Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33028.t1 | XP_003588965.1 | 99.5 | 214 | 1 | 0 | 1 | 214 | 1 | 214 | 4.60E-116 | 427.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33028.t1 | Q84MC2 | 79.3 | 213 | 43 | 1 | 1 | 212 | 1 | 213 | 8.5e-95 | 347.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33028.t1 | G7I9V5 | 99.5 | 214 | 1 | 0 | 1 | 214 | 1 | 214 | 3.3e-116 | 427.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051063 | MS.gene33028 | 0.80158 | 8.42E-49 | -1.69E-46 |
| MS.gene051245 | MS.gene33028 | 0.805428 | 1.34E-49 | -1.69E-46 |
| MS.gene051577 | MS.gene33028 | 0.839475 | 1.55E-57 | -1.69E-46 |
| MS.gene051746 | MS.gene33028 | 0.821438 | 4.04E-53 | -1.69E-46 |
| MS.gene051748 | MS.gene33028 | 0.824453 | 8.01E-54 | -1.69E-46 |
| MS.gene051903 | MS.gene33028 | 0.829603 | 4.69E-55 | -1.69E-46 |
| MS.gene052176 | MS.gene33028 | 0.800788 | 1.22E-48 | -1.69E-46 |
| MS.gene052302 | MS.gene33028 | 0.826446 | 2.70E-54 | -1.69E-46 |
| MS.gene052358 | MS.gene33028 | -0.807665 | 4.52E-50 | -1.69E-46 |
| MS.gene052376 | MS.gene33028 | 0.81582 | 7.60E-52 | -1.69E-46 |
| MS.gene052856 | MS.gene33028 | 0.800442 | 1.44E-48 | -1.69E-46 |
| MS.gene052858 | MS.gene33028 | 0.800703 | 1.27E-48 | -1.69E-46 |
| MS.gene056830 | MS.gene33028 | -0.832928 | 7.14E-56 | -1.69E-46 |
| MS.gene057057 | MS.gene33028 | 0.806958 | 6.39E-50 | -1.69E-46 |
| MS.gene057079 | MS.gene33028 | 0.81017 | 1.32E-50 | -1.69E-46 |
| MS.gene058084 | MS.gene33028 | 0.80052 | 1.39E-48 | -1.69E-46 |
| MS.gene058182 | MS.gene33028 | 0.827718 | 1.34E-54 | -1.69E-46 |
| MS.gene058238 | MS.gene33028 | 0.813441 | 2.56E-51 | -1.69E-46 |
| MS.gene058906 | MS.gene33028 | 0.829949 | 3.87E-55 | -1.69E-46 |
| MS.gene06001 | MS.gene33028 | 0.807578 | 4.72E-50 | -1.69E-46 |
| MS.gene060165 | MS.gene33028 | 0.804807 | 1.81E-49 | -1.69E-46 |
| MS.gene060619 | MS.gene33028 | 0.83368 | 4.64E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene33028 | MS.gene029824 | PPI |
| MS.gene33028 | MS.gene24610 | PPI |
| MS.gene33028 | MS.gene41079 | PPI |
| MS.gene31266 | MS.gene33028 | PPI |
| MS.gene33028 | MS.gene08753 | PPI |
| MS.gene33028 | MS.gene007426 | PPI |
| MS.gene050128 | MS.gene33028 | PPI |
| MS.gene33028 | MS.gene034799 | PPI |
| MS.gene33028 | MS.gene08691 | PPI |
| MS.gene33028 | MS.gene007521 | PPI |
| MS.gene33028 | MS.gene028695 | PPI |
| MS.gene33028 | MS.gene20068 | PPI |
| MS.gene007681 | MS.gene33028 | PPI |
| MS.gene33028 | MS.gene055648 | PPI |
| MS.gene22428 | MS.gene33028 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33028.t1 | MTR_1g015830 | 99.533 | 214 | 1 | 0 | 1 | 214 | 1 | 214 | 5.95e-159 | 438 |
| MS.gene33028.t1 | MTR_1g015830 | 100.000 | 162 | 0 | 0 | 53 | 214 | 1 | 162 | 4.77e-118 | 332 |
| MS.gene33028.t1 | MTR_1g064260 | 66.990 | 206 | 68 | 0 | 7 | 212 | 11 | 216 | 2.73e-103 | 297 |
| MS.gene33028.t1 | MTR_7g101290 | 67.327 | 202 | 66 | 0 | 7 | 208 | 12 | 213 | 1.21e-102 | 296 |
| MS.gene33028.t1 | MTR_0041s0100 | 67.327 | 202 | 66 | 0 | 7 | 208 | 12 | 213 | 1.21e-102 | 296 |
| MS.gene33028.t1 | MTR_2g094790 | 68.687 | 198 | 62 | 0 | 7 | 204 | 11 | 208 | 1.55e-102 | 295 |
| MS.gene33028.t1 | MTR_4g058740 | 69.036 | 197 | 61 | 0 | 8 | 204 | 12 | 208 | 2.96e-102 | 294 |
| MS.gene33028.t1 | MTR_3g113710 | 69.036 | 197 | 61 | 0 | 7 | 203 | 13 | 209 | 1.11e-100 | 291 |
| MS.gene33028.t1 | MTR_1g057020 | 62.441 | 213 | 79 | 1 | 1 | 213 | 1 | 212 | 9.91e-98 | 283 |
| MS.gene33028.t1 | MTR_3g113710 | 70.787 | 178 | 52 | 0 | 7 | 184 | 13 | 190 | 8.36e-92 | 269 |
| MS.gene33028.t1 | MTR_1g064260 | 65.625 | 160 | 55 | 0 | 53 | 212 | 1 | 160 | 1.56e-75 | 225 |
| MS.gene33028.t1 | MTR_3g113710 | 70.896 | 134 | 39 | 0 | 70 | 203 | 10 | 143 | 2.22e-67 | 204 |
| MS.gene33028.t1 | MTR_1g024145 | 67.647 | 102 | 33 | 0 | 25 | 126 | 151 | 252 | 1.55e-43 | 147 |
| MS.gene33028.t1 | MTR_1g024850 | 63.380 | 71 | 26 | 0 | 5 | 75 | 13 | 83 | 1.83e-28 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33028.t1 | AT5G11950 | 79.343 | 213 | 43 | 1 | 1 | 212 | 1 | 213 | 2.20e-126 | 355 |
| MS.gene33028.t1 | AT5G11950 | 79.343 | 213 | 43 | 1 | 1 | 212 | 1 | 213 | 2.20e-126 | 355 |
| MS.gene33028.t1 | AT5G11950 | 79.343 | 213 | 43 | 1 | 1 | 212 | 1 | 213 | 2.20e-126 | 355 |
| MS.gene33028.t1 | AT2G28305 | 69.756 | 205 | 62 | 0 | 7 | 211 | 6 | 210 | 1.69e-107 | 308 |
| MS.gene33028.t1 | AT2G37210 | 65.854 | 205 | 69 | 1 | 7 | 211 | 12 | 215 | 2.16e-103 | 297 |
| MS.gene33028.t1 | AT5G06300 | 63.551 | 214 | 77 | 1 | 1 | 213 | 1 | 214 | 3.98e-101 | 292 |
| MS.gene33028.t1 | AT3G53450 | 66.162 | 198 | 67 | 0 | 7 | 204 | 12 | 209 | 6.33e-100 | 289 |
| MS.gene33028.t1 | AT2G37210 | 58.515 | 229 | 70 | 2 | 7 | 211 | 12 | 239 | 2.27e-97 | 283 |
| MS.gene33028.t1 | AT2G28305 | 73.034 | 178 | 48 | 0 | 7 | 184 | 6 | 183 | 7.10e-97 | 280 |
| MS.gene33028.t1 | AT5G11950 | 81.875 | 160 | 29 | 0 | 53 | 212 | 1 | 160 | 5.52e-96 | 277 |
| MS.gene33028.t1 | AT2G35990 | 62.500 | 200 | 75 | 0 | 1 | 200 | 1 | 200 | 7.30e-95 | 276 |
| MS.gene33028.t1 | AT5G03270 | 66.310 | 187 | 63 | 0 | 5 | 191 | 15 | 201 | 2.34e-93 | 271 |
| MS.gene33028.t1 | AT4G35190 | 62.069 | 203 | 77 | 0 | 1 | 203 | 1 | 203 | 1.05e-91 | 268 |
| MS.gene33028.t1 | AT5G03270 | 67.033 | 182 | 60 | 0 | 5 | 186 | 15 | 196 | 5.14e-91 | 265 |
| MS.gene33028.t1 | AT4G35190 | 63.918 | 194 | 68 | 1 | 1 | 194 | 1 | 192 | 1.57e-87 | 257 |
| MS.gene33028.t1 | AT2G28305 | 73.134 | 134 | 36 | 0 | 7 | 140 | 6 | 139 | 4.50e-71 | 213 |
| MS.gene33028.t1 | AT2G35990 | 60.135 | 148 | 59 | 0 | 53 | 200 | 1 | 148 | 2.34e-64 | 196 |
| MS.gene33028.t1 | AT2G35990 | 60.135 | 148 | 59 | 0 | 53 | 200 | 1 | 148 | 2.34e-64 | 196 |
| MS.gene33028.t1 | AT5G26140 | 66.225 | 151 | 29 | 1 | 80 | 208 | 6 | 156 | 3.07e-62 | 191 |
| MS.gene33028.t1 | AT5G26140 | 63.504 | 137 | 28 | 1 | 94 | 208 | 1 | 137 | 6.85e-53 | 167 |
| MS.gene33028.t1 | AT5G26140 | 69.608 | 102 | 31 | 0 | 107 | 208 | 21 | 122 | 2.72e-46 | 149 |
Find 52 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGAACATAGATTTGGTTTA+TGG | 0.161614 | 1.1:+6205359 | MS.gene33028:CDS |
| CATCTTCAACATAAGTTCTT+TGG | 0.223030 | 1.1:-6206869 | None:intergenic |
| TGGAACTATGGAAGAGCTTC+TGG | 0.266363 | 1.1:+6206600 | MS.gene33028:CDS |
| TCCTCATAATCAGGAGGATA+TGG | 0.292672 | 1.1:+6206580 | MS.gene33028:intron |
| AATGGTGGTTGTCATGTTCT+AGG | 0.326103 | 1.1:+6205428 | MS.gene33028:CDS |
| TCATGCGGCATGAGAGCTTT+TGG | 0.330366 | 1.1:-6205825 | None:intergenic |
| TGGTGGAAGTGTTGGATTGA+TGG | 0.341974 | 1.1:+6205382 | MS.gene33028:CDS |
| GGTTAAGAGGAACATAGATT+TGG | 0.375088 | 1.1:+6205352 | MS.gene33028:intron |
| GGTGGAAGTGTTGGATTGAT+GGG | 0.382799 | 1.1:+6205383 | MS.gene33028:CDS |
| ACTGAAAACATGGCGGTTGC+CGG | 0.398415 | 1.1:-6204899 | None:intergenic |
| GGTTTGTGTTTCAGGTTAAG+AGG | 0.417871 | 1.1:+6205339 | MS.gene33028:intron |
| AGCTGGCAGATGAAGCAATT+AGG | 0.429412 | 1.1:+6207538 | MS.gene33028:CDS |
| ATCAGGAGGATATGGAACTA+TGG | 0.439372 | 1.1:+6206588 | MS.gene33028:intron |
| ATAGATTTGGTTTATGGTGG+TGG | 0.456028 | 1.1:+6205365 | MS.gene33028:CDS |
| AAGGAAGCAGAAAGTTCAAA+AGG | 0.460142 | 1.1:+6204851 | MS.gene33028:CDS |
| AACATAGATTTGGTTTATGG+TGG | 0.467733 | 1.1:+6205362 | MS.gene33028:CDS |
| GTTTATGGTGGTGGAAGTGT+TGG | 0.468866 | 1.1:+6205374 | MS.gene33028:CDS |
| AGCTTCTGGAGATGATAACT+TGG | 0.479259 | 1.1:+6206614 | MS.gene33028:CDS |
| GTCTTCTGCGGCAGCAACTC+CGG | 0.499932 | 1.1:+6204880 | MS.gene33028:CDS |
| ATGATAACTTGGGCTCAACT+TGG | 0.508240 | 1.1:+6206625 | MS.gene33028:CDS |
| GACAACTATACTCCGAGCAC+TGG | 0.509009 | 1.1:-6206833 | None:intergenic |
| CATGAGGGGCTACATGCTCA+TGG | 0.510740 | 1.1:-6207513 | None:intergenic |
| GTGAAGCAGTAGGTGAAGTA+AGG | 0.514214 | 1.1:+6206296 | MS.gene33028:CDS |
| ATGGTGGTTGTCATGTTCTA+GGG | 0.515119 | 1.1:+6205429 | MS.gene33028:CDS |
| TTCATCTGCCAGCTCTCATG+AGG | 0.517501 | 1.1:-6207529 | None:intergenic |
| AAGTTCATCTGCTAATTGAA+TGG | 0.518634 | 1.1:-6204929 | None:intergenic |
| GTTGGCCTACTGAATGTTGA+TGG | 0.518897 | 1.1:+6206751 | MS.gene33028:CDS |
| TCATCTGCCAGCTCTCATGA+GGG | 0.519557 | 1.1:-6207528 | None:intergenic |
| TTTGACAATGGTGTTGAAGA+AGG | 0.519647 | 1.1:+6206799 | MS.gene33028:CDS |
| CAAAGAACTTATGTTGAAGA+TGG | 0.528044 | 1.1:+6206870 | MS.gene33028:CDS |
| TTGCTTGCATTGTTTGACAA+TGG | 0.530752 | 1.1:+6206787 | MS.gene33028:CDS |
| AGGAAGCAGAAAGTTCAAAA+GGG | 0.552817 | 1.1:+6204852 | MS.gene33028:CDS |
| AGAACTTATGTTGAAGATGG+AGG | 0.558261 | 1.1:+6206873 | MS.gene33028:CDS |
| ATGTAGCCCCTCATGAGAGC+TGG | 0.566155 | 1.1:+6207521 | MS.gene33028:CDS |
| CAGATATCTGGTGAAGCAGT+AGG | 0.570380 | 1.1:+6206286 | MS.gene33028:intron |
| TGCAATGGCTCAAGAAGCTG+AGG | 0.570924 | 1.1:+6206348 | MS.gene33028:CDS |
| AAGCAATTAGGCAATTATCC+AGG | 0.578634 | 1.1:+6207550 | MS.gene33028:CDS |
| GAGGCATTTATTGCACTCCC+TGG | 0.581953 | 1.1:+6206367 | MS.gene33028:CDS |
| ACAACTATACTCCGAGCACT+GGG | 0.596880 | 1.1:-6206832 | None:intergenic |
| TGGCGGCGTCACTGAAAACA+TGG | 0.602579 | 1.1:-6204909 | None:intergenic |
| GCATGAGAGAAAAGCTGCAA+TGG | 0.603274 | 1.1:+6206333 | MS.gene33028:CDS |
| ATGAGGGGCTACATGCTCAT+GGG | 0.605666 | 1.1:-6207512 | None:intergenic |
| AAAAGCTCTCATGCCGCATG+AGG | 0.606750 | 1.1:+6205827 | MS.gene33028:CDS |
| CATCTGCCAGCTCTCATGAG+GGG | 0.620200 | 1.1:-6207527 | None:intergenic |
| AGTAACCATCAACATTCAGT+AGG | 0.622543 | 1.1:-6206756 | None:intergenic |
| GCTTCTGGAGATGATAACTT+GGG | 0.623818 | 1.1:+6206615 | MS.gene33028:CDS |
| GCTTCATTAAGCCCAGTGCT+CGG | 0.625476 | 1.1:+6206821 | MS.gene33028:CDS |
| GGGGCTACATGCTCATGGGA+AGG | 0.637642 | 1.1:-6207508 | None:intergenic |
| AGTAGCACAAATACCTCATG+CGG | 0.657014 | 1.1:-6205840 | None:intergenic |
| TTCATCTGCTAATTGAATGG+CGG | 0.661275 | 1.1:-6204926 | None:intergenic |
| AAAAGGGTATGTGTCTTCTG+CGG | 0.690009 | 1.1:+6204868 | MS.gene33028:CDS |
| CGGCGTCACTGAAAACATGG+CGG | 0.784838 | 1.1:-6204906 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAATAATAATAATAATA+AGG | - | chr1.1:6206923-6206942 | None:intergenic | 0.0% |
| !! | ATATCTCAAAAAATGTATAA+TGG | + | chr1.1:6205410-6205429 | MS.gene33028:CDS | 15.0% |
| !! | TAATAATAATAAGGTAAAAG+TGG | - | chr1.1:6206914-6206933 | None:intergenic | 15.0% |
| !!! | TTTTATATAAAAGTGTATCT+GGG | + | chr1.1:6205062-6205081 | MS.gene33028:intron | 15.0% |
| !!! | TTTTTATATAAAAGTGTATC+TGG | + | chr1.1:6205061-6205080 | MS.gene33028:intron | 15.0% |
| !!! | TTTTTATGTGTTTTGTTTTA+TGG | + | chr1.1:6205318-6205337 | MS.gene33028:intron | 15.0% |
| !! | AATAAGCTTAAAACATCTTA+TGG | + | chr1.1:6207162-6207181 | MS.gene33028:intron | 20.0% |
| !! | ATAAGTGTTTATATGCTATA+AGG | - | chr1.1:6205539-6205558 | None:intergenic | 20.0% |
| !! | TCTGATATTGTGTTAATTAA+AGG | + | chr1.1:6207447-6207466 | MS.gene33028:intron | 20.0% |
| !! | TGGATAAACAACTTAATTAA+GGG | + | chr1.1:6207058-6207077 | MS.gene33028:intron | 20.0% |
| !! | TTGGATAAACAACTTAATTA+AGG | + | chr1.1:6207057-6207076 | MS.gene33028:intron | 20.0% |
| !!! | AACTTTTTGAGTTTGAAAAT+TGG | - | chr1.1:6207388-6207407 | None:intergenic | 20.0% |
| !!! | ACTGTATTTTTCTTAATCTT+TGG | + | chr1.1:6204993-6205012 | MS.gene33028:intron | 20.0% |
| !!! | AGAGAATATTTGCTTTTTTT+GGG | + | chr1.1:6205099-6205118 | MS.gene33028:intron | 20.0% |
| !!! | CTTGTAATTTCTTATTTGTA+TGG | - | chr1.1:6206052-6206071 | None:intergenic | 20.0% |
| ! | AAACATTAACATTTCACACA+TGG | - | chr1.1:6205233-6205252 | None:intergenic | 25.0% |
| ! | AATAACACAGATCTTACAAA+GGG | - | chr1.1:6205754-6205773 | None:intergenic | 25.0% |
| ! | ACTTGGAATTCATAAAAAAC+CGG | + | chr1.1:6206642-6206661 | MS.gene33028:CDS | 25.0% |
| ! | AGAGTAATGTAAATTACTGT+TGG | - | chr1.1:6207430-6207449 | None:intergenic | 25.0% |
| ! | TCTCAAAAAATGTATAATGG+TGG | + | chr1.1:6205413-6205432 | MS.gene33028:CDS | 25.0% |
| ! | TGAACTAACTACTATCATAA+AGG | - | chr1.1:6206192-6206211 | None:intergenic | 25.0% |
| ! | TTATGACATTTGACAATCAA+AGG | + | chr1.1:6205994-6206013 | MS.gene33028:intron | 25.0% |
| !! | ATTAAGTTGTTTATCCAAAC+AGG | - | chr1.1:6207055-6207074 | None:intergenic | 25.0% |
| !! | ATTTTCATGAGACTTGATAT+AGG | - | chr1.1:6207251-6207270 | None:intergenic | 25.0% |
| !! | TGTAGTGTGATAATGTTAAT+AGG | + | chr1.1:6207315-6207334 | MS.gene33028:intron | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+GGG | - | chr1.1:6207054-6207073 | None:intergenic | 25.0% |
| !! | TTTGATAATAGTTTATCGTC+TGG | + | chr1.1:6205961-6205980 | MS.gene33028:intron | 25.0% |
| !! | TTTTCATGAGACTTGATATA+GGG | - | chr1.1:6207250-6207269 | None:intergenic | 25.0% |
| !!! | CAGAGAATATTTGCTTTTTT+TGG | + | chr1.1:6205098-6205117 | MS.gene33028:intron | 25.0% |
| !!! | TCTTTTATTTTTCGTGCATT+GGG | + | chr1.1:6206499-6206518 | MS.gene33028:intron | 25.0% |
| !!! | TTCTTTTATTTTTCGTGCAT+TGG | + | chr1.1:6206498-6206517 | MS.gene33028:intron | 25.0% |
| AAATTACAAGAATGTTAGCG+AGG | + | chr1.1:6206062-6206081 | MS.gene33028:intron | 30.0% | |
| AAGTAACATCATAACGTTAC+CGG | - | chr1.1:6206664-6206683 | None:intergenic | 30.0% | |
| AAGTTCATCTGCTAATTGAA+TGG | - | chr1.1:6204932-6204951 | None:intergenic | 30.0% | |
| AATAAGTTGTTTATCCGAAC+AGG | - | chr1.1:6205511-6205530 | None:intergenic | 30.0% | |
| AATGTAGAGTAGTACATATC+AGG | - | chr1.1:6205793-6205812 | None:intergenic | 30.0% | |
| AATTACAAGAATGTTAGCGA+GGG | + | chr1.1:6206063-6206082 | MS.gene33028:intron | 30.0% | |
| ACTTTGTTGGATAAAATGCT+TGG | + | chr1.1:6206680-6206699 | MS.gene33028:intron | 30.0% | |
| ATAAGTTGTTTATCCGAACA+GGG | - | chr1.1:6205510-6205529 | None:intergenic | 30.0% | |
| ATGTACTACTCTACATTTAC+AGG | + | chr1.1:6205796-6205815 | MS.gene33028:intron | 30.0% | |
| CAAAGAACTTATGTTGAAGA+TGG | + | chr1.1:6206870-6206889 | MS.gene33028:CDS | 30.0% | |
| CAATAACACAGATCTTACAA+AGG | - | chr1.1:6205755-6205774 | None:intergenic | 30.0% | |
| CATCTTCAACATAAGTTCTT+TGG | - | chr1.1:6206872-6206891 | None:intergenic | 30.0% | |
| GAGTTTATTTGAAGAGCTTA+TGG | - | chr1.1:6207206-6207225 | None:intergenic | 30.0% | |
| GGGTCAACATATGATTATAA+CGG | - | chr1.1:6206712-6206731 | None:intergenic | 30.0% | |
| TAACACTATAACAGTTACAC+AGG | - | chr1.1:6205870-6205889 | None:intergenic | 30.0% | |
| TCATCTTAGTATGCTGTAAT+TGG | + | chr1.1:6206253-6206272 | MS.gene33028:intron | 30.0% | |
| TGATAGTAGTTAGTTCATCA+TGG | + | chr1.1:6206195-6206214 | MS.gene33028:intron | 30.0% | |
| TGTACTACTCTACATTTACA+GGG | + | chr1.1:6205797-6205816 | MS.gene33028:intron | 30.0% | |
| TTTGATCTCTAGCAATGAAT+TGG | + | chr1.1:6205932-6205951 | MS.gene33028:intron | 30.0% | |
| ! | AACATAGATTTGGTTTATGG+TGG | + | chr1.1:6205362-6205381 | MS.gene33028:CDS | 30.0% |
| ! | AACTCTTTGAAGAGTTATTC+AGG | - | chr1.1:6206398-6206417 | None:intergenic | 30.0% |
| ! | AGGAACATAGATTTGGTTTA+TGG | + | chr1.1:6205359-6205378 | MS.gene33028:CDS | 30.0% |
| ! | ATATAAAAGTGTATCTGGGT+AGG | + | chr1.1:6205066-6205085 | MS.gene33028:intron | 30.0% |
| ! | CTTCTGATAATGACCTATTT+GGG | + | chr1.1:6206150-6206169 | MS.gene33028:intron | 30.0% |
| ! | GTGTACAGAAACATTGATTA+AGG | + | chr1.1:6205280-6205299 | MS.gene33028:intron | 30.0% |
| ! | GTTGTTGATTGATATCACTT+TGG | + | chr1.1:6205484-6205503 | MS.gene33028:intron | 30.0% |
| ! | TCTTCTGATAATGACCTATT+TGG | + | chr1.1:6206149-6206168 | MS.gene33028:intron | 30.0% |
| ! | TGTTTTCATATAAGCTATCC+TGG | + | chr1.1:6207127-6207146 | MS.gene33028:intron | 30.0% |
| !! | ACGTTATGATGTTACTTTGT+TGG | + | chr1.1:6206667-6206686 | MS.gene33028:intron | 30.0% |
| !! | ATAGGAGTTTACTGTTTTTC+TGG | + | chr1.1:6207333-6207352 | MS.gene33028:intron | 30.0% |
| !! | CTTATTTTCACAAATTCTCC+AGG | - | chr1.1:6207148-6207167 | None:intergenic | 30.0% |
| !! | TGTTTTATGGTTTGTGTTTC+AGG | + | chr1.1:6205331-6205350 | MS.gene33028:intron | 30.0% |
| !!! | CTATTGATTTTCGTTCTACA+CGG | + | chr1.1:6205903-6205922 | MS.gene33028:intron | 30.0% |
| !!! | GGTTTATTTTGACAGATATC+TGG | + | chr1.1:6206274-6206293 | MS.gene33028:intron | 30.0% |
| AAGCAATTAGGCAATTATCC+AGG | + | chr1.1:6207550-6207569 | MS.gene33028:CDS | 35.0% | |
| AAGGAAGCAGAAAGTTCAAA+AGG | + | chr1.1:6204851-6204870 | MS.gene33028:CDS | 35.0% | |
| AGAACTTATGTTGAAGATGG+AGG | + | chr1.1:6206873-6206892 | MS.gene33028:CDS | 35.0% | |
| AGAGTTATTCAGGTAATACC+AGG | - | chr1.1:6206388-6206407 | None:intergenic | 35.0% | |
| AGGAAGCAGAAAGTTCAAAA+GGG | + | chr1.1:6204852-6204871 | MS.gene33028:CDS | 35.0% | |
| AGTAACCATCAACATTCAGT+AGG | - | chr1.1:6206759-6206778 | None:intergenic | 35.0% | |
| ATTCTATCCTCATAATCAGG+AGG | + | chr1.1:6206574-6206593 | MS.gene33028:intron | 35.0% | |
| CAAAGTTCCTTATATATCGC+AGG | - | chr1.1:6207297-6207316 | None:intergenic | 35.0% | |
| GAGTCTAAATTGATGAATGG+TGG | + | chr1.1:6206983-6207002 | MS.gene33028:intron | 35.0% | |
| GAGTTATTCAGGTAATACCA+GGG | - | chr1.1:6206387-6206406 | None:intergenic | 35.0% | |
| GATTATGAGGATAGAATGGA+GGG | - | chr1.1:6206571-6206590 | None:intergenic | 35.0% | |
| GCAGAGTCTAAATTGATGAA+TGG | + | chr1.1:6206980-6206999 | MS.gene33028:intron | 35.0% | |
| GGTTAAGAGGAACATAGATT+TGG | + | chr1.1:6205352-6205371 | MS.gene33028:intron | 35.0% | |
| GTATGTTAGGGTAATGTCAA+TGG | + | chr1.1:6206091-6206110 | MS.gene33028:intron | 35.0% | |
| TACAAAGGGTCTGTTTGAAT+AGG | - | chr1.1:6205740-6205759 | None:intergenic | 35.0% | |
| TCAAATAAGCCAATCACAAC+AGG | + | chr1.1:6207224-6207243 | MS.gene33028:intron | 35.0% | |
| TCCATTCTATCCTCATAATC+AGG | + | chr1.1:6206571-6206590 | MS.gene33028:intron | 35.0% | |
| TCCTGATTATGAGGATAGAA+TGG | - | chr1.1:6206575-6206594 | None:intergenic | 35.0% | |
| TGAAAGTAACTTGACAGACA+TGG | - | chr1.1:6207096-6207115 | None:intergenic | 35.0% | |
| TGATTATGAGGATAGAATGG+AGG | - | chr1.1:6206572-6206591 | None:intergenic | 35.0% | |
| TTCATCTGCTAATTGAATGG+CGG | - | chr1.1:6204929-6204948 | None:intergenic | 35.0% | |
| TTGCTTGCATTGTTTGACAA+TGG | + | chr1.1:6206787-6206806 | MS.gene33028:CDS | 35.0% | |
| TTTACCTCCTGCGATATATA+AGG | + | chr1.1:6207287-6207306 | MS.gene33028:intron | 35.0% | |
| ! | AATGGAGGGTATGAGAAAAA+AGG | - | chr1.1:6206557-6206576 | None:intergenic | 35.0% |
| ! | ATAGATTTGGTTTATGGTGG+TGG | + | chr1.1:6205365-6205384 | MS.gene33028:CDS | 35.0% |
| ! | GAGCAAATTTTCTCCCAAAT+AGG | - | chr1.1:6206166-6206185 | None:intergenic | 35.0% |
| ! | TTTGACAATGGTGTTGAAGA+AGG | + | chr1.1:6206799-6206818 | MS.gene33028:CDS | 35.0% |
| AAATATCATCCTGCACAGGT+TGG | + | chr1.1:6206733-6206752 | MS.gene33028:intron | 40.0% | |
| AATGGTGGTTGTCATGTTCT+AGG | + | chr1.1:6205428-6205447 | MS.gene33028:CDS | 40.0% | |
| AGCGAGGGTTTATGTATGTT+AGG | + | chr1.1:6206078-6206097 | MS.gene33028:intron | 40.0% | |
| AGTAGCACAAATACCTCATG+CGG | - | chr1.1:6205843-6205862 | None:intergenic | 40.0% | |
| AGTTCCTTATATATCGCAGG+AGG | - | chr1.1:6207294-6207313 | None:intergenic | 40.0% | |
| ATCAGGAGGATATGGAACTA+TGG | + | chr1.1:6206588-6206607 | MS.gene33028:intron | 40.0% | |
| ATGATAACTTGGGCTCAACT+TGG | + | chr1.1:6206625-6206644 | MS.gene33028:CDS | 40.0% | |
| ATGGTGGTTGTCATGTTCTA+GGG | + | chr1.1:6205429-6205448 | MS.gene33028:CDS | 40.0% | |
| GCGAGGGTTTATGTATGTTA+GGG | + | chr1.1:6206079-6206098 | MS.gene33028:intron | 40.0% | |
| TCCATATCCTCCTGATTATG+AGG | - | chr1.1:6206584-6206603 | None:intergenic | 40.0% | |
| TCCTCATAATCAGGAGGATA+TGG | + | chr1.1:6206580-6206599 | MS.gene33028:intron | 40.0% | |
| TGAGAGTCAATAACCCTGTT+TGG | + | chr1.1:6207038-6207057 | MS.gene33028:intron | 40.0% | |
| TTAGGGTAATGTCAATGGAG+CGG | + | chr1.1:6206096-6206115 | MS.gene33028:intron | 40.0% | |
| ! | AAAAGGGTATGTGTCTTCTG+CGG | + | chr1.1:6204868-6204887 | MS.gene33028:CDS | 40.0% |
| ! | ACCTGTGCAGGATGATATTT+TGG | - | chr1.1:6206733-6206752 | None:intergenic | 40.0% |
| ! | AGCTTCTGGAGATGATAACT+TGG | + | chr1.1:6206614-6206633 | MS.gene33028:CDS | 40.0% |
| ! | CATTCTGCATTTTCTTGTCC+TGG | - | chr1.1:6207571-6207590 | None:intergenic | 40.0% |
| ! | CCTGTGCAGGATGATATTTT+GGG | - | chr1.1:6206732-6206751 | None:intergenic | 40.0% |
| ! | GCTTCTGGAGATGATAACTT+GGG | + | chr1.1:6206615-6206634 | MS.gene33028:CDS | 40.0% |
| !! | GGTTTGTGTTTCAGGTTAAG+AGG | + | chr1.1:6205339-6205358 | MS.gene33028:intron | 40.0% |
| ACAACTATACTCCGAGCACT+GGG | - | chr1.1:6206835-6206854 | None:intergenic | 45.0% | |
| AGCTGGCAGATGAAGCAATT+AGG | + | chr1.1:6207538-6207557 | MS.gene33028:CDS | 45.0% | |
| CAGATATCTGGTGAAGCAGT+AGG | + | chr1.1:6206286-6206305 | MS.gene33028:intron | 45.0% | |
| CCCAAAATATCATCCTGCAC+AGG | + | chr1.1:6206729-6206748 | MS.gene33028:intron | 45.0% | |
| GATATAGGGCCTGTTGTGAT+TGG | - | chr1.1:6207236-6207255 | None:intergenic | 45.0% | |
| GATATCACTTTGGCCCTGTT+CGG | + | chr1.1:6205494-6205513 | MS.gene33028:intron | 45.0% | |
| GCATGAGAGAAAAGCTGCAA+TGG | + | chr1.1:6206333-6206352 | MS.gene33028:CDS | 45.0% | |
| GTGAAGCAGTAGGTGAAGTA+AGG | + | chr1.1:6206296-6206315 | MS.gene33028:CDS | 45.0% | |
| TAGGGTAATGTCAATGGAGC+GGG | + | chr1.1:6206097-6206116 | MS.gene33028:intron | 45.0% | |
| TGGAACTATGGAAGAGCTTC+TGG | + | chr1.1:6206600-6206619 | MS.gene33028:CDS | 45.0% | |
| ! | GTTGGCCTACTGAATGTTGA+TGG | + | chr1.1:6206751-6206770 | MS.gene33028:CDS | 45.0% |
| !! | GGTGGAAGTGTTGGATTGAT+GGG | + | chr1.1:6205383-6205402 | MS.gene33028:CDS | 45.0% |
| !! | GTTTATGGTGGTGGAAGTGT+TGG | + | chr1.1:6205374-6205393 | MS.gene33028:CDS | 45.0% |
| !! | TGGTGGAAGTGTTGGATTGA+TGG | + | chr1.1:6205382-6205401 | MS.gene33028:CDS | 45.0% |
| AAAAGCTCTCATGCCGCATG+AGG | + | chr1.1:6205827-6205846 | MS.gene33028:CDS | 50.0% | |
| ACTGAAAACATGGCGGTTGC+CGG | - | chr1.1:6204902-6204921 | None:intergenic | 50.0% | |
| AGGGTAATGTCAATGGAGCG+GGG | + | chr1.1:6206098-6206117 | MS.gene33028:intron | 50.0% | |
| ATGAGGGGCTACATGCTCAT+GGG | - | chr1.1:6207515-6207534 | None:intergenic | 50.0% | |
| GACAACTATACTCCGAGCAC+TGG | - | chr1.1:6206836-6206855 | None:intergenic | 50.0% | |
| GCTTCATTAAGCCCAGTGCT+CGG | + | chr1.1:6206821-6206840 | MS.gene33028:CDS | 50.0% | |
| TCATCTGCCAGCTCTCATGA+GGG | - | chr1.1:6207531-6207550 | None:intergenic | 50.0% | |
| TGCAATGGCTCAAGAAGCTG+AGG | + | chr1.1:6206348-6206367 | MS.gene33028:CDS | 50.0% | |
| TTCATCTGCCAGCTCTCATG+AGG | - | chr1.1:6207532-6207551 | None:intergenic | 50.0% | |
| ! | GAGGCATTTATTGCACTCCC+TGG | + | chr1.1:6206367-6206386 | MS.gene33028:CDS | 50.0% |
| ! | TCATGCGGCATGAGAGCTTT+TGG | - | chr1.1:6205828-6205847 | None:intergenic | 50.0% |
| ATGTAGCCCCTCATGAGAGC+TGG | + | chr1.1:6207521-6207540 | MS.gene33028:CDS | 55.0% | |
| CATCTGCCAGCTCTCATGAG+GGG | - | chr1.1:6207530-6207549 | None:intergenic | 55.0% | |
| CATGAGGGGCTACATGCTCA+TGG | - | chr1.1:6207516-6207535 | None:intergenic | 55.0% | |
| CGGCGTCACTGAAAACATGG+CGG | - | chr1.1:6204909-6204928 | None:intergenic | 55.0% | |
| TGGCGGCGTCACTGAAAACA+TGG | - | chr1.1:6204912-6204931 | None:intergenic | 55.0% | |
| TTCAGTAGGCCAACCTGTGC+AGG | - | chr1.1:6206745-6206764 | None:intergenic | 55.0% | |
| GGGGCTACATGCTCATGGGA+AGG | - | chr1.1:6207511-6207530 | None:intergenic | 60.0% | |
| GTCTTCTGCGGCAGCAACTC+CGG | + | chr1.1:6204880-6204899 | MS.gene33028:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 6204844 | 6207591 | 6204844 | ID=MS.gene33028 |
| chr1.1 | mRNA | 6204844 | 6207591 | 6204844 | ID=MS.gene33028.t1;Parent=MS.gene33028 |
| chr1.1 | exon | 6204844 | 6204951 | 6204844 | ID=MS.gene33028.t1.exon1;Parent=MS.gene33028.t1 |
| chr1.1 | CDS | 6204844 | 6204951 | 6204844 | ID=cds.MS.gene33028.t1;Parent=MS.gene33028.t1 |
| chr1.1 | exon | 6205353 | 6205450 | 6205353 | ID=MS.gene33028.t1.exon2;Parent=MS.gene33028.t1 |
| chr1.1 | CDS | 6205353 | 6205450 | 6205353 | ID=cds.MS.gene33028.t1;Parent=MS.gene33028.t1 |
| chr1.1 | exon | 6205818 | 6205848 | 6205818 | ID=MS.gene33028.t1.exon3;Parent=MS.gene33028.t1 |
| chr1.1 | CDS | 6205818 | 6205848 | 6205818 | ID=cds.MS.gene33028.t1;Parent=MS.gene33028.t1 |
| chr1.1 | exon | 6206289 | 6206388 | 6206289 | ID=MS.gene33028.t1.exon4;Parent=MS.gene33028.t1 |
| chr1.1 | CDS | 6206289 | 6206388 | 6206289 | ID=cds.MS.gene33028.t1;Parent=MS.gene33028.t1 |
| chr1.1 | exon | 6206593 | 6206663 | 6206593 | ID=MS.gene33028.t1.exon5;Parent=MS.gene33028.t1 |
| chr1.1 | CDS | 6206593 | 6206663 | 6206593 | ID=cds.MS.gene33028.t1;Parent=MS.gene33028.t1 |
| chr1.1 | exon | 6206751 | 6206894 | 6206751 | ID=MS.gene33028.t1.exon6;Parent=MS.gene33028.t1 |
| chr1.1 | CDS | 6206751 | 6206894 | 6206751 | ID=cds.MS.gene33028.t1;Parent=MS.gene33028.t1 |
| chr1.1 | exon | 6207499 | 6207591 | 6207499 | ID=MS.gene33028.t1.exon7;Parent=MS.gene33028.t1 |
| chr1.1 | CDS | 6207499 | 6207591 | 6207499 | ID=cds.MS.gene33028.t1;Parent=MS.gene33028.t1 |
| Gene Sequence |
| Protein sequence |
