AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene035916

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene035916.t1 MTR_5g062430 97.315 782 21 0 1 782 1 782 0.0 1589
MS.gene035916.t1 MTR_5g062320 90.932 783 67 2 1 782 1 780 0.0 1469
MS.gene035916.t1 MTR_5g062370 90.641 780 73 0 1 780 1 780 0.0 1456
MS.gene035916.t1 MTR_5g062650 85.987 785 107 2 1 782 1 785 0.0 1390
MS.gene035916.t1 MTR_3g074060 70.000 780 227 3 4 782 3 776 0.0 1174
MS.gene035916.t1 MTR_5g062370 89.267 587 63 0 1 587 1 587 0.0 1100
MS.gene035916.t1 MTR_5g030860 48.162 789 375 12 11 782 11 782 0.0 759
MS.gene035916.t1 MTR_1g106860 49.100 778 366 13 3 772 4 759 0.0 748
MS.gene035916.t1 MTR_2g034720 47.321 784 379 11 1 780 1 754 0.0 738
MS.gene035916.t1 MTR_2g008240 47.201 786 385 13 6 782 11 775 0.0 731
MS.gene035916.t1 MTR_1g087240 46.649 776 384 11 10 780 5 755 0.0 723
MS.gene035916.t1 MTR_7g109390 47.410 753 369 12 36 780 28 761 0.0 723
MS.gene035916.t1 MTR_4g094285 46.252 787 383 14 10 782 14 774 0.0 720
MS.gene035916.t1 MTR_6g028090 27.607 652 337 27 57 638 35 621 7.13e-41 159
MS.gene035916.t1 MTR_6g028120 27.273 660 351 30 46 638 5 602 1.52e-40 158
MS.gene035916.t1 MTR_3g462820 26.866 603 349 22 50 595 22 589 7.37e-40 156
MS.gene035916.t1 MTR_2g030000 27.417 631 331 27 57 613 37 614 4.18e-39 154
MS.gene035916.t1 MTR_3g079750 26.923 650 356 28 57 644 35 627 9.95e-39 153
MS.gene035916.t1 MTR_6g028100 27.412 653 337 30 57 638 35 621 1.61e-38 152
MS.gene035916.t1 MTR_7g086030 27.327 666 335 29 50 638 4 597 3.40e-38 151
MS.gene035916.t1 MTR_7g086030 27.477 666 334 29 50 638 29 622 5.07e-38 151
MS.gene035916.t1 MTR_6g028110 26.900 658 342 31 57 642 36 626 1.27e-37 150
MS.gene035916.t1 MTR_6g028110 26.596 658 344 31 57 642 36 626 2.61e-37 149
MS.gene035916.t1 MTR_5g069800 25.331 604 354 22 52 595 7 573 6.62e-35 141
MS.gene035916.t1 MTR_5g069740 25.084 594 346 21 57 595 12 561 2.21e-30 127
MS.gene035916.t1 MTR_7g086010 26.339 448 245 18 50 436 29 452 6.25e-24 106
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene035916.t1 AT1G78060 64.011 753 260 7 34 782 22 767 0.0 1013
MS.gene035916.t1 AT5G10560 48.496 798 382 8 4 780 1 790 0.0 788
MS.gene035916.t1 AT3G19620 49.933 747 349 14 36 772 27 758 0.0 748
MS.gene035916.t1 AT5G09730 48.469 784 380 14 4 782 9 773 0.0 741
MS.gene035916.t1 AT5G64570 48.793 787 372 14 5 782 20 784 0.0 734
MS.gene035916.t1 AT1G02640 46.947 786 373 12 8 781 6 759 0.0 727
MS.gene035916.t1 AT5G49360 47.564 780 376 17 11 780 14 770 0.0 711
MS.gene035916.t1 AT5G64570 52.151 581 268 8 12 590 20 592 0.0 610
MS.gene035916.t1 AT5G64570 48.986 641 304 11 150 782 1 626 0.0 608
MS.gene035916.t1 AT5G09700 44.990 489 256 7 300 782 45 526 3.86e-135 411
MS.gene035916.t1 AT3G47040 27.019 644 372 26 50 641 10 607 4.67e-43 166
MS.gene035916.t1 AT3G47010 26.677 626 363 27 47 613 8 596 4.49e-41 160
MS.gene035916.t1 AT3G47040 26.324 661 380 27 50 641 10 632 2.17e-40 158
MS.gene035916.t1 AT3G47000 26.480 642 372 25 50 638 10 604 1.35e-39 155
MS.gene035916.t1 AT3G47010 26.518 626 363 28 47 613 8 595 1.66e-39 155
MS.gene035916.t1 AT3G47050 26.885 610 351 23 46 597 6 578 4.68e-38 151
MS.gene035916.t1 AT5G04885 24.960 625 363 24 56 617 36 617 1.48e-35 144
MS.gene035916.t1 AT5G04885 24.960 625 363 24 56 617 36 617 1.48e-35 144
MS.gene035916.t1 AT5G04885 24.960 625 363 24 56 617 53 634 1.48e-35 144
MS.gene035916.t1 AT3G47040 29.885 435 238 17 50 436 10 425 3.41e-34 137
MS.gene035916.t1 AT5G20950 28.019 414 227 16 60 424 36 427 6.01e-32 132
MS.gene035916.t1 AT5G20950 28.019 414 227 16 60 424 36 427 6.01e-32 132
MS.gene035916.t1 AT3G47000 29.078 423 232 16 50 424 10 412 6.23e-32 130
MS.gene035916.t1 AT5G20950 28.019 414 227 16 60 424 114 505 7.83e-32 132
MS.gene035916.t1 AT3G47010 27.938 451 251 19 47 448 8 433 2.62e-31 128
MS.gene035916.t1 AT3G47040 25.298 672 381 29 50 641 10 640 3.16e-31 130
MS.gene035916.t1 AT5G20940 26.724 580 327 24 86 637 112 621 1.42e-30 128
MS.gene035916.t1 AT3G62710 25.896 614 347 28 62 637 105 648 7.15e-30 126
MS.gene035916.t1 AT3G47010 26.637 443 270 21 196 613 5 417 2.51e-26 113
MS.gene035916.t1 AT3G47050 27.467 375 214 12 46 377 6 365 1.24e-24 107
MS.gene035916.t1 AT3G47000 25.758 462 289 19 194 638 3 427 4.70e-24 106

Find 192 sgRNAs with CRISPR-Local

Find 376 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAAATTGGAGGGATTATT+TGG 0.068417 5.2:-52581501 MS.gene035916:CDS
AACAACCTTAGATGATTTAT+TGG 0.151178 5.2:+52581867 None:intergenic
AATAAGTGATTATGTTATTT+TGG 0.156153 5.2:-52581695 MS.gene035916:CDS
CACCAAACATAAATATATTT+AGG 0.186343 5.2:-52584935 MS.gene035916:CDS
GCTAAGAATAATGACAAAAT+TGG 0.212120 5.2:-52581514 MS.gene035916:CDS
TTTCCATTTCTACCTTTCTT+TGG 0.223144 5.2:+52580198 None:intergenic
TTCTAAGAAGCCGATTATTT+TGG 0.224961 5.2:-52581572 MS.gene035916:CDS
TTTGAAGGTGGGAAACTAAT+TGG 0.232375 5.2:-52584813 MS.gene035916:CDS
AAATTGTAATCTGCACAATT+TGG 0.238972 5.2:+52583707 None:intergenic
ACACTTTACTGCTTATGATT+TGG 0.254536 5.2:-52584760 MS.gene035916:CDS
AAGCTCAAGGGATGACGTTT+TGG 0.256760 5.2:-52584959 MS.gene035916:CDS
TAGCCGAATTCGTAGACTTT+TGG 0.273287 5.2:+52580453 None:intergenic
TCTTGTCCTCTTCCCCATCT+TGG 0.274411 5.2:+52584909 None:intergenic
GTAAATACCCTTGGAGTTAT+AGG 0.279725 5.2:-52581898 MS.gene035916:CDS
TCAGGTTACTTTGCAAGATT+TGG 0.289491 5.2:-52583819 MS.gene035916:intron
CTGATTCGGTACCAAAGTTT+AGG 0.291395 5.2:+52585337 None:intergenic
TAGATGATTTATTGGCATTA+GGG 0.300640 5.2:+52581875 None:intergenic
TCTTTAGAGCATACTTGATT+TGG 0.301730 5.2:+52582003 None:intergenic
TTAGATGATTTATTGGCATT+AGG 0.311930 5.2:+52581874 None:intergenic
AGATTAGTACCAATATTAAA+AGG 0.321384 5.2:-52581817 MS.gene035916:CDS
CGAGTTGGTGGTAGCGAGTT+AGG 0.322220 5.2:+52585683 None:intergenic
AATCGGCTTCTTAGAAGCTT+TGG 0.334665 5.2:+52581579 None:intergenic
CTTGTCCTCTTCCCCATCTT+GGG 0.341529 5.2:+52584910 None:intergenic
TTAAATTGTATGTAGGTGAT+TGG 0.341926 5.2:-52585014 MS.gene035916:intron
CTGCTTATGATTTGGATCAT+TGG 0.343564 5.2:-52584752 MS.gene035916:CDS
TACAAACTTGTTTCAGAGTT+AGG 0.348701 5.2:-52580318 MS.gene035916:CDS
CACAAAATTACCAAAATAAT+CGG 0.360184 5.2:+52581562 None:intergenic
TATCGTTCTGGATGTCTTGA+TGG 0.362209 5.2:-52581766 MS.gene035916:CDS
TCCCTAAATATATTTATGTT+TGG 0.363155 5.2:+52584933 None:intergenic
TGTACTATGCAACTATGAAA+TGG 0.363228 5.2:+52583779 None:intergenic
TTTGGATCATTGGAAGGGTT+TGG 0.364911 5.2:-52584742 MS.gene035916:CDS
TAATGCCAATAAATCATCTA+AGG 0.365139 5.2:-52581872 MS.gene035916:CDS
GTACTATGCAACTATGAAAT+GGG 0.369757 5.2:+52583780 None:intergenic
TGGTGGAAGGGCTCTTGCTC+AGG 0.371596 5.2:-52581458 MS.gene035916:CDS
AGCCAAACACATTATCGTTC+TGG 0.371977 5.2:-52581778 MS.gene035916:CDS
GGAGGTGGAAAGGGTGAAGT+TGG 0.374363 5.2:-52580132 MS.gene035916:CDS
AAACTACAATATGGCACAAT+TGG 0.375303 5.2:-52582027 MS.gene035916:CDS
GCTCTTGCTCAGGTTGTGTT+TGG 0.377174 5.2:-52581448 MS.gene035916:CDS
CAAAATTGGAGGGATTATTT+GGG 0.380232 5.2:-52581500 MS.gene035916:CDS
GCAAATACTGGAAGCATGGC+TGG 0.385284 5.2:-52580249 MS.gene035916:CDS
CTTCAAGGAGATTCCTTTGA+AGG 0.385860 5.2:-52584828 MS.gene035916:CDS
AATCCAACCAAACTACAATA+TGG 0.391870 5.2:-52582036 MS.gene035916:CDS
ACCAAACATAAATATATTTA+GGG 0.398770 5.2:-52584934 MS.gene035916:CDS
AATTGTGCCATATTGTAGTT+TGG 0.399584 5.2:+52582029 None:intergenic
TTGGTGGTGTCACAGGAGTA+TGG 0.402961 5.2:+52585631 None:intergenic
CAAGCCTAGTCTTATTCTAA+TGG 0.410715 5.2:+52582068 None:intergenic
ACTCCAAGGGTATTTACTCT+TGG 0.414446 5.2:+52581904 None:intergenic
AGATTGAATGGTAGTGTTGC+AGG 0.418124 5.2:-52585406 MS.gene035916:CDS
AACCCTACCAACTGTTTCAC+TGG 0.418928 5.2:+52580174 None:intergenic
AGGTGGTTATTTGTTGGTTG+TGG 0.420306 5.2:-52580043 MS.gene035916:CDS
ACATTGGGAATTGCAAATAC+TGG 0.422016 5.2:-52580261 MS.gene035916:CDS
GTGTTTGGTGACTATAACCC+AGG 0.425278 5.2:-52581433 MS.gene035916:intron
ATAAGACTAGGCTTGTTTGA+TGG 0.425928 5.2:-52582060 MS.gene035916:CDS
ATTATTTGGGCTGGTTATCC+TGG 0.427506 5.2:-52581487 MS.gene035916:CDS
AGGAATAATTTGAGTAGCTT+AGG 0.431887 5.2:+52580427 None:intergenic
GGTCCAAAAGTCTACGAATT+CGG 0.432398 5.2:-52580456 MS.gene035916:CDS
ATCCAGAACGATAATGTGTT+TGG 0.439275 5.2:+52581776 None:intergenic
AAGCCAAAGAAAGGTAGAAA+TGG 0.439382 5.2:-52580201 MS.gene035916:CDS
TCCTATGTAAGAGGACTTCA+AGG 0.442093 5.2:-52584843 MS.gene035916:CDS
CTCATTCTCATGTCTGTCAT+TGG 0.443342 5.2:+52580528 None:intergenic
TTTGAGAGTGTGACGGTGGA+AGG 0.447503 5.2:-52580153 MS.gene035916:CDS
CTTCCTTTGATCCTAAACTT+TGG 0.447982 5.2:-52585348 MS.gene035916:CDS
TGAAGAAGGTGGTTATTTGT+TGG 0.451987 5.2:-52580049 MS.gene035916:CDS
TATGCTGTTTCCTATGTAAG+AGG 0.453127 5.2:-52584852 MS.gene035916:CDS
TTGCTCTTTGAGTGATGGTA+AGG 0.457578 5.2:+52585572 None:intergenic
ATAAGTTCTTGCTGCTTACC+AGG 0.458334 5.2:+52581613 None:intergenic
AGTTACTAACCTTACTGATT+CGG 0.458447 5.2:+52585323 None:intergenic
AATTAGTTTCCCACCTTCAA+AGG 0.461085 5.2:+52584815 None:intergenic
ATGTCGATTTCTGTCACATT+GGG 0.462961 5.2:-52580276 MS.gene035916:CDS
TAAGACTAGGCTTGTTTGAT+GGG 0.462964 5.2:-52582059 MS.gene035916:CDS
TTAGCAAAAGTAATATCAAC+AGG 0.467973 5.2:+52581532 None:intergenic
ACGGTGGAAGGAGGTGGAAA+GGG 0.469710 5.2:-52580141 MS.gene035916:CDS
TTATTTGTTGGTTGTGGGAG+AGG 0.471909 5.2:-52580037 MS.gene035916:CDS
GCACGGTCGATTTGAGATAT+CGG 0.478301 5.2:+52582108 None:intergenic
TATATTTAGGGACCCAAGAT+GGG 0.488625 5.2:-52584922 MS.gene035916:CDS
GACAGCTGGAGAAGATCCTT+TGG 0.489521 5.2:-52584886 MS.gene035916:CDS
CATGTCGATTTCTGTCACAT+TGG 0.490000 5.2:-52580277 MS.gene035916:CDS
GGTGGTTATTTGTTGGTTGT+GGG 0.491601 5.2:-52580042 MS.gene035916:CDS
GCCCTTCCACCAAGTTCGCC+AGG 0.492748 5.2:+52581469 None:intergenic
CAAGGAGATTCCTTTGAAGG+TGG 0.495290 5.2:-52584825 MS.gene035916:CDS
GCTGGTTATCCTGGCGAACT+TGG 0.496905 5.2:-52581478 MS.gene035916:CDS
GGTGTTGCTAATGCTGGTAA+AGG 0.497484 5.2:-52585433 MS.gene035916:CDS
GTATAGAATGAGTGGTTGAT+TGG 0.501080 5.2:+52580364 None:intergenic
GGTTATCCTGGCGAACTTGG+TGG 0.501374 5.2:-52581475 MS.gene035916:CDS
GTGTTGCTAATGCTGGTAAA+GGG 0.502533 5.2:-52585432 MS.gene035916:CDS
GGTTACTTTGCAAGATTTGG+CGG 0.503836 5.2:-52583816 MS.gene035916:CDS
CTGTTTGTGAAGCCAAAGAA+AGG 0.504938 5.2:-52580210 MS.gene035916:CDS
GACGGTGGAAGGAGGTGGAA+AGG 0.507657 5.2:-52580142 MS.gene035916:CDS
TTATGATTTGGATCATTGGA+AGG 0.509513 5.2:-52584748 MS.gene035916:CDS
AAGAATAATGACAAAATTGG+AGG 0.510297 5.2:-52581511 MS.gene035916:CDS
ATGAGAGCTGATCCATCATC+AGG 0.511303 5.2:-52580510 MS.gene035916:CDS
AGGGATGATTTAGAGTTGCC+TGG 0.511323 5.2:-52581631 MS.gene035916:CDS
GTAGAAACGGTAGGTTCTAC+CGG 0.511605 5.2:+52580482 None:intergenic
GTACCAAAGTTTAGGATCAA+AGG 0.513099 5.2:+52585345 None:intergenic
CGGTATACCGAGTCGAGGAA+TGG 0.513844 5.2:+52585486 None:intergenic
GGTAAAGGGATAAGATTGAA+TGG 0.517556 5.2:-52585418 MS.gene035916:CDS
CTACCGGGATAGCCTGATGA+TGG 0.517596 5.2:+52580498 None:intergenic
TGGTTGATTGGTTGATGTGA+AGG 0.520554 5.2:+52580376 None:intergenic
ACATCAGCTACAGCATCCTC+TGG 0.521946 5.2:+52583147 None:intergenic
CAGCTTCAAGAGCAACGTCT+AGG 0.524868 5.2:+52581977 None:intergenic
AAGTGGGTTGGTGGTGTCAC+AGG 0.526196 5.2:+52585624 None:intergenic
ATATATTTAGGGACCCAAGA+TGG 0.528065 5.2:-52584923 MS.gene035916:CDS
TGTGCTTACAACCGTGTCAA+TGG 0.530376 5.2:-52583734 MS.gene035916:CDS
CTTCCAAGAGTAAATACCCT+TGG 0.531258 5.2:-52581907 MS.gene035916:CDS
ACTTTGGTACCGAATCAGTA+AGG 0.534412 5.2:-52585332 MS.gene035916:intron
ATACCGAGTCGAGGAATGGC+AGG 0.534851 5.2:+52585490 None:intergenic
AGGTACATGAGTTGGTGAAT+CGG 0.536822 5.2:+52585654 None:intergenic
AAAGTCTACGAATTCGGCTA+TGG 0.537086 5.2:-52580450 MS.gene035916:CDS
AAGAGAGGGAATCACGCGAT+AGG 0.539538 5.2:-52581651 MS.gene035916:CDS
AGGGTATTTACTCTTGGAAG+CGG 0.539975 5.2:+52581910 None:intergenic
ATCCTGGCGAACTTGGTGGA+AGG 0.540336 5.2:-52581471 MS.gene035916:CDS
TTTGACAGAAATGAAGCTGT+AGG 0.540446 5.2:+52580407 None:intergenic
ATCCAGTGAAACAGTTGGTA+GGG 0.542668 5.2:-52580176 MS.gene035916:CDS
GATCCATCATCAGGCTATCC+CGG 0.542828 5.2:-52580501 MS.gene035916:CDS
GTGCCATATTGTAGTTTGGT+TGG 0.544330 5.2:+52582033 None:intergenic
GGCTTCACAAACAGCAACAC+AGG 0.545539 5.2:+52580219 None:intergenic
AGAATCATATATGATAATCA+AGG 0.545803 5.2:-52583183 MS.gene035916:CDS
TCTTGGAAGCGGGAGAATTG+AGG 0.545957 5.2:+52581921 None:intergenic
GGTGTCAAGGTGGTTGAAGA+AGG 0.548262 5.2:-52580063 MS.gene035916:CDS
ATTGGAGGGATTATTTGGGC+TGG 0.549271 5.2:-52581496 MS.gene035916:CDS
TACAATGCTGGACAAGCTCA+AGG 0.550917 5.2:-52584972 MS.gene035916:CDS
AAGGAGATTCCTTTGAAGGT+GGG 0.551664 5.2:-52584824 MS.gene035916:CDS
AGAGAGGGAATCACGCGATA+GGG 0.553307 5.2:-52581650 MS.gene035916:CDS
GGAAGAGGACAAGAGACAGC+TGG 0.554566 5.2:-52584900 MS.gene035916:CDS
GGGTATTTACTCTTGGAAGC+GGG 0.555910 5.2:+52581911 None:intergenic
AATGGTGAATAGATTGTGTA+GGG 0.557476 5.2:+52582086 None:intergenic
TTTCATAGTTGCATAGTACA+AGG 0.561138 5.2:-52583776 MS.gene035916:CDS
AATCCAGTGAAACAGTTGGT+AGG 0.561271 5.2:-52580177 MS.gene035916:CDS
GCAAGAGGAGTATACAATGC+TGG 0.561312 5.2:-52584984 MS.gene035916:CDS
AGAGATGAAAGCAATGGTGA+TGG 0.561678 5.2:+52585720 None:intergenic
AATATTGGTACTAATCTACA+AGG 0.562148 5.2:+52581823 None:intergenic
GTTGAGATTGCAGAATGGAA+AGG 0.562893 5.2:+52585594 None:intergenic
AGGGACCCAAGATGGGGAAG+AGG 0.563005 5.2:-52584915 MS.gene035916:CDS
TCGGTATACCGAGTTATCAA+TGG 0.563582 5.2:-52585474 MS.gene035916:CDS
TCCTTGAAGTCCTCTTACAT+AGG 0.571602 5.2:+52584842 None:intergenic
GCTCTTGAAGCTGCAAGAAG+TGG 0.571675 5.2:-52581967 MS.gene035916:CDS
CAAATACTGGAAGCATGGCT+GGG 0.572025 5.2:-52580248 MS.gene035916:CDS
TCATCCCACCATTGATAACT+CGG 0.573649 5.2:+52585466 None:intergenic
GAGAGTGTGACGGTGGAAGG+AGG 0.575492 5.2:-52580150 MS.gene035916:CDS
TAATGGTGAATAGATTGTGT+AGG 0.575658 5.2:+52582085 None:intergenic
TGGACCTGTGTAGAAACGGT+AGG 0.576368 5.2:+52580473 None:intergenic
TATGATTTGGATCATTGGAA+GGG 0.576733 5.2:-52584747 MS.gene035916:CDS
AGTGTGACGGTGGAAGGAGG+TGG 0.578214 5.2:-52580147 MS.gene035916:CDS
TCCTGGCGAACTTGGTGGAA+GGG 0.579528 5.2:-52581470 MS.gene035916:CDS
AGCAAATGAGAGTGGTGTCA+AGG 0.581128 5.2:-52580076 MS.gene035916:CDS
CATTGTGTCACGGCTCACAT+TGG 0.582035 5.2:-52585545 MS.gene035916:CDS
TTGCACGGTGTTGCTAATGC+TGG 0.589612 5.2:-52585439 MS.gene035916:CDS
ACTCTGAAACAAGTTTGTAA+CGG 0.590668 5.2:+52580322 None:intergenic
AATCGGCATGAACGAGTTGG+TGG 0.594003 5.2:+52585671 None:intergenic
GTAGCTGATGTACTTCAAGC+TGG 0.594292 5.2:-52583135 MS.gene035916:intron
CATTAGGGCCTATAACTCCA+AGG 0.594911 5.2:+52581890 None:intergenic
TACTATGCAACTATGAAATG+GGG 0.595239 5.2:+52583781 None:intergenic
AATGAAAGAGATGAAAGCAA+TGG 0.596045 5.2:+52585714 None:intergenic
AGAATAATGACAAAATTGGA+GGG 0.611667 5.2:-52581510 MS.gene035916:CDS
AGAACCTACCGTTTCTACAC+AGG 0.612051 5.2:-52580477 MS.gene035916:CDS
GTCAAGGTGGTTGAAGAAGG+TGG 0.614362 5.2:-52580060 MS.gene035916:CDS
GAGTATGGAGGTACATGAGT+TGG 0.615620 5.2:+52585646 None:intergenic
TGGAAATCCAGTGAAACAGT+TGG 0.620701 5.2:-52580181 MS.gene035916:CDS
GTATACCGAGTTATCAATGG+TGG 0.623082 5.2:-52585471 MS.gene035916:CDS
GCTCCTGCCATTCCTCGACT+CGG 0.625159 5.2:-52585493 MS.gene035916:CDS
TGAATAGATTGTGTAGGGCA+CGG 0.634890 5.2:+52582091 None:intergenic
GGTAGGGTTTGAGAGTGTGA+CGG 0.635292 5.2:-52580160 MS.gene035916:CDS
ATTGGATCAAAGTCAAGAGA+GGG 0.636383 5.2:-52581665 MS.gene035916:CDS
TCAGGGATGGATGTAGAGTG+TGG 0.638212 5.2:-52582180 MS.gene035916:intron
AATTTGGAACTCCATTGACA+CGG 0.638503 5.2:+52583723 None:intergenic
AGGGTTTGAGAGTGTGACGG+TGG 0.638866 5.2:-52580157 MS.gene035916:CDS
ATAGTACAAGGACGGTCTAG+TGG 0.639813 5.2:-52583764 MS.gene035916:CDS
CAATGTGACAGAAATCGACA+TGG 0.640085 5.2:+52580278 None:intergenic
TAAAATCAGGTATATTACGT+CGG 0.641041 5.2:-52583220 MS.gene035916:intron
GTAAGGTTGAGATTGCAGAA+TGG 0.642723 5.2:+52585589 None:intergenic
AATTGCAAATACTGGAAGCA+TGG 0.643013 5.2:-52580253 MS.gene035916:CDS
GTGAATCGGCATGAACGAGT+TGG 0.643992 5.2:+52585668 None:intergenic
GTGATTGGAACTGAGGCAAG+AGG 0.644411 5.2:-52584999 MS.gene035916:CDS
ATAGTTGCATAGTACAAGGA+CGG 0.645766 5.2:-52583772 MS.gene035916:CDS
TAGAAACGGTAGGTTCTACC+GGG 0.648311 5.2:+52580483 None:intergenic
CTTAGTAGAGCAAATGAGAG+TGG 0.648348 5.2:-52580084 MS.gene035916:CDS
GAGCAAAAGACATTGTGTCA+CGG 0.656445 5.2:-52585555 MS.gene035916:CDS
TTACTTGACAAAGCATGCAA+AGG 0.657304 5.2:-52582154 MS.gene035916:CDS
GATTGGATCAAAGTCAAGAG+AGG 0.658616 5.2:-52581666 MS.gene035916:CDS
ATTAGGGCCTATAACTCCAA+GGG 0.662705 5.2:+52581891 None:intergenic
ACAATGCTGGACAAGCTCAA+GGG 0.664494 5.2:-52584971 MS.gene035916:CDS
TTGGTACTAATCTACAAGGA+CGG 0.668059 5.2:+52581827 None:intergenic
TATACCGAGTTATCAATGGT+GGG 0.671346 5.2:-52585470 MS.gene035916:CDS
TGGTGGGATGAAGCGTTGCA+CGG 0.676038 5.2:-52585454 MS.gene035916:CDS
TATGTAGGTGATTGGAACTG+AGG 0.676313 5.2:-52585006 MS.gene035916:intron
ATATTTAGGGACCCAAGATG+GGG 0.681751 5.2:-52584921 MS.gene035916:CDS
TTCACCATTAGAATAAGACT+AGG 0.688029 5.2:-52582072 MS.gene035916:CDS
TAACTCGGTATACCGAGTCG+AGG 0.711678 5.2:+52585481 None:intergenic
GTGGTGTCACAGGAGTATGG+AGG 0.712071 5.2:+52585634 None:intergenic
GCAGCAGTAAGAATAACTTG+AGG 0.719067 5.2:+52585370 None:intergenic
AAATGAGAGTGGTGTCAAGG+TGG 0.736902 5.2:-52580073 MS.gene035916:CDS
ACTATGCAACTATGAAATGG+GGG 0.744455 5.2:+52583782 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTTTTATTTTATATT+GGG - chr5.2:52584675-52584694 MS.gene035916:intron 0.0%
!!! TAATTTTTTTTATTTTATAT+TGG - chr5.2:52584674-52584693 MS.gene035916:intron 0.0%
!! ACAAAATTGAAATAATTATA+AGG + chr5.2:52582135-52582154 None:intergenic 10.0%
!! ATATTGTTTAATTCTTATAA+GGG + chr5.2:52582287-52582306 None:intergenic 10.0%
!! CAAAATTGAAATAATTATAA+GGG + chr5.2:52582134-52582153 None:intergenic 10.0%
!! TATATTGTTTAATTCTTATA+AGG + chr5.2:52582288-52582307 None:intergenic 10.0%
!!! AATATGAGATTTTATTTTTT+TGG - chr5.2:52582680-52582699 MS.gene035916:intron 10.0%
!! AATATTTAGTTAAGCAAAAA+GGG - chr5.2:52584643-52584662 MS.gene035916:intron 15.0%
!! ACCAAACATAAATATATTTA+GGG - chr5.2:52580807-52580826 MS.gene035916:intron 15.0%
!! AGTACTATTTATTATAATCA+AGG - chr5.2:52583510-52583529 MS.gene035916:intron 15.0%
!! ATCTTAATTAAATTGTATGT+AGG - chr5.2:52580720-52580739 MS.gene035916:intron 15.0%
!! GAAATTAAAAAATGACAAAT+AGG - chr5.2:52581594-52581613 MS.gene035916:CDS 15.0%
!! TAATATTTAGTTAAGCAAAA+AGG - chr5.2:52584642-52584661 MS.gene035916:intron 15.0%
!! TATTGTTTAATTCTTATAAG+GGG + chr5.2:52582286-52582305 None:intergenic 15.0%
!!! AAAATGTAAATTTTATACGA+AGG - chr5.2:52582258-52582277 MS.gene035916:intron 15.0%
!!! AATAAGTGATTATGTTATTT+TGG - chr5.2:52584046-52584065 MS.gene035916:intron 15.0%
!!! AGTTTAAAGATTTTAGTTTT+TGG - chr5.2:52580514-52580533 MS.gene035916:CDS 15.0%
!!! CTTATTTATAAGAGAAATTT+TGG - chr5.2:52581263-52581282 MS.gene035916:intron 15.0%
!!! GATTAATAAGAATGATTTTT+TGG - chr5.2:52582495-52582514 MS.gene035916:intron 15.0%
!!! TATTAAATCAACTATTCTTT+TGG + chr5.2:52581572-52581591 None:intergenic 15.0%
!! AAAAATAAGTATGAGGTAAA+GGG + chr5.2:52582944-52582963 None:intergenic 20.0%
!! AAATGTAGAAATGATATTTG+AGG - chr5.2:52581201-52581220 MS.gene035916:intron 20.0%
!! AACTAAAATGCAAAATGATA+AGG + chr5.2:52583160-52583179 None:intergenic 20.0%
!! AACTATTATTACTCAACTAA+TGG - chr5.2:52585112-52585131 MS.gene035916:intron 20.0%
!! AATTCAAAATGTGAAACAAA+AGG + chr5.2:52581724-52581743 None:intergenic 20.0%
!! ACAGATAAAAACACATAATA+TGG - chr5.2:52584359-52584378 MS.gene035916:intron 20.0%
!! ACTATTATTACTCAACTAAT+GGG - chr5.2:52585113-52585132 MS.gene035916:intron 20.0%
!! AGAATCATATATGATAATCA+AGG - chr5.2:52582558-52582577 MS.gene035916:intron 20.0%
!! AGATTAGTACCAATATTAAA+AGG - chr5.2:52583924-52583943 MS.gene035916:intron 20.0%
!! ATATACTTGAAAAAGTTATC+TGG + chr5.2:52585084-52585103 None:intergenic 20.0%
!! ATTATCTAACTCTATATCAA+TGG - chr5.2:52582718-52582737 MS.gene035916:intron 20.0%
!! ATTTAGTTGTGTTTACTAAA+TGG + chr5.2:52584745-52584764 None:intergenic 20.0%
!! ATTTCTCTTATAAATAAGAC+CGG + chr5.2:52581261-52581280 None:intergenic 20.0%
!! CACAAAATTACCAAAATAAT+CGG + chr5.2:52584182-52584201 None:intergenic 20.0%
!! CACATAATATGGTAAAAAAA+TGG - chr5.2:52584370-52584389 MS.gene035916:intron 20.0%
!! CACCAAACATAAATATATTT+AGG - chr5.2:52580806-52580825 MS.gene035916:intron 20.0%
!! CTTAAAATGAATTTCAAACA+TGG + chr5.2:52580452-52580471 None:intergenic 20.0%
!! GTTAATAGATGTATAAACAA+AGG + chr5.2:52582647-52582666 None:intergenic 20.0%
!! TATACTTGAAAAAGTTATCT+GGG + chr5.2:52585083-52585102 None:intergenic 20.0%
!! TCAACGAAATTTAATGTATT+TGG - chr5.2:52581286-52581305 MS.gene035916:intron 20.0%
!! TCCCTAAATATATTTATGTT+TGG + chr5.2:52580811-52580830 None:intergenic 20.0%
!! TGAAAAACATTGTTTCATAA+AGG + chr5.2:52582324-52582343 None:intergenic 20.0%
!!! AGAAAATAGTCTTCATTTTA+TGG + chr5.2:52584911-52584930 None:intergenic 20.0%
!!! AGTTGAGTAATAATAGTTTT+AGG + chr5.2:52585110-52585129 None:intergenic 20.0%
!!! ATAAGCAATGTTTTAAATTG+TGG + chr5.2:52585015-52585034 None:intergenic 20.0%
!!! ATTATTTTGGTAATTTTGTG+CGG - chr5.2:52584182-52584201 MS.gene035916:intron 20.0%
!!! CTAATTGAAAGAAAGTTTTT+AGG + chr5.2:52582905-52582924 None:intergenic 20.0%
!!! GATTATGTTATTTTGGTTAT+GGG - chr5.2:52584053-52584072 MS.gene035916:intron 20.0%
!!! GTATTTTGATGAAATCTTTT+GGG + chr5.2:52585194-52585213 None:intergenic 20.0%
!!! GTGTAAAATCCTTTTAATAT+TGG + chr5.2:52583936-52583955 None:intergenic 20.0%
!!! TGATTATGTTATTTTGGTTA+TGG - chr5.2:52584052-52584071 MS.gene035916:intron 20.0%
! AAACTAAACAAACAAGAACT+TGG + chr5.2:52581675-52581694 None:intergenic 25.0%
! AAATAGTACTTGTGTATGTT+TGG + chr5.2:52583500-52583519 None:intergenic 25.0%
! AAATATGTAGCTTCAAAAAG+AGG + chr5.2:52582423-52582442 None:intergenic 25.0%
! AAATTGTAATCTGCACAATT+TGG + chr5.2:52582037-52582056 None:intergenic 25.0%
! AACAACCTTAGATGATTTAT+TGG + chr5.2:52583877-52583896 None:intergenic 25.0%
! AAGAATAATGACAAAATTGG+AGG - chr5.2:52584230-52584249 MS.gene035916:intron 25.0%
! AATATTGGTACTAATCTACA+AGG + chr5.2:52583921-52583940 None:intergenic 25.0%
! ACGGATTTGGATTATTTAAA+TGG + chr5.2:52581893-52581912 None:intergenic 25.0%
! AGAATAATGACAAAATTGGA+GGG - chr5.2:52584231-52584250 MS.gene035916:intron 25.0%
! AGACAAAAATGGAATTTCAA+TGG - chr5.2:52582073-52582092 MS.gene035916:CDS 25.0%
! AGTAACCTGAATTATTAGAA+CGG + chr5.2:52581912-52581931 None:intergenic 25.0%
! ATCACGAGAATTAAAAAAGT+TGG - chr5.2:52583009-52583028 MS.gene035916:intron 25.0%
! ATGTATAAACTTCGTAGATT+TGG - chr5.2:52584595-52584614 MS.gene035916:intron 25.0%
! CAATTATCTTTAGTCATGTT+AGG - chr5.2:52581538-52581557 MS.gene035916:CDS 25.0%
! CCAAACATTCTCTTATAAAT+AGG - chr5.2:52581345-52581364 MS.gene035916:intron 25.0%
! CCTATTTATAAGAGAATGTT+TGG + chr5.2:52581348-52581367 None:intergenic 25.0%
! GAAAAATAAGTATGAGGTAA+AGG + chr5.2:52582945-52582964 None:intergenic 25.0%
! GACAAAAATGGAATTTCAAT+GGG - chr5.2:52582074-52582093 MS.gene035916:CDS 25.0%
! GCTAAGAATAATGACAAAAT+TGG - chr5.2:52584227-52584246 MS.gene035916:intron 25.0%
! GCTCTTACAAATTACAAAAT+TGG - chr5.2:52582182-52582201 MS.gene035916:intron 25.0%
! TAAAATCAGGTATATTACGT+CGG - chr5.2:52582521-52582540 MS.gene035916:intron 25.0%
! TAATGCCAATAAATCATCTA+AGG - chr5.2:52583869-52583888 MS.gene035916:intron 25.0%
! TAGATGATTTATTGGCATTA+GGG + chr5.2:52583869-52583888 None:intergenic 25.0%
! TGGATCAATCTTAATTATCA+TGG + chr5.2:52583238-52583257 None:intergenic 25.0%
! TTAAATTGTATGTAGGTGAT+TGG - chr5.2:52580727-52580746 MS.gene035916:intron 25.0%
! TTAGATGATTTATTGGCATT+AGG + chr5.2:52583870-52583889 None:intergenic 25.0%
! TTAGCAAAAGTAATATCAAC+AGG + chr5.2:52584212-52584231 None:intergenic 25.0%
! TTTCTCTTATAAATAAGACC+GGG + chr5.2:52581260-52581279 None:intergenic 25.0%
!! AAAAGTTCACTTTCACATTT+TGG + chr5.2:52582461-52582480 None:intergenic 25.0%
!! AATGTTTTTCACTCTATTGA+AGG - chr5.2:52582333-52582352 MS.gene035916:intron 25.0%
!! AGTAAGTTTTCTTTTCTCTA+TGG - chr5.2:52581044-52581063 MS.gene035916:intron 25.0%
!! CGAAGTTTATACATGTTTTA+AGG + chr5.2:52584589-52584608 None:intergenic 25.0%
!! CTTTTGCATCAAAATCAAAA+CGG + chr5.2:52581026-52581045 None:intergenic 25.0%
!! GGGAATGGATATAATAATTT+TGG + chr5.2:52585063-52585082 None:intergenic 25.0%
!! TATTTTATATTGGGAGACAA+GGG - chr5.2:52584684-52584703 MS.gene035916:intron 25.0%
!! TGTCTTAATTTTACACAATG+TGG - chr5.2:52583287-52583306 MS.gene035916:intron 25.0%
!! TTGTGTAATCAAACTTTTCA+GGG - chr5.2:52583544-52583563 MS.gene035916:intron 25.0%
!!! AAATCATCTAAGGTTGTTTT+AGG - chr5.2:52583879-52583898 MS.gene035916:intron 25.0%
!!! AGTATGCTATTTAATTTGCT+TGG + chr5.2:52582803-52582822 None:intergenic 25.0%
!!! ATGCTTTGTTATTTAATCAC+TGG - chr5.2:52585136-52585155 MS.gene035916:intron 25.0%
!!! CATTTTAGTTGTTTAAGTTC+TGG - chr5.2:52583114-52583133 MS.gene035916:intron 25.0%
!!! GATTTTTTGGTGTTAAAATC+AGG - chr5.2:52582508-52582527 MS.gene035916:intron 25.0%
!!! GCATATTTTGAATTTACCAA+AGG + chr5.2:52580874-52580893 None:intergenic 25.0%
!!! GGTATTTTGATGAAATCTTT+TGG + chr5.2:52585195-52585214 None:intergenic 25.0%
!!! TATACATGTTTTAAGGATCT+TGG + chr5.2:52584582-52584601 None:intergenic 25.0%
!!! TATGTGTTTTTATCTGTCAA+TGG + chr5.2:52584356-52584375 None:intergenic 25.0%
!!! TTAACAAAAGTTGATGTATC+TGG + chr5.2:52581325-52581344 None:intergenic 25.0%
!!! TTATTTTATATTGGGAGACA+AGG - chr5.2:52584683-52584702 MS.gene035916:intron 25.0%
AAACTACAATATGGCACAAT+TGG - chr5.2:52583714-52583733 MS.gene035916:CDS 30.0%
AATCCAACCAAACTACAATA+TGG - chr5.2:52583705-52583724 MS.gene035916:CDS 30.0%
AATGAAAGAGATGAAAGCAA+TGG + chr5.2:52580030-52580049 None:intergenic 30.0%
AATGGTGAATAGATTGTGTA+GGG + chr5.2:52583658-52583677 None:intergenic 30.0%
AATTGTGCCATATTGTAGTT+TGG + chr5.2:52583715-52583734 None:intergenic 30.0%
ACAAAATTGGAGGGATTATT+TGG - chr5.2:52584240-52584259 MS.gene035916:intron 30.0%
ACACTTTACTGCTTATGATT+TGG - chr5.2:52580981-52581000 MS.gene035916:intron 30.0%
ACCATAAAAATTAGAGTGCA+TGG + chr5.2:52583258-52583277 None:intergenic 30.0%
ACGAAACTAAAAGACAAATC+AGG + chr5.2:52581400-52581419 None:intergenic 30.0%
AGGAATAATTTGAGTAGCTT+AGG + chr5.2:52585317-52585336 None:intergenic 30.0%
CAAAATTGGAGGGATTATTT+GGG - chr5.2:52584241-52584260 MS.gene035916:intron 30.0%
CAAATCCGTTCTAATAATTC+AGG - chr5.2:52581904-52581923 MS.gene035916:CDS 30.0%
CATTCTCTTATAAATAGGAC+CGG - chr5.2:52581350-52581369 MS.gene035916:intron 30.0%
CTCTCAGAAAAATAAGTATG+AGG + chr5.2:52582951-52582970 None:intergenic 30.0%
CTTGGTTTAATGTCTATCAT+TGG - chr5.2:52582867-52582886 MS.gene035916:intron 30.0%
GAAAACAGTCTTTATGTTCA+TGG - chr5.2:52584853-52584872 MS.gene035916:CDS 30.0%
GTACTATGCAACTATGAAAT+GGG + chr5.2:52581964-52581983 None:intergenic 30.0%
TAATGGTGAATAGATTGTGT+AGG + chr5.2:52583659-52583678 None:intergenic 30.0%
TACTATGCAACTATGAAATG+GGG + chr5.2:52581963-52581982 None:intergenic 30.0%
TATTTAATCACTGGAATGCA+GGG - chr5.2:52585145-52585164 MS.gene035916:intron 30.0%
TGATTTAGTCGATTAGATCT+TGG + chr5.2:52582993-52583012 None:intergenic 30.0%
TGTACTATGCAACTATGAAA+TGG + chr5.2:52581965-52581984 None:intergenic 30.0%
TGTTTACTAAATGGTTGCAT+GGG + chr5.2:52584736-52584755 None:intergenic 30.0%
TTATTTAATCACTGGAATGC+AGG - chr5.2:52585144-52585163 MS.gene035916:intron 30.0%
TTCACCATTAGAATAAGACT+AGG - chr5.2:52583669-52583688 MS.gene035916:CDS 30.0%
TTCATCAACGACATAAAACA+AGG + chr5.2:52581480-52581499 None:intergenic 30.0%
TTCTCTTATAAATAAGACCG+GGG + chr5.2:52581259-52581278 None:intergenic 30.0%
TTGAAAAAGTTATCTGGGAA+TGG + chr5.2:52585078-52585097 None:intergenic 30.0%
TTGAACCAACTACATAGATT+TGG - chr5.2:52584791-52584810 MS.gene035916:CDS 30.0%
TTTCATAGTTGCATAGTACA+AGG - chr5.2:52581965-52581984 MS.gene035916:CDS 30.0%
TTTCCATTTCTACCTTTCTT+TGG + chr5.2:52585546-52585565 None:intergenic 30.0%
! AAATCTATGTAGTTGGTTCA+AGG + chr5.2:52584792-52584811 None:intergenic 30.0%
! AAGACTGTTTTCTTTGAATC+TGG + chr5.2:52584845-52584864 None:intergenic 30.0%
! AATGGAAAGGATTTTGTAAG+TGG + chr5.2:52580137-52580156 None:intergenic 30.0%
! AGTTACTAACCTTACTGATT+CGG + chr5.2:52580421-52580440 None:intergenic 30.0%
! ATGGAAAGGATTTTGTAAGT+GGG + chr5.2:52580136-52580155 None:intergenic 30.0%
! CTGAATTATTAGAACGGATT+TGG + chr5.2:52581906-52581925 None:intergenic 30.0%
! GAAGACTATTTTCTATACGA+CGG - chr5.2:52584917-52584936 MS.gene035916:CDS 30.0%
! GTTGTGTAATCAAACTTTTC+AGG - chr5.2:52583543-52583562 MS.gene035916:intron 30.0%
! TACAAACTTGTTTCAGAGTT+AGG - chr5.2:52585423-52585442 MS.gene035916:CDS 30.0%
! TATGATTTGGATCATTGGAA+GGG - chr5.2:52580994-52581013 MS.gene035916:intron 30.0%
! TCCATGCACTCTAATTTTTA+TGG - chr5.2:52583254-52583273 MS.gene035916:intron 30.0%
! TTATGATTTGGATCATTGGA+AGG - chr5.2:52580993-52581012 MS.gene035916:intron 30.0%
! TTATGTCGTTGATGAATACT+TGG - chr5.2:52581484-52581503 MS.gene035916:CDS 30.0%
!! ACTCTGAAACAAGTTTGTAA+CGG + chr5.2:52585422-52585441 None:intergenic 30.0%
!! CTCATACTTATTTTTCTGAG+AGG - chr5.2:52582949-52582968 MS.gene035916:intron 30.0%
!! TCTTTAGAGCATACTTGATT+TGG + chr5.2:52583741-52583760 None:intergenic 30.0%
!! TTCTAAGAAGCCGATTATTT+TGG - chr5.2:52584169-52584188 MS.gene035916:intron 30.0%
!!! AAAGTTTTTAGGTTGTACTC+AGG + chr5.2:52582894-52582913 None:intergenic 30.0%
!!! ACTTTTAAGTTGCATTGACA+TGG + chr5.2:52584990-52585009 None:intergenic 30.0%
!!! GTTGTTTTAGGAAACTACTT+TGG - chr5.2:52583891-52583910 MS.gene035916:intron 30.0%
!!! TGTTATTTTGGTTATGGGAT+TGG - chr5.2:52584058-52584077 MS.gene035916:intron 30.0%
AACAATGTCTTACATAGCTC+TGG - chr5.2:52581781-52581800 MS.gene035916:CDS 35.0%
AAGCCAAAGAAAGGTAGAAA+TGG - chr5.2:52585540-52585559 MS.gene035916:CDS 35.0%
AATTGCAAATACTGGAAGCA+TGG - chr5.2:52585488-52585507 MS.gene035916:CDS 35.0%
ACATTGGGAATTGCAAATAC+TGG - chr5.2:52585480-52585499 MS.gene035916:CDS 35.0%
ACTATGCAACTATGAAATGG+GGG + chr5.2:52581962-52581981 None:intergenic 35.0%
AGAGTCTGAAAATTCAGCTT+CGG - chr5.2:52584709-52584728 MS.gene035916:intron 35.0%
AGCATAGAAGAAAACTAACC+TGG + chr5.2:52584329-52584348 None:intergenic 35.0%
ATACTCCAAAAATTCACAGC+TGG - chr5.2:52582818-52582837 MS.gene035916:intron 35.0%
ATAGTTGCATAGTACAAGGA+CGG - chr5.2:52581969-52581988 MS.gene035916:CDS 35.0%
ATATATTTAGGGACCCAAGA+TGG - chr5.2:52580818-52580837 MS.gene035916:intron 35.0%
ATCCAGAACGATAATGTGTT+TGG + chr5.2:52583968-52583987 None:intergenic 35.0%
ATTGGATCAAAGTCAAGAGA+GGG - chr5.2:52584076-52584095 MS.gene035916:intron 35.0%
ATTTAATCACTGGAATGCAG+GGG - chr5.2:52585146-52585165 MS.gene035916:intron 35.0%
CACAACTAAATCTCAGTTAC+TGG - chr5.2:52584754-52584773 MS.gene035916:CDS 35.0%
CCAAAACTGCTAGACAAAAA+TGG - chr5.2:52582062-52582081 MS.gene035916:CDS 35.0%
CTAAGTTTCACCAACTAAGT+AGG + chr5.2:52582371-52582390 None:intergenic 35.0%
CTCACTATAAGACACAAATG+AGG + chr5.2:52583199-52583218 None:intergenic 35.0%
CTCATTTGTGTCTTATAGTG+AGG - chr5.2:52583197-52583216 MS.gene035916:CDS 35.0%
CTTCCTTTGATCCTAAACTT+TGG - chr5.2:52580393-52580412 MS.gene035916:CDS 35.0%
CTTCGAGTATACTCTTCTAA+TGG - chr5.2:52580648-52580667 MS.gene035916:intron 35.0%
GCATAGAAGAAAACTAACCT+GGG + chr5.2:52584328-52584347 None:intergenic 35.0%
GGTAAAGGGATAAGATTGAA+TGG - chr5.2:52580323-52580342 MS.gene035916:CDS 35.0%
GTAAATACCCTTGGAGTTAT+AGG - chr5.2:52583843-52583862 MS.gene035916:intron 35.0%
GTATACTCTTCTAATGGTCT+CGG - chr5.2:52580654-52580673 MS.gene035916:intron 35.0%
GTATAGAATGAGTGGTTGAT+TGG + chr5.2:52585380-52585399 None:intergenic 35.0%
GTGTTTACTAAATGGTTGCA+TGG + chr5.2:52584737-52584756 None:intergenic 35.0%
TAAATCTCAGTTACTGGATG+CGG - chr5.2:52584760-52584779 MS.gene035916:CDS 35.0%
TATACCGAGTTATCAATGGT+GGG - chr5.2:52580271-52580290 MS.gene035916:CDS 35.0%
TATACTCTTCTAATGGTCTC+GGG - chr5.2:52580655-52580674 MS.gene035916:intron 35.0%
TATATTTAGGGACCCAAGAT+GGG - chr5.2:52580819-52580838 MS.gene035916:intron 35.0%
TCCTTGGATGATTAATTCTG+CGG - chr5.2:52581074-52581093 MS.gene035916:intron 35.0%
TCTCTATGGTATATAGTCCT+TGG - chr5.2:52581058-52581077 MS.gene035916:intron 35.0%
TCTCTTATAAATAAGACCGG+GGG + chr5.2:52581258-52581277 None:intergenic 35.0%
TGAAGAAGGTGGTTATTTGT+TGG - chr5.2:52585692-52585711 MS.gene035916:CDS 35.0%
TTACTTGACAAAGCATGCAA+AGG - chr5.2:52583587-52583606 MS.gene035916:intron 35.0%
TTCAGCCAAATCTATGTAGT+TGG + chr5.2:52584799-52584818 None:intergenic 35.0%
TTGATCAACGGCATAAAACA+AGG + chr5.2:52581748-52581767 None:intergenic 35.0%
TTGGTACTAATCTACAAGGA+CGG + chr5.2:52583917-52583936 None:intergenic 35.0%
TTTGAAGGTGGGAAACTAAT+TGG - chr5.2:52580928-52580947 MS.gene035916:intron 35.0%
TTTGACAGAAATGAAGCTGT+AGG + chr5.2:52585337-52585356 None:intergenic 35.0%
! AAAGGATTTTGTAAGTGGGT+TGG + chr5.2:52580132-52580151 None:intergenic 35.0%
! AATTAGTTTCCCACCTTCAA+AGG + chr5.2:52580929-52580948 None:intergenic 35.0%
! AATTTGGAACTCCATTGACA+CGG + chr5.2:52582021-52582040 None:intergenic 35.0%
! ATAAGACTAGGCTTGTTTGA+TGG - chr5.2:52583681-52583700 MS.gene035916:CDS 35.0%
! CATTAGAAGAGTATACTCGA+AGG + chr5.2:52580650-52580669 None:intergenic 35.0%
! CTGCTTATGATTTGGATCAT+TGG - chr5.2:52580989-52581008 MS.gene035916:intron 35.0%
! GTACCAAAGTTTAGGATCAA+AGG + chr5.2:52580399-52580418 None:intergenic 35.0%
! TAAGACTAGGCTTGTTTGAT+GGG - chr5.2:52583682-52583701 MS.gene035916:CDS 35.0%
! TAAGTCCAGCTGTGAATTTT+TGG + chr5.2:52582826-52582845 None:intergenic 35.0%
! TCAGGTTACTTTGCAAGATT+TGG - chr5.2:52581922-52581941 MS.gene035916:CDS 35.0%
! TTTTAGCAACTTCAACTGCT+CGG + chr5.2:52584028-52584047 None:intergenic 35.0%
!! AAGTTCCAAGCATTGATCAA+CGG + chr5.2:52581760-52581779 None:intergenic 35.0%
!! ATGTCGATTTCTGTCACATT+GGG - chr5.2:52585465-52585484 MS.gene035916:CDS 35.0%
!! ATTTTGGTAATTTTGTGCGG+TGG - chr5.2:52584185-52584204 MS.gene035916:intron 35.0%
!! CAAGCCTAGTCTTATTCTAA+TGG + chr5.2:52583676-52583695 None:intergenic 35.0%
!! CCATTTTTGTCTAGCAGTTT+TGG + chr5.2:52582065-52582084 None:intergenic 35.0%
!! CTATTTAATTTGCTTGGCGT+GGG + chr5.2:52582797-52582816 None:intergenic 35.0%
!! GTAATCAAACTTTTCAGGGA+TGG - chr5.2:52583548-52583567 MS.gene035916:intron 35.0%
!! TATGCTGTTTCCTATGTAAG+AGG - chr5.2:52580889-52580908 MS.gene035916:intron 35.0%
!! TATTTAATTTGCTTGGCGTG+GGG + chr5.2:52582796-52582815 None:intergenic 35.0%
!! TGAGAAAAGTACCTTCCATT+GGG + chr5.2:52582745-52582764 None:intergenic 35.0%
!!! GTTTTCGAGTATAGAATGAG+TGG + chr5.2:52585388-52585407 None:intergenic 35.0%
AAAGTCTACGAATTCGGCTA+TGG - chr5.2:52585291-52585310 MS.gene035916:intron 40.0%
AACTGCATGCAATGTAGTTG+TGG - chr5.2:52584547-52584566 MS.gene035916:intron 40.0%
AATCCAGTGAAACAGTTGGT+AGG - chr5.2:52585564-52585583 MS.gene035916:CDS 40.0%
ACCGCAGAATTAATCATCCA+AGG + chr5.2:52581078-52581097 None:intergenic 40.0%
AGAGATGAAAGCAATGGTGA+TGG + chr5.2:52580024-52580043 None:intergenic 40.0%
AGCCAAACACATTATCGTTC+TGG - chr5.2:52583963-52583982 MS.gene035916:intron 40.0%
AGGTTATGCAAAAACACCAG+AGG - chr5.2:52582578-52582597 MS.gene035916:intron 40.0%
ATATCAATGGTCCCAATGGA+AGG - chr5.2:52582731-52582750 MS.gene035916:intron 40.0%
ATATTTAGGGACCCAAGATG+GGG - chr5.2:52580820-52580839 MS.gene035916:intron 40.0%
ATTAGGGCCTATAACTCCAA+GGG + chr5.2:52583853-52583872 None:intergenic 40.0%
ATTTGGCTGAACTGACTAGA+TGG - chr5.2:52584808-52584827 MS.gene035916:CDS 40.0%
CAATGTGACAGAAATCGACA+TGG + chr5.2:52585466-52585485 None:intergenic 40.0%
CTAAAAGACAAATCAGGCGA+CGG + chr5.2:52581394-52581413 None:intergenic 40.0%
CTCATTCTCATGTCTGTCAT+TGG + chr5.2:52585216-52585235 None:intergenic 40.0%
CTCTATATCAATGGTCCCAA+TGG - chr5.2:52582727-52582746 MS.gene035916:intron 40.0%
CTCTTATAAATAGGACCGGA+GGG - chr5.2:52581354-52581373 MS.gene035916:intron 40.0%
CTGCTCAATCTTTGATCAGA+TGG - chr5.2:52584511-52584530 MS.gene035916:intron 40.0%
CTGTTTGTGAAGCCAAAGAA+AGG - chr5.2:52585531-52585550 MS.gene035916:CDS 40.0%
CTTAGTAGAGCAAATGAGAG+TGG - chr5.2:52585657-52585676 MS.gene035916:CDS 40.0%
CTTCAAGGAGATTCCTTTGA+AGG - chr5.2:52580913-52580932 MS.gene035916:intron 40.0%
CTTCCAAGAGTAAATACCCT+TGG - chr5.2:52583834-52583853 MS.gene035916:intron 40.0%
GAGCAAAAGACATTGTGTCA+CGG - chr5.2:52580186-52580205 MS.gene035916:CDS 40.0%
GATTGGATCAAAGTCAAGAG+AGG - chr5.2:52584075-52584094 MS.gene035916:intron 40.0%
GCAGCAGTAAGAATAACTTG+AGG + chr5.2:52580374-52580393 None:intergenic 40.0%
GGGAGTGAGCACAAATAAAA+TGG + chr5.2:52581238-52581257 None:intergenic 40.0%
GGTCCAAAAGTCTACGAATT+CGG - chr5.2:52585285-52585304 MS.gene035916:intron 40.0%
GTAAGGTTGAGATTGCAGAA+TGG + chr5.2:52580155-52580174 None:intergenic 40.0%
GTATACCGAGTTATCAATGG+TGG - chr5.2:52580270-52580289 MS.gene035916:CDS 40.0%
GTCAGGTAACATCTGAAGAT+TGG - chr5.2:52584424-52584443 MS.gene035916:intron 40.0%
GTCGATTAGATCTTGGTATG+AGG + chr5.2:52582986-52583005 None:intergenic 40.0%
GTGCCATATTGTAGTTTGGT+TGG + chr5.2:52583711-52583730 None:intergenic 40.0%
GTTGAGATTGCAGAATGGAA+AGG + chr5.2:52580150-52580169 None:intergenic 40.0%
TATGTAGGTGATTGGAACTG+AGG - chr5.2:52580735-52580754 MS.gene035916:intron 40.0%
TCCTATGTAAGAGGACTTCA+AGG - chr5.2:52580898-52580917 MS.gene035916:intron 40.0%
TCCTTGAAGTCCTCTTACAT+AGG + chr5.2:52580902-52580921 None:intergenic 40.0%
TCGGTATACCGAGTTATCAA+TGG - chr5.2:52580267-52580286 MS.gene035916:CDS 40.0%
TCTCTTATAAATAGGACCGG+AGG - chr5.2:52581353-52581372 MS.gene035916:intron 40.0%
TGAATAGATTGTGTAGGGCA+CGG + chr5.2:52583653-52583672 None:intergenic 40.0%
TGGAAATCCAGTGAAACAGT+TGG - chr5.2:52585560-52585579 MS.gene035916:CDS 40.0%
TGTGTGTCAAAGACTGTACT+TGG - chr5.2:52582849-52582868 MS.gene035916:intron 40.0%
TTATGCCGTTGATCAATGCT+TGG - chr5.2:52581752-52581771 MS.gene035916:CDS 40.0%
TTGCTCTTTGAGTGATGGTA+AGG + chr5.2:52580172-52580191 None:intergenic 40.0%
TTTAATCACTGGAATGCAGG+GGG - chr5.2:52585147-52585166 MS.gene035916:intron 40.0%
TTTAGTTATGCCTTTGCCAG+TGG - chr5.2:52583173-52583192 MS.gene035916:CDS 40.0%
TTTGGATCATTGGAAGGGTT+TGG - chr5.2:52580999-52581018 MS.gene035916:intron 40.0%
! AAGGAGATTCCTTTGAAGGT+GGG - chr5.2:52580917-52580936 MS.gene035916:intron 40.0%
! AATCGGCTTCTTAGAAGCTT+TGG + chr5.2:52584165-52584184 None:intergenic 40.0%
! ACTTTGGTACCGAATCAGTA+AGG - chr5.2:52580409-52580428 MS.gene035916:CDS 40.0%
! AGATTGAATGGTAGTGTTGC+AGG - chr5.2:52580335-52580354 MS.gene035916:CDS 40.0%
! AGGGTATTTACTCTTGGAAG+CGG + chr5.2:52583834-52583853 None:intergenic 40.0%
! AGGTGGTTATTTGTTGGTTG+TGG - chr5.2:52585698-52585717 MS.gene035916:CDS 40.0%
! ATAAGTTCTTGCTGCTTACC+AGG + chr5.2:52584131-52584150 None:intergenic 40.0%
! ATCCAGTGAAACAGTTGGTA+GGG - chr5.2:52585565-52585584 MS.gene035916:CDS 40.0%
! CTTTTGGACCTGTGTAGAAA+CGG + chr5.2:52585275-52585294 None:intergenic 40.0%
! GGTGGTTATTTGTTGGTTGT+GGG - chr5.2:52585699-52585718 MS.gene035916:CDS 40.0%
! GGTTACTTTGCAAGATTTGG+CGG - chr5.2:52581925-52581944 MS.gene035916:CDS 40.0%
! GTCTTTTGCTCTTTGAGTGA+TGG + chr5.2:52580177-52580196 None:intergenic 40.0%
! GTGTTGCTAATGCTGGTAAA+GGG - chr5.2:52580309-52580328 MS.gene035916:CDS 40.0%
! TAGCCGAATTCGTAGACTTT+TGG + chr5.2:52585291-52585310 None:intergenic 40.0%
! TATCGTTCTGGATGTCTTGA+TGG - chr5.2:52583975-52583994 MS.gene035916:intron 40.0%
! TCATCCCACCATTGATAACT+CGG + chr5.2:52580278-52580297 None:intergenic 40.0%
! TCTATTGAAGGTGTGAGCAA+TGG - chr5.2:52582345-52582364 MS.gene035916:intron 40.0%
! TGGTTGATTGGTTGATGTGA+AGG + chr5.2:52585368-52585387 None:intergenic 40.0%
! TTATTTGTTGGTTGTGGGAG+AGG - chr5.2:52585704-52585723 MS.gene035916:CDS 40.0%
! TTTGGATCATGAGGTGGTTT+TGG - chr5.2:52581805-52581824 MS.gene035916:CDS 40.0%
!! ACTCCAAGGGTATTTACTCT+TGG + chr5.2:52583840-52583859 None:intergenic 40.0%
!! AGGTACATGAGTTGGTGAAT+CGG + chr5.2:52580090-52580109 None:intergenic 40.0%
!! ATTATTTGGGCTGGTTATCC+TGG - chr5.2:52584254-52584273 MS.gene035916:intron 40.0%
!! CATGTCGATTTCTGTCACAT+TGG - chr5.2:52585464-52585483 MS.gene035916:CDS 40.0%
!! CTGATTCGGTACCAAAGTTT+AGG + chr5.2:52580407-52580426 None:intergenic 40.0%
!! GCTATTTAATTTGCTTGGCG+TGG + chr5.2:52582798-52582817 None:intergenic 40.0%
!! GTGAGAAAAGTACCTTCCAT+TGG + chr5.2:52582746-52582765 None:intergenic 40.0%
!! TCTTTTGGGTACCATGTCAT+TGG + chr5.2:52585180-52585199 None:intergenic 40.0%
!!! GAGGTGGTTTTGGATACATT+TGG - chr5.2:52581815-52581834 MS.gene035916:CDS 40.0%
!!! GTCTTACATAGCTCTGGTTT+TGG - chr5.2:52581787-52581806 MS.gene035916:CDS 40.0%
AACCCTACCAACTGTTTCAC+TGG + chr5.2:52585570-52585589 None:intergenic 45.0%
AACTGACTAGATGGTAGCAG+AGG - chr5.2:52584817-52584836 MS.gene035916:CDS 45.0%
ACAATGCTGGACAAGCTCAA+GGG - chr5.2:52580770-52580789 MS.gene035916:intron 45.0%
ACTGACTAGATGGTAGCAGA+GGG - chr5.2:52584818-52584837 MS.gene035916:CDS 45.0%
AGAACCTACCGTTTCTACAC+AGG - chr5.2:52585264-52585283 MS.gene035916:intron 45.0%
ATAGTACAAGGACGGTCTAG+TGG - chr5.2:52581977-52581996 MS.gene035916:CDS 45.0%
ATGAGAGCTGATCCATCATC+AGG - chr5.2:52585231-52585250 MS.gene035916:intron 45.0%
ATTGGAGGGATTATTTGGGC+TGG - chr5.2:52584245-52584264 MS.gene035916:intron 45.0%
CATTAGGGCCTATAACTCCA+AGG + chr5.2:52583854-52583873 None:intergenic 45.0%
GCTTTGTCTAATACTCCCTC+CGG + chr5.2:52581372-52581391 None:intergenic 45.0%
GGGTATTTACTCTTGGAAGC+GGG + chr5.2:52583833-52583852 None:intergenic 45.0%
GTAGAAACGGTAGGTTCTAC+CGG + chr5.2:52585262-52585281 None:intergenic 45.0%
GTAGCTGATGTACTTCAAGC+TGG - chr5.2:52582606-52582625 MS.gene035916:intron 45.0%
TAAGACACAAATGAGGCCAC+TGG + chr5.2:52583192-52583211 None:intergenic 45.0%
TACAATGCTGGACAAGCTCA+AGG - chr5.2:52580769-52580788 MS.gene035916:intron 45.0%
TAGAAACGGTAGGTTCTACC+GGG + chr5.2:52585261-52585280 None:intergenic 45.0%
TGAGCAATGGCCTACTTAGT+TGG - chr5.2:52582358-52582377 MS.gene035916:intron 45.0%
TGTGCTTACAACCGTGTCAA+TGG - chr5.2:52582007-52582026 MS.gene035916:CDS 45.0%
TTAATCACTGGAATGCAGGG+GGG - chr5.2:52585148-52585167 MS.gene035916:intron 45.0%
TTGGCGTGGGGAATATATGT+GGG + chr5.2:52582784-52582803 None:intergenic 45.0%
TTTATTTGTGCTCACTCCCC+CGG - chr5.2:52581239-52581258 MS.gene035916:intron 45.0%
! AAATGAGAGTGGTGTCAAGG+TGG - chr5.2:52585668-52585687 MS.gene035916:CDS 45.0%
! AAGCTCAAGGGATGACGTTT+TGG - chr5.2:52580782-52580801 MS.gene035916:intron 45.0%
! AGCAAATGAGAGTGGTGTCA+AGG - chr5.2:52585665-52585684 MS.gene035916:CDS 45.0%
! AGCTCAAGGGATGACGTTTT+GGG - chr5.2:52580783-52580802 MS.gene035916:intron 45.0%
! AGGGATGATTTAGAGTTGCC+TGG - chr5.2:52584110-52584129 MS.gene035916:intron 45.0%
! CAAATACTGGAAGCATGGCT+GGG - chr5.2:52585493-52585512 MS.gene035916:CDS 45.0%
! CAAGGAGATTCCTTTGAAGG+TGG - chr5.2:52580916-52580935 MS.gene035916:intron 45.0%
! GAGTATGGAGGTACATGAGT+TGG + chr5.2:52580098-52580117 None:intergenic 45.0%
! GCAAGAGGAGTATACAATGC+TGG - chr5.2:52580757-52580776 MS.gene035916:intron 45.0%
! GTGTTTGGTGACTATAACCC+AGG - chr5.2:52584308-52584327 MS.gene035916:intron 45.0%
!! GCACGGTCGATTTGAGATAT+CGG + chr5.2:52583636-52583655 None:intergenic 45.0%
!! GGTGTTGCTAATGCTGGTAA+AGG - chr5.2:52580308-52580327 MS.gene035916:CDS 45.0%
!!! AGCTCTGGTTTTGGATCATG+AGG - chr5.2:52581796-52581815 MS.gene035916:CDS 45.0%
!!! GGATTTTGTAAGTGGGTTGG+TGG + chr5.2:52580129-52580148 None:intergenic 45.0%
!!! TCTGGTTTTGGATCATGAGG+TGG - chr5.2:52581799-52581818 MS.gene035916:CDS 45.0%
AAGAGAGGGAATCACGCGAT+AGG - chr5.2:52584090-52584109 MS.gene035916:intron 50.0%
ACAAATGAGGCCACTGGCAA+AGG + chr5.2:52583186-52583205 None:intergenic 50.0%
ACATCAGCTACAGCATCCTC+TGG + chr5.2:52582597-52582616 None:intergenic 50.0%
AGAGAGGGAATCACGCGATA+GGG - chr5.2:52584091-52584110 MS.gene035916:intron 50.0%
CAGCTTCAAGAGCAACGTCT+AGG + chr5.2:52583767-52583786 None:intergenic 50.0%
CATTGTGTCACGGCTCACAT+TGG - chr5.2:52580196-52580215 MS.gene035916:CDS 50.0%
CTTGGCGTGGGGAATATATG+TGG + chr5.2:52582785-52582804 None:intergenic 50.0%
CTTGTCCTCTTCCCCATCTT+GGG + chr5.2:52580834-52580853 None:intergenic 50.0%
GACAGCTGGAGAAGATCCTT+TGG - chr5.2:52580855-52580874 MS.gene035916:intron 50.0%
GATCCATCATCAGGCTATCC+CGG - chr5.2:52585240-52585259 MS.gene035916:intron 50.0%
GCTCTTGAAGCTGCAAGAAG+TGG - chr5.2:52583774-52583793 MS.gene035916:CDS 50.0%
GGCTTCACAAACAGCAACAC+AGG + chr5.2:52585525-52585544 None:intergenic 50.0%
GGTGTCAAGGTGGTTGAAGA+AGG - chr5.2:52585678-52585697 MS.gene035916:CDS 50.0%
GTCAAGGTGGTTGAAGAAGG+TGG - chr5.2:52585681-52585700 MS.gene035916:CDS 50.0%
GTGAATCGGCATGAACGAGT+TGG + chr5.2:52580076-52580095 None:intergenic 50.0%
GTGATTGGAACTGAGGCAAG+AGG - chr5.2:52580742-52580761 MS.gene035916:intron 50.0%
TAACTCGGTATACCGAGTCG+AGG + chr5.2:52580263-52580282 None:intergenic 50.0%
TCAGGGATGGATGTAGAGTG+TGG - chr5.2:52583561-52583580 MS.gene035916:intron 50.0%
TCTTGGAAGCGGGAGAATTG+AGG + chr5.2:52583823-52583842 None:intergenic 50.0%
TCTTGTCCTCTTCCCCATCT+TGG + chr5.2:52580835-52580854 None:intergenic 50.0%
TGGACCTGTGTAGAAACGGT+AGG + chr5.2:52585271-52585290 None:intergenic 50.0%
TGGCGTGGGGAATATATGTG+GGG + chr5.2:52582783-52582802 None:intergenic 50.0%
! AATCGGCATGAACGAGTTGG+TGG + chr5.2:52580073-52580092 None:intergenic 50.0%
! GCAAATACTGGAAGCATGGC+TGG - chr5.2:52585492-52585511 MS.gene035916:CDS 50.0%
! GGTAGGGTTTGAGAGTGTGA+CGG - chr5.2:52585581-52585600 MS.gene035916:CDS 50.0%
! TTTGAGAGTGTGACGGTGGA+AGG - chr5.2:52585588-52585607 MS.gene035916:CDS 50.0%
!! TTGCACGGTGTTGCTAATGC+TGG - chr5.2:52580302-52580321 MS.gene035916:CDS 50.0%
!! TTGGTGGTGTCACAGGAGTA+TGG + chr5.2:52580113-52580132 None:intergenic 50.0%
ACGGTGGAAGGAGGTGGAAA+GGG - chr5.2:52585600-52585619 MS.gene035916:CDS 55.0%
ATACCGAGTCGAGGAATGGC+AGG + chr5.2:52580254-52580273 None:intergenic 55.0%
CGGTATACCGAGTCGAGGAA+TGG + chr5.2:52580258-52580277 None:intergenic 55.0%
CTACCGGGATAGCCTGATGA+TGG + chr5.2:52585246-52585265 None:intergenic 55.0%
GCTGGTTATCCTGGCGAACT+TGG - chr5.2:52584263-52584282 MS.gene035916:intron 55.0%
GGAAGAGGACAAGAGACAGC+TGG - chr5.2:52580841-52580860 MS.gene035916:intron 55.0%
GGAGGTGGAAAGGGTGAAGT+TGG - chr5.2:52585609-52585628 MS.gene035916:CDS 55.0%
GGGGGAGACTACCAATGACA+TGG - chr5.2:52585166-52585185 MS.gene035916:intron 55.0%
GGTTATCCTGGCGAACTTGG+TGG - chr5.2:52584266-52584285 MS.gene035916:intron 55.0%
! AGGGTTTGAGAGTGTGACGG+TGG - chr5.2:52585584-52585603 MS.gene035916:CDS 55.0%
! ATCCTGGCGAACTTGGTGGA+AGG - chr5.2:52584270-52584289 MS.gene035916:intron 55.0%
! CAGTGTTACTGCACGCAGTC+AGG - chr5.2:52584407-52584426 MS.gene035916:intron 55.0%
! TCCTGGCGAACTTGGTGGAA+GGG - chr5.2:52584271-52584290 MS.gene035916:intron 55.0%
!! AAGTGGGTTGGTGGTGTCAC+AGG + chr5.2:52580120-52580139 None:intergenic 55.0%
!! CGAGTTGGTGGTAGCGAGTT+AGG + chr5.2:52580061-52580080 None:intergenic 55.0%
!! GTGGTGTCACAGGAGTATGG+AGG + chr5.2:52580110-52580129 None:intergenic 55.0%
!! TGGTGGGATGAAGCGTTGCA+CGG - chr5.2:52580287-52580306 MS.gene035916:CDS 55.0%
AGGGACCCAAGATGGGGAAG+AGG - chr5.2:52580826-52580845 MS.gene035916:intron 60.0%
AGTGTGACGGTGGAAGGAGG+TGG - chr5.2:52585594-52585613 MS.gene035916:CDS 60.0%
GACGGTGGAAGGAGGTGGAA+AGG - chr5.2:52585599-52585618 MS.gene035916:CDS 60.0%
GCTCCTGCCATTCCTCGACT+CGG - chr5.2:52580248-52580267 MS.gene035916:CDS 60.0%
TGGTGGAAGGGCTCTTGCTC+AGG - chr5.2:52584283-52584302 MS.gene035916:intron 60.0%
! GAGAGTGTGACGGTGGAAGG+AGG - chr5.2:52585591-52585610 MS.gene035916:CDS 60.0%
GCCCTTCCACCAAGTTCGCC+AGG + chr5.2:52584275-52584294 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 52580008 52585755 52580008 ID=MS.gene035916
chr5.2 mRNA 52580008 52585755 52580008 ID=MS.gene035916.t1;Parent=MS.gene035916
chr5.2 exon 52585333 52585755 52585333 ID=MS.gene035916.t1.exon1;Parent=MS.gene035916.t1
chr5.2 CDS 52585333 52585755 52585333 ID=cds.MS.gene035916.t1;Parent=MS.gene035916.t1
chr5.2 exon 52584719 52585021 52584719 ID=MS.gene035916.t1.exon2;Parent=MS.gene035916.t1
chr5.2 CDS 52584719 52585021 52584719 ID=cds.MS.gene035916.t1;Parent=MS.gene035916.t1
chr5.2 exon 52583668 52583837 52583668 ID=MS.gene035916.t1.exon3;Parent=MS.gene035916.t1
chr5.2 CDS 52583668 52583837 52583668 ID=cds.MS.gene035916.t1;Parent=MS.gene035916.t1
chr5.2 exon 52583136 52583233 52583136 ID=MS.gene035916.t1.exon4;Parent=MS.gene035916.t1
chr5.2 CDS 52583136 52583233 52583136 ID=cds.MS.gene035916.t1;Parent=MS.gene035916.t1
chr5.2 exon 52581434 52582198 52581434 ID=MS.gene035916.t1.exon5;Parent=MS.gene035916.t1
chr5.2 CDS 52581434 52582198 52581434 ID=cds.MS.gene035916.t1;Parent=MS.gene035916.t1
chr5.2 exon 52580008 52580597 52580008 ID=MS.gene035916.t1.exon6;Parent=MS.gene035916.t1
chr5.2 CDS 52580008 52580597 52580008 ID=cds.MS.gene035916.t1;Parent=MS.gene035916.t1
Gene Sequence

>MS.gene035916

ATGGGTCACTTTTCCATCACCATTGCTTTCATCTCTTTCATTTTTCTCTTCCTAACTCGCTACCACCAACTCGTTCATGCCGATTCACCAACTCATGTACCTCCATACTCCTGTGACACCACCAACCCACTTACAAAATCCTTTCCATTCTGCAATCTCAACCTTACCATCACTCAAAGAGCAAAAGACATTGTGTCACGGCTCACATTGGATGAGAAAATCTCTCAACTTGTTAACACAGCTCCTGCCATTCCTCGACTCGGTATACCGAGTTATCAATGGTGGGATGAAGCGTTGCACGGTGTTGCTAATGCTGGTAAAGGGATAAGATTGAATGGTAGTGTTGCAGGTGCTACTAGTTTTCCTCAAGTTATTCTTACTGCTGCTTCCTTTGATCCTAAACTTTGGTACCGAATCAGTAAGGTTAGTAACTCTTTTAATCCATGTTTGAAATTCATTTTAAGATATTTTTTGTATTTTTATCTTTATATACAAAAACATGAACTAGTTTAAAGATTTTAGTTTTTGGTTGATTAGTTTAAGATATATTAATTACTTGAATTCAGTTTTTATAATAAGAAAACATATTATATTAGTGTATTTTTATCATCACTTCAGATGATTTCGTCAAACTTGAGACCTTCGAGTATACTCTTCTAATGGTCTCGGGTTTGAATCATTTCTGTGTCAGATAAAAAACTATACTTTTTTTATCTTAATTAAATTGTATGTAGGTGATTGGAACTGAGGCAAGAGGAGTATACAATGCTGGACAAGCTCAAGGGATGACGTTTTGGGCACCAAACATAAATATATTTAGGGACCCAAGATGGGGAAGAGGACAAGAGACAGCTGGAGAAGATCCTTTGGTAAATTCAAAATATGCTGTTTCCTATGTAAGAGGACTTCAAGGAGATTCCTTTGAAGGTGGGAAACTAATTGGAGATCGTCTTAAAGCTTCTGCTTGTTGCAAACACTTTACTGCTTATGATTTGGATCATTGGAAGGGTTTGGACCGTTTTGATTTTGATGCAAAAGTAAGTTTTCTTTTCTCTATGGTATATAGTCCTTGGATGATTAATTCTGCGGTGAACAAGTGAGATAAATCTTGCATCATGCACAAACTAATTTTCACTATTAGATCAATAAATCTTATTGTTAAATTGAAAGATGTATAATGTGATTTATTAGTCAAATGTAGAAATGATATTTGAGGATGATACAAAACCATTTTATTTGTGCTCACTCCCCCGGTCTTATTTATAAGAGAAATTTTGGTCAACGAAATTTAATGTATTTGGTTTGAATTATGAACCAGATACATCAACTTTTGTTAACCAAACATTCTCTTATAAATAGGACCGGAGGGAGTATTAGACAAAGCCGTCGCCTGATTTGTCTTTTAGTTTCGTTTGTTGTGTTGTACAGCAGAGTCTGTTTTGTCTTTTTGTTATTTTTATTTTGAATTGCCTTGTTTTATGTCGTTGATGAATACTTGGAACTTGAATAATTTCTTGCATATTAGAGCTTCAATTATCTTTAGTCATGTTAGGTATTATTGCCAAAAGAATAGTTGATTTAATATTGAAATTAAAAAATGACAAATAGGTAATAGCAAAATTTTGAAAAAAAAATCGATACTTGAATAAAAACAGAGAAAGTGACCAAGTTCTTGTTTGTTTAGTTTGTTGAGTTGTGCATATCATGATTTGTCCTTTTGTTTCACATTTTGAATTGCCTTGTTTTATGCCGTTGATCAATGCTTGGAACTTGAACAATGTCTTACATAGCTCTGGTTTTGGATCATGAGGTGGTTTTGGATACATTTGGTCAACTTTTTATGCTAATGATTCTTATTATATTCTTCAGCTTTTAAATTTTTCCATTTAAATAATCCAAATCCGTTCTAATAATTCAGGTTACTTTGCAAGATTTGGCGGATACGTATCAACCCCCATTTCATAGTTGCATAGTACAAGGACGGTCTAGTGGAATAATGTGTGCTTACAACCGTGTCAATGGAGTTCCAAATTGTGCAGATTACAATTTGTTAACCAAAACTGCTAGACAAAAATGGAATTTCAATGGGTATAGATATTAGTTTGTGTTACATGTTTTTTTTACCCTTATAATTATTTCAATTTTGTTTTTTTAATTATTTTATTTACTTTTTAGCTCTTACAAATTACAAAATTGGAAACACAAAATATGTAGTTTTGTATTTTTTTTAGATATTTAAAAGCGAGTACAAAAATGTAAATTTTATACGAAGGAACCCCTTATAAGAATTAAACAATATATTTAACAATGTATCCTTTATGAAACAATGTTTTTCACTCTATTGAAGGTGTGAGCAATGGCCTACTTAGTTGGTGAAACTTAGTTTTCAATTCAAACTTTTCAGTTTTCTCTCCTCTTTTTGAAGCTACATATTTATAATGTATCATTCACCAAAATGTGAAAGTGAACTTTTACTTTTTTTTACTTGATTAATAAGAATGATTTTTTGGTGTTAAAATCAGGTATATTACGTCGGATTGTGAAGCAGTAAGAATCATATATGATAATCAAGGTTATGCAAAAACACCAGAGGATGCTGTAGCTGATGTACTTCAAGCTGGTATACTTTCACTCTTCCTTTGTTTATACATCTATTAACAATATATAAAGAAAATATGAGATTTTATTTTTTTGGCTAAGTGTAATTATCATTATCTAACTCTATATCAATGGTCCCAATGGAAGGTACTTTTCTCACATTTTCATTAGAGTCCCCACATATATTCCCCACGCCAAGCAAATTAAATAGCATACTCCAAAAATTCACAGCTGGACTTAAGTTGTGTGTCAAAGACTGTACTTGGTTTAATGTCTATCATTGGACCTGAGTACAACCTAAAAACTTTCTTTCAATTAGAGATTTATTTCATGCACCCTTTACCTCATACTTATTTTTCTGAGAGGTGTGCATTTTACCTCATACCAAGATCTAATCGACTAAATCACGAGAATTAAAAAAGTTGGTTTTAATATAAATTTGTTGACAATTGTTATTGTTTTATATGTTTTAATATAAATTTGTTGACAATTGTTATTGTTTTATCGTCATTTTAGTTGTTTAAGTTCTGGCTTAGTTGAAGTTGTGACTTCCTTATCATTTTGCATTTTAGTTATGCCTTTGCCAGTGGCCTCATTTGTGTCTTATAGTGAGGAAAATTTGCAAGTGTCCATGATAATTAAGATTGATCCATGCACTCTAATTTTTATGGTTAAATTACATGTCTTAATTTTACACAATGTGGACATATAAAATCTCTATTTTGTAACAGAACATGACTTTACTCTTTAGATTTAATGCATGTTTAGATTGATGATGAATAGTTATCTTTATTTTGCAACAGAACATGACTTTAGAAATAATGCATGTTTAGATTGTCGATGAACTTTAGAAAATCACATAGTATCACTGTAATTTTGTCAAACTCAACTCCAAACATACACAAGTACTATTTATTATAATCAAGGCGATTTACATGTTGTGTAATCAAACTTTTCAGGGATGGATGTAGAGTGTGGCGATTACTTGACAAAGCATGCAAAGGCAGCAGTATTGCAAAAAAAAGTACCGATATCTCAAATCGACCGTGCCCTACACAATCTATTCACCATTAGAATAAGACTAGGCTTGTTTGATGGGAATCCAACCAAACTACAATATGGCACAATTGGTCCAAATCAAGTATGCTCTAAAGAAAACCTAGACGTTGCTCTTGAAGCTGCAAGAAGTGGCATTGTACTTTTAAAAAACACTGCCTCAATTCTCCCGCTTCCAAGAGTAAATACCCTTGGAGTTATAGGCCCTAATGCCAATAAATCATCTAAGGTTGTTTTAGGAAACTACTTTGGCCGTCCTTGTAGATTAGTACCAATATTAAAAGGATTTTACACTTATGCTAGCCAAACACATTATCGTTCTGGATGTCTTGATGGAACAAAGTGTGCTTCAGCTGAAATCGACCGAGCAGTTGAAGTTGCTAAAATAAGTGATTATGTTATTTTGGTTATGGGATTGGATCAAAGTCAAGAGAGGGAATCACGCGATAGGGATGATTTAGAGTTGCCTGGTAAGCAGCAAGAACTTATTAATAGTGTTGCCAAAGCTTCTAAGAAGCCGATTATTTTGGTAATTTTGTGCGGTGGTCCTGTTGATATTACTTTTGCTAAGAATAATGACAAAATTGGAGGGATTATTTGGGCTGGTTATCCTGGCGAACTTGGTGGAAGGGCTCTTGCTCAGGTTGTGTTTGGTGACTATAACCCAGGTTAGTTTTCTTCTATGCTTTATCCATTGACAGATAAAAACACATAATATGGTAAAAAAATGGATTTAGATTGTTTGCAGTGTTACTGCACGCAGTCAGGTAACATCTGAAGATTGGACAGTTCAGATTTCAATGACTATTTGATTTTTTAAAATCTAAAATATCAAGTTTGAAATTTAAACTGCTCAATCTTTGATCAGATGGTTCAGATATTGCTAACTGCATGCAATGTAGTTGTGGCTGCGACGACCAAGATCCTTAAAACATGTATAAACTTCGTAGATTTGGAAAAGTCTTAATTATTGAATAAGATAATATTTAGTTAAGCAAAAAGGGAATTTTTTTAATTTTTTTTATTTTATATTGGGAGACAAGGGAAAGAGTCTGAAAATTCAGCTTCGGTCCCATGCAACCATTTAGTAAACACAACTAAATCTCAGTTACTGGATGCGGAATGAACCTTGAACCAACTACATAGATTTGGCTGAACTGACTAGATGGTAGCAGAGGGTCCAGATTCAAAGAAAACAGTCTTTATGTTCATGGTTTTTAGAAATAGTCTGCAATTGTGATTGTGACCATAAAATGAAGACTATTTTCTATACGACGGTTGTAGCAACGTCAAATATATTTAGCAAATGTTTTCTACAATATCATCCATGTCAATGCAACTTAAAAGTGTCCACAATTTAAAACATTGCTTATAGTGCTATTAGCTTTTTCTTGTTGACCAAAATTATTATATCCATTCCCAGATAACTTTTTCAAGTATATTTTCCTAAAACTATTATTACTCAACTAATGGGATGCTTTGTTATTTAATCACTGGAATGCAGGGGGGAGACTACCAATGACATGGTACCCAAAAGATTTCATCAAAATACCAATGACAGACATGAGAATGAGAGCTGATCCATCATCAGGCTATCCCGGTAGAACCTACCGTTTCTACACAGGTCCAAAAGTCTACGAATTCGGCTATGGCCTAAGCTACTCAAATTATTCCTACAGCTTCATTTCTGTCAAAAACAACAACCTTCACATCAACCAATCAACCACTCATTCTATACTCGAAAACTCTGAAACAATCCGTTACAAACTTGTTTCAGAGTTAGGCGAAGAAACATGTCAAACCATGTCGATTTCTGTCACATTGGGAATTGCAAATACTGGAAGCATGGCTGGGAAACATCCTGTGTTGCTGTTTGTGAAGCCAAAGAAAGGTAGAAATGGAAATCCAGTGAAACAGTTGGTAGGGTTTGAGAGTGTGACGGTGGAAGGAGGTGGAAAGGGTGAAGTTGGATTTGAAGTTAGTGTTTGTGAGCATCTTAGTAGAGCAAATGAGAGTGGTGTCAAGGTGGTTGAAGAAGGTGGTTATTTGTTGGTTGTGGGAGAGGAAGAGTACTCAATAAGTATCAATGTTTAA
Protein sequence

>MS.gene035916.t1

MGHFSITIAFISFIFLFLTRYHQLVHADSPTHVPPYSCDTTNPLTKSFPFCNLNLTITQRAKDIVSRLTLDEKISQLVNTAPAIPRLGIPSYQWWDEALHGVANAGKGIRLNGSVAGATSFPQVILTAASFDPKLWYRISKVIGTEARGVYNAGQAQGMTFWAPNINIFRDPRWGRGQETAGEDPLVNSKYAVSYVRGLQGDSFEGGKLIGDRLKASACCKHFTAYDLDHWKGLDRFDFDAKVTLQDLADTYQPPFHSCIVQGRSSGIMCAYNRVNGVPNCADYNLLTKTARQKWNFNGYITSDCEAVRIIYDNQGYAKTPEDAVADVLQAGMDVECGDYLTKHAKAAVLQKKVPISQIDRALHNLFTIRIRLGLFDGNPTKLQYGTIGPNQVCSKENLDVALEAARSGIVLLKNTASILPLPRVNTLGVIGPNANKSSKVVLGNYFGRPCRLVPILKGFYTYASQTHYRSGCLDGTKCASAEIDRAVEVAKISDYVILVMGLDQSQERESRDRDDLELPGKQQELINSVAKASKKPIILVILCGGPVDITFAKNNDKIGGIIWAGYPGELGGRALAQVVFGDYNPGGRLPMTWYPKDFIKIPMTDMRMRADPSSGYPGRTYRFYTGPKVYEFGYGLSYSNYSYSFISVKNNNLHINQSTTHSILENSETIRYKLVSELGEETCQTMSISVTLGIANTGSMAGKHPVLLFVKPKKGRNGNPVKQLVGFESVTVEGGGKGEVGFEVSVCEHLSRANESGVKVVEEGGYLLVVGEEEYSISINV