AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene81099

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene81099.t1 MTR_1g103100 97.701 261 6 0 1 261 1 261 0.0 530
MS.gene81099.t1 MTR_3g012040 95.785 261 11 0 1 261 1 261 0.0 497
MS.gene81099.t1 MTR_5g006440 94.636 261 14 0 1 261 1 261 9.71e-179 492
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene81099.t1 AT3G04840 85.115 262 38 1 1 261 1 262 1.68e-163 453
MS.gene81099.t1 AT4G34670 85.496 262 37 1 1 261 1 262 4.36e-163 452

Find 78 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCAAACTTGGGAGCTTTA+AGG 0.168578 2.3:-32556958 None:intergenic
AATATCATACCAATCCTTCT+TGG 0.295389 2.3:-32555032 None:intergenic
ATTTGGTCCTTGTAGGTTCA+TGG 0.297913 2.3:+32557386 MS.gene81099:intron
GAAGGATTGGTATGATATTA+AGG 0.312711 2.3:+32555036 MS.gene81099:CDS
CTGACTAGATTGTGCATAAC+AGG 0.339955 2.3:-32556542 None:intergenic
AAAGCTCCCAAGTTTGATCT+TGG 0.357514 2.3:+32556962 MS.gene81099:CDS
TAAGAACAAGCGGATCTCTA+AGG 0.365175 2.3:+32554879 MS.gene81099:CDS
GTTTGATCTTGGAAAATTGA+TGG 0.369245 2.3:+32556973 MS.gene81099:CDS
AAATTCATTCCCGAGATGAT+TGG 0.381702 2.3:+32556866 MS.gene81099:CDS
GGGACGAAGACCATGCATTC+AGG 0.393353 2.3:+32556216 MS.gene81099:CDS
ATCCTGTGATTTGAAGGAAT+TGG 0.402781 2.3:+32556838 MS.gene81099:CDS
GACCCTCGTGTCTCGTACTC+AGG 0.406163 2.3:+32555093 MS.gene81099:CDS
TACCAATCCTTCTTGGCAAA+TGG 0.412105 2.3:-32555025 None:intergenic
TAGAGTGTTTGAGGTTTCAT+TGG 0.413434 2.3:+32556181 MS.gene81099:CDS
GTTTCATTGGCTGATCTTCA+AGG 0.434675 2.3:+32556194 MS.gene81099:CDS
TGCTGATCCATTTGCCAAGA+AGG 0.436339 2.3:+32555018 MS.gene81099:CDS
AATTCATTCCCGAGATGATT+GGG 0.437177 2.3:+32556867 MS.gene81099:CDS
AGCATCATCCTGTGATTTGA+AGG 0.439297 2.3:+32556832 MS.gene81099:CDS
TACCAAGAGGAGAGCTAACC+AGG 0.440122 2.3:+32556510 MS.gene81099:CDS
TCCGTCACCATTTCATCAGC+AGG 0.444686 2.3:-32557446 None:intergenic
ACTCAAGCATAGAGTGTTTG+AGG 0.454600 2.3:+32556172 MS.gene81099:CDS
ACCATGCATTCAGGAAGATT+AGG 0.462005 2.3:+32556225 MS.gene81099:CDS
ATCCATTTGCCAAGAAGGAT+TGG 0.465718 2.3:+32555023 MS.gene81099:CDS
ATCTCCTTCCCAATCATCTC+GGG 0.483111 2.3:-32556875 None:intergenic
GAGGAACCTACTGAAATTGT+TGG 0.484047 2.3:+32557467 MS.gene81099:CDS
TGTTCAGATCCGTAGGAAGA+TGG 0.490433 2.3:+32556790 MS.gene81099:intron
CACCTGGTTAGCTCTCCTCT+TGG 0.502596 2.3:-32556512 None:intergenic
AACTGACAAACTGAGGTCAT+TGG 0.506332 2.3:+32556402 MS.gene81099:CDS
TGAGGTCATTGGTGCGTAAG+TGG 0.507827 2.3:+32556413 MS.gene81099:CDS
CGGATCTCTAAGGGGAAGAA+AGG 0.516719 2.3:+32554889 MS.gene81099:CDS
AAGAACAAGCGGATCTCTAA+GGG 0.521243 2.3:+32554880 MS.gene81099:CDS
CTTGTTCTTACCAACGGCCA+TGG 0.523346 2.3:-32554866 None:intergenic
ACCTAATCTTCCTGAATGCA+TGG 0.523822 2.3:-32556226 None:intergenic
TTTCATTGGCTGATCTTCAA+GGG 0.523908 2.3:+32556195 MS.gene81099:CDS
TCATCTCGGGAATGAATTTG+CGG 0.528925 2.3:-32556862 None:intergenic
AGAGAGGCCTGCTGATGAAA+TGG 0.532099 2.3:+32557439 MS.gene81099:CDS
TCTTGCCGACATTCTTCACC+TGG 0.534041 2.3:-32555072 None:intergenic
AATCTCCTTCCCAATCATCT+CGG 0.535678 2.3:-32556876 None:intergenic
TTGAGAGCTGAAGATGTTCA+AGG 0.537527 2.3:+32556248 MS.gene81099:CDS
CGGATGAACACATTCTGCAA+GGG 0.539130 2.3:-32556923 None:intergenic
TCAAATCACAGGATGATGCT+TGG 0.544201 2.3:-32556829 None:intergenic
CATAACAGGTCCTCTTCACC+TGG 0.545447 2.3:-32556528 None:intergenic
GGAGAGCTAACCAGGTGAAG+AGG 0.557404 2.3:+32556518 MS.gene81099:CDS
GAATGACAGATTGCTTCAGA+TGG 0.560187 2.3:+32556149 MS.gene81099:intron
CTCTGAGGATGTTGGCACAA+AGG 0.562498 2.3:+32557415 MS.gene81099:CDS
CTTTATTTGTTCAGATCCGT+AGG 0.563835 2.3:+32556783 MS.gene81099:intron
GATCCGCTTGTTCTTACCAA+CGG 0.569816 2.3:-32554872 None:intergenic
GACCAATTCCTTCAAATCAC+AGG 0.574407 2.3:-32556840 None:intergenic
TCGGATGAACACATTCTGCA+AGG 0.575354 2.3:-32556924 None:intergenic
ACAATCTAGTCAGATTAGAC+AGG 0.580594 2.3:+32556552 MS.gene81099:CDS
CAAGCTCCAACAATTTCAGT+AGG 0.582102 2.3:-32557473 None:intergenic
GGAGATTACTCTGAGGATGT+TGG 0.587473 2.3:+32557407 MS.gene81099:CDS
TTCTTCACCTGGAAAACTGA+AGG 0.588083 2.3:-32555061 None:intergenic
TGATCTCAACCATCTTCCTA+CGG 0.590794 2.3:-32556799 None:intergenic
TTCATTGGCTGATCTTCAAG+GGG 0.595752 2.3:+32556196 MS.gene81099:CDS
CAGTAGTCTTGACATCCACA+TGG 0.596992 2.3:-32556453 None:intergenic
AACAGTGAAACCATGGCCGT+TGG 0.599680 2.3:+32554856 None:intergenic
CATTCCCGAGATGATTGGGA+AGG 0.605231 2.3:+32556871 MS.gene81099:CDS
TGATCTTGGAAAATTGATGG+AGG 0.612140 2.3:+32556976 MS.gene81099:CDS
TGAGAGCTGAAGATGTTCAA+GGG 0.612312 2.3:+32556249 MS.gene81099:CDS
ACCCTCGTGTCTCGTACTCA+GGG 0.615233 2.3:+32555094 MS.gene81099:CDS
ATCTCTAAGGGGAAGAAAGG+TGG 0.621403 2.3:+32554892 MS.gene81099:CDS
AACTCTTGTTGAAGCCCATG+TGG 0.622205 2.3:+32556438 MS.gene81099:CDS
GTCTCGTACTCAGGGTACCA+AGG 0.623684 2.3:+32555102 MS.gene81099:CDS
TGGCCGTTGGTAAGAACAAG+CGG 0.624911 2.3:+32554869 MS.gene81099:CDS
GCCTGCTGATGAAATGGTGA+CGG 0.629382 2.3:+32557445 MS.gene81099:CDS
GGATGAACACATTCTGCAAG+GGG 0.631103 2.3:-32556922 None:intergenic
CAAGGGGTAAATACTAGACG+TGG 0.633754 2.3:-32556906 None:intergenic
CTACTGATAATTACACATTG+AGG 0.636083 2.3:+32556470 MS.gene81099:CDS
TTTGCATTGGCTTTACCAAG+AGG 0.642280 2.3:+32556497 MS.gene81099:CDS
TACCCTGAGTACGAGACACG+AGG 0.648373 2.3:-32555096 None:intergenic
ATGTTGGCACAAAGGTAGAG+AGG 0.654238 2.3:+32557423 MS.gene81099:CDS
ATTTCACAACTGACAAACTG+AGG 0.681977 2.3:+32556395 MS.gene81099:CDS
TGCTGATGAAATGGTGACGG+AGG 0.686062 2.3:+32557448 MS.gene81099:CDS
ACCCTGAGTACGAGACACGA+GGG 0.700568 2.3:-32555095 None:intergenic
AGTAGTCTTGACATCCACAT+GGG 0.706350 2.3:-32556452 None:intergenic
AGAACAAGCGGATCTCTAAG+GGG 0.721950 2.3:+32554881 MS.gene81099:CDS
GGTTCATGGAGATTACTCTG+AGG 0.741731 2.3:+32557400 MS.gene81099:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATATTATGAAAATAAATAT+TGG - chr2.3:32557045-32557064 None:intergenic 10.0%
!!! ATTTTTTATTTTATTTACAG+GGG + chr2.3:32556368-32556387 MS.gene81099:intron 10.0%
!!! GATTTTTTATTTTATTTACA+GGG + chr2.3:32556367-32556386 MS.gene81099:intron 10.0%
!!! TGATTTTTTATTTTATTTAC+AGG + chr2.3:32556366-32556385 MS.gene81099:intron 10.0%
!!! TTAGTATAAAAATTGTTTTA+TGG - chr2.3:32555615-32555634 None:intergenic 10.0%
!! GTAAAAAATGAAAATTTGAA+TGG - chr2.3:32554955-32554974 None:intergenic 15.0%
!! AAAAAAATGTTGTCAAATAG+CGG - chr2.3:32555578-32555597 None:intergenic 20.0%
!! ATATATAAAGAAGAAATCAC+TGG + chr2.3:32556695-32556714 MS.gene81099:intron 20.0%
!! ATATTCAATGAAAGTAAGAT+AGG - chr2.3:32555206-32555225 None:intergenic 20.0%
!! CTTAATGCTTATTTAGAAAA+TGG + chr2.3:32556119-32556138 MS.gene81099:intron 20.0%
!!! AAAATCTTTTGACAAATTTC+TGG + chr2.3:32556273-32556292 MS.gene81099:CDS 20.0%
!!! AAATCTTTTGACAAATTTCT+GGG + chr2.3:32556274-32556293 MS.gene81099:CDS 20.0%
!!! ATTTGAATGGATTTTGAAAA+AGG - chr2.3:32554942-32554961 None:intergenic 20.0%
!!! TCTTGTCTTTTAAATAATGT+TGG - chr2.3:32555817-32555836 None:intergenic 20.0%
!!! TTTGAATGGATTTTGAAAAA+GGG - chr2.3:32554941-32554960 None:intergenic 20.0%
! AAAAAATGTTGTCAAATAGC+GGG - chr2.3:32555577-32555596 None:intergenic 25.0%
! AAACCATTATAGAAAATGCA+AGG - chr2.3:32554984-32555003 None:intergenic 25.0%
! AACAGCATTTCATAAAAGAA+AGG - chr2.3:32556675-32556694 None:intergenic 25.0%
! AATAATCTGAAGGTTGTTTA+TGG - chr2.3:32557184-32557203 None:intergenic 25.0%
! AATTACAAAAAACATGACAG+AGG - chr2.3:32555137-32555156 None:intergenic 25.0%
! ACAACATTATGACAAATAGA+TGG - chr2.3:32556317-32556336 None:intergenic 25.0%
! ACTTTCATTGAATATCTATC+TGG + chr2.3:32555211-32555230 MS.gene81099:intron 25.0%
! ATATATTAGTGTATCCAACA+CGG + chr2.3:32556624-32556643 MS.gene81099:intron 25.0%
! ATTAAGCTATCTAAACAATC+AGG - chr2.3:32555243-32555262 None:intergenic 25.0%
! ATTATGACAAATAGATGGTT+CGG - chr2.3:32556312-32556331 None:intergenic 25.0%
! GAGAATAAAAATGAAGACAT+GGG - chr2.3:32555920-32555939 None:intergenic 25.0%
! GTTGCTGAAATTTGATAAAT+TGG + chr2.3:32556085-32556104 MS.gene81099:intron 25.0%
! TATCACCTGAATAAAAACTT+TGG + chr2.3:32557061-32557080 MS.gene81099:intron 25.0%
! TTAAGCTATCTAAACAATCA+GGG - chr2.3:32555242-32555261 None:intergenic 25.0%
! TTATTTCCATAATAGCCTAT+AGG - chr2.3:32555378-32555397 None:intergenic 25.0%
! TTGAACTTGTAATAATCTGA+AGG - chr2.3:32557194-32557213 None:intergenic 25.0%
!! AAAAACTTTGGTTGTTACTT+TGG + chr2.3:32557073-32557092 MS.gene81099:intron 25.0%
!! AAATATGTCTTAGTCTTTCA+TGG + chr2.3:32556061-32556080 MS.gene81099:intron 25.0%
!! AACAACCAAAGTTTTTATTC+AGG - chr2.3:32557069-32557088 None:intergenic 25.0%
!! AAGCTAAAAGTTTTTCCTAT+AGG + chr2.3:32555360-32555379 MS.gene81099:intron 25.0%
!! AATATGTCTTAGTCTTTCAT+GGG + chr2.3:32556062-32556081 MS.gene81099:intron 25.0%
!! AATTTTCCAAGATCAAACTT+GGG - chr2.3:32556971-32556990 None:intergenic 25.0%
!! TTATACTAAAAAGCATATCG+TGG + chr2.3:32555626-32555645 MS.gene81099:intron 25.0%
!! TTTCCTTGCATTTTCTATAA+TGG + chr2.3:32554978-32554997 MS.gene81099:intron 25.0%
!! TTTGGAAAGTTTGAAGTAAT+TGG - chr2.3:32557142-32557161 None:intergenic 25.0%
!! TTTGTCATAATGTTGTTTGT+TGG + chr2.3:32556321-32556340 MS.gene81099:intron 25.0%
!!! CTGTCATGTTTTTTGTAATT+TGG + chr2.3:32555137-32555156 MS.gene81099:intron 25.0%
!!! GGTTTGATTTTGTTTCTATT+TGG + chr2.3:32557369-32557388 MS.gene81099:intron 25.0%
!!! TGATTGTTGTTTTATAAGTG+TGG - chr2.3:32555745-32555764 None:intergenic 25.0%
AATATCATACCAATCCTTCT+TGG - chr2.3:32555035-32555054 None:intergenic 30.0%
ACTATAATGTCACTAAGTGA+CGG - chr2.3:32555456-32555475 None:intergenic 30.0%
ACTTGTAACCATCTAAAAAG+TGG + chr2.3:32557342-32557361 MS.gene81099:intron 30.0%
CGAGAATAAAAATGAAGACA+TGG - chr2.3:32555921-32555940 None:intergenic 30.0%
CTACTGATAATTACACATTG+AGG + chr2.3:32556470-32556489 MS.gene81099:CDS 30.0%
GTTTGATCTTGGAAAATTGA+TGG + chr2.3:32556973-32556992 MS.gene81099:CDS 30.0%
TAAGCTGAAAAAACATCTCA+TGG + chr2.3:32555395-32555414 MS.gene81099:intron 30.0%
TCATGCTAAAAGAGAACATA+AGG - chr2.3:32557299-32557318 None:intergenic 30.0%
! ATATGTCTTAGTCTTTCATG+GGG + chr2.3:32556063-32556082 MS.gene81099:intron 30.0%
! CAATTTTCCAAGATCAAACT+TGG - chr2.3:32556972-32556991 None:intergenic 30.0%
! GAAGGATTGGTATGATATTA+AGG + chr2.3:32555036-32555055 MS.gene81099:CDS 30.0%
! GTTTTCACACAAGCATTTAT+TGG - chr2.3:32557235-32557254 None:intergenic 30.0%
! GTTTTTCCTATAGGCTATTA+TGG + chr2.3:32555369-32555388 MS.gene81099:intron 30.0%
!! AATGGATTTTGAAAAAGGGT+TGG - chr2.3:32554937-32554956 None:intergenic 30.0%
!! CTTTAAGGATCTTCACTTTT+CGG - chr2.3:32556946-32556965 None:intergenic 30.0%
!! GGTTTGATTTGTACATTGTT+AGG + chr2.3:32555158-32555177 MS.gene81099:intron 30.0%
!!! TCTATTTAACCCATTGGTTT+TGG + chr2.3:32556024-32556043 MS.gene81099:intron 30.0%
AAATTCATTCCCGAGATGAT+TGG + chr2.3:32556866-32556885 MS.gene81099:CDS 35.0%
AACCATCTAAAAAGTGGCTT+TGG + chr2.3:32557348-32557367 MS.gene81099:intron 35.0%
AACTTCCATTCTCATGTAAG+TGG - chr2.3:32555967-32555986 None:intergenic 35.0%
AATTCATTCCCGAGATGATT+GGG + chr2.3:32556867-32556886 MS.gene81099:CDS 35.0%
ACAATCTAGTCAGATTAGAC+AGG + chr2.3:32556552-32556571 MS.gene81099:CDS 35.0%
AGATAGATATTTCGAGCAGA+GGG - chr2.3:32555703-32555722 None:intergenic 35.0%
ATCCTGTGATTTGAAGGAAT+TGG + chr2.3:32556838-32556857 MS.gene81099:CDS 35.0%
ATTCTCATGTAAGTGGAAAG+AGG - chr2.3:32555960-32555979 None:intergenic 35.0%
ATTTCACAACTGACAAACTG+AGG + chr2.3:32556395-32556414 MS.gene81099:CDS 35.0%
CGAAATATCTATCTAGCACT+GGG + chr2.3:32555709-32555728 MS.gene81099:intron 35.0%
CTACGGATCTGAACAAATAA+AGG - chr2.3:32556785-32556804 None:intergenic 35.0%
CTAGCTTCTATTTAACCCAT+TGG + chr2.3:32556018-32556037 MS.gene81099:intron 35.0%
CTTTCCAAAAGCTCTCTATT+CGG + chr2.3:32557153-32557172 MS.gene81099:intron 35.0%
GACAAGAAAAAAGACTGAAC+TGG + chr2.3:32555830-32555849 MS.gene81099:intron 35.0%
GTAGATCACATATCGCTATA+GGG - chr2.3:32555681-32555700 None:intergenic 35.0%
TAGATAGATATTTCGAGCAG+AGG - chr2.3:32555704-32555723 None:intergenic 35.0%
TCCTTGTAACCAAAACCAAT+GGG - chr2.3:32556036-32556055 None:intergenic 35.0%
TCGAAATATCTATCTAGCAC+TGG + chr2.3:32555708-32555727 MS.gene81099:intron 35.0%
TCTTTCCACTTACATGAGAA+TGG + chr2.3:32555959-32555978 MS.gene81099:intron 35.0%
TGAACTGGCATTATCATGAT+GGG + chr2.3:32555845-32555864 MS.gene81099:intron 35.0%
TGATCTTGGAAAATTGATGG+AGG + chr2.3:32556976-32556995 MS.gene81099:CDS 35.0%
TTCCTTGTAACCAAAACCAA+TGG - chr2.3:32556037-32556056 None:intergenic 35.0%
! ACATTGAGGATGTTTTGCAT+TGG + chr2.3:32556484-32556503 MS.gene81099:CDS 35.0%
! CTTTATTTGTTCAGATCCGT+AGG + chr2.3:32556783-32556802 MS.gene81099:intron 35.0%
! TAGAGTGTTTGAGGTTTCAT+TGG + chr2.3:32556181-32556200 MS.gene81099:CDS 35.0%
! TGTTTCTATTTGGTCCTTGT+AGG + chr2.3:32557379-32557398 MS.gene81099:intron 35.0%
! TTTCATTGGCTGATCTTCAA+GGG + chr2.3:32556195-32556214 MS.gene81099:CDS 35.0%
!! AATAATGTTGGTCTTGCTTG+TGG - chr2.3:32555805-32555824 None:intergenic 35.0%
!! ATCCAACACATGTTTTAGGT+AGG + chr2.3:32556648-32556667 MS.gene81099:intron 35.0%
!! CAATGGGTTAAATAGAAGCT+AGG - chr2.3:32556020-32556039 None:intergenic 35.0%
!! TTTCTAAAGTATCGACTCCA+GGG + chr2.3:32555883-32555902 MS.gene81099:intron 35.0%
!!! AAATCACTGGTTTTGAACCT+AGG + chr2.3:32556708-32556727 MS.gene81099:intron 35.0%
!!! AACCAAAGCCACTTTTTAGA+TGG - chr2.3:32557353-32557372 None:intergenic 35.0%
!!! TTTTCTAAAGTATCGACTCC+AGG + chr2.3:32555882-32555901 MS.gene81099:intron 35.0%
AAAGCTCCCAAGTTTGATCT+TGG + chr2.3:32556962-32556981 MS.gene81099:CDS 40.0%
AACTGACAAACTGAGGTCAT+TGG + chr2.3:32556402-32556421 MS.gene81099:CDS 40.0%
AAGAACAAGCGGATCTCTAA+GGG + chr2.3:32554880-32554899 MS.gene81099:CDS 40.0%
AATCTCCTTCCCAATCATCT+CGG - chr2.3:32556879-32556898 None:intergenic 40.0%
ACCATGCATTCAGGAAGATT+AGG + chr2.3:32556225-32556244 MS.gene81099:CDS 40.0%
ACCTAATCTTCCTGAATGCA+TGG - chr2.3:32556229-32556248 None:intergenic 40.0%
AGAAGACAAAGCATGATCCT+AGG - chr2.3:32556728-32556747 None:intergenic 40.0%
AGCATCATCCTGTGATTTGA+AGG + chr2.3:32556832-32556851 MS.gene81099:CDS 40.0%
AGCTATCTAAACAATCAGGG+AGG - chr2.3:32555239-32555258 None:intergenic 40.0%
ATCCATTTGCCAAGAAGGAT+TGG + chr2.3:32555023-32555042 MS.gene81099:CDS 40.0%
ATTTGGTCCTTGTAGGTTCA+TGG + chr2.3:32557386-32557405 MS.gene81099:intron 40.0%
CAAGCTCCAACAATTTCAGT+AGG - chr2.3:32557476-32557495 None:intergenic 40.0%
CTGAACTGGCATTATCATGA+TGG + chr2.3:32555844-32555863 MS.gene81099:intron 40.0%
CTGACTAGATTGTGCATAAC+AGG - chr2.3:32556545-32556564 None:intergenic 40.0%
GAATGACAGATTGCTTCAGA+TGG + chr2.3:32556149-32556168 MS.gene81099:intron 40.0%
GACAGAGGAAAACAATACCT+TGG - chr2.3:32555122-32555141 None:intergenic 40.0%
GACCAATTCCTTCAAATCAC+AGG - chr2.3:32556843-32556862 None:intergenic 40.0%
GAGGAACCTACTGAAATTGT+TGG + chr2.3:32557467-32557486 MS.gene81099:CDS 40.0%
GATCAAACTTGGGAGCTTTA+AGG - chr2.3:32556961-32556980 None:intergenic 40.0%
GCTATCTAAACAATCAGGGA+GGG - chr2.3:32555238-32555257 None:intergenic 40.0%
GGTAGATCACATATCGCTAT+AGG - chr2.3:32555682-32555701 None:intergenic 40.0%
GTAATCTCCATGAACCTACA+AGG - chr2.3:32557396-32557415 None:intergenic 40.0%
GTCCTACCTAAAACATGTGT+TGG - chr2.3:32556653-32556672 None:intergenic 40.0%
TAAGAACAAGCGGATCTCTA+AGG + chr2.3:32554879-32554898 MS.gene81099:CDS 40.0%
TACCAATCCTTCTTGGCAAA+TGG - chr2.3:32555028-32555047 None:intergenic 40.0%
TCAAATCACAGGATGATGCT+TGG - chr2.3:32556832-32556851 None:intergenic 40.0%
TCATCTCGGGAATGAATTTG+CGG - chr2.3:32556865-32556884 None:intergenic 40.0%
TCTTGTAGTGCAGAAAACAG+CGG + chr2.3:32555507-32555526 MS.gene81099:intron 40.0%
TGAGAGCTGAAGATGTTCAA+GGG + chr2.3:32556249-32556268 MS.gene81099:CDS 40.0%
TGATCTCAACCATCTTCCTA+CGG - chr2.3:32556802-32556821 None:intergenic 40.0%
TTCTTCACCTGGAAAACTGA+AGG - chr2.3:32555064-32555083 None:intergenic 40.0%
TTGAGAGCTGAAGATGTTCA+AGG + chr2.3:32556248-32556267 MS.gene81099:CDS 40.0%
! ACTCAAGCATAGAGTGTTTG+AGG + chr2.3:32556172-32556191 MS.gene81099:CDS 40.0%
! AGTAGTCTTGACATCCACAT+GGG - chr2.3:32556455-32556474 None:intergenic 40.0%
! CGGTATCCAACACATGTTTT+AGG + chr2.3:32556644-32556663 MS.gene81099:intron 40.0%
! GAAACCGAATAGAGAGCTTT+TGG - chr2.3:32557160-32557179 None:intergenic 40.0%
! GTTTCATTGGCTGATCTTCA+AGG + chr2.3:32556194-32556213 MS.gene81099:CDS 40.0%
! GTTTTCCAGGTGAAGAATGT+CGG + chr2.3:32555067-32555086 MS.gene81099:CDS 40.0%
! TTCATTGGCTGATCTTCAAG+GGG + chr2.3:32556196-32556215 MS.gene81099:CDS 40.0%
!! TTCTAAAGTATCGACTCCAG+GGG + chr2.3:32555884-32555903 MS.gene81099:intron 40.0%
!! TTGGTTGTTACTTTGGTCAC+TGG + chr2.3:32557080-32557099 MS.gene81099:intron 40.0%
!! TTGTCAAATAGCGGGTAAAG+TGG - chr2.3:32555569-32555588 None:intergenic 40.0%
!! TTTGCATTGGCTTTACCAAG+AGG + chr2.3:32556497-32556516 MS.gene81099:CDS 40.0%
!!! ACCCATTGGTTTTGGTTACA+AGG + chr2.3:32556032-32556051 MS.gene81099:intron 40.0%
AACTCTTGTTGAAGCCCATG+TGG + chr2.3:32556438-32556457 MS.gene81099:CDS 45.0%
ACATGTGTTGGATACCGTGT+TGG - chr2.3:32556641-32556660 None:intergenic 45.0%
AGAACAAGCGGATCTCTAAG+GGG + chr2.3:32554881-32554900 MS.gene81099:CDS 45.0%
ATCTCCTTCCCAATCATCTC+GGG - chr2.3:32556878-32556897 None:intergenic 45.0%
ATGTTGGCACAAAGGTAGAG+AGG + chr2.3:32557423-32557442 MS.gene81099:CDS 45.0%
CAAGGGGTAAATACTAGACG+TGG - chr2.3:32556909-32556928 None:intergenic 45.0%
CGGATGAACACATTCTGCAA+GGG - chr2.3:32556926-32556945 None:intergenic 45.0%
CTTGTAGTGCAGAAAACAGC+GGG + chr2.3:32555508-32555527 MS.gene81099:intron 45.0%
GATCCGCTTGTTCTTACCAA+CGG - chr2.3:32554875-32554894 None:intergenic 45.0%
GGATGAACACATTCTGCAAG+GGG - chr2.3:32556925-32556944 None:intergenic 45.0%
GGTTCATGGAGATTACTCTG+AGG + chr2.3:32557400-32557419 MS.gene81099:intron 45.0%
TCGGATGAACACATTCTGCA+AGG - chr2.3:32556927-32556946 None:intergenic 45.0%
TGCTGATCCATTTGCCAAGA+AGG + chr2.3:32555018-32555037 MS.gene81099:CDS 45.0%
TGTTCAGATCCGTAGGAAGA+TGG + chr2.3:32556790-32556809 MS.gene81099:intron 45.0%
! ATCTCTAAGGGGAAGAAAGG+TGG + chr2.3:32554892-32554911 MS.gene81099:CDS 45.0%
! CAGTAGTCTTGACATCCACA+TGG - chr2.3:32556456-32556475 None:intergenic 45.0%
! GGAGATTACTCTGAGGATGT+TGG + chr2.3:32557407-32557426 MS.gene81099:CDS 45.0%
! TAAGGCTCCTTCAGTTTTCC+AGG + chr2.3:32555054-32555073 MS.gene81099:CDS 45.0%
!! ATATTATGAAAATAAATATT+GGG - chr2.3:32557044-32557063 None:intergenic 5.0%
!!! AACAAAATTAAAATTTTAAA+AGG - chr2.3:32557274-32557293 None:intergenic 5.0%
AGAGAGGCCTGCTGATGAAA+TGG + chr2.3:32557439-32557458 MS.gene81099:CDS 50.0%
CATAACAGGTCCTCTTCACC+TGG - chr2.3:32556531-32556550 None:intergenic 50.0%
CATTCCCGAGATGATTGGGA+AGG + chr2.3:32556871-32556890 MS.gene81099:CDS 50.0%
GCCTGCTGATGAAATGGTGA+CGG + chr2.3:32557445-32557464 MS.gene81099:CDS 50.0%
TACCAAGAGGAGAGCTAACC+AGG + chr2.3:32556510-32556529 MS.gene81099:CDS 50.0%
TCCGTCACCATTTCATCAGC+AGG - chr2.3:32557449-32557468 None:intergenic 50.0%
TCTTGCCGACATTCTTCACC+TGG - chr2.3:32555075-32555094 None:intergenic 50.0%
TGAGGTCATTGGTGCGTAAG+TGG + chr2.3:32556413-32556432 MS.gene81099:CDS 50.0%
! CGGATCTCTAAGGGGAAGAA+AGG + chr2.3:32554889-32554908 MS.gene81099:CDS 50.0%
! CTCTGAGGATGTTGGCACAA+AGG + chr2.3:32557415-32557434 MS.gene81099:CDS 50.0%
! TGGCCGTTGGTAAGAACAAG+CGG + chr2.3:32554869-32554888 MS.gene81099:CDS 50.0%
!! ATGTTGGTCTTGCTTGTGGC+AGG - chr2.3:32555801-32555820 None:intergenic 50.0%
!! TGCTGATGAAATGGTGACGG+AGG + chr2.3:32557448-32557467 MS.gene81099:CDS 50.0%
!! TGTTGGTCTTGCTTGTGGCA+GGG - chr2.3:32555800-32555819 None:intergenic 50.0%
ACCCTCGTGTCTCGTACTCA+GGG + chr2.3:32555094-32555113 MS.gene81099:CDS 55.0%
ACCCTGAGTACGAGACACGA+GGG - chr2.3:32555098-32555117 None:intergenic 55.0%
CATGGGAATGTCATGTCCCC+TGG - chr2.3:32555903-32555922 None:intergenic 55.0%
GGAGAGCTAACCAGGTGAAG+AGG + chr2.3:32556518-32556537 MS.gene81099:CDS 55.0%
GGGACGAAGACCATGCATTC+AGG + chr2.3:32556216-32556235 MS.gene81099:CDS 55.0%
TACCCTGAGTACGAGACACG+AGG - chr2.3:32555099-32555118 None:intergenic 55.0%
! CACCTGGTTAGCTCTCCTCT+TGG - chr2.3:32556515-32556534 None:intergenic 55.0%
! GTCTCGTACTCAGGGTACCA+AGG + chr2.3:32555102-32555121 MS.gene81099:CDS 55.0%
CTTGTGGCAGGGCAGAAGTG+GGG - chr2.3:32555789-32555808 None:intergenic 60.0%
GACCCTCGTGTCTCGTACTC+AGG + chr2.3:32555093-32555112 MS.gene81099:CDS 60.0%
GCTTGTGGCAGGGCAGAAGT+GGG - chr2.3:32555790-32555809 None:intergenic 60.0%
TGCTTGTGGCAGGGCAGAAG+TGG - chr2.3:32555791-32555810 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 32554868 32557496 32554868 ID=MS.gene81099
chr2.3 mRNA 32554868 32557496 32554868 ID=MS.gene81099.t1;Parent=MS.gene81099
chr2.3 exon 32554868 32554926 32554868 ID=MS.gene81099.t1.exon1;Parent=MS.gene81099.t1
chr2.3 CDS 32554868 32554926 32554868 ID=cds.MS.gene81099.t1;Parent=MS.gene81099.t1
chr2.3 exon 32555018 32555123 32555018 ID=MS.gene81099.t1.exon2;Parent=MS.gene81099.t1
chr2.3 CDS 32555018 32555123 32555018 ID=cds.MS.gene81099.t1;Parent=MS.gene81099.t1
chr2.3 exon 32556158 32556295 32556158 ID=MS.gene81099.t1.exon3;Parent=MS.gene81099.t1
chr2.3 CDS 32556158 32556295 32556158 ID=cds.MS.gene81099.t1;Parent=MS.gene81099.t1
chr2.3 exon 32556388 32556573 32556388 ID=MS.gene81099.t1.exon4;Parent=MS.gene81099.t1
chr2.3 CDS 32556388 32556573 32556388 ID=cds.MS.gene81099.t1;Parent=MS.gene81099.t1
chr2.3 exon 32556797 32556997 32556797 ID=MS.gene81099.t1.exon5;Parent=MS.gene81099.t1
chr2.3 CDS 32556797 32556997 32556797 ID=cds.MS.gene81099.t1;Parent=MS.gene81099.t1
chr2.3 exon 32557401 32557496 32557401 ID=MS.gene81099.t1.exon6;Parent=MS.gene81099.t1
chr2.3 CDS 32557401 32557496 32557401 ID=cds.MS.gene81099.t1;Parent=MS.gene81099.t1
Gene Sequence

>MS.gene81099

ATGGCCGTTGGTAAGAACAAGCGGATCTCTAAGGGGAAGAAAGGTGGCAAGAAGAAAGCGTTAGTACCAACCCTTTTTCAAAATCCATTCAAATTTTCATTTTTTACAATTTTCCTTGCATTTTCTATAATGGTTTCTATGAACTTGCAGTGCTGATCCATTTGCCAAGAAGGATTGGTATGATATTAAGGCTCCTTCAGTTTTCCAGGTGAAGAATGTCGGCAAGACCCTCGTGTCTCGTACTCAGGGTACCAAGGTATTGTTTTCCTCTGTCATGTTTTTTGTAATTTGGTTTGATTTGTACATTGTTAGGTTATTGTACGAATTTATATGATCCTATCTTACTTTCATTGAATATCTATCTGGACCCTCCCTGATTGTTTAGATAGCTTAATTAAGAGCTTTTATATTTAAGTAGTGTTGTTATATAAGTGTTTATGTATAAACTATTTTTATAACTAAAGATAGAATAAAGTCAAATTATTTTCACATAAGCTAAAAGTTTTTCCTATAGGCTATTATGGAAATAAGCTGAAAAAACATCTCATGGATATGTCATAAGCTTTTTCGTTAAGCTCTTTCAAACCGTCACTTAGTGACATTATAGTGTTCGTGTTGTGTTTTTGTCAGTGTTCTCAATCTTGTAGTGCAGAAAACAGCGGGTTGTTAAAATTCTGCTACACAATAGTGCTATAGTGCCACTTTACCCGCTATTTGACAACATTTTTTTTGCTAAATAGTGTACCATAAAACAATTTTTATACTAAAAAGCATATCGTGGAACAATAGTGATTTGTATAAATTCAGCTACCCTATAGCGATATGTGATCTACCCTCTGCTCGAAATATCTATCTAGCACTGGGAGAGATGCGTCCACACTTATAAAACAACAATCATATCTTAAACTATCAGCTTGACCCCACTTCTGCCCTGCCACAAGCAAGACCAACATTATTTAAAAGACAAGAAAAAAGACTGAACTGGCATTATCATGATGGGCTCAAACTTAAATATTTTCTAAAGTATCGACTCCAGGGGACATGACATTCCCATGTCTTCATTTTTATTCTCGTGATTAGAGTGAGTGTCCTCTTTCCACTTACATGAGAATGGAAGTTTTAATGTTACATTGTAACATATATTCATTTCCTAGCTTCTATTTAACCCATTGGTTTTGGTTACAAGGAATAACAAATATGTCTTAGTCTTTCATGGGGTTGCTGAAATTTGATAAATTGGAGTTTTGCACGCTTAATGCTTATTTAGAAAATGGTTGTTTTGAATGACAGATTGCTTCAGATGGACTCAAGCATAGAGTGTTTGAGGTTTCATTGGCTGATCTTCAAGGGGACGAAGACCATGCATTCAGGAAGATTAGGTTGAGAGCTGAAGATGTTCAAGGGAAAAATCTTTTGACAAATTTCTGGGTATGATAAGCTGCCGAACCATCTATTTGTCATAATGTTGTTTGTTGGTATTTTTTTTTTAATTTGATTTTGATTTTTTATTTTATTTACAGGGGATGAATTTCACAACTGACAAACTGAGGTCATTGGTGCGTAAGTGGCAAACTCTTGTTGAAGCCCATGTGGATGTCAAGACTACTGATAATTACACATTGAGGATGTTTTGCATTGGCTTTACCAAGAGGAGAGCTAACCAGGTGAAGAGGACCTGTTATGCACAATCTAGTCAGATTAGACAGGTAGATACATTGACGCTTTTCTTTTCAAATCATACTAGTTTTCTAGATTTATATATTAGTGTATCCAACACGGTATCCAACACATGTTTTAGGTAGGACCTTTCTTTTATGAAATGCTGTTATATATAAAGAAGAAATCACTGGTTTTGAACCTAGGATCATGCTTTGTCTTCTTCTAAGATATTTCTTATTAGTTACTAATGTTACACCTTTATTTGTTCAGATCCGTAGGAAGATGGTTGAGATCATGATCAACCAAGCATCATCCTGTGATTTGAAGGAATTGGTCCGCAAATTCATTCCCGAGATGATTGGGAAGGAGATTGAGAAAGCCACGTCTAGTATTTACCCCTTGCAGAATGTGTTCATCCGAAAAGTGAAGATCCTTAAAGCTCCCAAGTTTGATCTTGGAAAATTGATGGAGGTATTTTTTTGAAACAACTTTTTTATGTTTGTTCTCATTCACACCCAATATTTATTTTCATAATATCACCTGAATAAAAACTTTGGTTGTTACTTTGGTCACTGGTGTTATTTGCTTGACGAGATGAACTCTTTAATATAACCAATTACTTCAAACTTTCCAAAAGCTCTCTATTCGGTTTCTCCATAAACAACCTTCAGATTATTACAAGTTCAAAACTAAATACTTACTAATCCAATAAATGCTTGTGTGAAAACAAACTTAATCATGTTGCCTTTTAAAATTTTAATTTTGTTTTCCTTATGTTCTCTTTTAGCATGAGTATGCAGTTGTCACGTGTGCACACTTGTAACCATCTAAAAAGTGGCTTTGGTTTGATTTTGTTTCTATTTGGTCCTTGTAGGTTCATGGAGATTACTCTGAGGATGTTGGCACAAAGGTAGAGAGGCCTGCTGATGAAATGGTGACGGAGGAACCTACTGAAATTGTTGGAGCTTGA
Protein sequence

>MS.gene81099.t1

MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASDGLKHRVFEVSLADLQGDEDHAFRKIRLRAEDVQGKNLLTNFWGMNFTTDKLRSLVRKWQTLVEAHVDVKTTDNYTLRMFCIGFTKRRANQVKRTCYAQSSQIRQIRRKMVEIMINQASSCDLKELVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGTKVERPADEMVTEEPTEIVGA