AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene71615

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene71615.t1 MTR_1g106860 97.311 781 21 0 1 781 1 781 0.0 1577
MS.gene71615.t1 MTR_2g008240 56.750 763 309 10 5 759 16 765 0.0 870
MS.gene71615.t1 MTR_4g094285 55.599 759 320 10 5 759 19 764 0.0 858
MS.gene71615.t1 MTR_1g087240 54.233 756 333 6 5 759 4 747 0.0 845
MS.gene71615.t1 MTR_7g109390 53.804 736 328 6 25 759 29 753 0.0 827
MS.gene71615.t1 MTR_2g034720 52.209 747 341 5 25 771 28 758 0.0 806
MS.gene71615.t1 MTR_5g062430 49.229 778 365 14 4 759 3 772 0.0 762
MS.gene71615.t1 MTR_5g062320 49.539 759 361 13 24 773 34 779 0.0 754
MS.gene71615.t1 MTR_3g074060 50.000 748 349 10 25 759 31 766 0.0 753
MS.gene71615.t1 MTR_5g030860 49.022 767 366 9 10 759 14 772 0.0 748
MS.gene71615.t1 MTR_5g062370 49.141 757 365 13 15 759 24 772 0.0 748
MS.gene71615.t1 MTR_5g062650 48.524 779 369 15 12 773 21 784 0.0 738
MS.gene71615.t1 MTR_5g062370 52.900 569 253 9 15 573 24 587 0.0 619
MS.gene71615.t1 MTR_6g028120 25.970 670 350 29 32 625 3 602 1.92e-36 146
MS.gene71615.t1 MTR_7g086030 26.547 614 353 27 38 591 4 579 1.83e-34 140
MS.gene71615.t1 MTR_7g086030 26.547 614 353 27 38 591 29 604 2.65e-34 140
MS.gene71615.t1 MTR_6g028090 26.475 661 328 32 47 625 37 621 7.35e-34 138
MS.gene71615.t1 MTR_6g028100 26.101 613 339 25 47 591 37 603 5.42e-33 135
MS.gene71615.t1 MTR_6g028110 25.566 618 336 26 47 591 38 604 3.17e-32 134
MS.gene71615.t1 MTR_6g028110 24.408 676 373 27 26 629 17 626 3.90e-32 133
MS.gene71615.t1 MTR_3g079750 25.786 636 362 29 48 625 38 621 4.41e-32 133
MS.gene71615.t1 MTR_2g030000 25.932 617 333 27 48 591 40 605 2.52e-29 124
MS.gene71615.t1 MTR_3g462820 23.781 677 393 26 11 626 3 617 1.75e-26 115
MS.gene71615.t1 MTR_5g069800 25.234 535 328 23 73 581 85 573 5.84e-26 114
MS.gene71615.t1 MTR_5g069740 25.142 529 324 22 73 581 85 561 4.54e-25 111
MS.gene71615.t1 MTR_7g086010 28.338 367 215 17 73 423 118 452 1.15e-23 105
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene71615.t1 AT3G19620 69.023 778 226 8 1 772 3 771 0.0 1113
MS.gene71615.t1 AT5G64570 56.364 770 305 13 4 759 22 774 0.0 864
MS.gene71615.t1 AT5G09730 53.544 790 328 16 2 773 4 772 0.0 835
MS.gene71615.t1 AT1G02640 52.987 770 334 8 3 763 4 754 0.0 828
MS.gene71615.t1 AT5G49360 52.493 762 350 6 1 759 10 762 0.0 807
MS.gene71615.t1 AT5G10560 48.413 756 355 8 31 759 35 782 0.0 746
MS.gene71615.t1 AT1G78060 48.212 755 377 9 14 761 12 759 0.0 731
MS.gene71615.t1 AT5G64570 60.967 579 216 7 4 578 22 594 0.0 721
MS.gene71615.t1 AT5G64570 56.240 633 249 11 138 759 1 616 0.0 714
MS.gene71615.t1 AT5G09700 49.278 485 224 8 286 760 45 517 5.49e-158 469
MS.gene71615.t1 AT3G47040 25.382 654 369 29 38 628 10 607 8.66e-33 135
MS.gene71615.t1 AT3G47000 25.982 662 349 31 38 625 10 604 9.18e-33 135
MS.gene71615.t1 AT3G62710 27.199 614 347 31 45 624 101 648 1.02e-32 135
MS.gene71615.t1 AT3G47010 25.920 625 371 25 32 600 5 593 1.12e-32 134
MS.gene71615.t1 AT3G47010 25.080 622 379 23 32 600 5 592 1.41e-30 128
MS.gene71615.t1 AT5G20950 25.155 644 355 28 48 625 36 618 1.72e-30 128
MS.gene71615.t1 AT5G20950 25.155 644 355 28 48 625 36 618 1.72e-30 128
MS.gene71615.t1 AT5G20950 25.155 644 355 28 48 625 114 696 2.43e-30 128
MS.gene71615.t1 AT3G47050 25.817 612 365 24 35 591 7 584 1.99e-29 124
MS.gene71615.t1 AT5G04885 26.316 551 323 24 72 592 108 605 2.19e-29 125
MS.gene71615.t1 AT5G04885 26.316 551 323 24 72 592 108 605 2.19e-29 125
MS.gene71615.t1 AT3G47040 24.853 680 365 31 38 628 10 632 2.28e-29 124
MS.gene71615.t1 AT5G04885 26.316 551 323 24 72 592 125 622 2.29e-29 125
MS.gene71615.t1 AT3G47000 27.851 456 231 18 32 423 4 425 1.26e-27 117
MS.gene71615.t1 AT3G47040 27.169 438 245 18 38 423 10 425 2.37e-26 113
MS.gene71615.t1 AT5G20940 26.591 613 331 31 48 591 42 604 4.64e-26 114
MS.gene71615.t1 AT3G47010 27.679 448 242 19 32 423 5 426 6.86e-25 109
MS.gene71615.t1 AT3G47010 25.240 416 270 16 199 600 26 414 1.26e-20 95.9
MS.gene71615.t1 AT3G47000 25.212 472 275 25 183 625 5 427 3.28e-18 88.6
MS.gene71615.t1 AT3G47050 25.600 375 221 13 35 365 7 367 1.49e-17 85.9

Find 171 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTGGCTGGTTTGACATTT+TGG 0.130488 1.4:-82208552 MS.gene71615:CDS
GCAACATAGGAGGGATATTA+TGG 0.220056 1.4:-82206629 MS.gene71615:CDS
TGAAACATTATGGTACAAAA+TGG 0.221947 1.4:-82208617 MS.gene71615:CDS
CTGCTTATGATGTTGATAAT+TGG 0.227264 1.4:-82208348 MS.gene71615:CDS
GGGAAATCCCTCTATGAATT+TGG 0.249033 1.4:-82205843 MS.gene71615:CDS
GTGTCATGTGCTCATATAAT+AGG 0.254476 1.4:-82208048 MS.gene71615:CDS
GATTGTGGATACCATGTAAA+TGG 0.264876 1.4:+82205954 None:intergenic
TCCAACACACAGCTCTTAAA+TGG 0.278527 1.4:+82208085 None:intergenic
TTATTACCTTAGCATCAAAA+TGG 0.295146 1.4:+82208308 None:intergenic
CAAAGAAGCCAAGTCTCATT+AGG 0.298010 1.4:+82207192 None:intergenic
AGGGAAATTTCTACTGCTAT+TGG 0.303148 1.4:+82205890 None:intergenic
TGTCAAATTCAAACAACTTA+TGG 0.308883 1.4:+82205686 None:intergenic
CCTTAACTGCTGCAGCAAAA+AGG 0.324235 1.4:+82206853 None:intergenic
TAAAACCTGTATGTTCTTCC+AGG 0.325928 1.4:+82205870 None:intergenic
GCCCTTCTGCTTCTATAGAT+TGG 0.325933 1.4:+82206787 None:intergenic
GATAGTGAAGTGTTGCAAAA+TGG 0.335511 1.4:+82208868 None:intergenic
AGCCTTGAAATGCCGGTAGA+AGG 0.350533 1.4:+82208775 None:intergenic
GATTGGACAGCACACTATTC+TGG 0.361517 1.4:-82205433 MS.gene71615:CDS
AGAGGCCAGTGGGGTCTAGA+TGG 0.363411 1.4:-82207974 MS.gene71615:CDS
GCAAGAGCCACTGCATCTTC+AGG 0.368484 1.4:+82207448 None:intergenic
GACTAAAATCAATGTTCCTT+TGG 0.370514 1.4:+82206698 None:intergenic
TTACAAATGGAGAAGCATTA+AGG 0.375714 1.4:-82205368 MS.gene71615:CDS
AGCTATGTACAATGTGGATT+TGG 0.386393 1.4:-82208569 MS.gene71615:CDS
TTCGGGATCATTATGGTAGA+AGG 0.387052 1.4:+82205774 None:intergenic
AGAGTTAACTTGACATTGCC+TGG 0.387425 1.4:-82206759 MS.gene71615:CDS
TTAGTGAAAGAAATATCAAT+TGG 0.388314 1.4:+82206660 None:intergenic
GATGCAGTGGTGTTGGTTGT+TGG 0.395186 1.4:-82206816 MS.gene71615:CDS
TTTGCAAATGGAAGTGACTT+TGG 0.397416 1.4:+82207164 None:intergenic
GTTCCACTGAAACAATTGAT+AGG 0.400095 1.4:-82205564 MS.gene71615:CDS
TTGCAAATGGAAGTGACTTT+GGG 0.402569 1.4:+82207165 None:intergenic
AACTCCAGGGGAAGATCCTT+TGG 0.404077 1.4:-82208479 MS.gene71615:CDS
TGCTAAAGATGATAGGCTTA+AGG 0.408182 1.4:-82208395 MS.gene71615:CDS
GCCATAGCACAAGTAATATT+CGG 0.408185 1.4:-82206576 MS.gene71615:CDS
CCACTCACCACCTCTGAACT+TGG 0.416144 1.4:+82205588 None:intergenic
CTCATGTTCATGTCTGTCAT+TGG 0.420175 1.4:+82205915 None:intergenic
ACAAGCTTCTCTTGAAATCC+AGG 0.424917 1.4:+82206741 None:intergenic
TCTACCGGCATTTCAAGGCT+TGG 0.426574 1.4:-82208772 MS.gene71615:CDS
CTCTGCTGATGCAGTGGTGT+TGG 0.432899 1.4:-82206823 MS.gene71615:CDS
ACCCTTCTACCGGCATTTCA+AGG 0.433066 1.4:-82208777 MS.gene71615:CDS
ACTTCTGTAGTCCTTGTAAA+GGG 0.438650 1.4:+82206934 None:intergenic
TACTTCTGTAGTCCTTGTAA+AGG 0.441252 1.4:+82206933 None:intergenic
AAAGAGCACAAGTTAAGGTT+GGG 0.443226 1.4:-82205536 MS.gene71615:CDS
CACCACATTGATATTACAAA+TGG 0.443706 1.4:-82205381 MS.gene71615:CDS
CACTAAAGAAAATCAGCAAT+TGG 0.455452 1.4:-82207120 MS.gene71615:CDS
ATTTGAAAGAGCACAAGTTA+AGG 0.457325 1.4:-82205541 MS.gene71615:CDS
GAAAGAGCACAAGTTAAGGT+TGG 0.460343 1.4:-82205537 MS.gene71615:CDS
AAGCAAGTGCTAAAGATGAT+AGG 0.460961 1.4:-82208402 MS.gene71615:CDS
ACTGTGGTGGCATTTGCATT+CGG 0.462873 1.4:+82206999 None:intergenic
TGCTCATATAATAGGGTGAA+TGG 0.462881 1.4:-82208040 MS.gene71615:CDS
TTGGTGTTCCTGCTTATGAA+TGG 0.463212 1.4:-82208753 MS.gene71615:CDS
ATTACACCTTGGAGAAGGTC+TGG 0.463689 1.4:+82207998 None:intergenic
GAAACATTATGGTACAAAAT+GGG 0.466706 1.4:-82208616 MS.gene71615:CDS
AGTGGTGTTGGTTGTTGGAT+TGG 0.468220 1.4:-82206811 MS.gene71615:CDS
GGTAAAAGAAAGTTGGTGAT+TGG 0.468406 1.4:-82205450 MS.gene71615:CDS
ATCTATAGAAGCAGAAGGGC+TGG 0.468944 1.4:-82206784 MS.gene71615:CDS
AATCCTATCAATTGTTTCAG+TGG 0.470201 1.4:+82205561 None:intergenic
TGCAGCCTCTGCTGATGCAG+TGG 0.470889 1.4:-82206829 MS.gene71615:CDS
TGTCATGTGCTCATATAATA+GGG 0.473992 1.4:-82208047 MS.gene71615:CDS
TCCCTCTATGAATTTGGCTA+TGG 0.484680 1.4:-82205837 MS.gene71615:CDS
ATTTAAGAGCTGTGTGTTGG+AGG 0.484967 1.4:-82208083 MS.gene71615:CDS
TGACACTAAGTCCTTGGCTC+TGG 0.485207 1.4:+82208837 None:intergenic
TCACTTCCATTTGCAAACCT+TGG 0.486006 1.4:-82207158 MS.gene71615:CDS
ATTTCCCTGGAAGAACATAC+AGG 0.486697 1.4:-82205875 MS.gene71615:CDS
CTGCTGTCGAAACGCGTCCC+TGG 0.488388 1.4:+82208694 None:intergenic
CGTTATTCAAGCCCTTTACA+AGG 0.490137 1.4:-82206945 MS.gene71615:CDS
AACACCAAGCCTTGAAATGC+CGG 0.491966 1.4:+82208768 None:intergenic
TGAATAACGGCATGGTATGC+CGG 0.494331 1.4:+82206959 None:intergenic
TATGCTGTAAATTATGTTCG+TGG 0.495123 1.4:-82208445 MS.gene71615:CDS
CAACATAGGAGGGATATTAT+GGG 0.496768 1.4:-82206628 MS.gene71615:CDS
ATTGTGGATACCATGTAAAT+GGG 0.498218 1.4:+82205955 None:intergenic
CAGGGACGCGTTTCGACAGC+AGG 0.500208 1.4:-82208693 MS.gene71615:CDS
ACTACAGAAGTACATTTCTT+CGG 0.503346 1.4:-82206922 MS.gene71615:CDS
TAGTGAAAGAAATATCAATT+GGG 0.504026 1.4:+82206661 None:intergenic
TCCATTTAAGAGCTGTGTGT+TGG 0.505176 1.4:-82208086 MS.gene71615:CDS
CGTTTCGACAGCAGGGTACC+AGG 0.507269 1.4:-82208685 MS.gene71615:CDS
ATGTACAATGTGGATTTGGC+TGG 0.507340 1.4:-82208565 MS.gene71615:CDS
GATGGTCCAAGGTTTGCAAA+TGG 0.509359 1.4:+82207152 None:intergenic
GCCTTGAAATGCCGGTAGAA+GGG 0.510160 1.4:+82208776 None:intergenic
ATATTATGGGTAGGTTATCC+TGG 0.512772 1.4:-82206615 MS.gene71615:CDS
ACTAAAAGTATAAGCAACAT+AGG 0.518647 1.4:-82206642 MS.gene71615:CDS
GCAGGTGACAAAGCAAGACT+TGG 0.520570 1.4:-82208125 MS.gene71615:intron
TCTTTAGTGCATACATCAGA+TGG 0.520982 1.4:+82207134 None:intergenic
CTTGTAAAGGGCTTGAATAA+CGG 0.521302 1.4:+82206946 None:intergenic
TGGTGGTCAGAGGCACTTCA+TGG 0.521560 1.4:-82208733 MS.gene71615:CDS
GGTGACAAAGCAAGACTTGG+AGG 0.523632 1.4:-82208122 MS.gene71615:CDS
TCAAGGAAGATATTATTAAG+TGG 0.524739 1.4:+82205732 None:intergenic
TATCAATTGCTTGATCATCA+AGG 0.526561 1.4:+82205715 None:intergenic
GTGGCTCTTGCACTGAAAGC+AGG 0.529634 1.4:-82207436 MS.gene71615:intron
ATATTCGGAGACTATAACCC+AGG 0.530786 1.4:-82206561 MS.gene71615:intron
CTTCATGGTGTCTCAAATGT+AGG 0.539417 1.4:-82208718 MS.gene71615:CDS
GGGCGTGGACAAGAAACTCC+AGG 0.541036 1.4:-82208493 MS.gene71615:CDS
TTTAAGAGCTGTGTGTTGGA+GGG 0.541333 1.4:-82208082 MS.gene71615:CDS
GTTCGTGGACTACAAGAAGT+TGG 0.541602 1.4:-82208430 MS.gene71615:CDS
ACCACATGAGATCCGTCAAA+AGG 0.541648 1.4:+82205630 None:intergenic
TCCGAATATTACTTGTGCTA+TGG 0.542116 1.4:+82206575 None:intergenic
AAAAGTATAAGCAACATAGG+AGG 0.545184 1.4:-82206639 MS.gene71615:CDS
ATAATTGGAAAGGCGTTGAT+CGG 0.552315 1.4:-82208333 MS.gene71615:CDS
GGACAGCACACTATTCTGGT+TGG 0.552636 1.4:-82205429 MS.gene71615:CDS
TTTACTAATTAGATTCACTC+AGG 0.554229 1.4:+82205345 None:intergenic
ATCCATAGCCAAATTCATAG+AGG 0.557580 1.4:+82205835 None:intergenic
TAAGCGTGACACTAAGTCCT+TGG 0.559465 1.4:+82208831 None:intergenic
TGCTATGTGGGTGGAGAATG+TGG 0.559491 1.4:+82205803 None:intergenic
CTCTGATTACACCTTGGAGA+AGG 0.562519 1.4:+82207993 None:intergenic
ATCTATTGTAGACCAAGCCT+TGG 0.563804 1.4:-82207231 MS.gene71615:CDS
GAGGCCAGTGGGGTCTAGAT+GGG 0.564760 1.4:-82207973 MS.gene71615:intron
GCAGCTGATAGTATCACTGC+TGG 0.566392 1.4:+82208649 None:intergenic
AAAACCTGTATGTTCTTCCA+GGG 0.569628 1.4:+82205871 None:intergenic
CTCACCACCTCTGAACTTGG+TGG 0.569744 1.4:+82205591 None:intergenic
TCTGACCACCATTCATAAGC+AGG 0.570631 1.4:+82208745 None:intergenic
TGTTTCAGACTGTGATTCAG+TGG 0.570986 1.4:-82207506 MS.gene71615:CDS
GCTCTAGAAGCTGCGAAGCA+AGG 0.571329 1.4:-82207098 MS.gene71615:CDS
GGTGTCTCAAATGTAGGACC+AGG 0.572126 1.4:-82208712 MS.gene71615:CDS
GTGTTCCTGCTTATGAATGG+TGG 0.572399 1.4:-82208750 MS.gene71615:CDS
TGCATACATCAGATGGTCCA+AGG 0.572554 1.4:+82207141 None:intergenic
AGGTGTAATCAGAGGCCAGT+GGG 0.573573 1.4:-82207984 MS.gene71615:CDS
GTAGGTTATCCTGGTCAAGA+TGG 0.574821 1.4:-82206606 MS.gene71615:CDS
TACATAGTCCTAATGAGACT+TGG 0.576502 1.4:-82207200 MS.gene71615:CDS
TCCATAGCCAAATTCATAGA+GGG 0.577492 1.4:+82205836 None:intergenic
AATAGCAGTAGAAATTTCCC+TGG 0.578141 1.4:-82205888 MS.gene71615:CDS
TTTGGAGCCACCAAGTTCAG+AGG 0.581797 1.4:-82205598 MS.gene71615:CDS
CAAATTCAAACAACTTATGG+TGG 0.582768 1.4:+82205689 None:intergenic
GTTATGATTAGTAACTATGC+CGG 0.583450 1.4:-82206978 MS.gene71615:CDS
TGTAGTTGTATACCAAGGCT+TGG 0.586966 1.4:+82207219 None:intergenic
GCATTTCCTCCATCTTGACC+AGG 0.588584 1.4:+82206597 None:intergenic
GTGGTAGGTCCCCATTTACA+TGG 0.594929 1.4:-82205965 MS.gene71615:CDS
CAACTAGTAAACCCTTCTAC+CGG 0.596049 1.4:-82208787 MS.gene71615:CDS
ACAACCAAAGGATCTTCCCC+TGG 0.596108 1.4:+82208475 None:intergenic
TAGTGATGGTAAAAGAAAGT+TGG 0.596133 1.4:-82205457 MS.gene71615:CDS
GGCGTGGACAAGAAACTCCA+GGG 0.596923 1.4:-82208492 MS.gene71615:CDS
AAAGTATAAGCAACATAGGA+GGG 0.598306 1.4:-82206638 MS.gene71615:CDS
GACCAATCTATAGAAGCAGA+AGG 0.600841 1.4:-82206789 MS.gene71615:CDS
CTAAGTAATGTTGATAGTGA+TGG 0.602583 1.4:-82205471 MS.gene71615:CDS
GGAGCCACCAAGTTCAGAGG+TGG 0.603381 1.4:-82205595 MS.gene71615:CDS
TGCTTATGAATGGTGGTCAG+AGG 0.605760 1.4:-82208743 MS.gene71615:CDS
ATCTTATGAAACCAGAGCCA+AGG 0.606136 1.4:-82208848 MS.gene71615:CDS
TATGATGTTGATAATTGGAA+AGG 0.616039 1.4:-82208343 MS.gene71615:CDS
AGGTCTGGATCAGCACATGT+AGG 0.621412 1.4:+82208013 None:intergenic
AAAGACTCCTGAAGATGCAG+TGG 0.622680 1.4:-82207455 MS.gene71615:CDS
GTGATTGGTGTGAAGAACAA+TGG 0.624345 1.4:-82205654 MS.gene71615:CDS
CCAAGTTCAGAGGTGGTGAG+TGG 0.628834 1.4:-82205588 MS.gene71615:CDS
GGTTATCCTGGTCAAGATGG+AGG 0.630089 1.4:-82206603 MS.gene71615:CDS
TCTTCGGTAACTTATGCGCG+TGG 0.631464 1.4:-82206906 MS.gene71615:CDS
AGAGAAGCTTGTGAAAGATG+CGG 0.633713 1.4:-82206730 MS.gene71615:CDS
CTCCATTTGTAATATCAATG+TGG 0.634610 1.4:+82205379 None:intergenic
AGGAGCAGATGCTATGTGGG+TGG 0.634841 1.4:+82205794 None:intergenic
ACTTGATCAACATATGATTG+TGG 0.635008 1.4:+82205939 None:intergenic
GTTACTAATCATAACTGTGG+TGG 0.637990 1.4:+82206986 None:intergenic
AGAAGGAGCAGATGCTATGT+GGG 0.640811 1.4:+82205791 None:intergenic
ACTGGCCTCTGATTACACCT+TGG 0.640961 1.4:+82207987 None:intergenic
CTTCTCCAAGGTGTAATCAG+AGG 0.642134 1.4:-82207992 MS.gene71615:CDS
TAGAAGGAGCAGATGCTATG+TGG 0.642253 1.4:+82205790 None:intergenic
GATGCGGCTTCTGCTACCAA+AGG 0.645797 1.4:-82206714 MS.gene71615:CDS
CAACACCACTGCATCAGCAG+AGG 0.646395 1.4:+82206824 None:intergenic
CAAACCCATCTAGACCCCAC+TGG 0.647961 1.4:+82207969 None:intergenic
GCTGGAAAGCTAGTAGCACC+TGG 0.652192 1.4:+82208667 None:intergenic
GACTATGTAGTTGTATACCA+AGG 0.652901 1.4:+82207214 None:intergenic
AACACACAGCTCTTAAATGG+AGG 0.654259 1.4:+82208088 None:intergenic
GCTGATCCAGACCTTCTCCA+AGG 0.658385 1.4:-82208004 MS.gene71615:CDS
ATAGGAGGGATATTATGGGT+AGG 0.660257 1.4:-82206624 MS.gene71615:CDS
ACCAATCTATAGAAGCAGAA+GGG 0.660435 1.4:-82206788 MS.gene71615:CDS
AAAGGGCTTGAATAACGGCA+TGG 0.670068 1.4:+82206951 None:intergenic
AGCTAGAGCTATGTACAATG+TGG 0.670531 1.4:-82208575 MS.gene71615:CDS
ATAGTTACTAATCATAACTG+TGG 0.678359 1.4:+82206983 None:intergenic
AAGGTGTAATCAGAGGCCAG+TGG 0.694576 1.4:-82207985 MS.gene71615:CDS
GCATATCTAGAAACAACCAA+AGG 0.695865 1.4:+82208463 None:intergenic
GCGTGGACAAGAAACTCCAG+GGG 0.698903 1.4:-82208491 MS.gene71615:CDS
GTGTCTCAAATGTAGGACCA+GGG 0.699223 1.4:-82208711 MS.gene71615:CDS
AGGGACGCGTTTCGACAGCA+GGG 0.700672 1.4:-82208692 MS.gene71615:CDS
GGTGTAATCAGAGGCCAGTG+GGG 0.715668 1.4:-82207983 MS.gene71615:CDS
TTGTGGATACCATGTAAATG+GGG 0.746412 1.4:+82205956 None:intergenic
GCAGGTTTAAACATGAACTG+CGG 0.750864 1.4:-82207308 MS.gene71615:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAACTAAGATAAAAAATT+TGG - chr1.4:82207302-82207321 MS.gene71615:CDS 10.0%
!! AAAATAAAAGTTTATGTGTT+TGG + chr1.4:82208270-82208289 None:intergenic 15.0%
!! AAATATGTAAAGATAAATGT+AGG + chr1.4:82207828-82207847 None:intergenic 15.0%
!!! ACAGTGAAAATTTTATTTAT+AGG - chr1.4:82208348-82208367 MS.gene71615:CDS 15.0%
!!! GCTATTATAAATTGATAATT+AGG + chr1.4:82208051-82208070 None:intergenic 15.0%
!!! TACAATTTGATTTTATGTAA+AGG - chr1.4:82208117-82208136 MS.gene71615:CDS 15.0%
!!! TTTATCTTAGTTTTTGATAA+AGG + chr1.4:82207297-82207316 None:intergenic 15.0%
!! AAAAAATCAAATGATTGCTT+AGG + chr1.4:82206400-82206419 None:intergenic 20.0%
!! AAAAATCAAATGATTGCTTA+GGG + chr1.4:82206399-82206418 None:intergenic 20.0%
!! GTAAAAATATTTAACACGTT+CGG + chr1.4:82206142-82206161 None:intergenic 20.0%
!! TAGTGAAAGAAATATCAATT+GGG + chr1.4:82207677-82207696 None:intergenic 20.0%
!! TATTGGATTATTAAATGGTA+TGG - chr1.4:82206991-82207010 MS.gene71615:CDS 20.0%
!! TCAACTAAATCCTATATTTA+GGG + chr1.4:82206510-82206529 None:intergenic 20.0%
!! TCTATCATAGTATTCATTAA+AGG - chr1.4:82206624-82206643 MS.gene71615:CDS 20.0%
!! TTAGTGAAAGAAATATCAAT+TGG + chr1.4:82207678-82207697 None:intergenic 20.0%
!! TTGACTAAATTACTAGAATT+TGG - chr1.4:82206526-82206545 MS.gene71615:intron 20.0%
!! TTGATTCATAAAAATCAGTT+TGG - chr1.4:82208084-82208103 MS.gene71615:CDS 20.0%
!!! AAATTTTATTTATAGGTGGT+AGG - chr1.4:82208355-82208374 MS.gene71615:CDS 20.0%
!!! AACATTGATTTTAGTCATAA+TGG - chr1.4:82207644-82207663 MS.gene71615:intron 20.0%
!!! AATTAGTAGTATTGTTTTAC+AGG - chr1.4:82206581-82206600 MS.gene71615:CDS 20.0%
!!! ATGTTTTTTTTAACTGTCAT+AGG + chr1.4:82207856-82207875 None:intergenic 20.0%
!!! ATTATTAAGTGGTTTTGAAA+TGG + chr1.4:82208595-82208614 None:intergenic 20.0%
!!! CAAAAAAGTATAAGATATCA+GGG + chr1.4:82206798-82206817 None:intergenic 20.0%
!!! CTAGTTTTAATGAAACATTA+TGG - chr1.4:82205708-82205727 MS.gene71615:CDS 20.0%
!!! GTGAAAATTTTATTTATAGG+TGG - chr1.4:82208351-82208370 MS.gene71615:CDS 20.0%
!!! TCAAAAAAGTATAAGATATC+AGG + chr1.4:82206799-82206818 None:intergenic 20.0%
! AATAAAGTTATGACTGGTAT+TGG - chr1.4:82206974-82206993 MS.gene71615:CDS 25.0%
! ACTGCAAAAAAAATTCTGAT+TGG - chr1.4:82206946-82206965 MS.gene71615:CDS 25.0%
! ATAAAAAATTTGGCTGTGAT+TGG - chr1.4:82207312-82207331 MS.gene71615:intron 25.0%
! ATAGTTACTAATCATAACTG+TGG + chr1.4:82207355-82207374 None:intergenic 25.0%
! ATTACTAGAATTTGGAAAGT+TGG - chr1.4:82206534-82206553 MS.gene71615:intron 25.0%
! CTGCAAAAAAAATTCTGATT+GGG - chr1.4:82206947-82206966 MS.gene71615:CDS 25.0%
! GAAACATTATGGTACAAAAT+GGG - chr1.4:82205719-82205738 MS.gene71615:CDS 25.0%
! GTCAACTAAATCCTATATTT+AGG + chr1.4:82206511-82206530 None:intergenic 25.0%
! TAGTTTATCATAGCTATCAT+AGG + chr1.4:82206473-82206492 None:intergenic 25.0%
! TATCACCATGTAGATATTTA+CGG - chr1.4:82206179-82206198 MS.gene71615:intron 25.0%
! TCAAGGAAGATATTATTAAG+TGG + chr1.4:82208606-82208625 None:intergenic 25.0%
! TGAAACATTATGGTACAAAA+TGG - chr1.4:82205718-82205737 MS.gene71615:CDS 25.0%
! TGTCAAATTCAAACAACTTA+TGG + chr1.4:82208652-82208671 None:intergenic 25.0%
! TTATGTGTTTGGTATAAACT+TGG + chr1.4:82208259-82208278 None:intergenic 25.0%
! TTATTACCTTAGCATCAAAA+TGG + chr1.4:82206030-82206049 None:intergenic 25.0%
! TTCATTAAAGGTTGTAGAAA+AGG - chr1.4:82206636-82206655 MS.gene71615:CDS 25.0%
! TTTAATAGAAAGCTATACCT+GGG + chr1.4:82207794-82207813 None:intergenic 25.0%
!! ACTAAAAGTATAAGCAACAT+AGG - chr1.4:82207693-82207712 MS.gene71615:intron 25.0%
!! ACTGGTATTGGATTATTAAA+TGG - chr1.4:82206986-82207005 MS.gene71615:CDS 25.0%
!! GATTTTATGTAAAGGTAGTT+CGG - chr1.4:82208125-82208144 MS.gene71615:intron 25.0%
!! TGTTTATATTTGAGACCATA+AGG + chr1.4:82208216-82208235 None:intergenic 25.0%
!! TTATATTTGAGACTTGAGAA+CGG - chr1.4:82208292-82208311 MS.gene71615:intron 25.0%
!!! TATGATGTTGATAATTGGAA+AGG - chr1.4:82205992-82206011 MS.gene71615:intron 25.0%
!!! TTTGAAATGGATGTGTTTTT+CGG + chr1.4:82208582-82208601 None:intergenic 25.0%
AAAGTATAAGCAACATAGGA+GGG - chr1.4:82207697-82207716 MS.gene71615:intron 30.0%
AACAACTCTAACATTCGATT+TGG - chr1.4:82207998-82208017 MS.gene71615:CDS 30.0%
AATCCTATCAATTGTTTCAG+TGG + chr1.4:82208777-82208796 None:intergenic 30.0%
AATCTCCGTAAATATCTACA+TGG + chr1.4:82206187-82206206 None:intergenic 30.0%
ACGCAGTTGAAAATTTGAAA+CGG - chr1.4:82206700-82206719 MS.gene71615:CDS 30.0%
ACTTGATCAACATATGATTG+TGG + chr1.4:82208399-82208418 None:intergenic 30.0%
ATTGTGGATACCATGTAAAT+GGG + chr1.4:82208383-82208402 None:intergenic 30.0%
CAAACTTAACTAAACCAATC+CGG - chr1.4:82207927-82207946 MS.gene71615:intron 30.0%
CAAATTCAAACAACTTATGG+TGG + chr1.4:82208649-82208668 None:intergenic 30.0%
CACCACATTGATATTACAAA+TGG - chr1.4:82208954-82208973 MS.gene71615:CDS 30.0%
CACTAAAGAAAATCAGCAAT+TGG - chr1.4:82207215-82207234 MS.gene71615:CDS 30.0%
CATAGCTATCATAGGTATAA+AGG + chr1.4:82206465-82206484 None:intergenic 30.0%
CTATCTTAGTCCCTAAATAT+AGG - chr1.4:82206497-82206516 MS.gene71615:intron 30.0%
CTCCATTTGTAATATCAATG+TGG + chr1.4:82208959-82208978 None:intergenic 30.0%
GAAACGGTGTCTTATAAAAA+GGG - chr1.4:82206716-82206735 MS.gene71615:CDS 30.0%
GACTAAAATCAATGTTCCTT+TGG + chr1.4:82207640-82207659 None:intergenic 30.0%
GGAAGAAATAAAGTTATGAC+TGG - chr1.4:82206968-82206987 MS.gene71615:CDS 30.0%
GTGTCTTATAAAAAGGGATA+AGG - chr1.4:82206722-82206741 MS.gene71615:CDS 30.0%
GTTATGATTAGTAACTATGC+CGG - chr1.4:82207357-82207376 MS.gene71615:intron 30.0%
GTTTAATAGAAAGCTATACC+TGG + chr1.4:82207795-82207814 None:intergenic 30.0%
TAATGTTACCACATACCTTA+TGG - chr1.4:82208198-82208217 MS.gene71615:intron 30.0%
TAGTGATGGTAAAAGAAAGT+TGG - chr1.4:82208878-82208897 MS.gene71615:CDS 30.0%
TATCAATTGCTTGATCATCA+AGG + chr1.4:82208623-82208642 None:intergenic 30.0%
TATGCTGTAAATTATGTTCG+TGG - chr1.4:82205890-82205909 MS.gene71615:CDS 30.0%
TCTACATGGTGATATATGAT+TGG + chr1.4:82206173-82206192 None:intergenic 30.0%
TGAAACGGTGTCTTATAAAA+AGG - chr1.4:82206715-82206734 MS.gene71615:CDS 30.0%
TGGCAGCATATTAAATTTCA+TGG + chr1.4:82206068-82206087 None:intergenic 30.0%
TGTCATGTGCTCATATAATA+GGG - chr1.4:82206288-82206307 MS.gene71615:intron 30.0%
! AAAAGTATAAGCAACATAGG+AGG - chr1.4:82207696-82207715 MS.gene71615:intron 30.0%
! ACTACAGAAGTACATTTCTT+CGG - chr1.4:82207413-82207432 MS.gene71615:intron 30.0%
! AGAACATACAGGTTTTACAA+TGG - chr1.4:82208471-82208490 MS.gene71615:CDS 30.0%
! ATTTGAAAGAGCACAAGTTA+AGG - chr1.4:82208794-82208813 MS.gene71615:CDS 30.0%
! GAACATACAGGTTTTACAAT+GGG - chr1.4:82208472-82208491 MS.gene71615:CDS 30.0%
! GTTTTGCTTGAAAACAACAA+AGG - chr1.4:82207264-82207283 MS.gene71615:CDS 30.0%
! TCCAATTGCTTATGCATTTT+TGG + chr1.4:82206088-82206107 None:intergenic 30.0%
! TTAAGTTAGCTTGACATGTA+AGG + chr1.4:82206424-82206443 None:intergenic 30.0%
! TTGAAATGGATGTGTTTTTC+GGG + chr1.4:82208581-82208600 None:intergenic 30.0%
!! CTAAGTAATGTTGATAGTGA+TGG - chr1.4:82208864-82208883 MS.gene71615:CDS 30.0%
!! CTGCTTATGATGTTGATAAT+TGG - chr1.4:82205987-82206006 MS.gene71615:intron 30.0%
!! GCATGTTTTTGACTAGTAAT+TGG + chr1.4:82205413-82205432 None:intergenic 30.0%
!! TTACAAATGGAGAAGCATTA+AGG - chr1.4:82208967-82208986 MS.gene71615:CDS 30.0%
!!! AATGGAAAGTTGCTAGTTTT+AGG + chr1.4:82205452-82205471 None:intergenic 30.0%
AAAAACCAAACGATGACGAA+TGG + chr1.4:82207976-82207995 None:intergenic 35.0%
AAAACCTGTATGTTCTTCCA+GGG + chr1.4:82208467-82208486 None:intergenic 35.0%
AAGCAAGTGCTAAAGATGAT+AGG - chr1.4:82205933-82205952 MS.gene71615:CDS 35.0%
AATAGCAGTAGAAATTTCCC+TGG - chr1.4:82208447-82208466 MS.gene71615:CDS 35.0%
AATGTTTGCACAGCATTCTT+TGG - chr1.4:82208321-82208340 MS.gene71615:CDS 35.0%
ACCAATCTATAGAAGCAGAA+GGG - chr1.4:82207547-82207566 MS.gene71615:intron 35.0%
ACTTCTGTAGTCCTTGTAAA+GGG + chr1.4:82207404-82207423 None:intergenic 35.0%
AGCTATGTACAATGTGGATT+TGG - chr1.4:82205766-82205785 MS.gene71615:CDS 35.0%
AGGGAAATTTCTACTGCTAT+TGG + chr1.4:82208448-82208467 None:intergenic 35.0%
ATATTATGGGTAGGTTATCC+TGG - chr1.4:82207720-82207739 MS.gene71615:intron 35.0%
ATCCATAGCCAAATTCATAG+AGG + chr1.4:82208503-82208522 None:intergenic 35.0%
CAAAAACATGCATGTGACAA+AGG - chr1.4:82205422-82205441 MS.gene71615:CDS 35.0%
CAAATTGAACCAAAGCAAAC+CGG + chr1.4:82207949-82207968 None:intergenic 35.0%
CAACATAGGAGGGATATTAT+GGG - chr1.4:82207707-82207726 MS.gene71615:intron 35.0%
CGCGAAAAACATTCACATTA+GGG + chr1.4:82205811-82205830 None:intergenic 35.0%
CTTGTAAAGGGCTTGAATAA+CGG + chr1.4:82207392-82207411 None:intergenic 35.0%
GACTATGTAGTTGTATACCA+AGG + chr1.4:82207124-82207143 None:intergenic 35.0%
GATTGTGGATACCATGTAAA+TGG + chr1.4:82208384-82208403 None:intergenic 35.0%
GCATATCTAGAAACAACCAA+AGG + chr1.4:82205875-82205894 None:intergenic 35.0%
GCCAAAAATGCATAAGCAAT+TGG - chr1.4:82206084-82206103 MS.gene71615:intron 35.0%
GCCATAGCACAAGTAATATT+CGG - chr1.4:82207759-82207778 MS.gene71615:intron 35.0%
GTGTCATGTGCTCATATAAT+AGG - chr1.4:82206287-82206306 MS.gene71615:intron 35.0%
GTTACTAATCATAACTGTGG+TGG + chr1.4:82207352-82207371 None:intergenic 35.0%
GTTCCACTGAAACAATTGAT+AGG - chr1.4:82208771-82208790 MS.gene71615:CDS 35.0%
TAAAACCTGTATGTTCTTCC+AGG + chr1.4:82208468-82208487 None:intergenic 35.0%
TACATAGTCCTAATGAGACT+TGG - chr1.4:82207135-82207154 MS.gene71615:CDS 35.0%
TACTTCTGTAGTCCTTGTAA+AGG + chr1.4:82207405-82207424 None:intergenic 35.0%
TATGGTCTCATATATCATGC+AGG - chr1.4:82207009-82207028 MS.gene71615:CDS 35.0%
TCCATAGCCAAATTCATAGA+GGG + chr1.4:82208502-82208521 None:intergenic 35.0%
TCCGAATATTACTTGTGCTA+TGG + chr1.4:82207763-82207782 None:intergenic 35.0%
TCGCGAAAAACATTCACATT+AGG + chr1.4:82205812-82205831 None:intergenic 35.0%
TCTTTAGTGCATACATCAGA+TGG + chr1.4:82207204-82207223 None:intergenic 35.0%
TGCTAAAGATGATAGGCTTA+AGG - chr1.4:82205940-82205959 MS.gene71615:CDS 35.0%
TGCTCATATAATAGGGTGAA+TGG - chr1.4:82206295-82206314 MS.gene71615:intron 35.0%
TTGCAAATGGAAGTGACTTT+GGG + chr1.4:82207173-82207192 None:intergenic 35.0%
TTGTGGATACCATGTAAATG+GGG + chr1.4:82208382-82208401 None:intergenic 35.0%
TTTGCAAATGGAAGTGACTT+TGG + chr1.4:82207174-82207193 None:intergenic 35.0%
! AAAGAGCACAAGTTAAGGTT+GGG - chr1.4:82208799-82208818 MS.gene71615:CDS 35.0%
! AAGAACAATGGACCTTTTGA+CGG - chr1.4:82208693-82208712 MS.gene71615:CDS 35.0%
! ATATTTACGGAGATTTTCGC+AGG - chr1.4:82206192-82206211 MS.gene71615:intron 35.0%
! ATTTGAGACCATAAGGTATG+TGG + chr1.4:82208209-82208228 None:intergenic 35.0%
! TTGACATTTTCGCTTGTGAT+TGG - chr1.4:82208666-82208685 MS.gene71615:CDS 35.0%
!! ATAATTGGAAAGGCGTTGAT+CGG - chr1.4:82206002-82206021 MS.gene71615:intron 35.0%
!! ATTTTAGTCATAATGGCAGC+AGG - chr1.4:82207651-82207670 MS.gene71615:intron 35.0%
!! CTCTAACATTCGATTTGGTT+TGG - chr1.4:82208003-82208022 MS.gene71615:CDS 35.0%
!! GATAGTGAAGTGTTGCAAAA+TGG + chr1.4:82205470-82205489 None:intergenic 35.0%
!! GGTAAAAGAAAGTTGGTGAT+TGG - chr1.4:82208885-82208904 MS.gene71615:CDS 35.0%
!! TCATGTGGTGTTAGTGTTTT+TGG - chr1.4:82208719-82208738 MS.gene71615:CDS 35.0%
!!! ATTTGGCTGGTTTGACATTT+TGG - chr1.4:82205783-82205802 MS.gene71615:CDS 35.0%
!!! TGTGTTTTTCGGGATCATTA+TGG + chr1.4:82208571-82208590 None:intergenic 35.0%
AACACACAGCTCTTAAATGG+AGG + chr1.4:82206250-82206269 None:intergenic 40.0%
ACAAGCTTCTCTTGAAATCC+AGG + chr1.4:82207597-82207616 None:intergenic 40.0%
AGAGAAGCTTGTGAAAGATG+CGG - chr1.4:82207605-82207624 MS.gene71615:intron 40.0%
AGCTAGAGCTATGTACAATG+TGG - chr1.4:82205760-82205779 MS.gene71615:CDS 40.0%
ATAGGAGGGATATTATGGGT+AGG - chr1.4:82207711-82207730 MS.gene71615:intron 40.0%
ATATTCGGAGACTATAACCC+AGG - chr1.4:82207774-82207793 MS.gene71615:intron 40.0%
ATCTATTGTAGACCAAGCCT+TGG - chr1.4:82207104-82207123 MS.gene71615:CDS 40.0%
ATCTTATGAAACCAGAGCCA+AGG - chr1.4:82205487-82205506 MS.gene71615:CDS 40.0%
ATGTACAATGTGGATTTGGC+TGG - chr1.4:82205770-82205789 MS.gene71615:CDS 40.0%
ATTTAAGAGCTGTGTGTTGG+AGG - chr1.4:82206252-82206271 MS.gene71615:intron 40.0%
ATTTCCCTGGAAGAACATAC+AGG - chr1.4:82208460-82208479 MS.gene71615:CDS 40.0%
CAAAGAAGCCAAGTCTCATT+AGG + chr1.4:82207146-82207165 None:intergenic 40.0%
CAACTAGTAAACCCTTCTAC+CGG - chr1.4:82205548-82205567 MS.gene71615:CDS 40.0%
CGTTATTCAAGCCCTTTACA+AGG - chr1.4:82207390-82207409 MS.gene71615:intron 40.0%
CTCATGTTCATGTCTGTCAT+TGG + chr1.4:82208423-82208442 None:intergenic 40.0%
CTTCATGGTGTCTCAAATGT+AGG - chr1.4:82205617-82205636 MS.gene71615:CDS 40.0%
GACCAATCTATAGAAGCAGA+AGG - chr1.4:82207546-82207565 MS.gene71615:intron 40.0%
GCAACATAGGAGGGATATTA+TGG - chr1.4:82207706-82207725 MS.gene71615:intron 40.0%
GCAGGTTTAAACATGAACTG+CGG - chr1.4:82207027-82207046 MS.gene71615:CDS 40.0%
GGGAAATCCCTCTATGAATT+TGG - chr1.4:82208492-82208511 MS.gene71615:CDS 40.0%
GTGATTGGTGTGAAGAACAA+TGG - chr1.4:82208681-82208700 MS.gene71615:CDS 40.0%
TCACTTCCATTTGCAAACCT+TGG - chr1.4:82207177-82207196 MS.gene71615:CDS 40.0%
TCCAACACACAGCTCTTAAA+TGG + chr1.4:82206253-82206272 None:intergenic 40.0%
TCCATTTAAGAGCTGTGTGT+TGG - chr1.4:82206249-82206268 MS.gene71615:intron 40.0%
TCCCTCTATGAATTTGGCTA+TGG - chr1.4:82208498-82208517 MS.gene71615:CDS 40.0%
TGGTGAACAAACCTTCATAC+CGG - chr1.4:82208159-82208178 MS.gene71615:intron 40.0%
TGTAGTTGTATACCAAGGCT+TGG + chr1.4:82207119-82207138 None:intergenic 40.0%
TGTTTCAGACTGTGATTCAG+TGG - chr1.4:82206829-82206848 MS.gene71615:CDS 40.0%
TTCGGGATCATTATGGTAGA+AGG + chr1.4:82208564-82208583 None:intergenic 40.0%
TTTAAGAGCTGTGTGTTGGA+GGG - chr1.4:82206253-82206272 MS.gene71615:intron 40.0%
! AACAAACCTTCATACCGGTT+CGG - chr1.4:82208164-82208183 MS.gene71615:intron 40.0%
! AGAGTTAACTTGACATTGCC+TGG - chr1.4:82207576-82207595 MS.gene71615:intron 40.0%
! GAAAGAGCACAAGTTAAGGT+TGG - chr1.4:82208798-82208817 MS.gene71615:CDS 40.0%
! TAAACCAATCCGGTTTGCTT+TGG - chr1.4:82207937-82207956 MS.gene71615:intron 40.0%
! TATTTGAGACTTGAGAACGG+AGG - chr1.4:82208295-82208314 MS.gene71615:intron 40.0%
! TGAAGGTTTGTTCACCAGTT+CGG + chr1.4:82208156-82208175 None:intergenic 40.0%
! TGAATGTTTTTCGCGATCCA+AGG - chr1.4:82205816-82205835 MS.gene71615:CDS 40.0%
! TTGGTGTTCCTGCTTATGAA+TGG - chr1.4:82205582-82205601 MS.gene71615:CDS 40.0%
!! TCGGTTCCATTTTGATGCTA+AGG - chr1.4:82206021-82206040 MS.gene71615:intron 40.0%
AAAGACTCCTGAAGATGCAG+TGG - chr1.4:82206880-82206899 MS.gene71615:CDS 45.0%
AAAGGGCTTGAATAACGGCA+TGG + chr1.4:82207387-82207406 None:intergenic 45.0%
AACACCAAGCCTTGAAATGC+CGG + chr1.4:82205570-82205589 None:intergenic 45.0%
ACCACATGAGATCCGTCAAA+AGG + chr1.4:82208708-82208727 None:intergenic 45.0%
ACTGTGGTGGCATTTGCATT+CGG + chr1.4:82207339-82207358 None:intergenic 45.0%
AGAAGGAGCAGATGCTATGT+GGG + chr1.4:82208547-82208566 None:intergenic 45.0%
ATCTATAGAAGCAGAAGGGC+TGG - chr1.4:82207551-82207570 MS.gene71615:intron 45.0%
ATTACACCTTGGAGAAGGTC+TGG + chr1.4:82206340-82206359 None:intergenic 45.0%
CCTTAACTGCTGCAGCAAAA+AGG + chr1.4:82207485-82207504 None:intergenic 45.0%
CTCTGATTACACCTTGGAGA+AGG + chr1.4:82206345-82206364 None:intergenic 45.0%
CTTCTCCAAGGTGTAATCAG+AGG - chr1.4:82206343-82206362 MS.gene71615:intron 45.0%
GATGGTCCAAGGTTTGCAAA+TGG + chr1.4:82207186-82207205 None:intergenic 45.0%
GATTGGACAGCACACTATTC+TGG - chr1.4:82208902-82208921 MS.gene71615:CDS 45.0%
GCCCTTCTGCTTCTATAGAT+TGG + chr1.4:82207551-82207570 None:intergenic 45.0%
GTAGGTTATCCTGGTCAAGA+TGG - chr1.4:82207729-82207748 MS.gene71615:intron 45.0%
GTGAACCATTCGTCATCGTT+TGG - chr1.4:82207968-82207987 MS.gene71615:intron 45.0%
GTGTCTCAAATGTAGGACCA+GGG - chr1.4:82205624-82205643 MS.gene71615:CDS 45.0%
GTGTTCCTGCTTATGAATGG+TGG - chr1.4:82205585-82205604 MS.gene71615:CDS 45.0%
TAAGCGTGACACTAAGTCCT+TGG + chr1.4:82205507-82205526 None:intergenic 45.0%
TAGAAGGAGCAGATGCTATG+TGG + chr1.4:82208548-82208567 None:intergenic 45.0%
TCTGACCACCATTCATAAGC+AGG + chr1.4:82205593-82205612 None:intergenic 45.0%
TGAACCAAAGCAAACCGGAT+TGG + chr1.4:82207944-82207963 None:intergenic 45.0%
TGAATAACGGCATGGTATGC+CGG + chr1.4:82207379-82207398 None:intergenic 45.0%
TGCATACATCAGATGGTCCA+AGG + chr1.4:82207197-82207216 None:intergenic 45.0%
TGCTTATGAATGGTGGTCAG+AGG - chr1.4:82205592-82205611 MS.gene71615:CDS 45.0%
! ATGTTTTTCGCGATCCAAGG+TGG - chr1.4:82205819-82205838 MS.gene71615:CDS 45.0%
! CCTTTTTGCTGCAGCAGTTA+AGG - chr1.4:82207482-82207501 MS.gene71615:CDS 45.0%
! GTTCGTGGACTACAAGAAGT+TGG - chr1.4:82205905-82205924 MS.gene71615:CDS 45.0%
! TGTTTTTCGCGATCCAAGGT+GGG - chr1.4:82205820-82205839 MS.gene71615:CDS 45.0%
!! ACAAACCTTCATACCGGTTC+GGG - chr1.4:82208165-82208184 MS.gene71615:intron 45.0%
!! ACCTTTTGACGGATCTCATG+TGG - chr1.4:82208704-82208723 MS.gene71615:CDS 45.0%
!! AGTGGTGTTGGTTGTTGGAT+TGG - chr1.4:82207524-82207543 MS.gene71615:intron 45.0%
AACTCCAGGGGAAGATCCTT+TGG - chr1.4:82205856-82205875 MS.gene71615:CDS 50.0%
AAGGTGTAATCAGAGGCCAG+TGG - chr1.4:82206350-82206369 MS.gene71615:intron 50.0%
ACAACCAAAGGATCTTCCCC+TGG + chr1.4:82205863-82205882 None:intergenic 50.0%
ACCCTTCTACCGGCATTTCA+AGG - chr1.4:82205558-82205577 MS.gene71615:CDS 50.0%
AGCCTTGAAATGCCGGTAGA+AGG + chr1.4:82205563-82205582 None:intergenic 50.0%
AGGTCTGGATCAGCACATGT+AGG + chr1.4:82206325-82206344 None:intergenic 50.0%
AGGTGTAATCAGAGGCCAGT+GGG - chr1.4:82206351-82206370 MS.gene71615:intron 50.0%
GCAGCTGATAGTATCACTGC+TGG + chr1.4:82205689-82205708 None:intergenic 50.0%
GCAGGTGACAAAGCAAGACT+TGG - chr1.4:82206210-82206229 MS.gene71615:intron 50.0%
GCATTTCCTCCATCTTGACC+AGG + chr1.4:82207741-82207760 None:intergenic 50.0%
GCCTTGAAATGCCGGTAGAA+GGG + chr1.4:82205562-82205581 None:intergenic 50.0%
GGACAGCACACTATTCTGGT+TGG - chr1.4:82208906-82208925 MS.gene71615:CDS 50.0%
GGTGACAAAGCAAGACTTGG+AGG - chr1.4:82206213-82206232 MS.gene71615:intron 50.0%
GGTGTCTCAAATGTAGGACC+AGG - chr1.4:82205623-82205642 MS.gene71615:CDS 50.0%
GGTTATCCTGGTCAAGATGG+AGG - chr1.4:82207732-82207751 MS.gene71615:intron 50.0%
GTGGTAGGTCCCCATTTACA+TGG - chr1.4:82208370-82208389 MS.gene71615:CDS 50.0%
TCTACCGGCATTTCAAGGCT+TGG - chr1.4:82205563-82205582 MS.gene71615:CDS 50.0%
TCTTCGGTAACTTATGCGCG+TGG - chr1.4:82207429-82207448 MS.gene71615:intron 50.0%
TGACACTAAGTCCTTGGCTC+TGG + chr1.4:82205501-82205520 None:intergenic 50.0%
TGCTATGTGGGTGGAGAATG+TGG + chr1.4:82208535-82208554 None:intergenic 50.0%
TTATTACCGTCGTCCCGAAC+CGG + chr1.4:82208181-82208200 None:intergenic 50.0%
! ACTGGCCTCTGATTACACCT+TGG + chr1.4:82206351-82206370 None:intergenic 50.0%
! AGGTTTGTTCACCAGTTCGG+TGG + chr1.4:82208153-82208172 None:intergenic 50.0%
! GTTTTTCGCGATCCAAGGTG+GGG - chr1.4:82205821-82205840 MS.gene71615:CDS 50.0%
! TTTGGAGCCACCAAGTTCAG+AGG - chr1.4:82208737-82208756 MS.gene71615:CDS 50.0%
! TTTTTCGCGATCCAAGGTGG+GGG - chr1.4:82205822-82205841 MS.gene71615:CDS 50.0%
!! GATGCAGTGGTGTTGGTTGT+TGG - chr1.4:82207519-82207538 MS.gene71615:intron 50.0%
AGGAGCAGATGCTATGTGGG+TGG + chr1.4:82208544-82208563 None:intergenic 55.0%
CAAACCCATCTAGACCCCAC+TGG + chr1.4:82206369-82206388 None:intergenic 55.0%
CAACACCACTGCATCAGCAG+AGG + chr1.4:82207514-82207533 None:intergenic 55.0%
CCAAGTTCAGAGGTGGTGAG+TGG - chr1.4:82208747-82208766 MS.gene71615:CDS 55.0%
CCACTCACCACCTCTGAACT+TGG + chr1.4:82208750-82208769 None:intergenic 55.0%
CTCACCACCTCTGAACTTGG+TGG + chr1.4:82208747-82208766 None:intergenic 55.0%
CTCTGCTGATGCAGTGGTGT+TGG - chr1.4:82207512-82207531 MS.gene71615:CDS 55.0%
GATGCGGCTTCTGCTACCAA+AGG - chr1.4:82207621-82207640 MS.gene71615:intron 55.0%
GCAAGAGCCACTGCATCTTC+AGG + chr1.4:82206890-82206909 None:intergenic 55.0%
GCGTGGACAAGAAACTCCAG+GGG - chr1.4:82205844-82205863 MS.gene71615:CDS 55.0%
GCTGATCCAGACCTTCTCCA+AGG - chr1.4:82206331-82206350 MS.gene71615:intron 55.0%
GCTGGAAAGCTAGTAGCACC+TGG + chr1.4:82205671-82205690 None:intergenic 55.0%
GGCGTGGACAAGAAACTCCA+GGG - chr1.4:82205843-82205862 MS.gene71615:CDS 55.0%
GGTGTAATCAGAGGCCAGTG+GGG - chr1.4:82206352-82206371 MS.gene71615:intron 55.0%
GTAGTTCGGAACCACCGAAC+TGG - chr1.4:82208139-82208158 MS.gene71615:intron 55.0%
GTGGCTCTTGCACTGAAAGC+AGG - chr1.4:82206899-82206918 MS.gene71615:CDS 55.0%
!! GCTCTAGAAGCTGCGAAGCA+AGG - chr1.4:82207237-82207256 MS.gene71615:CDS 55.0%
!! TGGTGGTCAGAGGCACTTCA+TGG - chr1.4:82205602-82205621 MS.gene71615:CDS 55.0%
!! TTCATACCGGTTCGGGACGA+CGG - chr1.4:82208172-82208191 MS.gene71615:intron 55.0%
AGAGGCCAGTGGGGTCTAGA+TGG - chr1.4:82206361-82206380 MS.gene71615:intron 60.0%
AGGGACGCGTTTCGACAGCA+GGG - chr1.4:82205643-82205662 MS.gene71615:CDS 60.0%
GAGGCCAGTGGGGTCTAGAT+GGG - chr1.4:82206362-82206381 MS.gene71615:intron 60.0%
GGAGCCACCAAGTTCAGAGG+TGG - chr1.4:82208740-82208759 MS.gene71615:CDS 60.0%
GGGCGTGGACAAGAAACTCC+AGG - chr1.4:82205842-82205861 MS.gene71615:CDS 60.0%
GTCGTCCCGAACCGGTATGA+AGG + chr1.4:82208173-82208192 None:intergenic 60.0%
TGCAGCCTCTGCTGATGCAG+TGG - chr1.4:82207506-82207525 MS.gene71615:CDS 60.0%
! CGTTTCGACAGCAGGGTACC+AGG - chr1.4:82205650-82205669 MS.gene71615:CDS 60.0%
CAGGGACGCGTTTCGACAGC+AGG - chr1.4:82205642-82205661 MS.gene71615:CDS 65.0%
CTGCTGTCGAAACGCGTCCC+TGG + chr1.4:82205644-82205663 None:intergenic 65.0%
TCTTGTCCACGCCCCCACCT+TGG + chr1.4:82205836-82205855 None:intergenic 65.0%
CGCGATCCAAGGTGGGGGCG+TGG - chr1.4:82205827-82205846 MS.gene71615:CDS 75.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 82205359 82208998 82205359 ID=MS.gene71615
chr1.4 mRNA 82205359 82208998 82205359 ID=MS.gene71615.t1;Parent=MS.gene71615
chr1.4 exon 82208315 82208998 82208315 ID=MS.gene71615.t1.exon1;Parent=MS.gene71615.t1
chr1.4 CDS 82208315 82208998 82208315 ID=cds.MS.gene71615.t1;Parent=MS.gene71615.t1
chr1.4 exon 82207974 82208143 82207974 ID=MS.gene71615.t1.exon2;Parent=MS.gene71615.t1
chr1.4 CDS 82207974 82208143 82207974 ID=cds.MS.gene71615.t1;Parent=MS.gene71615.t1
chr1.4 exon 82207437 82207534 82207437 ID=MS.gene71615.t1.exon3;Parent=MS.gene71615.t1
chr1.4 CDS 82207437 82207534 82207437 ID=cds.MS.gene71615.t1;Parent=MS.gene71615.t1
chr1.4 exon 82206562 82207326 82206562 ID=MS.gene71615.t1.exon4;Parent=MS.gene71615.t1
chr1.4 CDS 82206562 82207326 82206562 ID=cds.MS.gene71615.t1;Parent=MS.gene71615.t1
chr1.4 exon 82205359 82205987 82205359 ID=MS.gene71615.t1.exon5;Parent=MS.gene71615.t1
chr1.4 CDS 82205359 82205987 82205359 ID=cds.MS.gene71615.t1;Parent=MS.gene71615.t1
Gene Sequence

>MS.gene71615

ATGAAAAATCATCTTTTGTTCTCATGTATTTTCTTTTCATTTTTGATACATCCAATTACTAGTCAAAAACATGCATGTGACAAAGGCTCTCCTAAAACTAGCAACTTTCCATTTTGCAACACTTCACTATCTTATGAAACCAGAGCCAAGGACTTAGTGTCACGCTTAACACTTCAAGAAAAAGCACAACAACTAGTAAACCCTTCTACCGGCATTTCAAGGCTTGGTGTTCCTGCTTATGAATGGTGGTCAGAGGCACTTCATGGTGTCTCAAATGTAGGACCAGGGACGCGTTTCGACAGCAGGGTACCAGGTGCTACTAGCTTTCCAGCAGTGATACTATCAGCTGCTAGTTTTAATGAAACATTATGGTACAAAATGGGACAAGTTGTGTCAAATGAAGCTAGAGCTATGTACAATGTGGATTTGGCTGGTTTGACATTTTGGAGCCCTAATGTGAATGTTTTTCGCGATCCAAGGTGGGGGCGTGGACAAGAAACTCCAGGGGAAGATCCTTTGGTTGTTTCTAGATATGCTGTAAATTATGTTCGTGGACTACAAGAAGTTGGTGATGAAGCAAGTGCTAAAGATGATAGGCTTAAGGTTTCTAGCTGTTGTAAGCATTATACTGCTTATGATGTTGATAATTGGAAAGGCGTTGATCGGTTCCATTTTGATGCTAAGGTAATAAAGATGACAAATTAGACCATGAAATTTAATATGCTGCCAAAAATGCATAAGCAATTGGATCATGATGACAGAATAATTTAATGACTATCACCGAACGTGTTAAATATTTTTACAACTGCATCCAATCATATATCACCATGTAGATATTTACGGAGATTTTCGCAGGTGACAAAGCAAGACTTGGAGGATACTTATCAGCCTCCATTTAAGAGCTGTGTGTTGGAGGGACATGTTAGCAGTGTCATGTGCTCATATAATAGGGTGAATGGAATTCCTACATGTGCTGATCCAGACCTTCTCCAAGGTGTAATCAGAGGCCAGTGGGGTCTAGATGGGTTTGTCTCTATCCCTAAGCAATCATTTGATTTTTTTCCTTACATGTCAAGCTAACTTAAACACTAAAGCAATTTATACCTTTATACCTATGATAGCTATGATAAACTACATACTATCTTAGTCCCTAAATATAGGATTTAGTTGACTAAATTACTAGAATTTGGAAAGTTGGTATAGCAGTATGAAATTTGTTAAGAATTAGTAGTATTGTTTTACAGGAATGACAACTAATTTATATTTCTATCATAGTATTCATTAAAGGTTGTAGAAAAGGATGTAACGTAATTAAGAGTATGTTGATAAAAATAATAATTAACGCAGTTGAAAATTTGAAACGGTGTCTTATAAAAAGGGATAAGGAAAAATCTCAACATAATCTTATATTTAGAGACAGATAACTAAAAGAAGCTCCCTGATATCTTATACTTTTTTGAACAGATATATTGTTTCAGACTGTGATTCAGTGGAAGTTTATTACGACTCGATTCATTACACAAAGACTCCTGAAGATGCAGTGGCTCTTGCACTGAAAGCAGGTAATCAAGTAGAACTGAAGTTGAAACTGCAAAAAAAATTCTGATTGGGAAGAAATAAAGTTATGACTGGTATTGGATTATTAAATGGTATGGTCTCATATATCATGCAGGTTTAAACATGAACTGCGGCGACTTTCTTAAAAAGTACACTGCAAATGCTGTAAACTTGAAGAAAGTAGATGTATCTATTGTAGACCAAGCCTTGGTATACAACTACATAGTCCTAATGAGACTTGGCTTCTTTGAAAACCCAAAGTCACTTCCATTTGCAAACCTTGGACCATCTGATGTATGCACTAAAGAAAATCAGCAATTGGCTCTAGAAGCTGCGAAGCAAGGAATAGTTTTGCTTGAAAACAACAAAGGAGCTCTTCCTTTATCAAAAACTAAGATAAAAAATTTGGCTGTGATTGGACCGAATGCAAATGCCACCACAGTTATGATTAGTAACTATGCCGGCATACCATGCCGTTATTCAAGCCCTTTACAAGGACTACAGAAGTACATTTCTTCGGTAACTTATGCGCGTGGTTGCAGTGATGTTAAATGCAGTAATCAGAACCTTTTTGCTGCAGCAGTTAAGGCTGCAGCCTCTGCTGATGCAGTGGTGTTGGTTGTTGGATTGGACCAATCTATAGAAGCAGAAGGGCTGGATAGAGTTAACTTGACATTGCCTGGATTTCAAGAGAAGCTTGTGAAAGATGCGGCTTCTGCTACCAAAGGAACATTGATTTTAGTCATAATGGCAGCAGGCCCAATTGATATTTCTTTCACTAAAAGTATAAGCAACATAGGAGGGATATTATGGGTAGGTTATCCTGGTCAAGATGGAGGAAATGCCATAGCACAAGTAATATTCGGAGACTATAACCCAGGTATAGCTTTCTATTAAACTATTAAAATACCTACATTTATCTTTACATATTTTGTTACCTATGACAGTTAAAAAAAACATTAATTGATCTGTTAAACTGAACTGAAAAATATGAAGTGTGCTGATAGTTCACAAACTTAACTAAACCAATCCGGTTTGCTTTGGTTCAATTTGTGAACCATTCGTCATCGTTTGGTTTTTTAAACAACTCTAACATTCGATTTGGTTTGGTTTTTGATATTTTTTCATTAGTCCTAATTATCAATTTATAATAGCAATTTGACATACTTTGATTCATAAAAATCAGTTTGGTTCGAAAAACTACAATTTGATTTTATGTAAAGGTAGTTCGGAACCACCGAACTGGTGAACAAACCTTCATACCGGTTCGGGACGACGGTAATAATGTTACCACATACCTTATGGTCTCAAATATAAACAAACAAGTCTACACATTTAATCCAAGTTTATACCAAACACATAAACTTTTATTTTTCTTATATTTGAGACTTGAGAACGGAGGAGTAATGTTTGCACAGCATTCTTTGGACTAACAGTGAAAATTTTATTTATAGGTGGTAGGTCCCCATTTACATGGTATCCACAATCATATGTTGATCAAGTTCCAATGACAGACATGAACATGAGAGCCAATAGCAGTAGAAATTTCCCTGGAAGAACATACAGGTTTTACAATGGGAAATCCCTCTATGAATTTGGCTATGGATTAAGCTACTCCACATTCTCCACCCACATAGCATCTGCTCCTTCTACCATAATGATCCCGAAAAACACATCCATTTCAAAACCACTTAATAATATCTTCCTTGATGATCAAGCAATTGATATTTCCACCATAAGTTGTTTGAATTTGACATTTTCGCTTGTGATTGGTGTGAAGAACAATGGACCTTTTGACGGATCTCATGTGGTGTTAGTGTTTTTGGAGCCACCAAGTTCAGAGGTGGTGAGTGGTGTTCCACTGAAACAATTGATAGGATTTGAAAGAGCACAAGTTAAGGTTGGGAAGACAGAGTTTGTGACAGTAAAAATTGATATATGCAAATTGCTAAGTAATGTTGATAGTGATGGTAAAAGAAAGTTGGTGATTGGACAGCACACTATTCTGGTTGGAGCTTCTAGTGAAAAACAAGTTACACACCACATTGATATTACAAATGGAGAAGCATTAAGGCCTGAGTGA
Protein sequence

>MS.gene71615.t1

MKNHLLFSCIFFSFLIHPITSQKHACDKGSPKTSNFPFCNTSLSYETRAKDLVSRLTLQEKAQQLVNPSTGISRLGVPAYEWWSEALHGVSNVGPGTRFDSRVPGATSFPAVILSAASFNETLWYKMGQVVSNEARAMYNVDLAGLTFWSPNVNVFRDPRWGRGQETPGEDPLVVSRYAVNYVRGLQEVGDEASAKDDRLKVSSCCKHYTAYDVDNWKGVDRFHFDAKVTKQDLEDTYQPPFKSCVLEGHVSSVMCSYNRVNGIPTCADPDLLQGVIRGQWGLDGYIVSDCDSVEVYYDSIHYTKTPEDAVALALKAGLNMNCGDFLKKYTANAVNLKKVDVSIVDQALVYNYIVLMRLGFFENPKSLPFANLGPSDVCTKENQQLALEAAKQGIVLLENNKGALPLSKTKIKNLAVIGPNANATTVMISNYAGIPCRYSSPLQGLQKYISSVTYARGCSDVKCSNQNLFAAAVKAAASADAVVLVVGLDQSIEAEGLDRVNLTLPGFQEKLVKDAASATKGTLILVIMAAGPIDISFTKSISNIGGILWVGYPGQDGGNAIAQVIFGDYNPGGRSPFTWYPQSYVDQVPMTDMNMRANSSRNFPGRTYRFYNGKSLYEFGYGLSYSTFSTHIASAPSTIMIPKNTSISKPLNNIFLDDQAIDISTISCLNLTFSLVIGVKNNGPFDGSHVVLVFLEPPSSEVVSGVPLKQLIGFERAQVKVGKTEFVTVKIDICKLLSNVDSDGKRKLVIGQHTILVGASSEKQVTHHIDITNGEALRPE