AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene20846

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene20846.t1 MTR_1g087240 96.340 765 28 0 1 765 1 765 0.0 1537
MS.gene20846.t1 MTR_7g109390 81.830 765 136 2 3 765 8 771 0.0 1316
MS.gene20846.t1 MTR_2g034720 68.668 766 223 7 5 764 7 761 0.0 1081
MS.gene20846.t1 MTR_2g008240 56.693 762 318 5 4 756 16 774 0.0 896
MS.gene20846.t1 MTR_4g094285 57.067 757 313 5 8 755 19 772 0.0 891
MS.gene20846.t1 MTR_1g106860 53.562 758 339 6 2 747 3 759 0.0 818
MS.gene20846.t1 MTR_5g030860 46.863 781 381 11 3 756 8 781 0.0 748
MS.gene20846.t1 MTR_3g074060 48.387 775 367 11 5 755 9 774 0.0 747
MS.gene20846.t1 MTR_5g062430 47.503 781 377 12 3 755 5 780 0.0 729
MS.gene20846.t1 MTR_5g062320 46.743 783 384 10 1 755 1 778 0.0 724
MS.gene20846.t1 MTR_5g062370 47.201 786 382 12 3 760 5 785 0.0 719
MS.gene20846.t1 MTR_5g062650 45.605 785 382 14 5 755 10 783 0.0 704
MS.gene20846.t1 MTR_5g062370 50.769 585 265 7 3 566 5 587 0.0 601
MS.gene20846.t1 MTR_3g462820 24.588 667 372 29 27 621 12 619 1.12e-33 137
MS.gene20846.t1 MTR_6g028120 25.567 661 354 25 33 618 5 602 5.49e-33 135
MS.gene20846.t1 MTR_6g028110 23.894 678 364 26 23 618 15 622 1.44e-31 131
MS.gene20846.t1 MTR_5g069800 26.527 573 322 26 81 618 93 601 1.50e-31 131
MS.gene20846.t1 MTR_6g028110 23.894 678 364 26 23 618 15 622 2.27e-31 131
MS.gene20846.t1 MTR_6g028090 24.143 671 367 25 25 618 16 621 2.23e-30 127
MS.gene20846.t1 MTR_6g028100 23.910 665 360 26 33 618 24 621 2.33e-30 127
MS.gene20846.t1 MTR_5g069740 24.299 642 357 27 43 618 11 589 6.55e-30 125
MS.gene20846.t1 MTR_7g086030 24.186 645 361 27 44 618 11 597 6.81e-28 120
MS.gene20846.t1 MTR_7g086030 24.186 645 361 27 44 618 36 622 1.14e-27 119
MS.gene20846.t1 MTR_3g079750 23.658 596 359 23 42 574 33 595 6.01e-25 110
MS.gene20846.t1 MTR_2g030000 23.500 600 353 21 43 574 36 597 8.95e-24 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene20846.t1 AT1G02640 73.760 766 194 4 3 765 7 768 0.0 1186
MS.gene20846.t1 AT5G49360 70.104 766 216 9 2 758 12 773 0.0 1085
MS.gene20846.t1 AT5G64570 58.824 765 298 7 5 756 23 783 0.0 912
MS.gene20846.t1 AT5G09730 56.873 742 307 6 23 755 34 771 0.0 869
MS.gene20846.t1 AT3G19620 55.135 740 319 5 18 747 22 758 0.0 859
MS.gene20846.t1 AT5G64570 59.459 629 242 5 137 756 1 625 0.0 771
MS.gene20846.t1 AT5G64570 63.986 572 197 5 5 569 23 592 0.0 742
MS.gene20846.t1 AT5G10560 45.477 796 386 10 3 756 2 791 0.0 730
MS.gene20846.t1 AT1G78060 47.043 744 369 10 22 748 23 758 0.0 729
MS.gene20846.t1 AT5G09700 54.071 479 211 5 279 751 45 520 1.17e-180 527
MS.gene20846.t1 AT3G47000 26.711 599 336 23 43 574 16 578 2.06e-36 146
MS.gene20846.t1 AT3G47050 25.890 618 339 24 33 576 6 578 1.46e-34 140
MS.gene20846.t1 AT3G47040 23.231 650 370 26 43 621 16 607 1.24e-32 134
MS.gene20846.t1 AT3G47010 24.463 605 346 25 43 576 17 581 4.88e-31 129
MS.gene20846.t1 AT3G47010 23.881 603 351 23 43 576 17 580 3.76e-30 127
MS.gene20846.t1 AT3G47000 28.205 429 235 17 43 417 16 425 1.19e-28 120
MS.gene20846.t1 AT3G47040 22.370 675 370 27 43 621 16 632 2.96e-28 121
MS.gene20846.t1 AT3G62710 25.581 559 322 24 102 618 143 649 3.05e-28 121
MS.gene20846.t1 AT5G04885 24.613 646 361 23 2 574 21 613 9.12e-28 120
MS.gene20846.t1 AT5G04885 24.883 643 363 22 2 574 4 596 9.75e-28 119
MS.gene20846.t1 AT5G04885 24.883 643 363 22 2 574 4 596 9.75e-28 119
MS.gene20846.t1 AT3G47040 25.581 430 245 17 43 417 16 425 1.46e-25 111
MS.gene20846.t1 AT5G20950 24.424 651 369 28 35 618 24 618 1.95e-25 112
MS.gene20846.t1 AT5G20950 24.424 651 369 28 35 618 24 618 1.95e-25 112
MS.gene20846.t1 AT5G20950 24.349 653 367 28 35 618 102 696 2.24e-25 112
MS.gene20846.t1 AT3G47010 25.951 447 256 18 43 434 17 443 9.98e-25 108
MS.gene20846.t1 AT3G47000 26.464 427 254 17 180 574 3 401 7.70e-22 99.8
MS.gene20846.t1 AT5G20940 23.270 636 375 22 43 617 38 621 2.75e-21 99.4
MS.gene20846.t1 AT3G47040 22.672 494 295 20 164 621 198 640 1.97e-20 96.7
MS.gene20846.t1 AT3G47010 24.088 411 256 15 190 576 24 402 5.99e-20 94.0
MS.gene20846.t1 AT3G47050 25.676 370 199 12 43 356 16 365 5.27e-19 90.5

Find 227 sgRNAs with CRISPR-Local

Find 332 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCTTATGATCTTGATAAT+TGG 0.176588 1.3:+61714218 MS.gene20846:CDS
TGCAATGATGATAAGCAATT+TGG 0.200628 1.3:+61715621 MS.gene20846:CDS
GTGTAACTAGCCTGCTTTAA+TGG 0.213949 1.3:-61714800 None:intergenic
CGTGGTCAATGGCGTCTTAA+TGG 0.237138 1.3:+61714599 MS.gene20846:CDS
ACACGTTCAATGTGCCATTT+AGG 0.256161 1.3:+61714474 MS.gene20846:CDS
TGTTCTTACAATCAGGTTAA+TGG 0.264019 1.3:+61714533 MS.gene20846:CDS
TTGAGTGTGGTTGATAAGTC+TGG 0.284224 1.3:+61716904 MS.gene20846:CDS
AACATCAATGTCAAGTCTAA+TGG 0.302466 1.3:-61716713 None:intergenic
TCCTTCACACACATCCTAAA+TGG 0.313797 1.3:-61714488 None:intergenic
CAAACATTCCTAACCTCATT+TGG 0.313898 1.3:-61715048 None:intergenic
CTCGAGAGGCCCAACCATTT+TGG 0.326495 1.3:+61715788 MS.gene20846:CDS
ACCGGAACTGAGACCACTTT+TGG 0.330162 1.3:-61716616 None:intergenic
TTTGCAAAAGTTATATCTAT+AGG 0.332303 1.3:-61715828 None:intergenic
GCATGCCACATTCGCACAAC+CGG 0.335024 1.3:-61715601 None:intergenic
AGATAATGTGTGAACAAAAT+TGG 0.338230 1.3:-61716587 None:intergenic
AACAGACAGTAGTCGGTTAA+AGG 0.343289 1.3:+61714171 MS.gene20846:CDS
GCATCGGCAGCAGCTTCTTC+TGG 0.347935 1.3:-61714778 None:intergenic
GAATGGCTGGGTTGACATAC+TGG 0.348172 1.3:+61714032 MS.gene20846:CDS
AGCTAGTGGCAGCTGGGAAT+TGG 0.353343 1.3:-61713815 None:intergenic
GATTGTTACAGGTTTGGATT+TGG 0.354260 1.3:+61714925 MS.gene20846:intron
AGGACTGGTTTACTTCTTCC+TGG 0.354806 1.3:+61715729 MS.gene20846:CDS
TCATTCACCCTTGTTGGTAT+AGG 0.360034 1.3:-61713642 None:intergenic
ACAAGTCCACTACAAGGAAT+AGG 0.363402 1.3:+61715552 MS.gene20846:CDS
TTAACCGAAACTGATGTAAA+TGG 0.366495 1.3:+61715001 MS.gene20846:CDS
AGCACCATTTACATCAGTTT+CGG 0.369750 1.3:-61715005 None:intergenic
AATTGTTCCCTTTAGAAGAT+TGG 0.370516 1.3:-61714576 None:intergenic
TGGCCACCAAACTTAGTTCC+TGG 0.373919 1.3:-61713795 None:intergenic
ATTGTTCCCTTTAGAAGATT+GGG 0.374956 1.3:-61714575 None:intergenic
GGCAGTGATGCCTTGCAAAA+TGG 0.376149 1.3:-61713621 None:intergenic
CATCGTACTGTGGCAGTCAT+TGG 0.380479 1.3:+61715220 MS.gene20846:CDS
GTAGTGTATCCATTTGGTTA+TGG 0.386753 1.3:+61716553 MS.gene20846:CDS
GTCTTGTGGGCTGGTTATCC+TGG 0.387757 1.3:+61715873 MS.gene20846:CDS
CAAGTCCACTACAAGGAATA+GGG 0.388588 1.3:+61715553 MS.gene20846:CDS
GCCATTGCGGATATATTGTT+TGG 0.389650 1.3:+61715912 MS.gene20846:CDS
ACCAGTCCTATCTACCATTT+CGG 0.395118 1.3:-61715715 None:intergenic
GTGGTCAATGGCGTCTTAAT+GGG 0.395325 1.3:+61714600 MS.gene20846:CDS
GCGTATTTACCTGCTAGAAT+TGG 0.397933 1.3:-61714121 None:intergenic
CTGTAGTCCTCTCACATAAC+TGG 0.401956 1.3:-61714146 None:intergenic
AGTGACAGTAGCATTAGAAT+TGG 0.406208 1.3:-61715245 None:intergenic
GCTTCCTTGTGGGAAGCAAT+TGG 0.410013 1.3:+61713873 MS.gene20846:CDS
TTCATTCAATGCTTCCTTGT+GGG 0.412773 1.3:+61713863 MS.gene20846:CDS
TGTGATGTGTTCTTACAATC+AGG 0.419127 1.3:+61714526 MS.gene20846:CDS
TGAGGGAAGCTAGTGGCAGC+TGG 0.425971 1.3:-61713822 None:intergenic
ACCAGACATTAAGACCAAAA+TGG 0.427459 1.3:-61715802 None:intergenic
GCAATGATGATAAGCAATTT+GGG 0.431372 1.3:+61715622 MS.gene20846:CDS
ATGTACAACGGAGGAATGGC+TGG 0.431552 1.3:+61714019 MS.gene20846:CDS
AAGAATGATCCTCGAATTGT+AGG 0.432895 1.3:+61715849 MS.gene20846:CDS
CCCACGATGGGGTCGTGGAC+AGG 0.434758 1.3:+61714081 MS.gene20846:CDS
GTGGGACCAGGAACTAAGTT+TGG 0.438000 1.3:+61713789 MS.gene20846:CDS
CTGCTGCGGTTCCAAGGGTT+GGG 0.439330 1.3:+61713718 MS.gene20846:CDS
GCAAAATGGTAAGTTCTTTG+TGG 0.441477 1.3:-61713607 None:intergenic
AGATGGTACTAACACTTTGT+TGG 0.445284 1.3:+61716753 MS.gene20846:CDS
ATGAGGTCATTCACCCTTGT+TGG 0.447171 1.3:-61713648 None:intergenic
CACCAGCAGGTAATGGTCAA+TGG 0.449857 1.3:+61716788 MS.gene20846:CDS
TATCAGATTGTGATTCTGTT+GGG 0.449866 1.3:+61714722 MS.gene20846:CDS
TGGTGGTCAGAGGCACTTCA+TGG 0.450444 1.3:+61713756 MS.gene20846:CDS
CAGTTATGTGAGAGGACTAC+AGG 0.452877 1.3:+61714147 MS.gene20846:CDS
GCTGCTGCGGTTCCAAGGGT+TGG 0.456048 1.3:+61713717 MS.gene20846:CDS
CCTTGTGGGTACCATGTCAT+AGG 0.459058 1.3:-61716436 None:intergenic
AAGGTTGACATTGCAAGAAA+AGG 0.459521 1.3:+61713674 MS.gene20846:CDS
AGCTCATCCACAGGGTACCC+TGG 0.460856 1.3:+61716502 MS.gene20846:CDS
ATCCGCAATGGCAGCACCAC+CGG 0.461366 1.3:-61715901 None:intergenic
AACAGTAGCATCCGCTTGAC+GGG 0.464308 1.3:-61715661 None:intergenic
CTCGAATTGTAGGCGTCTTG+TGG 0.466486 1.3:+61715859 MS.gene20846:CDS
TGCTGACCCCAATCTTCTAA+AGG 0.467676 1.3:+61714568 MS.gene20846:CDS
TATTTCCCTATTCCTTGTAG+TGG 0.467699 1.3:-61715558 None:intergenic
ATTGTAGGCGTCTTGTGGGC+TGG 0.469900 1.3:+61715864 MS.gene20846:CDS
ACAGGTTTGGATTTGGATTG+TGG 0.471236 1.3:+61714932 MS.gene20846:intron
ACCAAAAGTGGTCTCAGTTC+CGG 0.472082 1.3:+61716615 MS.gene20846:CDS
TCAGTCAATTGAGGCCGAAA+TGG 0.474480 1.3:+61715701 MS.gene20846:CDS
TTGAGGCCGAAATGGTAGAT+AGG 0.476400 1.3:+61715709 MS.gene20846:CDS
GTGACAGTAGCATTAGAATT+GGG 0.478045 1.3:-61715244 None:intergenic
AAACAGTAGCATCCGCTTGA+CGG 0.478524 1.3:-61715662 None:intergenic
ATTATCTAGTGCACCAAAAG+TGG 0.483566 1.3:+61716603 MS.gene20846:CDS
CAGCTTCAAGAGCCAAGTCT+TGG 0.484108 1.3:-61715135 None:intergenic
CACTCCAACTCACCAAGACT+TGG 0.485796 1.3:+61715123 MS.gene20846:CDS
ACCAGCAGGTAATGGTCAAT+GGG 0.486567 1.3:+61716789 MS.gene20846:CDS
CCACGGCGGTGGCCGTCTAC+CGG 0.487310 1.3:-61716634 None:intergenic
CTTACAGTCCAAATGAGGTT+AGG 0.488722 1.3:+61715040 MS.gene20846:CDS
AGAGCCAAGTCTTGGTGAGT+TGG 0.488819 1.3:-61715127 None:intergenic
ACAATGCTGCTGCGGTTCCA+AGG 0.489142 1.3:+61713712 MS.gene20846:CDS
CTTCTAAAGGGAACAATTCG+TGG 0.489838 1.3:+61714581 MS.gene20846:CDS
TTGAGCTGTTTCCACGGCGG+TGG 0.489932 1.3:-61716645 None:intergenic
GGCCCTGTAGTGTATCCATT+TGG 0.491504 1.3:+61716547 MS.gene20846:CDS
GGACTGGTTTACTTCTTCCT+GGG 0.495062 1.3:+61715730 MS.gene20846:CDS
TAAGATAATCCATAACCAAA+TGG 0.495998 1.3:-61716562 None:intergenic
CTTCATTCAATGCTTCCTTG+TGG 0.497472 1.3:+61713862 MS.gene20846:CDS
ACTCGTTGCTGAGCCTTAGC+AGG 0.500218 1.3:-61716853 None:intergenic
GCTGCCGATGCCATTAAAGC+AGG 0.502258 1.3:+61714790 MS.gene20846:CDS
CACAAGACGCCTACAATTCG+AGG 0.502278 1.3:-61715858 None:intergenic
CTGGTGTTGATGTATAATGT+TGG 0.502939 1.3:-61714759 None:intergenic
AGGGAACAATTCGTGGTCAA+TGG 0.503217 1.3:+61714588 MS.gene20846:CDS
CGAGCCCGGTTGTGCGAATG+TGG 0.504050 1.3:+61715596 MS.gene20846:CDS
TCGAATTGTAGGCGTCTTGT+GGG 0.504658 1.3:+61715860 MS.gene20846:CDS
TAACCAAATGGATACACTAC+AGG 0.507124 1.3:-61716550 None:intergenic
ACTATGATCGGCAACTATGC+TGG 0.508582 1.3:+61715265 MS.gene20846:CDS
GTACATCGCCCTTGCTTCGT+CGG 0.510150 1.3:-61714002 None:intergenic
GTATCAGATTGTGATTCTGT+TGG 0.511438 1.3:+61714721 MS.gene20846:CDS
TTGCCGTATGGTTGAGCAGA+TGG 0.512897 1.3:-61715079 None:intergenic
GGGTACCCTGTGGATGAGCT+TGG 0.513477 1.3:-61716499 None:intergenic
TGCTAGAATTGGATCCTCAC+CGG 0.513683 1.3:-61714110 None:intergenic
ACAAGGTCTTGTTGATGCCC+AGG 0.514789 1.3:-61715747 None:intergenic
AGGTTGCTTCCGACGAAGCA+AGG 0.515976 1.3:+61713993 MS.gene20846:intron
CTTTGTTTGAGCTGTTTCCA+CGG 0.516257 1.3:-61716651 None:intergenic
GCTGACCCCAATCTTCTAAA+GGG 0.516568 1.3:+61714569 MS.gene20846:CDS
GTTCCAAGGGTTGGGATCAA+AGG 0.517619 1.3:+61713726 MS.gene20846:CDS
GACATTAAGACCAAAATGGT+TGG 0.518340 1.3:-61715798 None:intergenic
ACATTAAGACCAAAATGGTT+GGG 0.522088 1.3:-61715797 None:intergenic
TGAGTGTGGTTGATAAGTCT+GGG 0.522755 1.3:+61716905 MS.gene20846:CDS
GCTGGTTATCCTGGTCAAGC+CGG 0.527403 1.3:+61715882 MS.gene20846:CDS
TTTCTCCTTCTCTTATTGAG+TGG 0.531540 1.3:+61713543 MS.gene20846:CDS
TAACCTTTGATCCCAACCCT+TGG 0.532115 1.3:-61713729 None:intergenic
CAACGGTGGTGATGACTTGA+GGG 0.533858 1.3:-61713839 None:intergenic
AATGCTACTGTCACTATGAT+CGG 0.536100 1.3:+61715253 MS.gene20846:CDS
TCAGTACCACCAGCAGGTAA+TGG 0.536648 1.3:+61716781 MS.gene20846:CDS
TCATTACAAACCTGGGTTAG+CGG 0.538786 1.3:-61715937 None:intergenic
ACAAGGGTGAATGACCTCAT+TGG 0.540784 1.3:+61713651 MS.gene20846:CDS
TGTTGATGTATAATGTTGGT+TGG 0.540874 1.3:-61714755 None:intergenic
TCGCTTTCACTTTAATGCAA+AGG 0.541204 1.3:+61714252 MS.gene20846:CDS
TCAACAAGACCTTGTTTCAA+AGG 0.542357 1.3:+61715755 MS.gene20846:CDS
ATGAGGTTAGGAATGTTTGA+TGG 0.546650 1.3:+61715052 MS.gene20846:CDS
CCTTGTGGGAAGCAATTGGA+CGG 0.549327 1.3:+61713877 MS.gene20846:CDS
GCTCATCCACAGGGTACCCT+GGG 0.549425 1.3:+61716503 MS.gene20846:CDS
CCTTCTCTTATTGAGTGGTG+AGG 0.551148 1.3:+61713548 MS.gene20846:CDS
AGACCTTGTTTCAAAGGTAG+CGG 0.551793 1.3:+61715761 MS.gene20846:CDS
GCTCAACCATACGGCAACCT+TGG 0.551862 1.3:+61715085 MS.gene20846:CDS
GCTCTTGAAGCTGCAAGACA+AGG 0.552551 1.3:+61715145 MS.gene20846:CDS
CCTGTCCACGACCCCATCGT+GGG 0.553753 1.3:-61714081 None:intergenic
GAAAGTCTATGTTCCTGCTA+AGG 0.555151 1.3:+61716840 MS.gene20846:CDS
CATGCCACATTCGCACAACC+GGG 0.556110 1.3:-61715600 None:intergenic
AGGGACCCACGATGGGGTCG+TGG 0.557616 1.3:+61714076 MS.gene20846:CDS
TGGGTATGTTGTGCAAGGAA+AGG 0.559911 1.3:-61714956 None:intergenic
GCAGCACCACCGGCTTGACC+AGG 0.560968 1.3:-61715891 None:intergenic
GGCGATGTACAACGGAGGAA+TGG 0.561330 1.3:+61714015 MS.gene20846:CDS
CTAGCCTGCTTTAATGGCAT+CGG 0.564008 1.3:-61714794 None:intergenic
AGCCGGTGGTGCTGCCATTG+CGG 0.565149 1.3:+61715899 MS.gene20846:CDS
CTACATGCAGGTTAGCAAGC+AGG 0.567726 1.3:+61714442 MS.gene20846:intron
ATGAGACCAAGCTCATCCAC+AGG 0.567760 1.3:+61716493 MS.gene20846:CDS
AAGGTAGCGGCTGCCTCGAG+AGG 0.568465 1.3:+61715774 MS.gene20846:CDS
GAGGGAAGCTAGTGGCAGCT+GGG 0.568859 1.3:-61713821 None:intergenic
ATCAGATTGTGATTCTGTTG+GGG 0.569005 1.3:+61714723 MS.gene20846:CDS
GTGGTCTCAGTTCCGGTAGA+CGG 0.571301 1.3:+61716622 MS.gene20846:CDS
CAATGCTGCTGCGGTTCCAA+GGG 0.573627 1.3:+61713713 MS.gene20846:CDS
GGTTGCTTCCGACGAAGCAA+GGG 0.573928 1.3:+61713994 MS.gene20846:intron
GCCCATTGACCATTACCTGC+TGG 0.576424 1.3:-61716790 None:intergenic
CTCTTGAAGCTGCAAGACAA+GGG 0.577031 1.3:+61715146 MS.gene20846:CDS
CTTGTGGGAAGCAATTGGAC+GGG 0.577173 1.3:+61713878 MS.gene20846:CDS
ATTGTGCTTCTTAAGAACAC+TGG 0.577447 1.3:+61715169 MS.gene20846:CDS
GCTAGAATTGGATCCTCACC+GGG 0.579336 1.3:-61714109 None:intergenic
GAGCCATCTGCTCAACCATA+CGG 0.579442 1.3:+61715076 MS.gene20846:CDS
GCAGGTTAGCAAGCAGGACA+TGG 0.581137 1.3:+61714448 MS.gene20846:intron
GATTGGGGTCAGCACAAGTA+GGG 0.582749 1.3:-61714559 None:intergenic
GCAAGGACTATTCACGAGCC+CGG 0.584280 1.3:+61715582 MS.gene20846:CDS
TCACTTCAAGAACAAACACT+AGG 0.584597 1.3:+61716988 MS.gene20846:CDS
AGATTGGGGTCAGCACAAGT+AGG 0.584959 1.3:-61714560 None:intergenic
CTTCATGGAGTTTCAAATGT+GGG 0.585312 1.3:+61713771 MS.gene20846:CDS
TGGTTGATAAGTCTGGGACT+AGG 0.585602 1.3:+61716911 MS.gene20846:CDS
GGTGAGGATCCAATTCTAGC+AGG 0.588795 1.3:+61714112 MS.gene20846:CDS
GGGACTAGGAGAATTCCAAT+GGG 0.591595 1.3:+61716925 MS.gene20846:CDS
GCCGAAATGGTAGATAGGAC+TGG 0.592618 1.3:+61715714 MS.gene20846:CDS
TCCTGTCCACGACCCCATCG+TGG 0.592950 1.3:-61714082 None:intergenic
TTGTTCCCTTTAGAAGATTG+GGG 0.593071 1.3:-61714574 None:intergenic
GGTCGTGGACAGGAGACTCC+CGG 0.595003 1.3:+61714091 MS.gene20846:CDS
GGTTATCCTGGTCAAGCCGG+TGG 0.595636 1.3:+61715885 MS.gene20846:CDS
GTTGGACCAAGGTTGCCGTA+TGG 0.596559 1.3:-61715091 None:intergenic
CCGGTAGACGGCCACCGCCG+TGG 0.596564 1.3:+61716634 MS.gene20846:CDS
TTTAGGATGTGTGTGAAGGA+AGG 0.597067 1.3:+61714491 MS.gene20846:CDS
TGGGACTAGGAGAATTCCAA+TGG 0.597147 1.3:+61716924 MS.gene20846:CDS
GGAGAAATACAATGGTGATG+AGG 0.597505 1.3:-61713527 None:intergenic
GGGATTGGATCAGTCAATTG+AGG 0.599415 1.3:+61715692 MS.gene20846:CDS
TATGATCTTGATAATTGGAA+TGG 0.601843 1.3:+61714223 MS.gene20846:CDS
GTGTTCTCAGTACCACCAGC+AGG 0.602373 1.3:+61716775 MS.gene20846:CDS
GGAGTTTCAAATGTGGGACC+AGG 0.604839 1.3:+61713777 MS.gene20846:CDS
TCCAAACAATATATCCGCAA+TGG 0.605705 1.3:-61715913 None:intergenic
TTGTTTGGAACCGCTAACCC+AGG 0.606167 1.3:+61715927 MS.gene20846:CDS
CAGCCGCTACCTTTGAAACA+AGG 0.607790 1.3:-61715764 None:intergenic
CCGTCCAATTGCTTCCCACA+AGG 0.609866 1.3:-61713877 None:intergenic
ACACACTTACAGTCCAAATG+AGG 0.611542 1.3:+61715035 MS.gene20846:CDS
GGACCAGGAACTAAGTTTGG+TGG 0.612020 1.3:+61713792 MS.gene20846:CDS
AAGGAATAGGGAAATATGCA+AGG 0.614564 1.3:+61715565 MS.gene20846:CDS
CAAAATGGTTGGGCCTCTCG+AGG 0.619255 1.3:-61715787 None:intergenic
GCAACGGTGGTGATGACTTG+AGG 0.619522 1.3:-61713840 None:intergenic
AGGTTATGAGTGGTGGTCAG+AGG 0.619591 1.3:+61713746 MS.gene20846:CDS
GGATCAAAGGTTATGAGTGG+TGG 0.620241 1.3:+61713739 MS.gene20846:CDS
TACAGGGAACAGACAGTAGT+CGG 0.622154 1.3:+61714164 MS.gene20846:CDS
CATCACTGCCTATACCAACA+AGG 0.622164 1.3:+61713634 MS.gene20846:CDS
TCTAAATGCAGCCCGTCAAG+CGG 0.622520 1.3:+61715650 MS.gene20846:CDS
GGATACACAAGTCCACTACA+AGG 0.624565 1.3:+61715546 MS.gene20846:CDS
CCTCACCACTCAATAAGAGA+AGG 0.624741 1.3:-61713548 None:intergenic
TGATGATAAGCAATTTGGGT+CGG 0.626009 1.3:+61715626 MS.gene20846:CDS
GTGTGTGAAGGAAGGTAATG+TGG 0.627264 1.3:+61714499 MS.gene20846:CDS
GGAAGCATTGAATGAAGCAA+CGG 0.628505 1.3:-61713856 None:intergenic
CTAAGGCTCAGCAACGAGTG+AGG 0.630458 1.3:+61716857 MS.gene20846:CDS
GGGTGAATGACCTCATTGGA+AGG 0.631580 1.3:+61713655 MS.gene20846:CDS
GTTGGAGTGCACACATCAGT+TGG 0.632858 1.3:-61715109 None:intergenic
GAAGCAAGGGCGATGTACAA+CGG 0.635473 1.3:+61714007 MS.gene20846:CDS
TAAGAGAAGGAGAAATACAA+TGG 0.637514 1.3:-61713535 None:intergenic
ACTTCATGGAGTTTCAAATG+TGG 0.641554 1.3:+61713770 MS.gene20846:CDS
AGTTATGTGAGAGGACTACA+GGG 0.641980 1.3:+61714148 MS.gene20846:CDS
TGTACAACGGAGGAATGGCT+GGG 0.643008 1.3:+61714020 MS.gene20846:CDS
ATCACTGCCTATACCAACAA+GGG 0.645073 1.3:+61713635 MS.gene20846:CDS
CACTTCAAGAACAAACACTA+GGG 0.646984 1.3:+61716989 MS.gene20846:CDS
GCCATTTAGGATGTGTGTGA+AGG 0.646990 1.3:+61714487 MS.gene20846:CDS
TTGGGATCAAAGGTTATGAG+TGG 0.652242 1.3:+61713736 MS.gene20846:CDS
CATTGACCATTACCTGCTGG+TGG 0.655851 1.3:-61716787 None:intergenic
TACGCTGCCAGTTATGTGAG+AGG 0.656249 1.3:+61714139 MS.gene20846:CDS
TGTTCTCCCAGGGTACCCTG+TGG 0.657846 1.3:-61716509 None:intergenic
AGACAGTAGTCGGTTAAAGG+TGG 0.660144 1.3:+61714174 MS.gene20846:CDS
TGCACACATCAGTTGGACCA+AGG 0.660395 1.3:-61715102 None:intergenic
TCTTGATAATTGGAATGGTG+TGG 0.662682 1.3:+61714228 MS.gene20846:CDS
CCTATGACATGGTACCCACA+AGG 0.663844 1.3:+61716436 MS.gene20846:CDS
GGCACCACAAAAGCAACTAG+TGG 0.674093 1.3:+61716810 MS.gene20846:CDS
AGCATTGAATGAAGCAACGG+TGG 0.676069 1.3:-61713853 None:intergenic
GAGCTAAGTTACCTATGACA+TGG 0.679205 1.3:+61716425 MS.gene20846:CDS
GGGGTACATAGTATTCACAT+TGG 0.680410 1.3:+61716946 MS.gene20846:CDS
AAATGGTAAGTTCTTTGTGG+AGG 0.680816 1.3:-61713604 None:intergenic
AACCAAATGGATACACTACA+GGG 0.684560 1.3:-61716549 None:intergenic
GCAATGTCAACCTTCCAATG+AGG 0.684875 1.3:-61713665 None:intergenic
AGAGTGACACATGCACGATG+TGG 0.689806 1.3:+61716682 MS.gene20846:CDS
TGGACAGGAGACTCCCGGTG+AGG 0.696359 1.3:+61714096 MS.gene20846:CDS
GTTAGTGAACAATGCTGCTG+CGG 0.699085 1.3:+61713704 MS.gene20846:CDS
TGAGACCAAGCTCATCCACA+GGG 0.704245 1.3:+61716494 MS.gene20846:CDS
GACTAGGAGAATTCCAATGG+GGG 0.732630 1.3:+61716927 MS.gene20846:CDS
GCAAGGGCGATGTACAACGG+AGG 0.742537 1.3:+61714010 MS.gene20846:CDS
GATGACTTGAGGGAAGCTAG+TGG 0.745072 1.3:-61713829 None:intergenic
TGTTTGAGCTGTTTCCACGG+CGG 0.753182 1.3:-61716648 None:intergenic
GGACTAGGAGAATTCCAATG+GGG 0.764226 1.3:+61716926 MS.gene20846:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATATCAACCATTAATT+AGG - chr1.3:61714902-61714921 None:intergenic 15.0%
!!! AAATCTTACTATATTTTCTT+TGG + chr1.3:61714681-61714700 MS.gene20846:intron 15.0%
!!! AATGAATCTATCTTTTTTAA+GGG + chr1.3:61715955-61715974 MS.gene20846:intron 15.0%
!!! CATTTATAATGTAGTTTTTT+AGG - chr1.3:61716167-61716186 None:intergenic 15.0%
!!! TAATGAATCTATCTTTTTTA+AGG + chr1.3:61715954-61715973 MS.gene20846:intron 15.0%
!!! TAGTTTTTAAGAAATTGTTT+GGG + chr1.3:61716083-61716102 MS.gene20846:intron 15.0%
!!! TTACTAGTTTTCTTTTTAAA+TGG + chr1.3:61716348-61716367 MS.gene20846:intron 15.0%
!!! TTTTTTCGTTTTTGTTTTTT+AGG + chr1.3:61715513-61715532 MS.gene20846:intron 15.0%
!! GATTAAAATAGAAGAAATGT+GGG + chr1.3:61714372-61714391 MS.gene20846:intron 20.0%
!! TTTGCAAAAGTTATATCTAT+AGG - chr1.3:61715831-61715850 None:intergenic 20.0%
!!! AAGAGTTTTATATAAAAGGA+GGG + chr1.3:61716301-61716320 MS.gene20846:intron 20.0%
!!! AGTTTTTAAGAAATTGTTTG+GGG + chr1.3:61716084-61716103 MS.gene20846:intron 20.0%
!!! ATATATTTGATGATTGTTAC+AGG + chr1.3:61714914-61714933 MS.gene20846:intron 20.0%
!!! GTAGTTTTTAAGAAATTGTT+TGG + chr1.3:61716082-61716101 MS.gene20846:intron 20.0%
!!! TATTTTCTTTGGTGTAATTT+AGG + chr1.3:61714692-61714711 MS.gene20846:intron 20.0%
!!! TTGCAAGAGTTTTATATAAA+AGG + chr1.3:61716297-61716316 MS.gene20846:intron 20.0%
! AAAACTAGGAACCTAATTAA+TGG + chr1.3:61714888-61714907 MS.gene20846:intron 25.0%
! AGATAATGTGTGAACAAAAT+TGG - chr1.3:61716590-61716609 None:intergenic 25.0%
! AGTGTATACCATAAACATAA+AGG - chr1.3:61714281-61714300 None:intergenic 25.0%
! GACATTGATGTTAAAAACAT+TGG + chr1.3:61716724-61716743 MS.gene20846:CDS 25.0%
! GGATTAAAATAGAAGAAATG+TGG + chr1.3:61714371-61714390 MS.gene20846:intron 25.0%
! GTGTATACCATAAACATAAA+GGG - chr1.3:61714280-61714299 None:intergenic 25.0%
! TAAGATAATCCATAACCAAA+TGG - chr1.3:61716565-61716584 None:intergenic 25.0%
! TTAGAAAAGAAACACAAGAA+TGG - chr1.3:61714398-61714417 None:intergenic 25.0%
!! CACTTTTGTACTATGTAATA+TGG + chr1.3:61714317-61714336 MS.gene20846:intron 25.0%
!! TATGATCTTGATAATTGGAA+TGG + chr1.3:61714223-61714242 MS.gene20846:CDS 25.0%
!! TCCAAATGTGAACATTTTTA+GGG + chr1.3:61714057-61714076 MS.gene20846:CDS 25.0%
!!! AAAAACATTGGTTCAAAAGA+TGG + chr1.3:61716736-61716755 MS.gene20846:CDS 25.0%
!!! AGAACATATCGTTTTTACAA+CGG + chr1.3:61716526-61716545 MS.gene20846:CDS 25.0%
!!! CAAGAGTTTTATATAAAAGG+AGG + chr1.3:61716300-61716319 MS.gene20846:intron 25.0%
!!! CATTTCTTCTATTTTAATCC+AGG - chr1.3:61714371-61714390 None:intergenic 25.0%
!!! GAGCAATTTTTAAGAATCAT+AGG - chr1.3:61715993-61716012 None:intergenic 25.0%
!!! TAATGTTTTTTTCTTGTGTC+CGG - chr1.3:61716034-61716053 None:intergenic 25.0%
AACATCAATGTCAAGTCTAA+TGG - chr1.3:61716716-61716735 None:intergenic 30.0%
ACAAGGATACCTTAAAAACT+TGG + chr1.3:61716453-61716472 MS.gene20846:CDS 30.0%
ACATTAAGACCAAAATGGTT+GGG - chr1.3:61715800-61715819 None:intergenic 30.0%
AGATAGATTCATTACAAACC+TGG - chr1.3:61715948-61715967 None:intergenic 30.0%
CATCGTGTGTTCATATTTAT+TGG - chr1.3:61714846-61714865 None:intergenic 30.0%
GATAGATTCATTACAAACCT+GGG - chr1.3:61715947-61715966 None:intergenic 30.0%
GCAATGATGATAAGCAATTT+GGG + chr1.3:61715622-61715641 MS.gene20846:CDS 30.0%
TAAGAGAAGGAGAAATACAA+TGG - chr1.3:61713538-61713557 None:intergenic 30.0%
TATCAGATTGTGATTCTGTT+GGG + chr1.3:61714722-61714741 MS.gene20846:CDS 30.0%
TCCCTAAAAATGTTCACATT+TGG - chr1.3:61714061-61714080 None:intergenic 30.0%
TGCAATGATGATAAGCAATT+TGG + chr1.3:61715621-61715640 MS.gene20846:CDS 30.0%
TGGTATACACTTCTAGATAT+AGG + chr1.3:61714290-61714309 MS.gene20846:intron 30.0%
TGTTCTTACAATCAGGTTAA+TGG + chr1.3:61714533-61714552 MS.gene20846:CDS 30.0%
TGTTGATGTATAATGTTGGT+TGG - chr1.3:61714758-61714777 None:intergenic 30.0%
TTAACCGAAACTGATGTAAA+TGG + chr1.3:61715001-61715020 MS.gene20846:CDS 30.0%
TTCTTCGGCATAAAAAAACT+AGG + chr1.3:61714874-61714893 MS.gene20846:intron 30.0%
! AAAGAACTTACCATTTTGCA+AGG + chr1.3:61713611-61713630 MS.gene20846:CDS 30.0%
! AATTGTTCCCTTTAGAAGAT+TGG - chr1.3:61714579-61714598 None:intergenic 30.0%
! ATTGTTCCCTTTAGAAGATT+GGG - chr1.3:61714578-61714597 None:intergenic 30.0%
! CTGCTTATGATCTTGATAAT+TGG + chr1.3:61714218-61714237 MS.gene20846:CDS 30.0%
! GTCCAAATGTGAACATTTTT+AGG + chr1.3:61714056-61714075 MS.gene20846:CDS 30.0%
! TAAGAAATTGTTTGGGGTAA+AGG + chr1.3:61716090-61716109 MS.gene20846:intron 30.0%
! TTTGATGATTGTTACAGGTT+TGG + chr1.3:61714919-61714938 MS.gene20846:intron 30.0%
! TTTGCTACTGTTCAATTTTC+AGG + chr1.3:61716403-61716422 MS.gene20846:intron 30.0%
! TTTTCATTGATCTAACGTAG+CGG + chr1.3:61713959-61713978 MS.gene20846:intron 30.0%
!! AAAGGTACCCTTTATGTTTA+TGG + chr1.3:61714270-61714289 MS.gene20846:intron 30.0%
!! AGTTTTATATAAAAGGAGGG+AGG + chr1.3:61716304-61716323 MS.gene20846:intron 30.0%
!!! AAGTTTTTAAGGTATCCTTG+TGG - chr1.3:61716454-61716473 None:intergenic 30.0%
!!! AGGGAGGTAGTAAAATTTTT+TGG + chr1.3:61716320-61716339 MS.gene20846:intron 30.0%
!!! AGTTTTTAAGGTATCCTTGT+GGG - chr1.3:61716453-61716472 None:intergenic 30.0%
!!! GGTTAACAAGCCTTTTTTAA+CGG - chr1.3:61714987-61715006 None:intergenic 30.0%
!!! TGTTTTTTAGGTATTGCTTG+TGG + chr1.3:61715525-61715544 MS.gene20846:intron 30.0%
AAAAACGATATGTTCTCCCA+GGG - chr1.3:61716522-61716541 None:intergenic 35.0%
AAAAACTACGCTCATCAAGA+TGG - chr1.3:61716071-61716090 None:intergenic 35.0%
AAATGGTAAGTTCTTTGTGG+AGG - chr1.3:61713607-61713626 None:intergenic 35.0%
AACCAAATGGATACACTACA+GGG - chr1.3:61716552-61716571 None:intergenic 35.0%
AAGAATGATCCTCGAATTGT+AGG + chr1.3:61715849-61715868 MS.gene20846:CDS 35.0%
AAGGAATAGGGAAATATGCA+AGG + chr1.3:61715565-61715584 MS.gene20846:CDS 35.0%
AAGGTTGACATTGCAAGAAA+AGG + chr1.3:61713674-61713693 MS.gene20846:CDS 35.0%
AATGCTACTGTCACTATGAT+CGG + chr1.3:61715253-61715272 MS.gene20846:CDS 35.0%
ACAATTCAGACGTGCAAAAT+TGG + chr1.3:61715406-61715425 MS.gene20846:intron 35.0%
ACCAGACATTAAGACCAAAA+TGG - chr1.3:61715805-61715824 None:intergenic 35.0%
ACCCAAAATGCCGTTAAAAA+AGG + chr1.3:61714974-61714993 MS.gene20846:CDS 35.0%
ACTTCATGGAGTTTCAAATG+TGG + chr1.3:61713770-61713789 MS.gene20846:CDS 35.0%
AGATGGTACTAACACTTTGT+TGG + chr1.3:61716753-61716772 MS.gene20846:CDS 35.0%
AGCACCATTTACATCAGTTT+CGG - chr1.3:61715008-61715027 None:intergenic 35.0%
AGTGACAGTAGCATTAGAAT+TGG - chr1.3:61715248-61715267 None:intergenic 35.0%
ATCAGATTGTGATTCTGTTG+GGG + chr1.3:61714723-61714742 MS.gene20846:CDS 35.0%
ATGAGGTTAGGAATGTTTGA+TGG + chr1.3:61715052-61715071 MS.gene20846:CDS 35.0%
ATTATCTAGTGCACCAAAAG+TGG + chr1.3:61716603-61716622 MS.gene20846:CDS 35.0%
ATTGTGCTTCTTAAGAACAC+TGG + chr1.3:61715169-61715188 MS.gene20846:CDS 35.0%
CAAACATTCCTAACCTCATT+TGG - chr1.3:61715051-61715070 None:intergenic 35.0%
CAATTCAGACGTGCAAAATT+GGG + chr1.3:61715407-61715426 MS.gene20846:intron 35.0%
CACTTCAAGAACAAACACTA+GGG + chr1.3:61716989-61717008 MS.gene20846:CDS 35.0%
CTTCATGGAGTTTCAAATGT+GGG + chr1.3:61713771-61713790 MS.gene20846:CDS 35.0%
GACATTAAGACCAAAATGGT+TGG - chr1.3:61715801-61715820 None:intergenic 35.0%
GATTGTTACAGGTTTGGATT+TGG + chr1.3:61714925-61714944 MS.gene20846:intron 35.0%
GCAAAATGGTAAGTTCTTTG+TGG - chr1.3:61713610-61713629 None:intergenic 35.0%
GTAGTGTATCCATTTGGTTA+TGG + chr1.3:61716553-61716572 MS.gene20846:CDS 35.0%
GTATCAGATTGTGATTCTGT+TGG + chr1.3:61714721-61714740 MS.gene20846:CDS 35.0%
GTGACAGTAGCATTAGAATT+GGG - chr1.3:61715247-61715266 None:intergenic 35.0%
TAAAAACGATATGTTCTCCC+AGG - chr1.3:61716523-61716542 None:intergenic 35.0%
TAACCAAATGGATACACTAC+AGG - chr1.3:61716553-61716572 None:intergenic 35.0%
TATCTCTCAAAATGCACTCT+AGG + chr1.3:61716141-61716160 MS.gene20846:intron 35.0%
TATTTCCCTATTCCTTGTAG+TGG - chr1.3:61715561-61715580 None:intergenic 35.0%
TCACTTCAAGAACAAACACT+AGG + chr1.3:61716988-61717007 MS.gene20846:CDS 35.0%
TCCAAACAATATATCCGCAA+TGG - chr1.3:61715916-61715935 None:intergenic 35.0%
TCGCTTTCACTTTAATGCAA+AGG + chr1.3:61714252-61714271 MS.gene20846:CDS 35.0%
TCTTAAAAATTGCTCGAGTC+CGG + chr1.3:61715998-61716017 MS.gene20846:intron 35.0%
TGATGATAAGCAATTTGGGT+CGG + chr1.3:61715626-61715645 MS.gene20846:CDS 35.0%
TGTGATGTGTTCTTACAATC+AGG + chr1.3:61714526-61714545 MS.gene20846:CDS 35.0%
TTATACTCATGTCTACATGC+AGG + chr1.3:61714430-61714449 MS.gene20846:intron 35.0%
TTCATTCAATGCTTCCTTGT+GGG + chr1.3:61713863-61713882 MS.gene20846:CDS 35.0%
TTTCTCCTTCTCTTATTGAG+TGG + chr1.3:61713543-61713562 MS.gene20846:CDS 35.0%
! CACGATGATGCATTTTTCTT+CGG + chr1.3:61714859-61714878 MS.gene20846:intron 35.0%
! CTGTCATTGCCAAGTTTTTA+AGG - chr1.3:61716465-61716484 None:intergenic 35.0%
! TCAACAAGACCTTGTTTCAA+AGG + chr1.3:61715755-61715774 MS.gene20846:CDS 35.0%
! TCTTGATAATTGGAATGGTG+TGG + chr1.3:61714228-61714247 MS.gene20846:CDS 35.0%
! TTGTTCCCTTTAGAAGATTG+GGG - chr1.3:61714577-61714596 None:intergenic 35.0%
!! CTGGTGTTGATGTATAATGT+TGG - chr1.3:61714762-61714781 None:intergenic 35.0%
!! TGTATGTAAGCTTTTGAGTG+TGG + chr1.3:61716891-61716910 MS.gene20846:CDS 35.0%
!!! ACACGTGTTTTGAGAAATGT+TGG + chr1.3:61715471-61715490 MS.gene20846:intron 35.0%
!!! ACCATTTTGGTCTTAATGTC+TGG + chr1.3:61715801-61715820 MS.gene20846:CDS 35.0%
!!! AGCCTTTTTTAACGGCATTT+TGG - chr1.3:61714979-61714998 None:intergenic 35.0%
!!! ATTTTGGTCTTAATGTCTGG+TGG + chr1.3:61715804-61715823 MS.gene20846:CDS 35.0%
!!! CACGTGTTTTGAGAAATGTT+GGG + chr1.3:61715472-61715491 MS.gene20846:intron 35.0%
!!! GATGCATGTTTTGATAAACG+TGG - chr1.3:61715373-61715392 None:intergenic 35.0%
!!! GATGCTACTGTTTTAGTGAT+GGG + chr1.3:61715672-61715691 MS.gene20846:CDS 35.0%
!!! GCCTTTTTTAACGGCATTTT+GGG - chr1.3:61714978-61714997 None:intergenic 35.0%
!!! TACTGTTTTAGTGATGGGAT+TGG + chr1.3:61715677-61715696 MS.gene20846:CDS 35.0%
!!! TCTTTGTGGAGGTGTTTTTT+GGG - chr1.3:61713596-61713615 None:intergenic 35.0%
!!! TGTTTTGAGAAATGTTGGGA+GGG + chr1.3:61715476-61715495 MS.gene20846:intron 35.0%
!!! TTCTTTGTGGAGGTGTTTTT+TGG - chr1.3:61713597-61713616 None:intergenic 35.0%
!!! TTTTGGTCTTAATGTCTGGT+GGG + chr1.3:61715805-61715824 MS.gene20846:CDS 35.0%
!!! TTTTTGGGTCACATGCAAAA+GGG - chr1.3:61713581-61713600 None:intergenic 35.0%
!!! TTTTTTGGGTCACATGCAAA+AGG - chr1.3:61713582-61713601 None:intergenic 35.0%
!!! TTTTTTTCTTGTGTCCGGAT+GGG - chr1.3:61716029-61716048 None:intergenic 35.0%
AACAGACAGTAGTCGGTTAA+AGG + chr1.3:61714171-61714190 MS.gene20846:CDS 40.0%
ACAAGTCCACTACAAGGAAT+AGG + chr1.3:61715552-61715571 MS.gene20846:CDS 40.0%
ACACACTTACAGTCCAAATG+AGG + chr1.3:61715035-61715054 MS.gene20846:CDS 40.0%
ACAGGTTTGGATTTGGATTG+TGG + chr1.3:61714932-61714951 MS.gene20846:intron 40.0%
ACCAGTCCTATCTACCATTT+CGG - chr1.3:61715718-61715737 None:intergenic 40.0%
AGTTATGTGAGAGGACTACA+GGG + chr1.3:61714148-61714167 MS.gene20846:CDS 40.0%
ATCACTGCCTATACCAACAA+GGG + chr1.3:61713635-61713654 MS.gene20846:CDS 40.0%
CAAGTCCACTACAAGGAATA+GGG + chr1.3:61715553-61715572 MS.gene20846:CDS 40.0%
CACGAAAAATCATCGTACTG+TGG + chr1.3:61715210-61715229 MS.gene20846:CDS 40.0%
CATGTGCCTGCATAAAACAA+GGG - chr1.3:61715295-61715314 None:intergenic 40.0%
CTTACAGTCCAAATGAGGTT+AGG + chr1.3:61715040-61715059 MS.gene20846:CDS 40.0%
CTTCATTCAATGCTTCCTTG+TGG + chr1.3:61713862-61713881 MS.gene20846:CDS 40.0%
GAAAGTCTATGTTCCTGCTA+AGG + chr1.3:61716840-61716859 MS.gene20846:CDS 40.0%
GAGCTAAGTTACCTATGACA+TGG + chr1.3:61716425-61716444 MS.gene20846:CDS 40.0%
GCCATTGCGGATATATTGTT+TGG + chr1.3:61715912-61715931 MS.gene20846:CDS 40.0%
GCGTATTTACCTGCTAGAAT+TGG - chr1.3:61714124-61714143 None:intergenic 40.0%
GGGGTACATAGTATTCACAT+TGG + chr1.3:61716946-61716965 MS.gene20846:CDS 40.0%
TCATTCACCCTTGTTGGTAT+AGG - chr1.3:61713645-61713664 None:intergenic 40.0%
TCCTTCACACACATCCTAAA+TGG - chr1.3:61714491-61714510 None:intergenic 40.0%
TGAATACTATGTACCCCCAT+TGG - chr1.3:61716943-61716962 None:intergenic 40.0%
TTGGGATCAAAGGTTATGAG+TGG + chr1.3:61713736-61713755 MS.gene20846:CDS 40.0%
! AGACCTTGTTTCAAAGGTAG+CGG + chr1.3:61715761-61715780 MS.gene20846:CDS 40.0%
! CACAGTACGATGATTTTTCG+TGG - chr1.3:61715212-61715231 None:intergenic 40.0%
! CTCAAAACACGTGTTTTGTC+TGG - chr1.3:61715465-61715484 None:intergenic 40.0%
! CTTCTAAAGGGAACAATTCG+TGG + chr1.3:61714581-61714600 MS.gene20846:CDS 40.0%
! CTTTGTTTGAGCTGTTTCCA+CGG - chr1.3:61716654-61716673 None:intergenic 40.0%
! GGAGAAATACAATGGTGATG+AGG - chr1.3:61713530-61713549 None:intergenic 40.0%
! GTGTAACTAGCCTGCTTTAA+TGG - chr1.3:61714803-61714822 None:intergenic 40.0%
! TCATTACAAACCTGGGTTAG+CGG - chr1.3:61715940-61715959 None:intergenic 40.0%
! TCCAGGATTACCAAAAGTGT+TGG - chr1.3:61714354-61714373 None:intergenic 40.0%
! TTTAGGATGTGTGTGAAGGA+AGG + chr1.3:61714491-61714510 MS.gene20846:CDS 40.0%
!! ACACGTTCAATGTGCCATTT+AGG + chr1.3:61714474-61714493 MS.gene20846:CDS 40.0%
!! CATTTTGGGTATGTTGTGCA+AGG - chr1.3:61714964-61714983 None:intergenic 40.0%
!! GATTACCAAAAGTGTTGGAC+TGG - chr1.3:61714349-61714368 None:intergenic 40.0%
!! GGAAGCATTGAATGAAGCAA+CGG - chr1.3:61713859-61713878 None:intergenic 40.0%
!! TCCAACACTTTTGGTAATCC+TGG + chr1.3:61714350-61714369 MS.gene20846:intron 40.0%
!! TGAGTGTGGTTGATAAGTCT+GGG + chr1.3:61716905-61716924 MS.gene20846:CDS 40.0%
!! TTGAGTGTGGTTGATAAGTC+TGG + chr1.3:61716904-61716923 MS.gene20846:CDS 40.0%
!!! AAAGCCACTAGTTGCTTTTG+TGG - chr1.3:61716817-61716836 None:intergenic 40.0%
!!! CTTGTTTTATGCAGGCACAT+GGG + chr1.3:61715294-61715313 MS.gene20846:intron 40.0%
!!! GGATGCTACTGTTTTAGTGA+TGG + chr1.3:61715671-61715690 MS.gene20846:CDS 40.0%
!!! GTGTTTTGAGAAATGTTGGG+AGG + chr1.3:61715475-61715494 MS.gene20846:intron 40.0%
!!! GTTTTGAGAAATGTTGGGAG+GGG + chr1.3:61715477-61715496 MS.gene20846:intron 40.0%
!!! GTTTTTTTCTTGTGTCCGGA+TGG - chr1.3:61716030-61716049 None:intergenic 40.0%
AAACAGTAGCATCCGCTTGA+CGG - chr1.3:61715665-61715684 None:intergenic 45.0%
ACAAGGGTGAATGACCTCAT+TGG + chr1.3:61713651-61713670 MS.gene20846:CDS 45.0%
ACCAAAAGTGGTCTCAGTTC+CGG + chr1.3:61716615-61716634 MS.gene20846:CDS 45.0%
ACGTAGCGGTAATAATGTGC+AGG + chr1.3:61713973-61713992 MS.gene20846:intron 45.0%
ACTATGATCGGCAACTATGC+TGG + chr1.3:61715265-61715284 MS.gene20846:CDS 45.0%
AGACAGTAGTCGGTTAAAGG+TGG + chr1.3:61714174-61714193 MS.gene20846:CDS 45.0%
AGGGAACAATTCGTGGTCAA+TGG + chr1.3:61714588-61714607 MS.gene20846:CDS 45.0%
ATGAGGTCATTCACCCTTGT+TGG - chr1.3:61713651-61713670 None:intergenic 45.0%
CAGTTATGTGAGAGGACTAC+AGG + chr1.3:61714147-61714166 MS.gene20846:CDS 45.0%
CATCACTGCCTATACCAACA+AGG + chr1.3:61713634-61713653 MS.gene20846:CDS 45.0%
CCATGTGCCTGCATAAAACA+AGG - chr1.3:61715296-61715315 None:intergenic 45.0%
CCTCACCACTCAATAAGAGA+AGG - chr1.3:61713551-61713570 None:intergenic 45.0%
CCTTCTCTTATTGAGTGGTG+AGG + chr1.3:61713548-61713567 MS.gene20846:CDS 45.0%
CTAGCCTGCTTTAATGGCAT+CGG - chr1.3:61714797-61714816 None:intergenic 45.0%
CTCTTGAAGCTGCAAGACAA+GGG + chr1.3:61715146-61715165 MS.gene20846:CDS 45.0%
CTGTAGTCCTCTCACATAAC+TGG - chr1.3:61714149-61714168 None:intergenic 45.0%
GACTAGGAGAATTCCAATGG+GGG + chr1.3:61716927-61716946 MS.gene20846:CDS 45.0%
GCAATGTCAACCTTCCAATG+AGG - chr1.3:61713668-61713687 None:intergenic 45.0%
GCTGACCCCAATCTTCTAAA+GGG + chr1.3:61714569-61714588 MS.gene20846:CDS 45.0%
GGACTAGGAGAATTCCAATG+GGG + chr1.3:61716926-61716945 MS.gene20846:CDS 45.0%
GGATACACAAGTCCACTACA+AGG + chr1.3:61715546-61715565 MS.gene20846:CDS 45.0%
GGATCAAAGGTTATGAGTGG+TGG + chr1.3:61713739-61713758 MS.gene20846:CDS 45.0%
GGGACTAGGAGAATTCCAAT+GGG + chr1.3:61716925-61716944 MS.gene20846:CDS 45.0%
GGGATTGGATCAGTCAATTG+AGG + chr1.3:61715692-61715711 MS.gene20846:CDS 45.0%
GTGGTCAATGGCGTCTTAAT+GGG + chr1.3:61714600-61714619 MS.gene20846:CDS 45.0%
GTGTGTGAAGGAAGGTAATG+TGG + chr1.3:61714499-61714518 MS.gene20846:CDS 45.0%
GTTAGTGAACAATGCTGCTG+CGG + chr1.3:61713704-61713723 MS.gene20846:CDS 45.0%
TAACCTTTGATCCCAACCCT+TGG - chr1.3:61713732-61713751 None:intergenic 45.0%
TACAGGGAACAGACAGTAGT+CGG + chr1.3:61714164-61714183 MS.gene20846:CDS 45.0%
TCAGTCAATTGAGGCCGAAA+TGG + chr1.3:61715701-61715720 MS.gene20846:CDS 45.0%
TCGAATTGTAGGCGTCTTGT+GGG + chr1.3:61715860-61715879 MS.gene20846:CDS 45.0%
TGCTAGAATTGGATCCTCAC+CGG - chr1.3:61714113-61714132 None:intergenic 45.0%
TGCTGACCCCAATCTTCTAA+AGG + chr1.3:61714568-61714587 MS.gene20846:CDS 45.0%
TGGGACTAGGAGAATTCCAA+TGG + chr1.3:61716924-61716943 MS.gene20846:CDS 45.0%
TGGGTATGTTGTGCAAGGAA+AGG - chr1.3:61714959-61714978 None:intergenic 45.0%
TTGAGGCCGAAATGGTAGAT+AGG + chr1.3:61715709-61715728 MS.gene20846:CDS 45.0%
! ACCAGCAGGTAATGGTCAAT+GGG + chr1.3:61716789-61716808 MS.gene20846:CDS 45.0%
! AGCATTGAATGAAGCAACGG+TGG - chr1.3:61713856-61713875 None:intergenic 45.0%
! CGATGATTTTTCGTGGAGAG+AGG - chr1.3:61715205-61715224 None:intergenic 45.0%
! GCCATTTAGGATGTGTGTGA+AGG + chr1.3:61714487-61714506 MS.gene20846:CDS 45.0%
!! ACATTTTTAGGGACCCACGA+TGG + chr1.3:61714068-61714087 MS.gene20846:CDS 45.0%
!! AGGACTGGTTTACTTCTTCC+TGG + chr1.3:61715729-61715748 MS.gene20846:CDS 45.0%
!! ATTTTTAGGGACCCACGATG+GGG + chr1.3:61714070-61714089 MS.gene20846:CDS 45.0%
!! CATTTTTAGGGACCCACGAT+GGG + chr1.3:61714069-61714088 MS.gene20846:CDS 45.0%
!! GGACTGGTTTACTTCTTCCT+GGG + chr1.3:61715730-61715749 MS.gene20846:CDS 45.0%
!! TGGTTGATAAGTCTGGGACT+AGG + chr1.3:61716911-61716930 MS.gene20846:CDS 45.0%
!!! CCTTGTTTTATGCAGGCACA+TGG + chr1.3:61715293-61715312 MS.gene20846:intron 45.0%
AACAGTAGCATCCGCTTGAC+GGG - chr1.3:61715664-61715683 None:intergenic 50.0%
AGAGCCAAGTCTTGGTGAGT+TGG - chr1.3:61715130-61715149 None:intergenic 50.0%
AGAGTGACACATGCACGATG+TGG + chr1.3:61716682-61716701 MS.gene20846:CDS 50.0%
AGATTGGGGTCAGCACAAGT+AGG - chr1.3:61714563-61714582 None:intergenic 50.0%
AGGTTATGAGTGGTGGTCAG+AGG + chr1.3:61713746-61713765 MS.gene20846:CDS 50.0%
ATGAGACCAAGCTCATCCAC+AGG + chr1.3:61716493-61716512 MS.gene20846:CDS 50.0%
ATGTACAACGGAGGAATGGC+TGG + chr1.3:61714019-61714038 MS.gene20846:CDS 50.0%
CACAAGACGCCTACAATTCG+AGG - chr1.3:61715861-61715880 None:intergenic 50.0%
CACTCCAACTCACCAAGACT+TGG + chr1.3:61715123-61715142 MS.gene20846:CDS 50.0%
CAGCTTCAAGAGCCAAGTCT+TGG - chr1.3:61715138-61715157 None:intergenic 50.0%
CATCGTACTGTGGCAGTCAT+TGG + chr1.3:61715220-61715239 MS.gene20846:CDS 50.0%
CATTGACCATTACCTGCTGG+TGG - chr1.3:61716790-61716809 None:intergenic 50.0%
CCTATGACATGGTACCCACA+AGG + chr1.3:61716436-61716455 MS.gene20846:CDS 50.0%
CCTTGTGGGAAGCAATTGGA+CGG + chr1.3:61713877-61713896 MS.gene20846:CDS 50.0%
CCTTGTGGGTACCATGTCAT+AGG - chr1.3:61716439-61716458 None:intergenic 50.0%
CGTGGTCAATGGCGTCTTAA+TGG + chr1.3:61714599-61714618 MS.gene20846:CDS 50.0%
CTACATGCAGGTTAGCAAGC+AGG + chr1.3:61714442-61714461 MS.gene20846:intron 50.0%
CTCGAATTGTAGGCGTCTTG+TGG + chr1.3:61715859-61715878 MS.gene20846:CDS 50.0%
CTTGTGGGAAGCAATTGGAC+GGG + chr1.3:61713878-61713897 MS.gene20846:CDS 50.0%
GAAGCAAGGGCGATGTACAA+CGG + chr1.3:61714007-61714026 MS.gene20846:CDS 50.0%
GAGCCATCTGCTCAACCATA+CGG + chr1.3:61715076-61715095 MS.gene20846:CDS 50.0%
GATGACTTGAGGGAAGCTAG+TGG - chr1.3:61713832-61713851 None:intergenic 50.0%
GATTGGGGTCAGCACAAGTA+GGG - chr1.3:61714562-61714581 None:intergenic 50.0%
GCCGAAATGGTAGATAGGAC+TGG + chr1.3:61715714-61715733 MS.gene20846:CDS 50.0%
GCTAGAATTGGATCCTCACC+GGG - chr1.3:61714112-61714131 None:intergenic 50.0%
GCTCTTGAAGCTGCAAGACA+AGG + chr1.3:61715145-61715164 MS.gene20846:CDS 50.0%
GCTTCCTTGTGGGAAGCAAT+TGG + chr1.3:61713873-61713892 MS.gene20846:CDS 50.0%
GGACCAGGAACTAAGTTTGG+TGG + chr1.3:61713792-61713811 MS.gene20846:CDS 50.0%
GGAGTTTCAAATGTGGGACC+AGG + chr1.3:61713777-61713796 MS.gene20846:CDS 50.0%
GGCACCACAAAAGCAACTAG+TGG + chr1.3:61716810-61716829 MS.gene20846:CDS 50.0%
GGCAGTGATGCCTTGCAAAA+TGG - chr1.3:61713624-61713643 None:intergenic 50.0%
GGCCCTGTAGTGTATCCATT+TGG + chr1.3:61716547-61716566 MS.gene20846:CDS 50.0%
GGGTGAATGACCTCATTGGA+AGG + chr1.3:61713655-61713674 MS.gene20846:CDS 50.0%
GGTGAGGATCCAATTCTAGC+AGG + chr1.3:61714112-61714131 MS.gene20846:CDS 50.0%
GTGGGACCAGGAACTAAGTT+TGG + chr1.3:61713789-61713808 MS.gene20846:CDS 50.0%
GTTCCAAGGGTTGGGATCAA+AGG + chr1.3:61713726-61713745 MS.gene20846:CDS 50.0%
GTTGGAGTGCACACATCAGT+TGG - chr1.3:61715112-61715131 None:intergenic 50.0%
TACGCTGCCAGTTATGTGAG+AGG + chr1.3:61714139-61714158 MS.gene20846:CDS 50.0%
TCAGTACCACCAGCAGGTAA+TGG + chr1.3:61716781-61716800 MS.gene20846:CDS 50.0%
TCTAAATGCAGCCCGTCAAG+CGG + chr1.3:61715650-61715669 MS.gene20846:CDS 50.0%
TGAGACCAAGCTCATCCACA+GGG + chr1.3:61716494-61716513 MS.gene20846:CDS 50.0%
TGATCGGCAACTATGCTGGT+AGG + chr1.3:61715269-61715288 MS.gene20846:intron 50.0%
TGCACACATCAGTTGGACCA+AGG - chr1.3:61715105-61715124 None:intergenic 50.0%
TGGCCACCAAACTTAGTTCC+TGG - chr1.3:61713798-61713817 None:intergenic 50.0%
TGTACAACGGAGGAATGGCT+GGG + chr1.3:61714020-61714039 MS.gene20846:CDS 50.0%
TTGCCGTATGGTTGAGCAGA+TGG - chr1.3:61715082-61715101 None:intergenic 50.0%
! ACCGGAACTGAGACCACTTT+TGG - chr1.3:61716619-61716638 None:intergenic 50.0%
! CAACGGTGGTGATGACTTGA+GGG - chr1.3:61713842-61713861 None:intergenic 50.0%
! CACCAGCAGGTAATGGTCAA+TGG + chr1.3:61716788-61716807 MS.gene20846:CDS 50.0%
! CCAGTCCAGTCCAACACTTT+TGG + chr1.3:61714341-61714360 MS.gene20846:intron 50.0%
! GAATGGCTGGGTTGACATAC+TGG + chr1.3:61714032-61714051 MS.gene20846:CDS 50.0%
! TGTTTGAGCTGTTTCCACGG+CGG - chr1.3:61716651-61716670 None:intergenic 50.0%
! TTGTTTGGAACCGCTAACCC+AGG + chr1.3:61715927-61715946 MS.gene20846:CDS 50.0%
!! ACAAGGTCTTGTTGATGCCC+AGG - chr1.3:61715750-61715769 None:intergenic 50.0%
!! CAGCCGCTACCTTTGAAACA+AGG - chr1.3:61715767-61715786 None:intergenic 50.0%
!! CCAAAAGTGTTGGACTGGAC+TGG - chr1.3:61714344-61714363 None:intergenic 50.0%
!!! GGTAGGCCCTTGTTTTATGC+AGG + chr1.3:61715286-61715305 MS.gene20846:intron 50.0%
ACAATGCTGCTGCGGTTCCA+AGG + chr1.3:61713712-61713731 MS.gene20846:CDS 55.0%
ACTCGTTGCTGAGCCTTAGC+AGG - chr1.3:61716856-61716875 None:intergenic 55.0%
AGCTAGTGGCAGCTGGGAAT+TGG - chr1.3:61713818-61713837 None:intergenic 55.0%
AGGTTGCTTCCGACGAAGCA+AGG + chr1.3:61713993-61714012 MS.gene20846:intron 55.0%
ATTGTAGGCGTCTTGTGGGC+TGG + chr1.3:61715864-61715883 MS.gene20846:CDS 55.0%
CAAAATGGTTGGGCCTCTCG+AGG - chr1.3:61715790-61715809 None:intergenic 55.0%
CAATGCTGCTGCGGTTCCAA+GGG + chr1.3:61713713-61713732 MS.gene20846:CDS 55.0%
CATGCCACATTCGCACAACC+GGG - chr1.3:61715603-61715622 None:intergenic 55.0%
CCGTCCAATTGCTTCCCACA+AGG - chr1.3:61713880-61713899 None:intergenic 55.0%
CTAAGGCTCAGCAACGAGTG+AGG + chr1.3:61716857-61716876 MS.gene20846:CDS 55.0%
GCAAGGACTATTCACGAGCC+CGG + chr1.3:61715582-61715601 MS.gene20846:CDS 55.0%
GCAGGTTAGCAAGCAGGACA+TGG + chr1.3:61714448-61714467 MS.gene20846:intron 55.0%
GCATGCCACATTCGCACAAC+CGG - chr1.3:61715604-61715623 None:intergenic 55.0%
GCCCATTGACCATTACCTGC+TGG - chr1.3:61716793-61716812 None:intergenic 55.0%
GCTCAACCATACGGCAACCT+TGG + chr1.3:61715085-61715104 MS.gene20846:CDS 55.0%
GCTGCCGATGCCATTAAAGC+AGG + chr1.3:61714790-61714809 MS.gene20846:CDS 55.0%
GCTGGTTATCCTGGTCAAGC+CGG + chr1.3:61715882-61715901 MS.gene20846:CDS 55.0%
GGCGATGTACAACGGAGGAA+TGG + chr1.3:61714015-61714034 MS.gene20846:CDS 55.0%
GGTTGCTTCCGACGAAGCAA+GGG + chr1.3:61713994-61714013 MS.gene20846:intron 55.0%
GTACATCGCCCTTGCTTCGT+CGG - chr1.3:61714005-61714024 None:intergenic 55.0%
GTGGTCTCAGTTCCGGTAGA+CGG + chr1.3:61716622-61716641 MS.gene20846:CDS 55.0%
GTGTTCTCAGTACCACCAGC+AGG + chr1.3:61716775-61716794 MS.gene20846:CDS 55.0%
GTTGGACCAAGGTTGCCGTA+TGG - chr1.3:61715094-61715113 None:intergenic 55.0%
TGTGTCCGGATGGGTGAATC+CGG - chr1.3:61716020-61716039 None:intergenic 55.0%
! CTCGAGAGGCCCAACCATTT+TGG + chr1.3:61715788-61715807 MS.gene20846:CDS 55.0%
! GCAACGGTGGTGATGACTTG+AGG - chr1.3:61713843-61713862 None:intergenic 55.0%
!! GTCTTGTGGGCTGGTTATCC+TGG + chr1.3:61715873-61715892 MS.gene20846:CDS 55.0%
!! TGGTGGTCAGAGGCACTTCA+TGG + chr1.3:61713756-61713775 MS.gene20846:CDS 55.0%
ATCCGCAATGGCAGCACCAC+CGG - chr1.3:61715904-61715923 None:intergenic 60.0%
CGAGTCCGGATTCACCCATC+CGG + chr1.3:61716012-61716031 MS.gene20846:intron 60.0%
CTGCTGCGGTTCCAAGGGTT+GGG + chr1.3:61713718-61713737 MS.gene20846:CDS 60.0%
GAGGGAAGCTAGTGGCAGCT+GGG - chr1.3:61713824-61713843 None:intergenic 60.0%
GCAAGGGCGATGTACAACGG+AGG + chr1.3:61714010-61714029 MS.gene20846:CDS 60.0%
GGGTACCCTGTGGATGAGCT+TGG - chr1.3:61716502-61716521 None:intergenic 60.0%
GGTTATCCTGGTCAAGCCGG+TGG + chr1.3:61715885-61715904 MS.gene20846:CDS 60.0%
TGAGGGAAGCTAGTGGCAGC+TGG - chr1.3:61713825-61713844 None:intergenic 60.0%
! AGCTCATCCACAGGGTACCC+TGG + chr1.3:61716502-61716521 MS.gene20846:CDS 60.0%
! GCATCGGCAGCAGCTTCTTC+TGG - chr1.3:61714781-61714800 None:intergenic 60.0%
! GCTCATCCACAGGGTACCCT+GGG + chr1.3:61716503-61716522 MS.gene20846:CDS 60.0%
! TGTTCTCCCAGGGTACCCTG+TGG - chr1.3:61716512-61716531 None:intergenic 60.0%
! TTGAGCTGTTTCCACGGCGG+TGG - chr1.3:61716648-61716667 None:intergenic 60.0%
CCTGTCCACGACCCCATCGT+GGG - chr1.3:61714084-61714103 None:intergenic 65.0%
CGAGCCCGGTTGTGCGAATG+TGG + chr1.3:61715596-61715615 MS.gene20846:CDS 65.0%
GCTGCTGCGGTTCCAAGGGT+TGG + chr1.3:61713717-61713736 MS.gene20846:CDS 65.0%
GGTCGTGGACAGGAGACTCC+CGG + chr1.3:61714091-61714110 MS.gene20846:CDS 65.0%
TCCTGTCCACGACCCCATCG+TGG - chr1.3:61714085-61714104 None:intergenic 65.0%
TGGACAGGAGACTCCCGGTG+AGG + chr1.3:61714096-61714115 MS.gene20846:CDS 65.0%
! AAGGTAGCGGCTGCCTCGAG+AGG + chr1.3:61715774-61715793 MS.gene20846:CDS 65.0%
!! AGCCGGTGGTGCTGCCATTG+CGG + chr1.3:61715899-61715918 MS.gene20846:CDS 65.0%
AGGGACCCACGATGGGGTCG+TGG + chr1.3:61714076-61714095 MS.gene20846:CDS 70.0%
CCCACGATGGGGTCGTGGAC+AGG + chr1.3:61714081-61714100 MS.gene20846:CDS 70.0%
!! GCAGCACCACCGGCTTGACC+AGG - chr1.3:61715894-61715913 None:intergenic 70.0%
CCACGGCGGTGGCCGTCTAC+CGG - chr1.3:61716637-61716656 None:intergenic 75.0%
! CCGGTAGACGGCCACCGCCG+TGG + chr1.3:61716634-61716653 MS.gene20846:CDS 80.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 61713516 61717026 61713516 ID=MS.gene20846
chr1.3 mRNA 61713516 61717026 61713516 ID=MS.gene20846.t1;Parent=MS.gene20846
chr1.3 exon 61713516 61713899 61713516 ID=MS.gene20846.t1.exon1;Parent=MS.gene20846.t1
chr1.3 CDS 61713516 61713899 61713516 ID=cds.MS.gene20846.t1;Parent=MS.gene20846.t1
chr1.3 exon 61713995 61714273 61713995 ID=MS.gene20846.t1.exon2;Parent=MS.gene20846.t1
chr1.3 CDS 61713995 61714273 61713995 ID=cds.MS.gene20846.t1;Parent=MS.gene20846.t1
chr1.3 exon 61714452 61714621 61714452 ID=MS.gene20846.t1.exon3;Parent=MS.gene20846.t1
chr1.3 CDS 61714452 61714621 61714452 ID=cds.MS.gene20846.t1;Parent=MS.gene20846.t1
chr1.3 exon 61714714 61714811 61714714 ID=MS.gene20846.t1.exon4;Parent=MS.gene20846.t1
chr1.3 CDS 61714714 61714811 61714714 ID=cds.MS.gene20846.t1;Parent=MS.gene20846.t1
chr1.3 exon 61714936 61715286 61714936 ID=MS.gene20846.t1.exon5;Parent=MS.gene20846.t1
chr1.3 CDS 61714936 61715286 61714936 ID=cds.MS.gene20846.t1;Parent=MS.gene20846.t1
chr1.3 exon 61715535 61715948 61715535 ID=MS.gene20846.t1.exon6;Parent=MS.gene20846.t1
chr1.3 CDS 61715535 61715948 61715535 ID=cds.MS.gene20846.t1;Parent=MS.gene20846.t1
chr1.3 exon 61716425 61717026 61716425 ID=MS.gene20846.t1.exon7;Parent=MS.gene20846.t1
chr1.3 CDS 61716425 61717026 61716425 ID=cds.MS.gene20846.t1;Parent=MS.gene20846.t1
Gene Sequence

>MS.gene20846

ATGGATTCAATCCTCATCACCATTGTATTTCTCCTTCTCTTATTGAGTGGTGAGGCACGTGACCCTTTTGCATGTGACCCAAAAAACACCTCCACAAAGAACTTACCATTTTGCAAGGCATCACTGCCTATACCAACAAGGGTGAATGACCTCATTGGAAGGTTGACATTGCAAGAAAAGGTTAACATGTTAGTGAACAATGCTGCTGCGGTTCCAAGGGTTGGGATCAAAGGTTATGAGTGGTGGTCAGAGGCACTTCATGGAGTTTCAAATGTGGGACCAGGAACTAAGTTTGGTGGCCAATTCCCAGCTGCCACTAGCTTCCCTCAAGTCATCACCACCGTTGCTTCATTCAATGCTTCCTTGTGGGAAGCAATTGGACGGGTCAGCTATATTTTGTTAATGCAAAACGCTATACTCTTTTTAAAGCAATACTATGATTTTTTTCATTGATCTAACGTAGCGGTAATAATGTGCAGGTTGCTTCCGACGAAGCAAGGGCGATGTACAACGGAGGAATGGCTGGGTTGACATACTGGAGTCCAAATGTGAACATTTTTAGGGACCCACGATGGGGTCGTGGACAGGAGACTCCCGGTGAGGATCCAATTCTAGCAGGTAAATACGCTGCCAGTTATGTGAGAGGACTACAGGGAACAGACAGTAGTCGGTTAAAGGTGGCTGCTTCATGTAAACACTTTACTGCTTATGATCTTGATAATTGGAATGGTGTGGATCGCTTTCACTTTAATGCAAAGGTACCCTTTATGTTTATGGTATACACTTCTAGATATAGGTTTGCACTTTTGTACTATGTAATATGGTCCAGTCCAGTCCAACACTTTTGGTAATCCTGGATTAAAATAGAAGAAATGTGGGCCATTCTTGTGTTTCTTTTCTAACTTTGAATATACTTATACTCATGTCTACATGCAGGTTAGCAAGCAGGACATGGAAGACACGTTCAATGTGCCATTTAGGATGTGTGTGAAGGAAGGTAATGTGGCTAGTGTGATGTGTTCTTACAATCAGGTTAATGGTGTCCCTACTTGTGCTGACCCCAATCTTCTAAAGGGAACAATTCGTGGTCAATGGCGTCTTAATGGGTAAGCTTAATTACAAATTACAATACAGTAGAAGACGTTTATTTTATTTGTTACTTTTAAAATCTTACTATATTTTCTTTGGTGTAATTTAGGTACATTGTATCAGATTGTGATTCTGTTGGGGTATTTTACACCAACCAACATTATACATCAACACCAGAAGAAGCTGCTGCCGATGCCATTAAAGCAGGCTAGTTACACTACATTATTATTATTAGTATCCAATAAATATGAACACACGATGATGCATTTTTCTTCGGCATAAAAAAACTAGGAACCTAATTAATGGTTGATATATTTGATGATTGTTACAGGTTTGGATTTGGATTGTGGACCTTTCCTTGCACAACATACCCAAAATGCCGTTAAAAAAGGCTTGTTAACCGAAACTGATGTAAATGGTGCTTTAGCAAACACACTTACAGTCCAAATGAGGTTAGGAATGTTTGATGGTGAGCCATCTGCTCAACCATACGGCAACCTTGGTCCAACTGATGTGTGCACTCCAACTCACCAAGACTTGGCTCTTGAAGCTGCAAGACAAGGGATTGTGCTTCTTAAGAACACTGGTTCATCTTTGCCTCTCTCCACGAAAAATCATCGTACTGTGGCAGTCATTGGACCCAATTCTAATGCTACTGTCACTATGATCGGCAACTATGCTGGTAGGCCCTTGTTTTATGCAGGCACATGGGACATAATTTCATAATGCAGTACTAAGATTTTTCTGTTTGATAGTTTCTCATTACCACGTTTATCAAAACATGCATCTTGTTCAAATTACACAATTCAGACGTGCAAAATTGGGATGTTTTTTTGCATGTGTCTAGATTGTGTAATCCAGACAAAACACGTGTTTTGAGAAATGTTGGGAGGGGAGAAGAGAAGTCATTTTTTCGTTTTTGTTTTTTAGGTATTGCTTGTGGATACACAAGTCCACTACAAGGAATAGGGAAATATGCAAGGACTATTCACGAGCCCGGTTGTGCGAATGTGGCATGCAATGATGATAAGCAATTTGGGTCGGCTCTAAATGCAGCCCGTCAAGCGGATGCTACTGTTTTAGTGATGGGATTGGATCAGTCAATTGAGGCCGAAATGGTAGATAGGACTGGTTTACTTCTTCCTGGGCATCAACAAGACCTTGTTTCAAAGGTAGCGGCTGCCTCGAGAGGCCCAACCATTTTGGTCTTAATGTCTGGTGGGCCTATAGATATAACTTTTGCAAAGAATGATCCTCGAATTGTAGGCGTCTTGTGGGCTGGTTATCCTGGTCAAGCCGGTGGTGCTGCCATTGCGGATATATTGTTTGGAACCGCTAACCCAGGTTTGTAATGAATCTATCTTTTTTAAGGGAACTTCTTTTCACCTATGATTCTTAAAAATTGCTCGAGTCCGGATTCACCCATCCGGACACAAGAAAAAAACATTATTTTATGTCTTTATCCATCTTGATGAGCGTAGTTTTTAAGAAATTGTTTGGGGTAAAGGTAACACTTTTTTTAACTTTTTTTCTTCTTATCTCTCAAAATGCACTCTAGGCCTAAAAAACTACATTATAAATGCATATAAACTACATTATGTGAGACTCACTCAATTTTCAATCACTATTGCAATCTGCAATCAATATTGATGAATATCATGAACAATAAGACATGTGAGTTTCTTGAAAATTTTGCAAGAGTTTTATATAAAAGGAGGGAGGTAGTAAAATTTTTTGGTGACTTTACTAGTTTTCTTTTTAAATGGTGCTAAATTTCATTAAGTGTTTAAAAGTGAGTTTTGCTACTGTTCAATTTTCAGGAGCTAAGTTACCTATGACATGGTACCCACAAGGATACCTTAAAAACTTGGCAATGACAGACATCGCAATGAGACCAAGCTCATCCACAGGGTACCCTGGGAGAACATATCGTTTTTACAACGGCCCTGTAGTGTATCCATTTGGTTATGGATTATCTTACACCAATTTTGTTCACACATTATCTAGTGCACCAAAAGTGGTCTCAGTTCCGGTAGACGGCCACCGCCGTGGAAACAGCTCAAACAAAGCAGCAATTAGAGTGACACATGCACGATGTGGCACGCTTTCCATTAGACTTGACATTGATGTTAAAAACATTGGTTCAAAAGATGGTACTAACACTTTGTTGGTGTTCTCAGTACCACCAGCAGGTAATGGTCAATGGGCACCACAAAAGCAACTAGTGGCTTTTGAGAAAGTCTATGTTCCTGCTAAGGCTCAGCAACGAGTGAGGATCGATATTCATGTATGTAAGCTTTTGAGTGTGGTTGATAAGTCTGGGACTAGGAGAATTCCAATGGGGGTACATAGTATTCACATTGGTGATGTTAAACACTTTGTATCACTTCAAGAACAAACACTAGGGACCATCAAGACTTGA
Protein sequence

>MS.gene20846.t1

MDSILITIVFLLLLLSGEARDPFACDPKNTSTKNLPFCKASLPIPTRVNDLIGRLTLQEKVNMLVNNAAAVPRVGIKGYEWWSEALHGVSNVGPGTKFGGQFPAATSFPQVITTVASFNASLWEAIGRVASDEARAMYNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPILAGKYAASYVRGLQGTDSSRLKVAASCKHFTAYDLDNWNGVDRFHFNAKVSKQDMEDTFNVPFRMCVKEGNVASVMCSYNQVNGVPTCADPNLLKGTIRGQWRLNGYIVSDCDSVGVFYTNQHYTSTPEEAAADAIKAGLDLDCGPFLAQHTQNAVKKGLLTETDVNGALANTLTVQMRLGMFDGEPSAQPYGNLGPTDVCTPTHQDLALEAARQGIVLLKNTGSSLPLSTKNHRTVAVIGPNSNATVTMIGNYAGIACGYTSPLQGIGKYARTIHEPGCANVACNDDKQFGSALNAARQADATVLVMGLDQSIEAEMVDRTGLLLPGHQQDLVSKVAAASRGPTILVLMSGGPIDITFAKNDPRIVGVLWAGYPGQAGGAAIADILFGTANPGAKLPMTWYPQGYLKNLAMTDIAMRPSSSTGYPGRTYRFYNGPVVYPFGYGLSYTNFVHTLSSAPKVVSVPVDGHRRGNSSNKAAIRVTHARCGTLSIRLDIDVKNIGSKDGTNTLLVFSVPPAGNGQWAPQKQLVAFEKVYVPAKAQQRVRIDIHVCKLLSVVDKSGTRRIPMGVHSIHIGDVKHFVSLQEQTLGTIKT