Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072706.t1 | XP_003625957.1 | 97.3 | 772 | 20 | 1 | 1 | 772 | 1 | 771 | 0.00E+00 | 1546.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072706.t1 | Q94KD8 | 72.8 | 764 | 200 | 4 | 11 | 772 | 11 | 768 | 0.0e+00 | 1173.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072706.t1 | G7KSS4 | 97.3 | 772 | 20 | 1 | 1 | 772 | 1 | 771 | 0.0e+00 | 1546.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072706.t1 | MTR_7g109390 | 97.280 | 772 | 20 | 1 | 1 | 772 | 1 | 771 | 0.0 | 1560 |
| MS.gene072706.t1 | MTR_1g087240 | 81.854 | 766 | 135 | 3 | 8 | 772 | 3 | 765 | 0.0 | 1316 |
| MS.gene072706.t1 | MTR_2g034720 | 68.692 | 757 | 226 | 5 | 10 | 763 | 7 | 755 | 0.0 | 1087 |
| MS.gene072706.t1 | MTR_4g094285 | 56.977 | 774 | 309 | 9 | 4 | 762 | 8 | 772 | 0.0 | 887 |
| MS.gene072706.t1 | MTR_2g008240 | 57.838 | 740 | 302 | 6 | 29 | 763 | 40 | 774 | 0.0 | 881 |
| MS.gene072706.t1 | MTR_1g106860 | 54.076 | 736 | 326 | 6 | 30 | 754 | 25 | 759 | 0.0 | 810 |
| MS.gene072706.t1 | MTR_5g030860 | 47.254 | 783 | 372 | 13 | 10 | 763 | 11 | 781 | 0.0 | 749 |
| MS.gene072706.t1 | MTR_3g074060 | 47.893 | 783 | 376 | 13 | 1 | 762 | 3 | 774 | 0.0 | 742 |
| MS.gene072706.t1 | MTR_5g062430 | 46.871 | 783 | 385 | 13 | 5 | 762 | 4 | 780 | 0.0 | 728 |
| MS.gene072706.t1 | MTR_5g062320 | 46.046 | 784 | 388 | 14 | 5 | 762 | 4 | 778 | 0.0 | 715 |
| MS.gene072706.t1 | MTR_5g062370 | 46.329 | 790 | 389 | 14 | 5 | 767 | 4 | 785 | 0.0 | 713 |
| MS.gene072706.t1 | MTR_5g062650 | 44.832 | 774 | 399 | 12 | 13 | 762 | 14 | 783 | 0.0 | 696 |
| MS.gene072706.t1 | MTR_5g062370 | 50.000 | 586 | 273 | 7 | 5 | 572 | 4 | 587 | 0.0 | 597 |
| MS.gene072706.t1 | MTR_6g028110 | 25.526 | 666 | 367 | 25 | 29 | 623 | 15 | 622 | 1.21e-39 | 156 |
| MS.gene072706.t1 | MTR_6g028110 | 25.526 | 666 | 367 | 25 | 29 | 623 | 15 | 622 | 1.88e-39 | 156 |
| MS.gene072706.t1 | MTR_6g028120 | 27.709 | 646 | 358 | 27 | 39 | 623 | 5 | 602 | 1.10e-38 | 152 |
| MS.gene072706.t1 | MTR_3g462820 | 26.866 | 603 | 327 | 28 | 50 | 580 | 29 | 589 | 3.18e-38 | 151 |
| MS.gene072706.t1 | MTR_6g028100 | 25.988 | 658 | 354 | 28 | 39 | 623 | 24 | 621 | 1.41e-37 | 149 |
| MS.gene072706.t1 | MTR_6g028090 | 26.635 | 627 | 356 | 25 | 16 | 580 | 11 | 595 | 1.84e-37 | 149 |
| MS.gene072706.t1 | MTR_5g069800 | 26.326 | 528 | 308 | 22 | 87 | 580 | 93 | 573 | 3.54e-33 | 136 |
| MS.gene072706.t1 | MTR_5g069740 | 26.437 | 522 | 299 | 22 | 89 | 580 | 95 | 561 | 5.19e-33 | 135 |
| MS.gene072706.t1 | MTR_7g086030 | 25.421 | 653 | 360 | 30 | 41 | 623 | 2 | 597 | 2.26e-32 | 134 |
| MS.gene072706.t1 | MTR_7g086030 | 25.419 | 657 | 363 | 30 | 37 | 623 | 23 | 622 | 2.69e-32 | 134 |
| MS.gene072706.t1 | MTR_3g079750 | 26.275 | 647 | 350 | 33 | 47 | 623 | 32 | 621 | 7.03e-31 | 129 |
| MS.gene072706.t1 | MTR_2g030000 | 26.220 | 656 | 363 | 32 | 35 | 623 | 22 | 623 | 2.45e-28 | 121 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072706.t1 | AT1G02640 | 72.775 | 764 | 200 | 4 | 11 | 772 | 11 | 768 | 0.0 | 1181 |
| MS.gene072706.t1 | AT5G49360 | 68.725 | 761 | 230 | 7 | 10 | 765 | 16 | 773 | 0.0 | 1071 |
| MS.gene072706.t1 | AT5G64570 | 58.581 | 775 | 304 | 10 | 2 | 763 | 13 | 783 | 0.0 | 899 |
| MS.gene072706.t1 | AT5G09730 | 56.323 | 767 | 322 | 8 | 5 | 762 | 9 | 771 | 0.0 | 874 |
| MS.gene072706.t1 | AT3G19620 | 53.245 | 755 | 337 | 6 | 11 | 754 | 9 | 758 | 0.0 | 837 |
| MS.gene072706.t1 | AT5G64570 | 59.777 | 629 | 241 | 7 | 143 | 763 | 1 | 625 | 0.0 | 754 |
| MS.gene072706.t1 | AT5G64570 | 63.058 | 582 | 205 | 6 | 2 | 575 | 13 | 592 | 0.0 | 736 |
| MS.gene072706.t1 | AT1G78060 | 47.417 | 755 | 373 | 10 | 17 | 755 | 12 | 758 | 0.0 | 733 |
| MS.gene072706.t1 | AT5G10560 | 47.165 | 776 | 365 | 11 | 24 | 763 | 25 | 791 | 0.0 | 733 |
| MS.gene072706.t1 | AT5G09700 | 52.353 | 510 | 222 | 8 | 269 | 762 | 20 | 524 | 2.98e-175 | 513 |
| MS.gene072706.t1 | AT3G47000 | 29.070 | 602 | 316 | 26 | 50 | 580 | 17 | 578 | 2.01e-43 | 167 |
| MS.gene072706.t1 | AT3G47050 | 28.595 | 612 | 330 | 26 | 39 | 582 | 6 | 578 | 4.58e-42 | 163 |
| MS.gene072706.t1 | AT3G47040 | 26.699 | 618 | 344 | 26 | 35 | 582 | 2 | 580 | 6.71e-42 | 162 |
| MS.gene072706.t1 | AT3G47040 | 25.661 | 643 | 344 | 27 | 35 | 582 | 2 | 605 | 2.38e-37 | 149 |
| MS.gene072706.t1 | AT3G47010 | 26.368 | 603 | 349 | 27 | 43 | 582 | 11 | 581 | 3.63e-36 | 145 |
| MS.gene072706.t1 | AT3G47010 | 26.368 | 603 | 348 | 28 | 43 | 582 | 11 | 580 | 9.40e-35 | 141 |
| MS.gene072706.t1 | AT3G47000 | 30.465 | 430 | 222 | 18 | 50 | 423 | 17 | 425 | 9.88e-34 | 135 |
| MS.gene072706.t1 | AT3G47040 | 28.153 | 444 | 244 | 19 | 35 | 423 | 2 | 425 | 1.58e-32 | 132 |
| MS.gene072706.t1 | AT3G62710 | 25.038 | 659 | 371 | 28 | 41 | 622 | 36 | 648 | 1.83e-31 | 131 |
| MS.gene072706.t1 | AT5G04885 | 26.873 | 614 | 340 | 25 | 36 | 580 | 40 | 613 | 1.93e-31 | 131 |
| MS.gene072706.t1 | AT5G04885 | 26.873 | 614 | 340 | 25 | 36 | 580 | 23 | 596 | 2.53e-31 | 131 |
| MS.gene072706.t1 | AT5G04885 | 26.873 | 614 | 340 | 25 | 36 | 580 | 23 | 596 | 2.53e-31 | 131 |
| MS.gene072706.t1 | AT5G20950 | 27.591 | 656 | 354 | 32 | 33 | 623 | 97 | 696 | 1.56e-30 | 129 |
| MS.gene072706.t1 | AT5G20950 | 27.591 | 656 | 354 | 32 | 33 | 623 | 19 | 618 | 1.58e-30 | 128 |
| MS.gene072706.t1 | AT5G20950 | 27.591 | 656 | 354 | 32 | 33 | 623 | 19 | 618 | 1.58e-30 | 128 |
| MS.gene072706.t1 | AT3G47010 | 27.093 | 454 | 254 | 18 | 43 | 440 | 11 | 443 | 4.85e-29 | 121 |
| MS.gene072706.t1 | AT3G47040 | 24.266 | 647 | 356 | 26 | 35 | 582 | 2 | 613 | 1.42e-28 | 122 |
| MS.gene072706.t1 | AT3G47000 | 28.904 | 429 | 241 | 19 | 186 | 580 | 3 | 401 | 5.76e-28 | 118 |
| MS.gene072706.t1 | AT5G20940 | 25.307 | 652 | 362 | 27 | 41 | 622 | 25 | 621 | 2.50e-26 | 115 |
| MS.gene072706.t1 | AT3G47010 | 26.573 | 429 | 259 | 19 | 170 | 582 | 14 | 402 | 6.21e-24 | 105 |
| MS.gene072706.t1 | AT3G47050 | 28.267 | 375 | 203 | 14 | 39 | 362 | 6 | 365 | 8.93e-24 | 104 |
Find 218 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGCTTATGATGTTGATAAT+TGG | 0.194676 | 7.3:+5543613 | MS.gene072706:CDS |
| TGTAGAGATGATAAACAATT+TGG | 0.195462 | 7.3:+5546429 | MS.gene072706:CDS |
| CATCTTGTGGGCCGGTTATC+CGG | 0.203657 | 7.3:+5546680 | MS.gene072706:CDS |
| GAGCAGCAGGGTTAACTTAT+TGG | 0.223733 | 7.3:+5543427 | MS.gene072706:CDS |
| GCTGGTTTACACACATCTTT+AGG | 0.235705 | 7.3:-5545962 | None:intergenic |
| AGAAAACAGTTCGTGGAGTA+TGG | 0.252637 | 7.3:+5545178 | MS.gene072706:CDS |
| ACACATTTGATGTACCATTT+AGG | 0.259080 | 7.3:+5545064 | MS.gene072706:CDS |
| AGATTTGGTGGTTTGTTTCC+TGG | 0.264252 | 7.3:+5540810 | MS.gene072706:CDS |
| ATCTAAGGGGCCAACTGTTT+TGG | 0.269983 | 7.3:+5546596 | MS.gene072706:CDS |
| CTTAGTGTAGTTGATAAATC+TGG | 0.274887 | 7.3:+5547333 | MS.gene072706:CDS |
| AAAGGTGGCAGCTGCATCTA+AGG | 0.276248 | 7.3:+5546581 | MS.gene072706:CDS |
| GCAAGTTTCACATTGCAAAA+TGG | 0.288046 | 7.3:-5540627 | None:intergenic |
| TAGAATCTATATGTTCTTCC+TGG | 0.297720 | 7.3:-5546943 | None:intergenic |
| CACCGAACTGTGGCTGTCAT+TGG | 0.298747 | 7.3:+5546073 | MS.gene072706:CDS |
| GAGCCATCAGCTCAAGCTTA+TGG | 0.309828 | 7.3:+5545929 | MS.gene072706:CDS |
| TCCTTCACACACATCCTAAA+TGG | 0.314863 | 7.3:-5545078 | None:intergenic |
| CCACAGTTCGGTGGCGTTGT+GGG | 0.316217 | 7.3:-5546063 | None:intergenic |
| GCATCAGCAGCAGCTTCTTC+TGG | 0.323818 | 7.3:-5545380 | None:intergenic |
| GCTTCTTTGTGGGAGGCTAT+TGG | 0.324022 | 7.3:+5540879 | MS.gene072706:CDS |
| AAACTTGGCCATGACAAATA+TGG | 0.327012 | 7.3:+5546894 | MS.gene072706:CDS |
| GGTAACCGTGACATCGGAAT+TGG | 0.330315 | 7.3:-5546098 | None:intergenic |
| TGATGTTGCAGGTTTGGATT+TGG | 0.335227 | 7.3:+5545778 | MS.gene072706:intron |
| ACCAGCTTGGCCCGGATAAC+CGG | 0.338671 | 7.3:-5546691 | None:intergenic |
| ATGGAACTAGCCTGCTTTGA+TGG | 0.341997 | 7.3:-5545402 | None:intergenic |
| CTGGTTTACACACATCTTTA+GGG | 0.352334 | 7.3:-5545961 | None:intergenic |
| CCTGGGTACCCTACTTTGCT+TGG | 0.352787 | 7.3:-5546925 | None:intergenic |
| TCTCTGAAAATGTTCACATT+TGG | 0.361641 | 7.3:-5543453 | None:intergenic |
| ATATCTTCCTATTCCTTGTA+AGG | 0.364137 | 7.3:-5546367 | None:intergenic |
| GATGTCACGGTTACCATGAT+TGG | 0.364588 | 7.3:+5546106 | MS.gene072706:CDS |
| CAGGTTTGGATTTGGATTGC+GGG | 0.364768 | 7.3:+5545786 | MS.gene072706:intron |
| ATCTTGTGGGCCGGTTATCC+GGG | 0.367760 | 7.3:+5546681 | MS.gene072706:CDS |
| CTGCATGACGAGCTGCATCT+AGG | 0.386723 | 7.3:-5546458 | None:intergenic |
| TTGAAGGTGCAAATGAGATT+AGG | 0.389022 | 7.3:+5545893 | MS.gene072706:CDS |
| TGAAGGTGCAAATGAGATTA+GGG | 0.389563 | 7.3:+5545894 | MS.gene072706:CDS |
| CGTGGAGTATGGGGTCTTGA+TGG | 0.390124 | 7.3:+5545189 | MS.gene072706:CDS |
| ATATGCTGCTAGTTATGTTA+AGG | 0.395057 | 7.3:+5543533 | MS.gene072706:CDS |
| CATTGGTGATGTTAAGCATT+CGG | 0.398561 | 7.3:+5547392 | MS.gene072706:CDS |
| GTGTTCTCTGCTCCACCTAA+TGG | 0.399346 | 7.3:+5547204 | MS.gene072706:CDS |
| CAGTTTCAGCTTCAATAGAT+TGG | 0.403528 | 7.3:-5546509 | None:intergenic |
| TCCTATTCCTTGTAAGGGGC+TGG | 0.406262 | 7.3:-5546361 | None:intergenic |
| TTCCTTGTCTAGCAGCTTCA+AGG | 0.407600 | 7.3:-5546000 | None:intergenic |
| AAGAATGATCCACGAATTGC+TGG | 0.409564 | 7.3:+5546657 | MS.gene072706:CDS |
| GGACCAGTTGTATATCCATT+TGG | 0.414342 | 7.3:+5546970 | MS.gene072706:CDS |
| TATCTGATTGTGACTCTGTC+GGG | 0.415127 | 7.3:+5545324 | MS.gene072706:CDS |
| GATGCAACTATTCTAGTGAT+AGG | 0.417304 | 7.3:+5546480 | MS.gene072706:CDS |
| GTAGAGATGATAAACAATTT+GGG | 0.420072 | 7.3:+5546430 | MS.gene072706:CDS |
| ACCAGCATAGTTTCCAATCA+TGG | 0.422540 | 7.3:-5546119 | None:intergenic |
| GTGGGTCCTGGTACTAGATT+TGG | 0.428151 | 7.3:+5540795 | MS.gene072706:CDS |
| ATGAGATTAGGGATGTTTGA+TGG | 0.429107 | 7.3:+5545905 | MS.gene072706:CDS |
| AGGGCCAGCTCTTGATGAGC+TGG | 0.430207 | 7.3:-5545980 | None:intergenic |
| ACCGAACTGTGGCTGTCATT+GGG | 0.431191 | 7.3:+5546074 | MS.gene072706:CDS |
| CCCTAGGTGGGGTCGTGGAC+AGG | 0.431303 | 7.3:+5543476 | MS.gene072706:CDS |
| TGCTAAGACTATTCATCAGC+AGG | 0.433829 | 7.3:+5546389 | MS.gene072706:CDS |
| TAGTTATGTTAAGGGGCTAC+AGG | 0.438276 | 7.3:+5543542 | MS.gene072706:CDS |
| ATGTACAATGGAGGAGCAGC+AGG | 0.438394 | 7.3:+5543414 | MS.gene072706:CDS |
| GTTCTTACAATCAAGTGAAT+GGG | 0.439277 | 7.3:+5545124 | MS.gene072706:CDS |
| TGTTCTTACAATCAAGTGAA+TGG | 0.443382 | 7.3:+5545123 | MS.gene072706:CDS |
| TAGTTGATAAATCTGGGATT+AGG | 0.446021 | 7.3:+5547340 | MS.gene072706:CDS |
| AACAAGATCTTGTTGATGCC+CGG | 0.447104 | 7.3:-5546556 | None:intergenic |
| CACGAATTGCTGGCATCTTG+TGG | 0.447512 | 7.3:+5546667 | MS.gene072706:CDS |
| GCCGGTTATCCGGGCCAAGC+TGG | 0.450738 | 7.3:+5546690 | MS.gene072706:CDS |
| TTGGATTGCGGGCCTTTCCT+AGG | 0.450875 | 7.3:+5545797 | MS.gene072706:CDS |
| TATGCTGCTAGTTATGTTAA+GGG | 0.454987 | 7.3:+5543534 | MS.gene072706:CDS |
| TCTAACCCTTTGCCTAGTCT+TGG | 0.457092 | 7.3:-5547286 | None:intergenic |
| ACCTAATGGTGGTAACCGTT+GGG | 0.458138 | 7.3:+5547218 | MS.gene072706:CDS |
| TTGAAGCTGAAACTGTTGAT+AGG | 0.459634 | 7.3:+5546517 | MS.gene072706:CDS |
| ATGAGATCCTTCACTCTCTC+TGG | 0.460902 | 7.3:-5540654 | None:intergenic |
| CGCAGGTGTTGTGGAGGAGG+AGG | 0.462250 | 7.3:-5540551 | None:intergenic |
| TGGTGGTCGGAGGCACTTCA+TGG | 0.462301 | 7.3:+5540762 | MS.gene072706:CDS |
| CACCTAATGGTGGTAACCGT+TGG | 0.466183 | 7.3:+5547217 | MS.gene072706:CDS |
| ACCCACAGTGGTGTCAGTTC+CGG | 0.467398 | 7.3:+5547038 | MS.gene072706:CDS |
| TGGTAATGTGCAGGCTGTCT+CGG | 0.472661 | 7.3:+5543377 | MS.gene072706:intron |
| GCCACAGTTCGGTGGCGTTG+TGG | 0.473664 | 7.3:-5546064 | None:intergenic |
| GCTGCTGATGCCATCAAAGC+AGG | 0.474540 | 7.3:+5545392 | MS.gene072706:CDS |
| ACCCTTTGCCTAGTCTTGGC+AGG | 0.475090 | 7.3:-5547282 | None:intergenic |
| GGCTAGCACAGGGTCTTCAC+CGG | 0.476107 | 7.3:-5543505 | None:intergenic |
| GAGGAGGAGGAGGATGAAGA+GGG | 0.477497 | 7.3:-5540538 | None:intergenic |
| GAGAGAGTGAAGGATCTCAT+TGG | 0.481603 | 7.3:+5540657 | MS.gene072706:CDS |
| GAAAACAGTTCGTGGAGTAT+GGG | 0.482826 | 7.3:+5545179 | MS.gene072706:CDS |
| CTTCCATAAGCTTGAGCTGA+TGG | 0.483514 | 7.3:-5545932 | None:intergenic |
| GAATGAATCGCGTGCGTCGC+AGG | 0.484548 | 7.3:-5540568 | None:intergenic |
| TTAGTGTAGTTGATAAATCT+GGG | 0.485145 | 7.3:+5547334 | MS.gene072706:CDS |
| TCACTTCAAGCAGAAGCACT+TGG | 0.485778 | 7.3:+5547417 | MS.gene072706:CDS |
| TGTCCAAATGGATATACAAC+TGG | 0.486816 | 7.3:-5546973 | None:intergenic |
| CGTCGCAGGTGTTGTGGAGG+AGG | 0.488498 | 7.3:-5540554 | None:intergenic |
| GAGAGGTGAGAGTGAGAATG+TGG | 0.488981 | 7.3:-5540511 | None:intergenic |
| CTCTTAAAGAAAACAGTTCG+TGG | 0.489484 | 7.3:+5545171 | MS.gene072706:CDS |
| TCGCTTTCACTTTAATGCAC+TGG | 0.489838 | 7.3:+5543647 | MS.gene072706:CDS |
| GTAACCGTGACATCGGAATT+GGG | 0.491717 | 7.3:-5546097 | None:intergenic |
| ACGAATTGCTGGCATCTTGT+GGG | 0.492354 | 7.3:+5546668 | MS.gene072706:CDS |
| GCAATGAGACCAAGCAAAGT+AGG | 0.495961 | 7.3:+5546916 | MS.gene072706:CDS |
| AGGCTGTCTCGGACGAAGCA+AGG | 0.500021 | 7.3:+5543388 | MS.gene072706:intron |
| CATCCTGTGTGTGCACTCCT+AGG | 0.502179 | 7.3:-5545814 | None:intergenic |
| TCTCATTGCCATATTTGTCA+TGG | 0.504005 | 7.3:-5546902 | None:intergenic |
| CACAAGATGCCAGCAATTCG+TGG | 0.504195 | 7.3:-5546666 | None:intergenic |
| CAATGGCAGCACCACCAGCT+TGG | 0.504925 | 7.3:-5546704 | None:intergenic |
| AACATCAACGTGAAGGGCAA+TGG | 0.505186 | 7.3:-5547142 | None:intergenic |
| TGCATGACGAGCTGCATCTA+GGG | 0.506258 | 7.3:-5546457 | None:intergenic |
| GGTCCTGGTACTAGATTTGG+TGG | 0.506450 | 7.3:+5540798 | MS.gene072706:CDS |
| GCATATCTACCGGCTAGCAC+AGG | 0.508175 | 7.3:-5543516 | None:intergenic |
| CACTTCAAGCAGAAGCACTT+GGG | 0.508608 | 7.3:+5547418 | MS.gene072706:CDS |
| GCTCAAGCTTATGGAAGATT+AGG | 0.511835 | 7.3:+5545938 | MS.gene072706:CDS |
| GCTCCGGCGGTTCCTAGAGT+TGG | 0.512343 | 7.3:+5540723 | MS.gene072706:CDS |
| TCAACAAGATCTTGTTTCAA+AGG | 0.512917 | 7.3:+5546563 | MS.gene072706:CDS |
| TGACGAGCTGCATCTAGGGC+AGG | 0.513724 | 7.3:-5546453 | None:intergenic |
| GCAGCACCACCAGCTTGGCC+CGG | 0.514349 | 7.3:-5546699 | None:intergenic |
| CGCGTGCGTCGCAGGTGTTG+TGG | 0.515625 | 7.3:-5540560 | None:intergenic |
| GGTGTTTCAAACGTGGGTCC+TGG | 0.516123 | 7.3:+5540783 | MS.gene072706:CDS |
| AGGTGTTGTGGAGGAGGAGG+AGG | 0.516295 | 7.3:-5540548 | None:intergenic |
| CACAGTTCGGTGGCGTTGTG+GGG | 0.518272 | 7.3:-5546062 | None:intergenic |
| GCCCAATGACAGCCACAGTT+CGG | 0.519148 | 7.3:-5546075 | None:intergenic |
| AGAGACCCTAGGTGGGGTCG+TGG | 0.519726 | 7.3:+5543471 | MS.gene072706:CDS |
| TATGTTAATCCATGTCCAAA+TGG | 0.521339 | 7.3:-5546985 | None:intergenic |
| ACCAGCCCCTTACAAGGAAT+AGG | 0.526197 | 7.3:+5546360 | MS.gene072706:CDS |
| GTATCTGATTGTGACTCTGT+CGG | 0.526814 | 7.3:+5545323 | MS.gene072706:CDS |
| AGCAGATGTGAATAATGCTT+TGG | 0.527568 | 7.3:+5545862 | MS.gene072706:CDS |
| ACAAGATCTTGTTGATGCCC+GGG | 0.529316 | 7.3:-5546555 | None:intergenic |
| TCCAAATAAAATGTCAGCAA+TGG | 0.529928 | 7.3:-5546721 | None:intergenic |
| TCCTTGTCTAGCAGCTTCAA+GGG | 0.531276 | 7.3:-5545999 | None:intergenic |
| CTTTGTGGGAGGCTATTGGA+CGG | 0.533160 | 7.3:+5540883 | MS.gene072706:CDS |
| GTGGAGTATGGGGTCTTGAT+GGG | 0.536335 | 7.3:+5545190 | MS.gene072706:CDS |
| TGAAGACTATGTTCTCCCAT+TGG | 0.537870 | 7.3:-5547369 | None:intergenic |
| ACCATGATTGGAAACTATGC+TGG | 0.540156 | 7.3:+5546118 | MS.gene072706:CDS |
| ATCTTCCTATTCCTTGTAAG+GGG | 0.540564 | 7.3:-5546365 | None:intergenic |
| TGCTTTGGTGAATACATTGA+AGG | 0.541919 | 7.3:+5545877 | MS.gene072706:CDS |
| GGTGAAGACCCTGTGCTAGC+CGG | 0.542174 | 7.3:+5543507 | MS.gene072706:CDS |
| GAACTTTCTCAAAAGCAACT+AGG | 0.543425 | 7.3:-5547254 | None:intergenic |
| CCAAGCAAAGTAGGGTACCC+AGG | 0.543790 | 7.3:+5546925 | MS.gene072706:CDS |
| GCAGGTTTGGATTTGGATTG+CGG | 0.544606 | 7.3:+5545785 | MS.gene072706:intron |
| ATTGCTGGCATCTTGTGGGC+CGG | 0.545718 | 7.3:+5546672 | MS.gene072706:CDS |
| TTTGTGGGAGGCTATTGGAC+GGG | 0.548197 | 7.3:+5540884 | MS.gene072706:CDS |
| GGATATACCAGCCCCTTACA+AGG | 0.548943 | 7.3:+5546354 | MS.gene072706:CDS |
| AAGGTGGCAGCTGCATCTAA+GGG | 0.553138 | 7.3:+5546582 | MS.gene072706:CDS |
| AGAATCTATATGTTCTTCCT+GGG | 0.555805 | 7.3:-5546942 | None:intergenic |
| CGGTGGCGTTGTGGGGAGAG+AGG | 0.555922 | 7.3:-5546055 | None:intergenic |
| TTCGCGTGCGATGCAAAAGA+AGG | 0.556579 | 7.3:+5540588 | MS.gene072706:CDS |
| GGCTGTCTCGGACGAAGCAA+GGG | 0.556597 | 7.3:+5543389 | MS.gene072706:intron |
| TATCTTCCTATTCCTTGTAA+GGG | 0.556757 | 7.3:-5546366 | None:intergenic |
| GACATCAAAACCAAAACAGT+TGG | 0.556961 | 7.3:-5546606 | None:intergenic |
| TCTTGTGGGTACCATGTCAC+TGG | 0.557428 | 7.3:-5546862 | None:intergenic |
| GTGGTGTCAGTTCCGGTGCA+TGG | 0.558892 | 7.3:+5547045 | MS.gene072706:CDS |
| CCTGTCCACGACCCCACCTA+GGG | 0.559266 | 7.3:-5543476 | None:intergenic |
| GGTTATCCGGGCCAAGCTGG+TGG | 0.559489 | 7.3:+5546693 | MS.gene072706:CDS |
| TTTGATGTCTGGTGGGCCGG+TGG | 0.560404 | 7.3:+5546620 | MS.gene072706:CDS |
| TCTGTTAGTGAATAATGCTC+CGG | 0.566762 | 7.3:+5540707 | MS.gene072706:CDS |
| GGTTTGGATCAGCACATGTA+GGG | 0.567867 | 7.3:-5545149 | None:intergenic |
| TCCTGCCAAGACTAGGCAAA+GGG | 0.568141 | 7.3:+5547281 | MS.gene072706:CDS |
| CTGGCGTTGATGCATAATGC+TGG | 0.569194 | 7.3:-5545361 | None:intergenic |
| ACCCAACGGTTACCACCATT+AGG | 0.570342 | 7.3:-5547219 | None:intergenic |
| CAATGAGACCAAGCAAAGTA+GGG | 0.570464 | 7.3:+5546917 | MS.gene072706:CDS |
| GCTGAAACTGTTGATAGGAC+TGG | 0.571725 | 7.3:+5546522 | MS.gene072706:CDS |
| AGGTTTGGATCAGCACATGT+AGG | 0.572366 | 7.3:-5545150 | None:intergenic |
| TGGGATTAGGAGAATTCCAA+TGG | 0.575301 | 7.3:+5547353 | MS.gene072706:CDS |
| AACAGACGGTAACAAGTTGA+AGG | 0.575857 | 7.3:+5543566 | MS.gene072706:CDS |
| ACAAGATCTTGTTTCAAAGG+TGG | 0.576713 | 7.3:+5546566 | MS.gene072706:CDS |
| GCCCTTGAAGCTGCTAGACA+AGG | 0.578909 | 7.3:+5545998 | MS.gene072706:CDS |
| ATTCCAACTCTAGGAACCGC+CGG | 0.579099 | 7.3:-5540726 | None:intergenic |
| TTTAGGATGTGTGTGAAGGA+AGG | 0.580245 | 7.3:+5545081 | MS.gene072706:CDS |
| TGTGGGGAGAGAGGCAAAGT+AGG | 0.580629 | 7.3:-5546046 | None:intergenic |
| CTTCATGGTGTTTCAAACGT+GGG | 0.582014 | 7.3:+5540777 | MS.gene072706:CDS |
| AGAGGTGAGAGTGAGAATGT+GGG | 0.583566 | 7.3:-5540510 | None:intergenic |
| TAAACCAGCTCATCAAGAGC+TGG | 0.584124 | 7.3:+5545976 | MS.gene072706:CDS |
| TCCTGTCCACGACCCCACCT+AGG | 0.586492 | 7.3:-5543477 | None:intergenic |
| TTTGCAAAAGTAATGTCCAC+CGG | 0.589334 | 7.3:-5546636 | None:intergenic |
| AGGATGAAGAGGGTAATGAG+AGG | 0.593191 | 7.3:-5540528 | None:intergenic |
| TATGATGTTGATAATTGGAA+TGG | 0.597120 | 7.3:+5543618 | MS.gene072706:CDS |
| GCTAGCACAGGGTCTTCACC+GGG | 0.600172 | 7.3:-5543504 | None:intergenic |
| GGTCGTGGACAGGAAACTCC+CGG | 0.600572 | 7.3:+5543486 | MS.gene072706:CDS |
| TTCATGTTCCTGCCAAGACT+AGG | 0.600707 | 7.3:+5547274 | MS.gene072706:CDS |
| ATAACTAGCAGCATATCTAC+CGG | 0.601845 | 7.3:-5543526 | None:intergenic |
| GTGCGTCGCAGGTGTTGTGG+AGG | 0.602434 | 7.3:-5540557 | None:intergenic |
| GCAGCGGTTGTGATAACTTG+AGG | 0.604040 | 7.3:-5540846 | None:intergenic |
| AAAACAGTTCGTGGAGTATG+GGG | 0.604096 | 7.3:+5545180 | MS.gene072706:CDS |
| CCGGTGCATGGTCATCGACA+TGG | 0.604267 | 7.3:+5547057 | MS.gene072706:CDS |
| CCATGTCGATGACCATGCAC+CGG | 0.604288 | 7.3:-5547057 | None:intergenic |
| GGGATTAGGAGAATTCCAAT+GGG | 0.606939 | 7.3:+5547354 | MS.gene072706:CDS |
| TGGGCCCAATTCCGATGTCA+CGG | 0.607511 | 7.3:+5546093 | MS.gene072706:CDS |
| GTTGTATATCCATTTGGACA+TGG | 0.607536 | 7.3:+5546976 | MS.gene072706:CDS |
| AGTTATGTTAAGGGGCTACA+GGG | 0.608059 | 7.3:+5543543 | MS.gene072706:CDS |
| GAAGCAAGGGCAATGTACAA+TGG | 0.608620 | 7.3:+5543402 | MS.gene072706:CDS |
| CCCACAACGCCACCGAACTG+TGG | 0.609536 | 7.3:+5546063 | MS.gene072706:CDS |
| AACTATTCTAGTGATAGGCT+TGG | 0.609860 | 7.3:+5546485 | MS.gene072706:CDS |
| ACTTCATGGTGTTTCAAACG+TGG | 0.611171 | 7.3:+5540776 | MS.gene072706:CDS |
| TTCCTGCCAAGACTAGGCAA+AGG | 0.611192 | 7.3:+5547280 | MS.gene072706:CDS |
| TTATTTGGAACTGCTAACCC+AGG | 0.613155 | 7.3:+5546735 | MS.gene072706:CDS |
| CATATCTACCGGCTAGCACA+GGG | 0.613295 | 7.3:-5543515 | None:intergenic |
| AATCATGGTAACCGTGACAT+CGG | 0.617822 | 7.3:-5546104 | None:intergenic |
| CAACGGTTACCACCATTAGG+TGG | 0.620197 | 7.3:-5547216 | None:intergenic |
| TGTGTGTGCACTCCTAGGAA+AGG | 0.626000 | 7.3:-5545809 | None:intergenic |
| GCTAAGACTATTCATCAGCA+GGG | 0.626122 | 7.3:+5546390 | MS.gene072706:CDS |
| ATGCTGCTAGTTATGTTAAG+GGG | 0.628737 | 7.3:+5543535 | MS.gene072706:CDS |
| AAACCACCAAATCTAGTACC+AGG | 0.629463 | 7.3:-5540801 | None:intergenic |
| TTCTCTGCTCCACCTAATGG+TGG | 0.638027 | 7.3:+5547207 | MS.gene072706:CDS |
| CAATGACAGCCACAGTTCGG+TGG | 0.639734 | 7.3:-5546072 | None:intergenic |
| TTCTTACAATCAAGTGAATG+GGG | 0.643775 | 7.3:+5545125 | MS.gene072706:CDS |
| AAGCTATGAGTGGTGGTCGG+AGG | 0.643933 | 7.3:+5540752 | MS.gene072706:CDS |
| TGAGGAAAACTAGTAGCACC+AGG | 0.644313 | 7.3:-5540828 | None:intergenic |
| AGAGTGACACATGCAAGATG+TGG | 0.647903 | 7.3:+5547111 | MS.gene072706:CDS |
| AAGGGGCTACAGGGAACAGA+CGG | 0.652426 | 7.3:+5543552 | MS.gene072706:CDS |
| AGAAGCATTAAAAGAAGCAG+CGG | 0.655929 | 7.3:-5540862 | None:intergenic |
| GCAAGGGCAATGTACAATGG+AGG | 0.657866 | 7.3:+5543405 | MS.gene072706:CDS |
| GAAAAGCTATGAGTGGTGGT+CGG | 0.659624 | 7.3:+5540749 | MS.gene072706:CDS |
| ACCATTTAGGATGTGTGTGA+AGG | 0.662576 | 7.3:+5545077 | MS.gene072706:CDS |
| GTTAGTGAATAATGCTCCGG+CGG | 0.666592 | 7.3:+5540710 | MS.gene072706:CDS |
| ATCTGATTGTGACTCTGTCG+GGG | 0.668063 | 7.3:+5545325 | MS.gene072706:CDS |
| AGAACATATAGATTCTACAA+AGG | 0.669440 | 7.3:+5546949 | MS.gene072706:CDS |
| TGCAATACCAGAGAGAGTGA+AGG | 0.671354 | 7.3:+5540647 | MS.gene072706:CDS |
| GGAGAACATAGTCTTCACAT+TGG | 0.674389 | 7.3:+5547375 | MS.gene072706:CDS |
| ACCGGAACTGACACCACTGT+GGG | 0.678978 | 7.3:-5547039 | None:intergenic |
| AGGTGGCAGCTGCATCTAAG+GGG | 0.680934 | 7.3:+5546583 | MS.gene072706:CDS |
| GAGGCAAGCTACCAGTGACA+TGG | 0.683941 | 7.3:+5546851 | MS.gene072706:CDS |
| TGTACAATGGAGGAGCAGCA+GGG | 0.698546 | 7.3:+5543415 | MS.gene072706:CDS |
| AGACGGTAACAAGTTGAAGG+TGG | 0.701591 | 7.3:+5543569 | MS.gene072706:CDS |
| GAATGAAAAGCTATGAGTGG+TGG | 0.706188 | 7.3:+5540745 | MS.gene072706:CDS |
| ATTATCTAGTGCACCCACAG+TGG | 0.712988 | 7.3:+5547026 | MS.gene072706:CDS |
| TTTCCTAGGAGTGCACACAC+AGG | 0.714417 | 7.3:+5545811 | MS.gene072706:CDS |
| TTGGAATGAAAAGCTATGAG+TGG | 0.717605 | 7.3:+5540742 | MS.gene072706:CDS |
| CACCGGAACTGACACCACTG+TGG | 0.731462 | 7.3:-5547040 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 5540504 | 5547455 | 5540504 | ID=MS.gene072706 |
| chr7.3 | mRNA | 5540504 | 5547455 | 5540504 | ID=MS.gene072706.t1;Parent=MS.gene072706 |
| chr7.3 | exon | 5540504 | 5540905 | 5540504 | ID=MS.gene072706.t1.exon1;Parent=MS.gene072706.t1 |
| chr7.3 | CDS | 5540504 | 5540905 | 5540504 | ID=cds.MS.gene072706.t1;Parent=MS.gene072706.t1 |
| chr7.3 | exon | 5543390 | 5543668 | 5543390 | ID=MS.gene072706.t1.exon2;Parent=MS.gene072706.t1 |
| chr7.3 | CDS | 5543390 | 5543668 | 5543390 | ID=cds.MS.gene072706.t1;Parent=MS.gene072706.t1 |
| chr7.3 | exon | 5545042 | 5545211 | 5545042 | ID=MS.gene072706.t1.exon3;Parent=MS.gene072706.t1 |
| chr7.3 | CDS | 5545042 | 5545211 | 5545042 | ID=cds.MS.gene072706.t1;Parent=MS.gene072706.t1 |
| chr7.3 | exon | 5545316 | 5545413 | 5545316 | ID=MS.gene072706.t1.exon4;Parent=MS.gene072706.t1 |
| chr7.3 | CDS | 5545316 | 5545413 | 5545316 | ID=cds.MS.gene072706.t1;Parent=MS.gene072706.t1 |
| chr7.3 | exon | 5545789 | 5546139 | 5545789 | ID=MS.gene072706.t1.exon5;Parent=MS.gene072706.t1 |
| chr7.3 | CDS | 5545789 | 5546139 | 5545789 | ID=cds.MS.gene072706.t1;Parent=MS.gene072706.t1 |
| chr7.3 | exon | 5546343 | 5546756 | 5546343 | ID=MS.gene072706.t1.exon6;Parent=MS.gene072706.t1 |
| chr7.3 | CDS | 5546343 | 5546756 | 5546343 | ID=cds.MS.gene072706.t1;Parent=MS.gene072706.t1 |
| chr7.3 | exon | 5546851 | 5547455 | 5546851 | ID=MS.gene072706.t1.exon7;Parent=MS.gene072706.t1 |
| chr7.3 | CDS | 5546851 | 5547455 | 5546851 | ID=cds.MS.gene072706.t1;Parent=MS.gene072706.t1 |
| Gene Sequence |
| Protein sequence |