergenic | 35.0% | |
| ATCCTGTGATTTGAAGGAAT+TGG | - | chr2.2:27720914-27720933 | MS.gene77163:intron | 35.0% | |
| ATTCTCATGTAAGTGGAAAG+AGG | + | chr2.2:27720037-27720056 | None:intergenic | 35.0% | |
| ATTTCACAACTGACAAACTG+AGG | - | chr2.2:27720471-27720490 | MS.gene77163:intron | 35.0% | |
| ATTTCTTAACATGTGCCCTA+AGG | + | chr2.2:27721381-27721400 | None:intergenic | 35.0% | |
| CGAAATATCTATCTAGCACT+GGG | - | chr2.2:27719786-27719805 | MS.gene77163:intron | 35.0% | |
| CTACGGATCTGAACAAATAA+AGG | + | chr2.2:27720861-27720880 | None:intergenic | 35.0% | |
| CTTCTAAACTTGTGCCTTAA+GGG | - | chr2.2:27721503-27721522 | MS.gene77163:intron | 35.0% | |
| CTTTCCAAAAGCTCTCTATT+CGG | - | chr2.2:27721229-27721248 | MS.gene77163:intron | 35.0% | |
| GACAAGAAAAAAGACTGAAC+TGG | - | chr2.2:27719907-27719926 | MS.gene77163:intron | 35.0% | |
| GTAGATCACATATCGCTATA+GGG | + | chr2.2:27719758-27719777 | None:intergenic | 35.0% | |
| TAGATAGATATTTCGAGCAG+AGG | + | chr2.2:27719781-27719800 | None:intergenic | 35.0% | |
| TCATGCTAAAAGAGAACAGA+AGG | + | chr2.2:27721569-27721588 | None:intergenic | 35.0% | |
| TCCTTGTAACCAAAACCAAT+GGG | + | chr2.2:27720113-27720132 | None:intergenic | 35.0% | |
| TCGAAATATCTATCTAGCAC+TGG | - | chr2.2:27719785-27719804 | MS.gene77163:intron | 35.0% | |
| TCTTTCCACTTACATGAGAA+TGG | - | chr2.2:27720036-27720055 | MS.gene77163:CDS | 35.0% | |
| TGAACTGGCATTATCATGAT+GGG | - | chr2.2:27719922-27719941 | MS.gene77163:intron | 35.0% | |
| TGATCTTGGAAAATTGATGG+AGG | - | chr2.2:27721052-27721071 | MS.gene77163:intron | 35.0% | |
| TTCCTTGTAACCAAAACCAA+TGG | + | chr2.2:27720114-27720133 | None:intergenic | 35.0% | |
| TTTCTTAACATGTGCCCTAA+GGG | + | chr2.2:27721380-27721399 | None:intergenic | 35.0% | |
| ! | ACATTGAGGATGTTTTGCAT+TGG | - | chr2.2:27720560-27720579 | MS.gene77163:intron | 35.0% |
| ! | CTTTATTTGTTCAGATCCGT+AGG | - | chr2.2:27720859-27720878 | MS.gene77163:intron | 35.0% |
| ! | TAGAGTGTTTGAGGTTTCAT+TGG | - | chr2.2:27720258-27720277 | MS.gene77163:intron | 35.0% |
| ! | TGTTTCTATTTGGTCCTTGT+AGG | - | chr2.2:27721649-27721668 | MS.gene77163:intron | 35.0% |
| ! | TTGTTCCACGATATGCTTTT+TGG | + | chr2.2:27719711-27719730 | None:intergenic | 35.0% |
| ! | TTTCATTGGCTGATCTTCAA+GGG | - | chr2.2:27720272-27720291 | MS.gene77163:CDS | 35.0% |
| !! | AATAATGTTGGTCTTGCTTG+TGG | + | chr2.2:27719882-27719901 | None:intergenic | 35.0% |
| !! | AATGTTAACTTGTGCCCTTA+AGG | + | chr2.2:27721520-27721539 | None:intergenic | 35.0% |
| !! | ATCCAACACATGTTTTAGGT+AGG | - | chr2.2:27720724-27720743 | MS.gene77163:intron | 35.0% |
| !! | TTTCTAAAGTATCGAGTCCA+GGG | - | chr2.2:27719960-27719979 | MS.gene77163:intron | 35.0% |
| !!! | AAATCACTGGTTTTGAACCT+AGG | - | chr2.2:27720784-27720803 | MS.gene77163:intron | 35.0% |
| !!! | AACCAAAGCCACTTTTTAGA+TGG | + | chr2.2:27721623-27721642 | None:intergenic | 35.0% |
| !!! | GCTATTTAACCCATTGGTTT+TGG | - | chr2.2:27720101-27720120 | MS.gene77163:CDS | 35.0% |
| !!! | TTTTCTAAAGTATCGAGTCC+AGG | - | chr2.2:27719959-27719978 | MS.gene77163:intron | 35.0% |
| AAAGCTCCCAAGTTTGATCT+TGG | - | chr2.2:27721038-27721057 | MS.gene77163:intron | 40.0% | |
| AACTGACAAACTGAGGTCAT+TGG | - | chr2.2:27720478-27720497 | MS.gene77163:intron | 40.0% | |
| AAGAACAAGCGGATCTCTAA+GGG | - | chr2.2:27718889-27718908 | MS.gene77163:CDS | 40.0% | |
| AATCTCCTTCCCAATCATCT+CGG | + | chr2.2:27720955-27720974 | None:intergenic | 40.0% | |
| ACCATGCATTCAGGAAGATT+AGG | - | chr2.2:27720302-27720321 | MS.gene77163:CDS | 40.0% | |
| ACCTAATCTTCCTGAATGCA+TGG | + | chr2.2:27720306-27720325 | None:intergenic | 40.0% | |
| AGAAGACAAAGCATGATCCT+AGG | + | chr2.2:27720804-27720823 | None:intergenic | 40.0% | |
| AGCATCATCCTGTGATTTGA+AGG | - | chr2.2:27720908-27720927 | MS.gene77163:intron | 40.0% | |
| AGCTATCTAAACAATCAGGG+AGG | + | chr2.2:27719251-27719270 | None:intergenic | 40.0% | |
| ATCCATTTGCCAAGAAGGAT+TGG | - | chr2.2:27719032-27719051 | MS.gene77163:intron | 40.0% | |
| ATTTGGTCCTTGTAGGTTCA+TGG | - | chr2.2:27721656-27721675 | MS.gene77163:intron | 40.0% | |
| CAAGCTCCAACAATTTCAGT+AGG | + | chr2.2:27721746-27721765 | None:intergenic | 40.0% | |
| CACTAAGTATACTCAGTCCA+AGG | + | chr2.2:27719522-27719541 | None:intergenic | 40.0% | |
| CTGAACTGGCATTATCATGA+TGG | - | chr2.2:27719921-27719940 | MS.gene77163:intron | 40.0% | |
| CTGACTAGATTGTGCATAAC+AGG | + | chr2.2:27720621-27720640 | None:intergenic | 40.0% | |
| CTTGTAGTGCAGAAAACAGT+GGG | - | chr2.2:27719584-27719603 | MS.gene77163:CDS | 40.0% | |
| GAATGACAGATTGCTTCAGA+TGG | - | chr2.2:27720226-27720245 | MS.gene77163:intron | 40.0% | |
| GACAGAGGAAAACAATACCT+TGG | + | chr2.2:27719131-27719150 | None:intergenic | 40.0% | |
| GACCAATTCCTTCAAATCAC+AGG | + | chr2.2:27720919-27720938 | None:intergenic | 40.0% | |
| GAGGAACCTACTGAAATTGT+TGG | - | chr2.2:27721737-27721756 | MS.gene77163:CDS | 40.0% | |
| GATCAAACTTGGGAGCTTTA+AGG | + | chr2.2:27721037-27721056 | None:intergenic | 40.0% | |
| GCTATCTAAACAATCAGGGA+GGG | + | chr2.2:27719250-27719269 | None:intergenic | 40.0% | |
| GCTTCTAAACTTGTGCCTTA+AGG | - | chr2.2:27721502-27721521 | MS.gene77163:intron | 40.0% | |
| GGTAGATCACATATCGCTAT+AGG | + | chr2.2:27719759-27719778 | None:intergenic | 40.0% | |
| GTAATCTCCATGAACCTACA+AGG | + | chr2.2:27721666-27721685 | None:intergenic | 40.0% | |
| GTCCTACCTAAAACATGTGT+TGG | + | chr2.2:27720729-27720748 | None:intergenic | 40.0% | |
| TAAGAACAAGCGGATCTCTA+AGG | - | chr2.2:27718888-27718907 | MS.gene77163:CDS | 40.0% | |
| TACCAATCCTTCTTGGCAAA+TGG | + | chr2.2:27719037-27719056 | None:intergenic | 40.0% | |
| TCAAATCACAGGATGATGCT+TGG | + | chr2.2:27720908-27720927 | None:intergenic | 40.0% | |
| TCATCTCGGGAATGAATTTG+CGG | + | chr2.2:27720941-27720960 | None:intergenic | 40.0% | |
| TCTTGTAGTGCAGAAAACAG+TGG | - | chr2.2:27719583-27719602 | MS.gene77163:CDS | 40.0% | |
| TGAGAGCTGAAGATGTTCAA+GGG | - | chr2.2:27720326-27720345 | MS.gene77163:CDS | 40.0% | |
| TGATCTCAACCATCTTCCTA+CGG | + | chr2.2:27720878-27720897 | None:intergenic | 40.0% | |
| TTCTTCACCTGGAAAACTGA+AGG | + | chr2.2:27719073-27719092 | None:intergenic | 40.0% | |
| TTGAGAGCTGAAGATGTTCA+AGG | - | chr2.2:27720325-27720344 | MS.gene77163:CDS | 40.0% | |
| ! | ACTCAAGCATAGAGTGTTTG+AGG | - | chr2.2:27720249-27720268 | MS.gene77163:intron | 40.0% |
| ! | AGTAGTCTTGACATCCACAT+GGG | + | chr2.2:27720531-27720550 | None:intergenic | 40.0% |
| ! | CGGTATCCAACACATGTTTT+AGG | - | chr2.2:27720720-27720739 | MS.gene77163:intron | 40.0% |
| ! | CTAGCTGCTATTTAACCCAT+TGG | - | chr2.2:27720095-27720114 | MS.gene77163:CDS | 40.0% |
| ! | GAAACCGAATAGAGAGCTTT+TGG | + | chr2.2:27721236-27721255 | None:intergenic | 40.0% |
| ! | GTTTCATTGGCTGATCTTCA+AGG | - | chr2.2:27720271-27720290 | MS.gene77163:CDS | 40.0% |
| ! | GTTTTCCAGGTGAAGAATGT+CGG | - | chr2.2:27719076-27719095 | MS.gene77163:intron | 40.0% |
| ! | TTCATTGGCTGATCTTCAAG+GGG | - | chr2.2:27720273-27720292 | MS.gene77163:CDS | 40.0% |
| !! | AGTGTTAACTTGTGCCCTTA+GGG | - | chr2.2:27721363-27721382 | MS.gene77163:intron | 40.0% |
| !! | CAATGGGTTAAATAGCAGCT+AGG | + | chr2.2:27720097-27720116 | None:intergenic | 40.0% |
| !! | TAGTGTTAACTTGTGCCCTT+AGG | - | chr2.2:27721362-27721381 | MS.gene77163:intron | 40.0% |
| !! | TTCTAAAGTATCGAGTCCAG+GGG | - | chr2.2:27719961-27719980 | MS.gene77163:intron | 40.0% |
| !! | TTGGTTGTTACTTTGGTCAC+TGG | - | chr2.2:27721156-27721175 | MS.gene77163:intron | 40.0% |
| !! | TTGTCAAATAGCGGGTAAAG+TGG | + | chr2.2:27719645-27719664 | None:intergenic | 40.0% |
| !! | TTTGCATTGGCTTTACCAAG+AGG | - | chr2.2:27720573-27720592 | MS.gene77163:intron | 40.0% |
| !!! | ACCCATTGGTTTTGGTTACA+AGG | - | chr2.2:27720109-27720128 | MS.gene77163:CDS | 40.0% |
| AACTCTTGTTGAAGCCCATG+TGG | - | chr2.2:27720514-27720533 | MS.gene77163:intron | 45.0% | |
| ACATGTGTTGGATACCGTGT+TGG | + | chr2.2:27720717-27720736 | None:intergenic | 45.0% | |
| ACTCAGTCCAAGGACATGTT+TGG | + | chr2.2:27719512-27719531 | None:intergenic | 45.0% | |
| AGAACAAGCGGATCTCTAAG+GGG | - | chr2.2:27718890-27718909 | MS.gene77163:CDS | 45.0% | |
| ATCTCCTTCCCAATCATCTC+GGG | + | chr2.2:27720954-27720973 | None:intergenic | 45.0% | |
| ATGTTGGCACAAAGGTAGAG+AGG | - | chr2.2:27721693-27721712 | MS.gene77163:intron | 45.0% | |
| CAAGGGGTAAATACTAGACG+TGG | + | chr2.2:27720985-27721004 | None:intergenic | 45.0% | |
| CGGATGAACACATTCTGCAA+GGG | + | chr2.2:27721002-27721021 | None:intergenic | 45.0% | |
| GATCCGCTTGTTCTTACCAA+CGG | + | chr2.2:27718884-27718903 | None:intergenic | 45.0% | |
| GGATGAACACATTCTGCAAG+GGG | + | chr2.2:27721001-27721020 | None:intergenic | 45.0% | |
| GGTTCATGGAGATTACTCTG+AGG | - | chr2.2:27721670-27721689 | MS.gene77163:intron | 45.0% | |
| GTCCAAGGACATGTTTGGAT+TGG | + | chr2.2:27719507-27719526 | None:intergenic | 45.0% | |
| TCGGATGAACACATTCTGCA+AGG | + | chr2.2:27721003-27721022 | None:intergenic | 45.0% | |
| TGCCAATCCAAACATGTCCT+TGG | - | chr2.2:27719502-27719521 | MS.gene77163:intron | 45.0% | |
| TGCTGATCCATTTGCCAAGA+AGG | - | chr2.2:27719027-27719046 | MS.gene77163:intron | 45.0% | |
| TGTTCAGATCCGTAGGAAGA+TGG | - | chr2.2:27720866-27720885 | MS.gene77163:intron | 45.0% | |
| ! | ATCTCTAAGGGGAAGAAAGG+TGG | - | chr2.2:27718901-27718920 | MS.gene77163:CDS | 45.0% |
| ! | CAGTAGTCTTGACATCCACA+TGG | + | chr2.2:27720532-27720551 | None:intergenic | 45.0% |
| ! | GGAGATTACTCTGAGGATGT+TGG | - | chr2.2:27721677-27721696 | MS.gene77163:intron | 45.0% |
| ! | TAAGGCTCCTTCAGTTTTCC+AGG | - | chr2.2:27719063-27719082 | MS.gene77163:intron | 45.0% |
| !! | ATATTATGAAAATAAATATT+GGG | + | chr2.2:27721120-27721139 | None:intergenic | 5.0% |
| !!! | AAACAAAATTAAAATTTTAA+AGG | + | chr2.2:27721545-27721564 | None:intergenic | 5.0% |
| !!! | AACAAAATTAAAATTTTAAA+GGG | + | chr2.2:27721544-27721563 | None:intergenic | 5.0% |
| AGAGAGGCCTGCTGATGAAA+TGG | - | chr2.2:27721709-27721728 | MS.gene77163:CDS | 50.0% | |
| CATAACAGGTCCTCTTCACC+TGG | + | chr2.2:27720607-27720626 | None:intergenic | 50.0% | |
| CATTCCCGAGATGATTGGGA+AGG | - | chr2.2:27720947-27720966 | MS.gene77163:intron | 50.0% | |
| GCCTGCTGATGAAATGGTGA+CGG | - | chr2.2:27721715-27721734 | MS.gene77163:CDS | 50.0% | |
| TACCAAGAGGAGAGCTAACC+AGG | - | chr2.2:27720586-27720605 | MS.gene77163:intron | 50.0% | |
| TCCGTCACCATTTCATCAGC+AGG | + | chr2.2:27721719-27721738 | None:intergenic | 50.0% | |
| TCTTGCCGACATTCTTCACC+TGG | + | chr2.2:27719084-27719103 | None:intergenic | 50.0% | |
| TGAGGTCATTGGTGCGTAAG+TGG | - | chr2.2:27720489-27720508 | MS.gene77163:intron | 50.0% | |
| ! | CGGATCTCTAAGGGGAAGAA+AGG | - | chr2.2:27718898-27718917 | MS.gene77163:CDS | 50.0% |
| ! | CTCTGAGGATGTTGGCACAA+AGG | - | chr2.2:27721685-27721704 | MS.gene77163:intron | 50.0% |
| ! | TGGCCGTTGGTAAGAACAAG+CGG | - | chr2.2:27718878-27718897 | MS.gene77163:CDS | 50.0% |
| !! | ATGTTGGTCTTGCTTGTGGC+AGG | + | chr2.2:27719878-27719897 | None:intergenic | 50.0% |
| !! | TGCTGATGAAATGGTGACGG+AGG | - | chr2.2:27721718-27721737 | MS.gene77163:CDS | 50.0% |
| !! | TGTTGGTCTTGCTTGTGGCA+GGG | + | chr2.2:27719877-27719896 | None:intergenic | 50.0% |
| ACCCTCGTGTCTCGTACTCA+GGG | - | chr2.2:27719103-27719122 | MS.gene77163:intron | 55.0% | |
| ACCCTGAGTACGAGACACGA+GGG | + | chr2.2:27719107-27719126 | None:intergenic | 55.0% | |
| CATGGGAATGTCATGTCCCC+TGG | + | chr2.2:27719980-27719999 | None:intergenic | 55.0% | |
| GGAGAGCTAACCAGGTGAAG+AGG | - | chr2.2:27720594-27720613 | MS.gene77163:intron | 55.0% | |
| GGGACGAAGACCATGCATTC+AGG | - | chr2.2:27720293-27720312 | MS.gene77163:CDS | 55.0% | |
| TACCCTGAGTACGAGACACG+AGG | + | chr2.2:27719108-27719127 | None:intergenic | 55.0% | |
| ! | CACCTGGTTAGCTCTCCTCT+TGG | + | chr2.2:27720591-27720610 | None:intergenic | 55.0% |
| ! | GTCTCGTACTCAGGGTACCA+AGG | - | chr2.2:27719111-27719130 | MS.gene77163:intron | 55.0% |
| CTTGTGGCAGGGCAGAAGTG+GGG | + | chr2.2:27719866-27719885 | None:intergenic | 60.0% | |
| GACCCTCGTGTCTCGTACTC+AGG | - | chr2.2:27719102-27719121 | MS.gene77163:intron | 60.0% | |
| GCTTGTGGCAGGGCAGAAGT+GGG | + | chr2.2:27719867-27719886 | None:intergenic | 60.0% | |
| TGCTTGTGGCAGGGCAGAAG+TGG | + | chr2.2:27719868-27719887 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.2 | gene | 27718877 | 27721766 | 27718877 | ID=MS.gene77163 |
| chr2.2 | mRNA | 27718877 | 27721766 | 27718877 | ID=MS.gene77163.t1;Parent=MS.gene77163 |
| chr2.2 | exon | 27721708 | 27721766 | 27721708 | ID=MS.gene77163.t1.exon1;Parent=MS.gene77163.t1 |
| chr2.2 | CDS | 27721708 | 27721766 | 27721708 | ID=cds.MS.gene77163.t1;Parent=MS.gene77163.t1 |
| chr2.2 | exon | 27721511 | 27721616 | 27721511 | ID=MS.gene77163.t1.exon2;Parent=MS.gene77163.t1 |
| chr2.2 | CDS | 27721511 | 27721616 | 27721511 | ID=cds.MS.gene77163.t1;Parent=MS.gene77163.t1 |
| chr2.2 | exon | 27720271 | 27720408 | 27720271 | ID=MS.gene77163.t1.exon3;Parent=MS.gene77163.t1 |
| chr2.2 | CDS | 27720271 | 27720408 | 27720271 | ID=cds.MS.gene77163.t1;Parent=MS.gene77163.t1 |
| chr2.2 | exon | 27719994 | 27720179 | 27719994 | ID=MS.gene77163.t1.exon4;Parent=MS.gene77163.t1 |
| chr2.2 | CDS | 27719994 | 27720179 | 27719994 | ID=cds.MS.gene77163.t1;Parent=MS.gene77163.t1 |
| chr2.2 | exon | 27719570 | 27719770 | 27719570 | ID=MS.gene77163.t1.exon5;Parent=MS.gene77163.t1 |
| chr2.2 | CDS | 27719570 | 27719770 | 27719570 | ID=cds.MS.gene77163.t1;Parent=MS.gene77163.t1 |
| chr2.2 | exon | 27718877 | 27718972 | 27718877 | ID=MS.gene77163.t1.exon6;Parent=MS.gene77163.t1 |
| chr2.2 | CDS | 27718877 | 27718972 | 27718877 | ID=cds.MS.gene77163.t1;Parent=MS.gene77163.t1 |
| Gene Sequence |
| Protein sequence |