Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52386.t1 | XP_003588965.1 | 99.5 | 184 | 1 | 0 | 1 | 184 | 1 | 184 | 9.10E-97 | 362.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52386.t1 | Q84MC2 | 81.1 | 185 | 34 | 1 | 1 | 184 | 1 | 185 | 2.1e-81 | 303.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52386.t1 | G7I9V5 | 99.5 | 184 | 1 | 0 | 1 | 184 | 1 | 184 | 6.6e-97 | 362.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051245 | MS.gene52386 | 0.80962 | 1.73E-50 | -1.69E-46 |
| MS.gene052115 | MS.gene52386 | 0.802718 | 4.91E-49 | -1.69E-46 |
| MS.gene056069 | MS.gene52386 | -0.818182 | 2.24E-52 | -1.69E-46 |
| MS.gene056432 | MS.gene52386 | 0.816909 | 4.34E-52 | -1.69E-46 |
| MS.gene057057 | MS.gene52386 | 0.800436 | 1.44E-48 | -1.69E-46 |
| MS.gene058182 | MS.gene52386 | 0.82621 | 3.07E-54 | -1.69E-46 |
| MS.gene058906 | MS.gene52386 | 0.831962 | 1.24E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene52386 | MS.gene41079 | PPI |
| MS.gene007681 | MS.gene52386 | PPI |
| MS.gene31266 | MS.gene52386 | PPI |
| MS.gene029824 | MS.gene52386 | PPI |
| MS.gene52386 | MS.gene007426 | PPI |
| MS.gene52386 | MS.gene028695 | PPI |
| MS.gene034799 | MS.gene52386 | PPI |
| MS.gene050128 | MS.gene52386 | PPI |
| MS.gene007521 | MS.gene52386 | PPI |
| MS.gene52386 | MS.gene20068 | PPI |
| MS.gene52386 | MS.gene055648 | PPI |
| MS.gene08753 | MS.gene52386 | PPI |
| MS.gene08691 | MS.gene52386 | PPI |
| MS.gene24610 | MS.gene52386 | PPI |
| MS.gene22428 | MS.gene52386 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52386.t1 | MTR_1g015830 | 99.457 | 184 | 1 | 0 | 1 | 184 | 1 | 184 | 1.32e-133 | 372 |
| MS.gene52386.t1 | MTR_1g057020 | 69.022 | 184 | 57 | 0 | 1 | 184 | 1 | 184 | 1.15e-96 | 279 |
| MS.gene52386.t1 | MTR_2g094790 | 70.787 | 178 | 52 | 0 | 7 | 184 | 11 | 188 | 3.29e-95 | 275 |
| MS.gene52386.t1 | MTR_4g058740 | 71.186 | 177 | 51 | 0 | 8 | 184 | 12 | 188 | 5.80e-94 | 272 |
| MS.gene52386.t1 | MTR_1g064260 | 69.663 | 178 | 54 | 0 | 7 | 184 | 11 | 188 | 1.04e-93 | 272 |
| MS.gene52386.t1 | MTR_7g101290 | 69.101 | 178 | 55 | 0 | 7 | 184 | 12 | 189 | 1.42e-93 | 271 |
| MS.gene52386.t1 | MTR_0041s0100 | 69.101 | 178 | 55 | 0 | 7 | 184 | 12 | 189 | 1.42e-93 | 271 |
| MS.gene52386.t1 | MTR_1g015830 | 100.000 | 132 | 0 | 0 | 53 | 184 | 1 | 132 | 3.38e-93 | 268 |
| MS.gene52386.t1 | MTR_3g113710 | 70.787 | 178 | 52 | 0 | 7 | 184 | 13 | 190 | 6.74e-93 | 270 |
| MS.gene52386.t1 | MTR_3g113710 | 70.787 | 178 | 52 | 0 | 7 | 184 | 13 | 190 | 1.85e-92 | 269 |
| MS.gene52386.t1 | MTR_1g064260 | 68.939 | 132 | 41 | 0 | 53 | 184 | 1 | 132 | 2.46e-66 | 200 |
| MS.gene52386.t1 | MTR_3g113710 | 73.913 | 115 | 30 | 0 | 70 | 184 | 10 | 124 | 1.22e-59 | 183 |
| MS.gene52386.t1 | MTR_1g024145 | 67.647 | 102 | 33 | 0 | 25 | 126 | 151 | 252 | 1.12e-43 | 146 |
| MS.gene52386.t1 | MTR_1g024850 | 63.380 | 71 | 26 | 0 | 5 | 75 | 13 | 83 | 6.37e-29 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52386.t1 | AT5G11950 | 81.081 | 185 | 34 | 1 | 1 | 184 | 1 | 185 | 1.08e-108 | 310 |
| MS.gene52386.t1 | AT5G11950 | 81.081 | 185 | 34 | 1 | 1 | 184 | 1 | 185 | 1.08e-108 | 310 |
| MS.gene52386.t1 | AT5G11950 | 81.081 | 185 | 34 | 1 | 1 | 184 | 1 | 185 | 1.08e-108 | 310 |
| MS.gene52386.t1 | AT2G28305 | 73.034 | 178 | 48 | 0 | 7 | 184 | 6 | 183 | 1.17e-97 | 281 |
| MS.gene52386.t1 | AT2G28305 | 73.034 | 178 | 48 | 0 | 7 | 184 | 6 | 183 | 4.06e-97 | 280 |
| MS.gene52386.t1 | AT5G06300 | 70.109 | 184 | 55 | 0 | 1 | 184 | 1 | 184 | 4.80e-97 | 280 |
| MS.gene52386.t1 | AT2G37210 | 69.663 | 178 | 54 | 0 | 7 | 184 | 12 | 189 | 4.51e-95 | 275 |
| MS.gene52386.t1 | AT3G53450 | 69.101 | 178 | 55 | 0 | 7 | 184 | 12 | 189 | 1.53e-92 | 269 |
| MS.gene52386.t1 | AT2G35990 | 65.761 | 184 | 63 | 0 | 1 | 184 | 1 | 184 | 1.28e-91 | 266 |
| MS.gene52386.t1 | AT5G03270 | 67.222 | 180 | 59 | 0 | 5 | 184 | 15 | 194 | 1.48e-90 | 263 |
| MS.gene52386.t1 | AT5G03270 | 67.222 | 180 | 59 | 0 | 5 | 184 | 15 | 194 | 1.63e-90 | 263 |
| MS.gene52386.t1 | AT2G37210 | 60.891 | 202 | 55 | 1 | 7 | 184 | 12 | 213 | 8.09e-89 | 260 |
| MS.gene52386.t1 | AT4G35190 | 66.304 | 184 | 62 | 0 | 1 | 184 | 1 | 184 | 6.82e-88 | 256 |
| MS.gene52386.t1 | AT4G35190 | 66.304 | 184 | 62 | 0 | 1 | 184 | 1 | 184 | 1.58e-87 | 256 |
| MS.gene52386.t1 | AT5G11950 | 84.848 | 132 | 20 | 0 | 53 | 184 | 1 | 132 | 1.41e-78 | 231 |
| MS.gene52386.t1 | AT2G28305 | 71.739 | 138 | 39 | 0 | 3 | 140 | 2 | 139 | 1.24e-71 | 214 |
| MS.gene52386.t1 | AT2G35990 | 64.394 | 132 | 47 | 0 | 53 | 184 | 1 | 132 | 5.48e-61 | 187 |
| MS.gene52386.t1 | AT2G35990 | 64.394 | 132 | 47 | 0 | 53 | 184 | 1 | 132 | 5.48e-61 | 187 |
| MS.gene52386.t1 | AT5G26140 | 69.291 | 127 | 17 | 1 | 80 | 184 | 6 | 132 | 1.07e-49 | 158 |
| MS.gene52386.t1 | AT5G26140 | 66.372 | 113 | 16 | 1 | 94 | 184 | 1 | 113 | 3.54e-40 | 133 |
| MS.gene52386.t1 | AT5G26140 | 75.641 | 78 | 19 | 0 | 107 | 184 | 21 | 98 | 1.21e-33 | 116 |
Find 43 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGAACATAGATTTGGTTTA+TGG | 0.161614 | 1.4:-6491407 | MS.gene52386:CDS |
| CATCTTCAACATAAGTTCTT+TGG | 0.223030 | 1.4:+6489897 | None:intergenic |
| TGGAACTATGGAAGAGCTTC+TGG | 0.266363 | 1.4:-6490166 | MS.gene52386:CDS |
| TCCTCATAATCAGGAGGATA+TGG | 0.292672 | 1.4:-6490186 | MS.gene52386:intron |
| AATGGTGGTTGTCATGTTCT+AGG | 0.326103 | 1.4:-6491338 | MS.gene52386:CDS |
| TCATGCGGCATGAGAGCTTT+TGG | 0.330366 | 1.4:+6490941 | None:intergenic |
| TGGTGGAAGTGTTGGATTGA+TGG | 0.341974 | 1.4:-6491384 | MS.gene52386:CDS |
| GGTTAAGAGGAACATAGATT+TGG | 0.375088 | 1.4:-6491414 | MS.gene52386:CDS |
| GGTGGAAGTGTTGGATTGAT+GGG | 0.382799 | 1.4:-6491383 | MS.gene52386:CDS |
| ACTGAAAACATGGCGGTTGC+CGG | 0.398415 | 1.4:+6491868 | None:intergenic |
| GGTTTGTGTTTCAGGTTAAG+AGG | 0.417871 | 1.4:-6491427 | MS.gene52386:intron |
| ATCAGGAGGATATGGAACTA+TGG | 0.439372 | 1.4:-6490178 | MS.gene52386:intron |
| ATAGATTTGGTTTATGGTGG+TGG | 0.456028 | 1.4:-6491401 | MS.gene52386:CDS |
| AAGGAAGCAGAAAGTTCAAA+AGG | 0.460142 | 1.4:-6491916 | MS.gene52386:CDS |
| AACATAGATTTGGTTTATGG+TGG | 0.467733 | 1.4:-6491404 | MS.gene52386:CDS |
| GTTTATGGTGGTGGAAGTGT+TGG | 0.468866 | 1.4:-6491392 | MS.gene52386:CDS |
| AGCTTCTGGAGATGATAACT+TGG | 0.479259 | 1.4:-6490152 | MS.gene52386:CDS |
| GTCTTCTGCGGCAGCAACTC+CGG | 0.499932 | 1.4:-6491887 | MS.gene52386:CDS |
| ATGATAACTTGGGCTCAACT+TGG | 0.508240 | 1.4:-6490141 | MS.gene52386:CDS |
| GACAACTATACTCCGAGCAC+TGG | 0.509009 | 1.4:+6489933 | None:intergenic |
| TTTGACAATGGTGTTGAAGA+AGG | 0.509776 | 1.4:-6489967 | MS.gene52386:CDS |
| GTGAAGCAGTAGGTGAAGTA+AGG | 0.514214 | 1.4:-6490470 | MS.gene52386:CDS |
| ATGGTGGTTGTCATGTTCTA+GGG | 0.515119 | 1.4:-6491337 | MS.gene52386:intron |
| AAGTTCATCTGCTAATTGAA+TGG | 0.518634 | 1.4:+6491838 | None:intergenic |
| GTTGGCCTACTGAATGTTGA+TGG | 0.518897 | 1.4:-6490015 | MS.gene52386:CDS |
| CAAAGAACTTATGTTGAAGA+TGG | 0.528044 | 1.4:-6489896 | MS.gene52386:CDS |
| TTGCTTGCATTGTTTGACAA+TGG | 0.530752 | 1.4:-6489979 | MS.gene52386:CDS |
| AGGAAGCAGAAAGTTCAAAA+GGG | 0.552817 | 1.4:-6491915 | MS.gene52386:CDS |
| AGAACTTATGTTGAAGATGG+AGG | 0.558261 | 1.4:-6489893 | None:intergenic |
| CAGATATCTGGTGAAGCAGT+AGG | 0.570380 | 1.4:-6490480 | MS.gene52386:CDS |
| TGCAATGGCTCAAGAAGCTG+AGG | 0.570924 | 1.4:-6490418 | MS.gene52386:CDS |
| GAGGCATTTATTGCACTCCC+TGG | 0.581953 | 1.4:-6490399 | MS.gene52386:intron |
| ACAACTATACTCCGAGCACT+GGG | 0.596880 | 1.4:+6489934 | None:intergenic |
| TGGCGGCGTCACTGAAAACA+TGG | 0.602579 | 1.4:+6491858 | None:intergenic |
| GCATGAGAGAAAAGCTGCAA+TGG | 0.603274 | 1.4:-6490433 | MS.gene52386:CDS |
| AAAAGCTCTCATGCCGCATG+AGG | 0.606750 | 1.4:-6490939 | MS.gene52386:intron |
| AGTAACCATCAACATTCAGT+AGG | 0.622543 | 1.4:+6490010 | None:intergenic |
| GCTTCTGGAGATGATAACTT+GGG | 0.623818 | 1.4:-6490151 | MS.gene52386:CDS |
| GATTCATTAAGCCCAGTGCT+CGG | 0.627959 | 1.4:-6489945 | MS.gene52386:CDS |
| AGTAGCACAAATACCTCATG+CGG | 0.657014 | 1.4:+6490926 | None:intergenic |
| TTCATCTGCTAATTGAATGG+CGG | 0.661275 | 1.4:+6491841 | None:intergenic |
| AAAAGGGTATGTGTCTTCTG+CGG | 0.690009 | 1.4:-6491899 | MS.gene52386:CDS |
| CGGCGTCACTGAAAACATGG+CGG | 0.784838 | 1.4:+6491861 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATCTCAAAAAATGTATAA+TGG | - | chr1.4:6490461-6490480 | MS.gene52386:CDS | 15.0% |
| !!! | ATTGTATTTTTCTTAATCTT+TGG | - | chr1.4:6490043-6490062 | MS.gene52386:intron | 15.0% |
| !!! | TTTTATATAAAAGTGTATCT+GGG | - | chr1.4:6490113-6490132 | MS.gene52386:intron | 15.0% |
| !!! | TTTTTATATAAAAGTGTATC+TGG | - | chr1.4:6490112-6490131 | MS.gene52386:intron | 15.0% |
| !!! | TTTTTATGTGTTTTGTTTTA+TGG | - | chr1.4:6490369-6490388 | MS.gene52386:intron | 15.0% |
| !! | ATAAGTGTTTATATGCTATA+AGG | + | chr1.4:6490590-6490609 | None:intergenic | 20.0% |
| !!! | AGAGAATATTTGCTTTTTTT+GGG | - | chr1.4:6490150-6490169 | MS.gene52386:CDS | 20.0% |
| !!! | CTTGTAATTTCTTATTTGTA+TGG | + | chr1.4:6491103-6491122 | None:intergenic | 20.0% |
| ! | AAACATTAACATTTCACACA+TGG | + | chr1.4:6490284-6490303 | None:intergenic | 25.0% |
| ! | AATAACACAGATCTTACAAA+GGG | + | chr1.4:6490805-6490824 | None:intergenic | 25.0% |
| ! | ACTTGGAATTCATAAAAAAC+CGG | - | chr1.4:6491693-6491712 | MS.gene52386:intron | 25.0% |
| ! | TCTCAAAAAATGTATAATGG+TGG | - | chr1.4:6490464-6490483 | MS.gene52386:CDS | 25.0% |
| ! | TTATGACATTTGACAATCAA+AGG | - | chr1.4:6491045-6491064 | MS.gene52386:intron | 25.0% |
| !! | TTTGATAATAGTTTATCGTC+TGG | - | chr1.4:6491012-6491031 | MS.gene52386:intron | 25.0% |
| !!! | CAGAGAATATTTGCTTTTTT+TGG | - | chr1.4:6490149-6490168 | MS.gene52386:CDS | 25.0% |
| !!! | TCTTTTATTTTTCGTGCATT+GGG | - | chr1.4:6491550-6491569 | MS.gene52386:intron | 25.0% |
| !!! | TTCTTTTATTTTTCGTGCAT+TGG | - | chr1.4:6491549-6491568 | MS.gene52386:intron | 25.0% |
| AAATTACAAGAATGTTAGCG+AGG | - | chr1.4:6491113-6491132 | MS.gene52386:intron | 30.0% | |
| AAGTAACATCATAACGTTAC+CGG | + | chr1.4:6491715-6491734 | None:intergenic | 30.0% | |
| AAGTTCATCTGCTAATTGAA+TGG | + | chr1.4:6489982-6490001 | None:intergenic | 30.0% | |
| AATAAGTTGTTTATCCGAAC+AGG | + | chr1.4:6490562-6490581 | None:intergenic | 30.0% | |
| AATGTAGAGTAGTACATATC+AGG | + | chr1.4:6490844-6490863 | None:intergenic | 30.0% | |
| AATTACAAGAATGTTAGCGA+GGG | - | chr1.4:6491114-6491133 | MS.gene52386:intron | 30.0% | |
| ACTTTGTTGGATAAAATGCT+TGG | - | chr1.4:6491731-6491750 | MS.gene52386:intron | 30.0% | |
| ATAAGTTGTTTATCCGAACA+GGG | + | chr1.4:6490561-6490580 | None:intergenic | 30.0% | |
| ATGTACTACTCTACATTTAC+AGG | - | chr1.4:6490847-6490866 | MS.gene52386:intron | 30.0% | |
| CAAAGAACTTATGTTGAAGA+TGG | - | chr1.4:6491921-6491940 | MS.gene52386:CDS | 30.0% | |
| CAATAACACAGATCTTACAA+AGG | + | chr1.4:6490806-6490825 | None:intergenic | 30.0% | |
| CATCTTCAACATAAGTTCTT+TGG | + | chr1.4:6491923-6491942 | None:intergenic | 30.0% | |
| CGAACTAACTACTATCATAA+AGG | + | chr1.4:6491243-6491262 | None:intergenic | 30.0% | |
| GGGTCAACATATGATTATAA+CGG | + | chr1.4:6491763-6491782 | None:intergenic | 30.0% | |
| TAACACTATAACAGTTACAC+AGG | + | chr1.4:6490921-6490940 | None:intergenic | 30.0% | |
| TCATCTTAGTATGCTGTAAT+TGG | - | chr1.4:6491304-6491323 | MS.gene52386:intron | 30.0% | |
| TGTACTACTCTACATTTACA+GGG | - | chr1.4:6490848-6490867 | MS.gene52386:intron | 30.0% | |
| TTTGATCTCTAGCAATGAAT+TGG | - | chr1.4:6490983-6491002 | MS.gene52386:intron | 30.0% | |
| ! | AACATAGATTTGGTTTATGG+TGG | - | chr1.4:6490413-6490432 | MS.gene52386:CDS | 30.0% |
| ! | AACTCTTTGAAGAGTTATTC+AGG | + | chr1.4:6491449-6491468 | None:intergenic | 30.0% |
| ! | AGGAACATAGATTTGGTTTA+TGG | - | chr1.4:6490410-6490429 | MS.gene52386:CDS | 30.0% |
| ! | ATATAAAAGTGTATCTGGGT+AGG | - | chr1.4:6490117-6490136 | MS.gene52386:intron | 30.0% |
| ! | CTTCTGATAATGACCTATTT+GGG | - | chr1.4:6491201-6491220 | MS.gene52386:intron | 30.0% |
| ! | GTGTACAGAAACATTGATTA+AGG | - | chr1.4:6490331-6490350 | MS.gene52386:intron | 30.0% |
| ! | GTTGTTGATTGATATCACTT+TGG | - | chr1.4:6490535-6490554 | MS.gene52386:intron | 30.0% |
| ! | TCTTCTGATAATGACCTATT+TGG | - | chr1.4:6491200-6491219 | MS.gene52386:intron | 30.0% |
| !! | ACGTTATGATGTTACTTTGT+TGG | - | chr1.4:6491718-6491737 | MS.gene52386:intron | 30.0% |
| !! | TGTTTTATGGTTTGTGTTTC+AGG | - | chr1.4:6490382-6490401 | MS.gene52386:intron | 30.0% |
| !!! | CTATTGATTTTCGTTCTACA+CGG | - | chr1.4:6490954-6490973 | MS.gene52386:intron | 30.0% |
| !!! | GGTTTATTTTGACAGATATC+TGG | - | chr1.4:6491325-6491344 | MS.gene52386:intron | 30.0% |
| AAGGAAGCAGAAAGTTCAAA+AGG | - | chr1.4:6489901-6489920 | MS.gene52386:CDS | 35.0% | |
| AGAGTTATTCAGGTAATACC+AGG | + | chr1.4:6491439-6491458 | None:intergenic | 35.0% | |
| AGGAAGCAGAAAGTTCAAAA+GGG | - | chr1.4:6489902-6489921 | MS.gene52386:CDS | 35.0% | |
| AGTAACCATCAACATTCAGT+AGG | + | chr1.4:6491810-6491829 | None:intergenic | 35.0% | |
| ATTCTATCCTCATAATCAGG+AGG | - | chr1.4:6491625-6491644 | MS.gene52386:intron | 35.0% | |
| GAGTTATTCAGGTAATACCA+GGG | + | chr1.4:6491438-6491457 | None:intergenic | 35.0% | |
| GATTATGAGGATAGAATGGA+GGG | + | chr1.4:6491622-6491641 | None:intergenic | 35.0% | |
| GGTTAAGAGGAACATAGATT+TGG | - | chr1.4:6490403-6490422 | MS.gene52386:CDS | 35.0% | |
| GTATGTTAGGGTAATGTCAA+TGG | - | chr1.4:6491142-6491161 | MS.gene52386:intron | 35.0% | |
| TACAAAGGGTCTGTTTGAAT+AGG | + | chr1.4:6490791-6490810 | None:intergenic | 35.0% | |
| TCCATTCTATCCTCATAATC+AGG | - | chr1.4:6491622-6491641 | MS.gene52386:intron | 35.0% | |
| TCCTGATTATGAGGATAGAA+TGG | + | chr1.4:6491626-6491645 | None:intergenic | 35.0% | |
| TGATAGTAGTTAGTTCGTCA+TGG | - | chr1.4:6491246-6491265 | MS.gene52386:intron | 35.0% | |
| TGATTATGAGGATAGAATGG+AGG | + | chr1.4:6491623-6491642 | None:intergenic | 35.0% | |
| TTCATCTGCTAATTGAATGG+CGG | + | chr1.4:6489979-6489998 | None:intergenic | 35.0% | |
| TTGCTTGCATTGTTTGACAA+TGG | - | chr1.4:6491838-6491857 | MS.gene52386:CDS | 35.0% | |
| ! | AATGGAGGGTATGAGAAAAA+AGG | + | chr1.4:6491608-6491627 | None:intergenic | 35.0% |
| ! | ATAGATTTGGTTTATGGTGG+TGG | - | chr1.4:6490416-6490435 | MS.gene52386:CDS | 35.0% |
| ! | GAGCAAATTTTCTCCCAAAT+AGG | + | chr1.4:6491217-6491236 | None:intergenic | 35.0% |
| ! | TTTGACAATGGTGTTGAAGA+AGG | - | chr1.4:6491850-6491869 | MS.gene52386:CDS | 35.0% |
| AAATATCATCCTGCACAGGT+TGG | - | chr1.4:6491784-6491803 | MS.gene52386:intron | 40.0% | |
| AATGGTGGTTGTCATGTTCT+AGG | - | chr1.4:6490479-6490498 | MS.gene52386:CDS | 40.0% | |
| AGCGAGGGTTTATGTATGTT+AGG | - | chr1.4:6491129-6491148 | MS.gene52386:intron | 40.0% | |
| AGTAGCACAAATACCTCATG+CGG | + | chr1.4:6490894-6490913 | None:intergenic | 40.0% | |
| ATCAGGAGGATATGGAACTA+TGG | - | chr1.4:6491639-6491658 | MS.gene52386:intron | 40.0% | |
| ATGATAACTTGGGCTCAACT+TGG | - | chr1.4:6491676-6491695 | MS.gene52386:intron | 40.0% | |
| ATGGTGGTTGTCATGTTCTA+GGG | - | chr1.4:6490480-6490499 | MS.gene52386:CDS | 40.0% | |
| GCGAGGGTTTATGTATGTTA+GGG | - | chr1.4:6491130-6491149 | MS.gene52386:intron | 40.0% | |
| TCCATATCCTCCTGATTATG+AGG | + | chr1.4:6491635-6491654 | None:intergenic | 40.0% | |
| TCCTCATAATCAGGAGGATA+TGG | - | chr1.4:6491631-6491650 | MS.gene52386:intron | 40.0% | |
| TTAGGGTAATGTCAATGGAG+CGG | - | chr1.4:6491147-6491166 | MS.gene52386:intron | 40.0% | |
| ! | AAAAGGGTATGTGTCTTCTG+CGG | - | chr1.4:6489918-6489937 | MS.gene52386:CDS | 40.0% |
| ! | ACCTGTGCAGGATGATATTT+TGG | + | chr1.4:6491784-6491803 | None:intergenic | 40.0% |
| ! | AGCTTCTGGAGATGATAACT+TGG | - | chr1.4:6491665-6491684 | MS.gene52386:intron | 40.0% |
| ! | CCTGTGCAGGATGATATTTT+GGG | + | chr1.4:6491783-6491802 | None:intergenic | 40.0% |
| ! | GCTTCTGGAGATGATAACTT+GGG | - | chr1.4:6491666-6491685 | MS.gene52386:intron | 40.0% |
| !! | GGTTTGTGTTTCAGGTTAAG+AGG | - | chr1.4:6490390-6490409 | MS.gene52386:intron | 40.0% |
| ACAACTATACTCCGAGCACT+GGG | + | chr1.4:6491886-6491905 | None:intergenic | 45.0% | |
| CAGATATCTGGTGAAGCAGT+AGG | - | chr1.4:6491337-6491356 | MS.gene52386:intron | 45.0% | |
| CCCAAAATATCATCCTGCAC+AGG | - | chr1.4:6491780-6491799 | MS.gene52386:intron | 45.0% | |
| GATATCACTTTGGCCCTGTT+CGG | - | chr1.4:6490545-6490564 | MS.gene52386:intron | 45.0% | |
| GATTCATTAAGCCCAGTGCT+CGG | - | chr1.4:6491872-6491891 | MS.gene52386:CDS | 45.0% | |
| GCATGAGAGAAAAGCTGCAA+TGG | - | chr1.4:6491384-6491403 | MS.gene52386:CDS | 45.0% | |
| GTGAAGCAGTAGGTGAAGTA+AGG | - | chr1.4:6491347-6491366 | MS.gene52386:CDS | 45.0% | |
| TAGGGTAATGTCAATGGAGC+GGG | - | chr1.4:6491148-6491167 | MS.gene52386:intron | 45.0% | |
| TGGAACTATGGAAGAGCTTC+TGG | - | chr1.4:6491651-6491670 | MS.gene52386:intron | 45.0% | |
| ! | GTTGGCCTACTGAATGTTGA+TGG | - | chr1.4:6491802-6491821 | MS.gene52386:intron | 45.0% |
| !! | GGTGGAAGTGTTGGATTGAT+GGG | - | chr1.4:6490434-6490453 | MS.gene52386:CDS | 45.0% |
| !! | GTTTATGGTGGTGGAAGTGT+TGG | - | chr1.4:6490425-6490444 | MS.gene52386:CDS | 45.0% |
| !! | TGGTGGAAGTGTTGGATTGA+TGG | - | chr1.4:6490433-6490452 | MS.gene52386:CDS | 45.0% |
| AAAAGCTCTCATGCCGCATG+AGG | - | chr1.4:6490878-6490897 | MS.gene52386:intron | 50.0% | |
| ACTGAAAACATGGCGGTTGC+CGG | + | chr1.4:6489952-6489971 | None:intergenic | 50.0% | |
| AGGGTAATGTCAATGGAGCG+GGG | - | chr1.4:6491149-6491168 | MS.gene52386:intron | 50.0% | |
| GACAACTATACTCCGAGCAC+TGG | + | chr1.4:6491887-6491906 | None:intergenic | 50.0% | |
| TGCAATGGCTCAAGAAGCTG+AGG | - | chr1.4:6491399-6491418 | MS.gene52386:CDS | 50.0% | |
| ! | GAGGCATTTATTGCACTCCC+TGG | - | chr1.4:6491418-6491437 | MS.gene52386:intron | 50.0% |
| ! | TCATGCGGCATGAGAGCTTT+TGG | + | chr1.4:6490879-6490898 | None:intergenic | 50.0% |
| CGGCGTCACTGAAAACATGG+CGG | + | chr1.4:6489959-6489978 | None:intergenic | 55.0% | |
| TGGCGGCGTCACTGAAAACA+TGG | + | chr1.4:6489962-6489981 | None:intergenic | 55.0% | |
| TTCAGTAGGCCAACCTGTGC+AGG | + | chr1.4:6491796-6491815 | None:intergenic | 55.0% | |
| GTCTTCTGCGGCAGCAACTC+CGG | - | chr1.4:6489930-6489949 | MS.gene52386:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 6489894 | 6491945 | 6489894 | ID=MS.gene52386 |
| chr1.4 | mRNA | 6489894 | 6491945 | 6489894 | ID=MS.gene52386.t1;Parent=MS.gene52386 |
| chr1.4 | exon | 6491838 | 6491945 | 6491838 | ID=MS.gene52386.t1.exon1;Parent=MS.gene52386.t1 |
| chr1.4 | CDS | 6491838 | 6491945 | 6491838 | ID=cds.MS.gene52386.t1;Parent=MS.gene52386.t1 |
| chr1.4 | exon | 6491338 | 6491435 | 6491338 | ID=MS.gene52386.t1.exon2;Parent=MS.gene52386.t1 |
| chr1.4 | CDS | 6491338 | 6491435 | 6491338 | ID=cds.MS.gene52386.t1;Parent=MS.gene52386.t1 |
| chr1.4 | exon | 6490940 | 6490970 | 6490940 | ID=MS.gene52386.t1.exon3;Parent=MS.gene52386.t1 |
| chr1.4 | CDS | 6490940 | 6490970 | 6490940 | ID=cds.MS.gene52386.t1;Parent=MS.gene52386.t1 |
| chr1.4 | exon | 6490400 | 6490499 | 6490400 | ID=MS.gene52386.t1.exon4;Parent=MS.gene52386.t1 |
| chr1.4 | CDS | 6490400 | 6490499 | 6490400 | ID=cds.MS.gene52386.t1;Parent=MS.gene52386.t1 |
| chr1.4 | exon | 6490125 | 6490195 | 6490125 | ID=MS.gene52386.t1.exon5;Parent=MS.gene52386.t1 |
| chr1.4 | CDS | 6490125 | 6490195 | 6490125 | ID=cds.MS.gene52386.t1;Parent=MS.gene52386.t1 |
| chr1.4 | exon | 6489894 | 6490037 | 6489894 | ID=MS.gene52386.t1.exon6;Parent=MS.gene52386.t1 |
| chr1.4 | CDS | 6489894 | 6490037 | 6489894 | ID=cds.MS.gene52386.t1;Parent=MS.gene52386.t1 |
| Gene Sequence |
| Protein sequence |
