AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene96691

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96691.t1 MTR_1g106860 97.567 781 19 0 1 781 1 781 0.0 1580
MS.gene96691.t1 MTR_2g008240 55.906 762 317 8 5 759 16 765 0.0 867
MS.gene96691.t1 MTR_4g094285 54.688 768 318 9 6 759 13 764 0.0 855
MS.gene96691.t1 MTR_1g087240 54.222 758 334 6 3 759 2 747 0.0 844
MS.gene96691.t1 MTR_7g109390 53.804 736 328 6 25 759 29 753 0.0 825
MS.gene96691.t1 MTR_2g034720 53.197 735 328 5 25 759 28 746 0.0 809
MS.gene96691.t1 MTR_5g062430 49.054 793 369 15 4 774 3 782 0.0 767
MS.gene96691.t1 MTR_5g062320 49.737 760 360 13 24 774 34 780 0.0 759
MS.gene96691.t1 MTR_3g074060 50.067 749 347 11 25 759 31 766 0.0 755
MS.gene96691.t1 MTR_5g062370 48.597 784 377 15 5 776 15 784 0.0 753
MS.gene96691.t1 MTR_5g030860 48.793 787 370 11 8 774 9 782 0.0 752
MS.gene96691.t1 MTR_5g062650 48.120 798 372 16 4 774 3 785 0.0 742
MS.gene96691.t1 MTR_5g062370 52.850 579 257 10 5 573 15 587 0.0 623
MS.gene96691.t1 MTR_6g028120 26.269 670 348 29 32 625 3 602 6.39e-37 147
MS.gene96691.t1 MTR_7g086030 27.083 624 337 27 38 591 4 579 3.81e-35 142
MS.gene96691.t1 MTR_7g086030 27.083 624 337 27 38 591 29 604 6.39e-35 142
MS.gene96691.t1 MTR_6g028090 26.778 661 326 32 47 625 37 621 2.48e-34 140
MS.gene96691.t1 MTR_6g028100 25.938 613 340 25 47 591 37 603 1.31e-32 134
MS.gene96691.t1 MTR_3g079750 25.786 636 362 29 48 625 38 621 2.02e-32 134
MS.gene96691.t1 MTR_6g028110 25.284 617 339 25 47 591 38 604 5.75e-32 133
MS.gene96691.t1 MTR_6g028110 24.608 638 359 25 26 591 17 604 1.26e-31 131
MS.gene96691.t1 MTR_2g030000 25.728 618 333 27 48 591 40 605 1.54e-29 125
MS.gene96691.t1 MTR_5g069800 25.735 544 314 24 73 581 85 573 4.60e-27 117
MS.gene96691.t1 MTR_3g462820 25.077 650 345 26 11 581 3 589 5.14e-27 117
MS.gene96691.t1 MTR_5g069740 25.279 538 312 23 73 581 85 561 2.44e-25 112
MS.gene96691.t1 MTR_7g086010 28.338 367 215 17 73 423 118 452 1.17e-23 105
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96691.t1 AT3G19620 70.658 760 208 8 21 774 23 773 0.0 1115
MS.gene96691.t1 AT5G64570 55.683 783 315 12 4 774 22 784 0.0 866
MS.gene96691.t1 AT5G09730 53.350 791 330 16 2 774 4 773 0.0 834
MS.gene96691.t1 AT1G02640 53.117 770 333 8 3 763 4 754 0.0 828
MS.gene96691.t1 AT5G49360 53.264 766 338 10 1 759 10 762 0.0 813
MS.gene96691.t1 AT5G10560 48.745 757 351 9 31 759 35 782 0.0 742
MS.gene96691.t1 AT1G78060 48.212 755 377 9 14 761 12 759 0.0 732
MS.gene96691.t1 AT5G64570 61.446 581 210 8 4 578 22 594 0.0 726
MS.gene96691.t1 AT5G64570 55.418 646 259 10 138 774 1 626 0.0 715
MS.gene96691.t1 AT5G09700 47.887 497 236 7 286 774 45 526 3.95e-157 468
MS.gene96691.t1 AT3G47040 25.571 657 364 30 38 628 10 607 2.47e-32 134
MS.gene96691.t1 AT3G47010 25.801 624 371 25 32 599 5 592 4.49e-32 132
MS.gene96691.t1 AT3G62710 27.036 614 348 31 45 624 101 648 5.40e-32 133
MS.gene96691.t1 AT3G47000 25.307 652 366 25 38 625 10 604 7.13e-32 132
MS.gene96691.t1 AT5G20950 25.309 648 357 28 48 629 36 622 1.40e-30 128
MS.gene96691.t1 AT5G20950 25.309 648 357 28 48 629 36 622 1.40e-30 128
MS.gene96691.t1 AT5G20950 25.309 648 357 28 48 629 114 700 2.07e-30 128
MS.gene96691.t1 AT3G47010 24.960 621 379 23 32 599 5 591 4.87e-30 126
MS.gene96691.t1 AT3G47050 25.980 612 364 24 35 591 7 584 1.13e-29 125
MS.gene96691.t1 AT5G04885 26.316 551 323 24 72 592 108 605 5.17e-29 124
MS.gene96691.t1 AT5G04885 26.316 551 323 24 72 592 108 605 5.17e-29 124
MS.gene96691.t1 AT5G04885 26.316 551 323 24 72 592 125 622 5.18e-29 124
MS.gene96691.t1 AT3G47040 25.037 683 360 32 38 628 10 632 8.82e-29 123
MS.gene96691.t1 AT3G47000 28.000 450 226 18 38 423 10 425 1.86e-27 117
MS.gene96691.t1 AT3G47040 27.169 438 245 18 38 423 10 425 3.11e-26 113
MS.gene96691.t1 AT5G20940 27.306 553 309 26 73 591 111 604 1.50e-25 112
MS.gene96691.t1 AT3G47010 27.540 443 249 18 32 423 5 426 8.86e-25 108
MS.gene96691.t1 AT3G47010 25.060 415 270 16 199 599 26 413 4.05e-20 94.4
MS.gene96691.t1 AT3G47050 26.133 375 219 14 35 365 7 367 1.25e-17 86.3
MS.gene96691.t1 AT3G47000 24.242 462 292 20 183 625 5 427 2.66e-17 85.9

Find 166 sgRNAs with CRISPR-Local

Find 267 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTGGCTGGTTTGACATTT+TGG 0.130488 1.1:-76437527 MS.gene96691:CDS
GCAACATAGGAGGGATATTA+TGG 0.220056 1.1:-76435602 MS.gene96691:CDS
TGAAACATTATGGTACAAAA+TGG 0.221947 1.1:-76437592 MS.gene96691:CDS
CTGCTTATGATGTTGATAAT+TGG 0.227264 1.1:-76437323 MS.gene96691:CDS
AGGGAAATTTCTACTGATAT+TGG 0.228239 1.1:+76434864 None:intergenic
GCCATAGCACAAGTAATATT+TGG 0.228912 1.1:-76435549 MS.gene96691:CDS
GGGAAATCCCTCTATGAATT+TGG 0.249033 1.1:-76434817 MS.gene96691:CDS
GTGTCATGTGCTCATATAAT+AGG 0.254476 1.1:-76437022 MS.gene96691:CDS
GATTGTGGATACCATGTAAA+TGG 0.264876 1.1:+76434928 None:intergenic
TCCAACACACAGCTCTTAAA+TGG 0.278527 1.1:+76437059 None:intergenic
TTATTACCTTAGCATCAAAA+TGG 0.295146 1.1:+76437283 None:intergenic
CAAAGAAGCCAAGTCTCATT+AGG 0.298010 1.1:+76436165 None:intergenic
TGTCAAATTCAAACAACTTA+TGG 0.308883 1.1:+76434660 None:intergenic
AATCCTATCAATTGTTTCAA+TGG 0.312892 1.1:+76434535 None:intergenic
TAAAACCTGTATGTTCTTCC+AGG 0.325928 1.1:+76434844 None:intergenic
GCCCTTCTGCTTCTATAGAT+TGG 0.325933 1.1:+76435760 None:intergenic
GATAGTGAAGTGTTGCAAAA+TGG 0.335511 1.1:+76437843 None:intergenic
AGCCTTGAAATGCCGGTAGA+AGG 0.350533 1.1:+76437750 None:intergenic
GATTGGACAGCACACTATTC+TGG 0.361517 1.1:-76434407 MS.gene96691:CDS
AGAGGCCAGTGGGGTCTAGA+TGG 0.363411 1.1:-76436948 MS.gene96691:CDS
GTTCCATTGAAACAATTGAT+AGG 0.364046 1.1:-76434538 MS.gene96691:CDS
CACCACATTGATATTACAAT+TGG 0.364152 1.1:-76434355 MS.gene96691:CDS
GCAAGAGCCACTGCATCTTC+AGG 0.368484 1.1:+76436421 None:intergenic
GACTAAAATCAATGTTCCTT+TGG 0.370514 1.1:+76435671 None:intergenic
AGCTATGTACAATGTGGATT+TGG 0.386393 1.1:-76437544 MS.gene96691:CDS
TTCTGGATCATTATAGTAGA+AGG 0.386843 1.1:+76434748 None:intergenic
AGAGTTAACTTGACATTGCC+TGG 0.387425 1.1:-76435732 MS.gene96691:CDS
TTAGTGAAAGAAATATCAAT+TGG 0.388314 1.1:+76435633 None:intergenic
CCACTCACCACTTCTGAACT+TGG 0.388607 1.1:+76434562 None:intergenic
TTTGCAAATGGAAGTGACTT+TGG 0.397416 1.1:+76436137 None:intergenic
TTGCAAATGGAAGTGACTTT+GGG 0.402569 1.1:+76436138 None:intergenic
AACTCCAGGGGAAGATCCTT+TGG 0.404077 1.1:-76437454 MS.gene96691:CDS
TGCTAAAGATGATAGGCTTA+AGG 0.408182 1.1:-76437370 MS.gene96691:CDS
GATACAGTGGTGTTGGTTGT+TGG 0.412529 1.1:-76435789 MS.gene96691:CDS
ACTGTGGTGGCATTTGCATT+TGG 0.412568 1.1:+76435972 None:intergenic
CTCATGTTCATGTCTGTCAT+TGG 0.420175 1.1:+76434889 None:intergenic
AAAGAGCACAAGTTAAGGTT+GGG 0.420572 1.1:-76434510 MS.gene96691:CDS
ACAAGCTTCTCTTGAAATCC+AGG 0.424917 1.1:+76435714 None:intergenic
TCTACCGGCATTTCAAGGCT+TGG 0.426574 1.1:-76437747 MS.gene96691:CDS
ACCCTTCTACCGGCATTTCA+AGG 0.433066 1.1:-76437752 MS.gene96691:CDS
AGTGGTGTTGGTTGTTGGAT+TGG 0.437442 1.1:-76435784 MS.gene96691:CDS
ACTTCTGTAGTCCTTGTAAA+GGG 0.438650 1.1:+76435907 None:intergenic
TACTTCTGTAGTCCTTGTAA+AGG 0.441252 1.1:+76435906 None:intergenic
CACTAAAGAAAATCAGCAAT+TGG 0.455452 1.1:-76436093 MS.gene96691:CDS
ATTTGAAAGAGCACAAGTTA+AGG 0.457325 1.1:-76434515 MS.gene96691:CDS
AAGCAAGTGCTAAAGATGAT+AGG 0.460961 1.1:-76437377 MS.gene96691:CDS
TGCTCATATAATAGGGTGAA+TGG 0.462881 1.1:-76437014 MS.gene96691:CDS
TTGGTGTTCCTGCTTATGAA+TGG 0.463212 1.1:-76437728 MS.gene96691:CDS
ATTACACCTTGGAGAAGGTC+TGG 0.463689 1.1:+76436972 None:intergenic
GAAACATTATGGTACAAAAT+GGG 0.466706 1.1:-76437591 MS.gene96691:CDS
GAAAGAGCACAAGTTAAGGT+TGG 0.467163 1.1:-76434511 MS.gene96691:CDS
ATCTATAGAAGCAGAAGGGC+TGG 0.468944 1.1:-76435757 MS.gene96691:CDS
TGTCATGTGCTCATATAATA+GGG 0.473992 1.1:-76437021 MS.gene96691:CDS
CAGGGACGCGTTTCGATAGC+AGG 0.477482 1.1:-76437668 MS.gene96691:CDS
TCCCTCTATGAATTTGGCTA+TGG 0.484680 1.1:-76434811 MS.gene96691:CDS
CTCTGCTGATACAGTGGTGT+TGG 0.484940 1.1:-76435796 MS.gene96691:CDS
ATTTAAGAGCTGTGTGTTGG+AGG 0.484967 1.1:-76437057 MS.gene96691:CDS
ACTAAAAGTGTAAGCAACAT+AGG 0.484978 1.1:-76435615 MS.gene96691:CDS
TGACACTAAGTCCTTGGCTC+TGG 0.485207 1.1:+76437812 None:intergenic
TCACTTCCATTTGCAAACCT+TGG 0.486006 1.1:-76436131 MS.gene96691:CDS
ATTTCCCTGGAAGAACATAC+AGG 0.486697 1.1:-76434849 MS.gene96691:CDS
AACACCAAGCCTTGAAATGC+CGG 0.491966 1.1:+76437743 None:intergenic
TATGCTGTAAATTATGTTCG+TGG 0.495123 1.1:-76437420 MS.gene96691:CDS
CAACATAGGAGGGATATTAT+GGG 0.496768 1.1:-76435601 MS.gene96691:CDS
ATTGTGGATACCATGTAAAT+GGG 0.498218 1.1:+76434929 None:intergenic
CGATATTCAAGCCCTTTACA+AGG 0.501394 1.1:-76435918 MS.gene96691:CDS
TCCAAATATTACTTGTGCTA+TGG 0.501814 1.1:+76435548 None:intergenic
TAGTGAAAGAAATATCAATT+GGG 0.504026 1.1:+76435634 None:intergenic
TCCATTTAAGAGCTGTGTGT+TGG 0.505176 1.1:-76437060 MS.gene96691:CDS
ATGTACAATGTGGATTTGGC+TGG 0.507340 1.1:-76437540 MS.gene96691:CDS
GATGGTCCAAGGTTTGCAAA+TGG 0.509359 1.1:+76436125 None:intergenic
GCCTTGAAATGCCGGTAGAA+GGG 0.510160 1.1:+76437751 None:intergenic
ATATTATGGGTAGGTTATCC+TGG 0.512772 1.1:-76435588 MS.gene96691:CDS
CTTGTAAAGGGCTTGAATAT+CGG 0.513958 1.1:+76435919 None:intergenic
ATATTTGGAGACTATAACCC+AGG 0.518089 1.1:-76435534 MS.gene96691:intron
CTGCTATCGAAACGCGTCCC+TGG 0.518333 1.1:+76437669 None:intergenic
GCAGGTGACAAAGCAAGACT+TGG 0.520570 1.1:-76437099 MS.gene96691:intron
TCTTTAGTGCATACATCAGA+TGG 0.520982 1.1:+76436107 None:intergenic
TGGTGGTCAGAGGCACTTCA+TGG 0.521560 1.1:-76437708 MS.gene96691:CDS
GGTGACAAAGCAAGACTTGG+AGG 0.523632 1.1:-76437096 MS.gene96691:CDS
CGTTTCGATAGCAGGGTACC+TGG 0.524275 1.1:-76437660 MS.gene96691:CDS
TCAAGGAAGATATTATTAAG+TGG 0.524739 1.1:+76434706 None:intergenic
TATCAATTGCTTGATCATCA+AGG 0.526561 1.1:+76434689 None:intergenic
GGTAAACGAAAGTTGGTGAT+TGG 0.526693 1.1:-76434424 MS.gene96691:CDS
GTGGCTCTTGCACTGAAAGC+AGG 0.529634 1.1:-76436409 MS.gene96691:intron
TGTAGTTGTATACCAGGGCT+TGG 0.535216 1.1:+76436192 None:intergenic
GGACTATGTAGTTGTATACC+AGG 0.535357 1.1:+76436186 None:intergenic
CTTCATGGTGTCTCAAATGT+AGG 0.539417 1.1:-76437693 MS.gene96691:CDS
AATATCAGTAGAAATTTCCC+TGG 0.539925 1.1:-76434862 MS.gene96691:CDS
GGGCGTGGACAAGAAACTCC+AGG 0.541036 1.1:-76437468 MS.gene96691:CDS
TTTAAGAGCTGTGTGTTGGA+GGG 0.541333 1.1:-76437056 MS.gene96691:CDS
GTTCGTGGACTACAAGAAGT+TGG 0.541602 1.1:-76437405 MS.gene96691:CDS
GGCAGCCTCTGCTGATACAG+TGG 0.544457 1.1:-76435802 MS.gene96691:CDS
AGAAGGAGCAGATGCTATGT+GGG 0.551576 1.1:+76434765 None:intergenic
ACCACATGAGATCCATCAAA+AGG 0.551827 1.1:+76434604 None:intergenic
ATAATTGGAAAGGCGTTGAT+CGG 0.552315 1.1:-76437308 MS.gene96691:CDS
GGACAGCACACTATTCTGGT+TGG 0.552636 1.1:-76434403 MS.gene96691:CDS
ATCCATAGCCAAATTCATAG+AGG 0.557580 1.1:+76434809 None:intergenic
TAAGCGTGACACTAAGTCCT+TGG 0.559465 1.1:+76437806 None:intergenic
GTTATGATTAGTAACTATGC+TGG 0.561465 1.1:-76435951 MS.gene96691:CDS
CTCTGATTACACCTTGGAGA+AGG 0.562519 1.1:+76436967 None:intergenic
GAGGCCAGTGGGGTCTAGAT+GGG 0.564760 1.1:-76436947 MS.gene96691:intron
GCAGCTGATAGTATCACTGC+TGG 0.566392 1.1:+76437624 None:intergenic
AAAACCTGTATGTTCTTCCA+GGG 0.569628 1.1:+76434845 None:intergenic
CTCACCACTTCTGAACTTGG+TGG 0.569744 1.1:+76434565 None:intergenic
TCTGACCACCATTCATAAGC+AGG 0.570631 1.1:+76437720 None:intergenic
TGTTTCAGACTGTGATTCAG+TGG 0.570986 1.1:-76436479 MS.gene96691:CDS
GCTCTAGAAGCTGCGAAGCA+AGG 0.571329 1.1:-76436071 MS.gene96691:CDS
GGTGTCTCAAATGTAGGACC+AGG 0.572126 1.1:-76437687 MS.gene96691:CDS
GTGTTCCTGCTTATGAATGG+TGG 0.572399 1.1:-76437725 MS.gene96691:CDS
TGCATACATCAGATGGTCCA+AGG 0.572554 1.1:+76436114 None:intergenic
AAAAGTGTAAGCAACATAGG+AGG 0.573233 1.1:-76435612 MS.gene96691:CDS
AGGTGTAATCAGAGGCCAGT+GGG 0.573573 1.1:-76436958 MS.gene96691:CDS
GTAGGTTATCCTGGTCAAGA+TGG 0.574821 1.1:-76435579 MS.gene96691:CDS
TACATAGTCCTAATGAGACT+TGG 0.576502 1.1:-76436173 MS.gene96691:CDS
TAGAAGGAGCAGATGCTATG+TGG 0.577310 1.1:+76434764 None:intergenic
TCCATAGCCAAATTCATAGA+GGG 0.577492 1.1:+76434810 None:intergenic
TAGTGATGGTAAACGAAAGT+TGG 0.578355 1.1:-76434431 MS.gene96691:CDS
GGAGCCACCAAGTTCAGAAG+TGG 0.580834 1.1:-76434569 MS.gene96691:CDS
ATCTATTGTAGACCAAGCCC+TGG 0.580878 1.1:-76436204 MS.gene96691:CDS
CAAATTCAAACAACTTATGG+TGG 0.582768 1.1:+76434663 None:intergenic
GCATTTCCTCCATCTTGACC+AGG 0.588584 1.1:+76435570 None:intergenic
GTGGTAGGTCCCCATTTACA+TGG 0.594929 1.1:-76434939 MS.gene96691:CDS
CAACTAGTAAACCCTTCTAC+CGG 0.596049 1.1:-76437762 MS.gene96691:CDS
ACAACCAAAGGATCTTCCCC+TGG 0.596108 1.1:+76437450 None:intergenic
GGCGTGGACAAGAAACTCCA+GGG 0.596923 1.1:-76437467 MS.gene96691:CDS
GACCAATCTATAGAAGCAGA+AGG 0.600841 1.1:-76435762 MS.gene96691:CDS
TGCTATGTGGGTAGAGAATG+TGG 0.601022 1.1:+76434777 None:intergenic
CTAAGTAATGTTGATAGTGA+TGG 0.602583 1.1:-76434445 MS.gene96691:CDS
TGCTTATGAATGGTGGTCAG+AGG 0.605760 1.1:-76437718 MS.gene96691:CDS
ATCTTATGAAACCAGAGCCA+AGG 0.606136 1.1:-76437823 MS.gene96691:CDS
TCTTCAGTAACTTACGCGCA+TGG 0.611081 1.1:-76435879 MS.gene96691:CDS
AAAGTGTAAGCAACATAGGA+GGG 0.615065 1.1:-76435611 MS.gene96691:CDS
TATGATGTTGATAATTGGAA+AGG 0.616039 1.1:-76437318 MS.gene96691:CDS
AGGTCTGGATCAGCACATGT+AGG 0.621412 1.1:+76436987 None:intergenic
AAAGACTCCTGAAGATGCAG+TGG 0.622680 1.1:-76436428 MS.gene96691:CDS
GTGATTGGTGTGAAGAACAA+TGG 0.624345 1.1:-76434628 MS.gene96691:CDS
GATGTGGCTGCTGCTACCAA+AGG 0.627255 1.1:-76435687 MS.gene96691:CDS
GGTTATCCTGGTCAAGATGG+AGG 0.630089 1.1:-76435576 MS.gene96691:CDS
GTTACTAATCATAACTGTGG+TGG 0.637990 1.1:+76435959 None:intergenic
ACTGGCCTCTGATTACACCT+TGG 0.640961 1.1:+76436961 None:intergenic
CATTGATATTACAATTGGAG+AGG 0.641938 1.1:-76434350 MS.gene96691:CDS
CTTCTCCAAGGTGTAATCAG+AGG 0.642134 1.1:-76436966 MS.gene96691:CDS
CAAACCCATCTAGACCCCAC+TGG 0.647961 1.1:+76436943 None:intergenic
ACTTGATCGACATATGATTG+TGG 0.652204 1.1:+76434913 None:intergenic
GCTGGAAAGCTAGTAGCACC+AGG 0.654050 1.1:+76437642 None:intergenic
AACACACAGCTCTTAAATGG+AGG 0.654259 1.1:+76437062 None:intergenic
GCTGATCCAGACCTTCTCCA+AGG 0.658385 1.1:-76436978 MS.gene96691:CDS
ATAGGAGGGATATTATGGGT+AGG 0.660257 1.1:-76435597 MS.gene96691:CDS
ACCAATCTATAGAAGCAGAA+GGG 0.660435 1.1:-76435761 MS.gene96691:CDS
GACTATGTAGTTGTATACCA+GGG 0.665456 1.1:+76436187 None:intergenic
CCAAGTTCAGAAGTGGTGAG+TGG 0.668174 1.1:-76434562 MS.gene96691:CDS
AGCTAGAGCTATGTACAATG+TGG 0.670531 1.1:-76437550 MS.gene96691:CDS
CTCCAATTGTAATATCAATG+TGG 0.675550 1.1:+76434353 None:intergenic
CAACACCACTGTATCAGCAG+AGG 0.676614 1.1:+76435797 None:intergenic
AAAGGGCTTGAATATCGGCA+TGG 0.678069 1.1:+76435924 None:intergenic
ATAGTTACTAATCATAACTG+TGG 0.682010 1.1:+76435956 None:intergenic
AGGGACGCGTTTCGATAGCA+GGG 0.694015 1.1:-76437667 MS.gene96691:CDS
AAGGTGTAATCAGAGGCCAG+TGG 0.694576 1.1:-76436959 MS.gene96691:CDS
GCATATCTAGAAACAACCAA+AGG 0.695865 1.1:+76437438 None:intergenic
GCGTGGACAAGAAACTCCAG+GGG 0.698903 1.1:-76437466 MS.gene96691:CDS
GTGTCTCAAATGTAGGACCA+GGG 0.699223 1.1:-76437686 MS.gene96691:CDS
AGAGAAGCTTGTGAAAGATG+TGG 0.705643 1.1:-76435703 MS.gene96691:CDS
GGTGTAATCAGAGGCCAGTG+GGG 0.715668 1.1:-76436957 MS.gene96691:CDS
TTGTGGATACCATGTAAATG+GGG 0.746412 1.1:+76434930 None:intergenic
GCAGGTTTAAACATGAACTG+CGG 0.750864 1.1:-76436281 MS.gene96691:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAACTAAGATAAAAACTT+TGG - chr1.1:76436278-76436297 MS.gene96691:CDS 15.0%
!! AAAATAAAAGTTTATGTGTT+TGG + chr1.1:76437245-76437264 None:intergenic 15.0%
!! AAATATGTAAAGATAAATGT+AGG + chr1.1:76436804-76436823 None:intergenic 15.0%
!!! ACAGTGAAAATTTTATTTAT+AGG - chr1.1:76437323-76437342 MS.gene96691:CDS 15.0%
!!! GCTATTATAAATTGATAATT+AGG + chr1.1:76437026-76437045 None:intergenic 15.0%
!!! TTTATCTTAGTTTTTGATAA+AGG + chr1.1:76436273-76436292 None:intergenic 15.0%
!! AAAAAATCAAATGATTGCTT+AGG + chr1.1:76435375-76435394 None:intergenic 20.0%
!! AAAAATCAAATGATTGCTTA+GGG + chr1.1:76435374-76435393 None:intergenic 20.0%
!! GTAAAAATATTTAACACGTT+CGG + chr1.1:76435117-76435136 None:intergenic 20.0%
!! TAGTGAAAGAAATATCAATT+GGG + chr1.1:76436653-76436672 None:intergenic 20.0%
!! TATTGGATTATTAAATGGTA+TGG - chr1.1:76435967-76435986 MS.gene96691:CDS 20.0%
!! TCAACTAAATCCTATATTTA+GGG + chr1.1:76435486-76435505 None:intergenic 20.0%
!! TCTATCATAGTATTTATTAC+AGG - chr1.1:76435600-76435619 MS.gene96691:CDS 20.0%
!! TTAGTGAAAGAAATATCAAT+TGG + chr1.1:76436654-76436673 None:intergenic 20.0%
!! TTGACTAAATTACTAGAATT+TGG - chr1.1:76435502-76435521 MS.gene96691:intron 20.0%
!! TTGATTCATAAAAATCAGTT+TGG - chr1.1:76437059-76437078 MS.gene96691:CDS 20.0%
!!! AAATTTTATTTATAGGTGGT+AGG - chr1.1:76437330-76437349 MS.gene96691:CDS 20.0%
!!! AACATTGATTTTAGTCATAA+TGG - chr1.1:76436620-76436639 MS.gene96691:intron 20.0%
!!! AATGTTTTTTTAACTGTCAT+AGG + chr1.1:76436832-76436851 None:intergenic 20.0%
!!! AATTAGTAGTATTGTTTTAC+AGG - chr1.1:76435557-76435576 MS.gene96691:CDS 20.0%
!!! ATTATTAAGTGGTTTTGAAA+TGG + chr1.1:76437570-76437589 None:intergenic 20.0%
!!! CAAAAAAGTATAAGATATCA+GGG + chr1.1:76435774-76435793 None:intergenic 20.0%
!!! CTAGTTTTAATGAAACATTA+TGG - chr1.1:76434682-76434701 MS.gene96691:CDS 20.0%
!!! GTGAAAATTTTATTTATAGG+TGG - chr1.1:76437326-76437345 MS.gene96691:CDS 20.0%
!!! TCAAAAAAGTATAAGATATC+AGG + chr1.1:76435775-76435794 None:intergenic 20.0%
! AATAAAGTTATGACTGGTAT+TGG - chr1.1:76435950-76435969 MS.gene96691:CDS 25.0%
! AATCCTATCAATTGTTTCAA+TGG + chr1.1:76437752-76437771 None:intergenic 25.0%
! ACTGCAAAAAAAATTCTGAT+TGG - chr1.1:76435922-76435941 MS.gene96691:CDS 25.0%
! ATAGTTACTAATCATAACTG+TGG + chr1.1:76436331-76436350 None:intergenic 25.0%
! ATTACTAGAATTTGGAAAGT+TGG - chr1.1:76435510-76435529 MS.gene96691:intron 25.0%
! CTGCAAAAAAAATTCTGATT+GGG - chr1.1:76435923-76435942 MS.gene96691:CDS 25.0%
! GAAACATTATGGTACAAAAT+GGG - chr1.1:76434693-76434712 MS.gene96691:CDS 25.0%
! GTCAACTAAATCCTATATTT+AGG + chr1.1:76435487-76435506 None:intergenic 25.0%
! TAGTTTATCATAGCTATCAT+AGG + chr1.1:76435449-76435468 None:intergenic 25.0%
! TATCACCATGTAGATATTTA+CGG - chr1.1:76435154-76435173 MS.gene96691:intron 25.0%
! TCAAGGAAGATATTATTAAG+TGG + chr1.1:76437581-76437600 None:intergenic 25.0%
! TGAAACATTATGGTACAAAA+TGG - chr1.1:76434692-76434711 MS.gene96691:CDS 25.0%
! TGTCAAATTCAAACAACTTA+TGG + chr1.1:76437627-76437646 None:intergenic 25.0%
! TTATGTGTTTGGTATAAACT+TGG + chr1.1:76437234-76437253 None:intergenic 25.0%
! TTATTACCTTAGCATCAAAA+TGG + chr1.1:76435004-76435023 None:intergenic 25.0%
! TTTAATAGAAAGCTATACCT+GGG + chr1.1:76436770-76436789 None:intergenic 25.0%
! TTTATTACAGGTTGTAGAAA+AGG - chr1.1:76435612-76435631 MS.gene96691:CDS 25.0%
!! ACTGGTATTGGATTATTAAA+TGG - chr1.1:76435962-76435981 MS.gene96691:CDS 25.0%
!! TGTTTATATTTGAGACCATA+AGG + chr1.1:76437191-76437210 None:intergenic 25.0%
!!! TACAATTCGGTTTTATGTAA+AGG - chr1.1:76437092-76437111 MS.gene96691:CDS 25.0%
!!! TATGATGTTGATAATTGGAA+AGG - chr1.1:76434966-76434985 MS.gene96691:intron 25.0%
AAAAATCAAACGATGACGAA+TGG + chr1.1:76436951-76436970 None:intergenic 30.0%
AATATCAGTAGAAATTTCCC+TGG - chr1.1:76437422-76437441 MS.gene96691:CDS 30.0%
AATCTCCGTAAATATCTACA+TGG + chr1.1:76435162-76435181 None:intergenic 30.0%
ACGCAGTTGAAAATTTGAAA+CGG - chr1.1:76435676-76435695 MS.gene96691:CDS 30.0%
AGGGAAATTTCTACTGATAT+TGG + chr1.1:76437423-76437442 None:intergenic 30.0%
ATAAAAACTTTGGCTGTGAT+TGG - chr1.1:76436288-76436307 MS.gene96691:intron 30.0%
ATTGTGGATACCATGTAAAT+GGG + chr1.1:76437358-76437377 None:intergenic 30.0%
CAAATTCAAACAACTTATGG+TGG + chr1.1:76437624-76437643 None:intergenic 30.0%
CACCACATTGATATTACAAT+TGG - chr1.1:76437929-76437948 MS.gene96691:CDS 30.0%
CACTAAAGAAAATCAGCAAT+TGG - chr1.1:76436191-76436210 MS.gene96691:CDS 30.0%
CATAGCTATCATAGGTATAA+AGG + chr1.1:76435441-76435460 None:intergenic 30.0%
CATTGATATTACAATTGGAG+AGG - chr1.1:76437934-76437953 MS.gene96691:CDS 30.0%
CTATCTTAGTCCCTAAATAT+AGG - chr1.1:76435473-76435492 MS.gene96691:intron 30.0%
CTCCAATTGTAATATCAATG+TGG + chr1.1:76437934-76437953 None:intergenic 30.0%
GAAACGGTGTCTTATAAAAA+GGG - chr1.1:76435692-76435711 MS.gene96691:CDS 30.0%
GACTAAAATCAATGTTCCTT+TGG + chr1.1:76436616-76436635 None:intergenic 30.0%
GGAAGAAATAAAGTTATGAC+TGG - chr1.1:76435944-76435963 MS.gene96691:CDS 30.0%
GTGTCTTATAAAAAGGGATA+AGG - chr1.1:76435698-76435717 MS.gene96691:CDS 30.0%
GTTATGATTAGTAACTATGC+TGG - chr1.1:76436333-76436352 MS.gene96691:intron 30.0%
GTTCCATTGAAACAATTGAT+AGG - chr1.1:76437746-76437765 MS.gene96691:CDS 30.0%
GTTTAATAGAAAGCTATACC+TGG + chr1.1:76436771-76436790 None:intergenic 30.0%
TAATGTTACCACATACCTTA+TGG - chr1.1:76437173-76437192 MS.gene96691:intron 30.0%
TATCAATTGCTTGATCATCA+AGG + chr1.1:76437598-76437617 None:intergenic 30.0%
TATGCTGTAAATTATGTTCG+TGG - chr1.1:76434864-76434883 MS.gene96691:CDS 30.0%
TCCAAATATTACTTGTGCTA+TGG + chr1.1:76436739-76436758 None:intergenic 30.0%
TCTACATGGTGATATATGAT+TGG + chr1.1:76435148-76435167 None:intergenic 30.0%
TGAAACGGTGTCTTATAAAA+AGG - chr1.1:76435691-76435710 MS.gene96691:CDS 30.0%
TGGCAGCATATTAAATTTCA+TGG + chr1.1:76435043-76435062 None:intergenic 30.0%
TGGTTCGAAAAACTACAATT+CGG - chr1.1:76437079-76437098 MS.gene96691:CDS 30.0%
TGTCATGTGCTCATATAATA+GGG - chr1.1:76435263-76435282 MS.gene96691:intron 30.0%
TTCTGGATCATTATAGTAGA+AGG + chr1.1:76437539-76437558 None:intergenic 30.0%
! AATTTTCACTGTTAGTCCAA+AGG + chr1.1:76437315-76437334 None:intergenic 30.0%
! ACTAAAAGTGTAAGCAACAT+AGG - chr1.1:76436669-76436688 MS.gene96691:intron 30.0%
! AGAACATACAGGTTTTACAA+TGG - chr1.1:76437446-76437465 MS.gene96691:CDS 30.0%
! ATTTGAAAGAGCACAAGTTA+AGG - chr1.1:76437769-76437788 MS.gene96691:CDS 30.0%
! CTCTAACATTCGATTTGATT+TGG - chr1.1:76436978-76436997 MS.gene96691:CDS 30.0%
! GAACATACAGGTTTTACAAT+GGG - chr1.1:76437447-76437466 MS.gene96691:CDS 30.0%
! GTTTTGCTTGAAAACAACAA+AGG - chr1.1:76436240-76436259 MS.gene96691:CDS 30.0%
! TCCAATTGCTTATGCATTTT+TGG + chr1.1:76435063-76435082 None:intergenic 30.0%
! TTAAGTTAGCTTGACATGTA+AGG + chr1.1:76435400-76435419 None:intergenic 30.0%
! TTATATTTGAGACTTGAGAC+CGG - chr1.1:76437267-76437286 MS.gene96691:intron 30.0%
! TTGAAATGGATGTGTTTTTC+TGG + chr1.1:76437556-76437575 None:intergenic 30.0%
!! CTAAGTAATGTTGATAGTGA+TGG - chr1.1:76437839-76437858 MS.gene96691:CDS 30.0%
!! CTGCTTATGATGTTGATAAT+TGG - chr1.1:76434961-76434980 MS.gene96691:intron 30.0%
!! GCATGTTTTTGACTAGTAAT+TGG + chr1.1:76434387-76434406 None:intergenic 30.0%
!! GGTTTTATGTAAAGGTAGTT+CGG - chr1.1:76437100-76437119 MS.gene96691:intron 30.0%
!!! AATGGAAAGTTGCTAGTTTT+AGG + chr1.1:76434426-76434445 None:intergenic 30.0%
AAAACCTGTATGTTCTTCCA+GGG + chr1.1:76437442-76437461 None:intergenic 35.0%
AAAGTGTAAGCAACATAGGA+GGG - chr1.1:76436673-76436692 MS.gene96691:intron 35.0%
AAGCAAGTGCTAAAGATGAT+AGG - chr1.1:76434907-76434926 MS.gene96691:CDS 35.0%
ACCAATCTATAGAAGCAGAA+GGG - chr1.1:76436523-76436542 MS.gene96691:intron 35.0%
ACTTCTGTAGTCCTTGTAAA+GGG + chr1.1:76436380-76436399 None:intergenic 35.0%
ACTTGATCGACATATGATTG+TGG + chr1.1:76437374-76437393 None:intergenic 35.0%
AGCTATGTACAATGTGGATT+TGG - chr1.1:76434740-76434759 MS.gene96691:CDS 35.0%
ATATTATGGGTAGGTTATCC+TGG - chr1.1:76436696-76436715 MS.gene96691:intron 35.0%
ATATTTGGAGACTATAACCC+AGG - chr1.1:76436750-76436769 MS.gene96691:intron 35.0%
ATCCATAGCCAAATTCATAG+AGG + chr1.1:76437478-76437497 None:intergenic 35.0%
CAAAAACATGCATGTGACAA+AGG - chr1.1:76434396-76434415 MS.gene96691:CDS 35.0%
CAAATTGAACCAAAGCAAAC+CGG + chr1.1:76436924-76436943 None:intergenic 35.0%
CAACATAGGAGGGATATTAT+GGG - chr1.1:76436683-76436702 MS.gene96691:intron 35.0%
CGAACTTAACTAAACCAATC+CGG - chr1.1:76436902-76436921 MS.gene96691:intron 35.0%
CGCGAAAAACATTCACATTA+GGG + chr1.1:76434785-76434804 None:intergenic 35.0%
CTTGTAAAGGGCTTGAATAT+CGG + chr1.1:76436368-76436387 None:intergenic 35.0%
GACTATGTAGTTGTATACCA+GGG + chr1.1:76436100-76436119 None:intergenic 35.0%
GATTGTGGATACCATGTAAA+TGG + chr1.1:76437359-76437378 None:intergenic 35.0%
GCATATCTAGAAACAACCAA+AGG + chr1.1:76434849-76434868 None:intergenic 35.0%
GCCAAAAATGCATAAGCAAT+TGG - chr1.1:76435059-76435078 MS.gene96691:intron 35.0%
GCCATAGCACAAGTAATATT+TGG - chr1.1:76436735-76436754 MS.gene96691:intron 35.0%
GTGTCATGTGCTCATATAAT+AGG - chr1.1:76435262-76435281 MS.gene96691:intron 35.0%
GTTACTAATCATAACTGTGG+TGG + chr1.1:76436328-76436347 None:intergenic 35.0%
TAAAACCTGTATGTTCTTCC+AGG + chr1.1:76437443-76437462 None:intergenic 35.0%
TACATAGTCCTAATGAGACT+TGG - chr1.1:76436111-76436130 MS.gene96691:CDS 35.0%
TACTTCTGTAGTCCTTGTAA+AGG + chr1.1:76436381-76436400 None:intergenic 35.0%
TAGTGATGGTAAACGAAAGT+TGG - chr1.1:76437853-76437872 MS.gene96691:CDS 35.0%
TATGGTCTCATATATCATGC+AGG - chr1.1:76435985-76436004 MS.gene96691:CDS 35.0%
TCCATAGCCAAATTCATAGA+GGG + chr1.1:76437477-76437496 None:intergenic 35.0%
TCGCGAAAAACATTCACATT+AGG + chr1.1:76434786-76434805 None:intergenic 35.0%
TCTTTAGTGCATACATCAGA+TGG + chr1.1:76436180-76436199 None:intergenic 35.0%
TGCTAAAGATGATAGGCTTA+AGG - chr1.1:76434914-76434933 MS.gene96691:CDS 35.0%
TGCTCATATAATAGGGTGAA+TGG - chr1.1:76435270-76435289 MS.gene96691:intron 35.0%
TTGCAAATGGAAGTGACTTT+GGG + chr1.1:76436149-76436168 None:intergenic 35.0%
TTGTGGATACCATGTAAATG+GGG + chr1.1:76437357-76437376 None:intergenic 35.0%
TTTGCAAATGGAAGTGACTT+TGG + chr1.1:76436150-76436169 None:intergenic 35.0%
! AAAAGTGTAAGCAACATAGG+AGG - chr1.1:76436672-76436691 MS.gene96691:intron 35.0%
! AAAGAGCACAAGTTAAGGTT+GGG - chr1.1:76437774-76437793 MS.gene96691:CDS 35.0%
! AAGAACAATGGACCTTTTGA+TGG - chr1.1:76437668-76437687 MS.gene96691:CDS 35.0%
! ATATTTACGGAGATTTTCGC+AGG - chr1.1:76435167-76435186 MS.gene96691:intron 35.0%
! ATTTGAGACCATAAGGTATG+TGG + chr1.1:76437184-76437203 None:intergenic 35.0%
! TTGACATTTTCGCTTGTGAT+TGG - chr1.1:76437641-76437660 MS.gene96691:CDS 35.0%
!! ATAATTGGAAAGGCGTTGAT+CGG - chr1.1:76434976-76434995 MS.gene96691:intron 35.0%
!! ATTTTAGTCATAATGGCAGC+AGG - chr1.1:76436627-76436646 MS.gene96691:intron 35.0%
!! GATAGTGAAGTGTTGCAAAA+TGG + chr1.1:76434444-76434463 None:intergenic 35.0%
!! TCATGTGGTGTTAGTGTTTT+TGG - chr1.1:76437694-76437713 MS.gene96691:CDS 35.0%
!!! ATTTGGCTGGTTTGACATTT+TGG - chr1.1:76434757-76434776 MS.gene96691:CDS 35.0%
AACACACAGCTCTTAAATGG+AGG + chr1.1:76435225-76435244 None:intergenic 40.0%
ACAAGCTTCTCTTGAAATCC+AGG + chr1.1:76436573-76436592 None:intergenic 40.0%
ACCACATGAGATCCATCAAA+AGG + chr1.1:76437683-76437702 None:intergenic 40.0%
AGAGAAGCTTGTGAAAGATG+TGG - chr1.1:76436581-76436600 MS.gene96691:intron 40.0%
AGCTAGAGCTATGTACAATG+TGG - chr1.1:76434734-76434753 MS.gene96691:CDS 40.0%
ATAGGAGGGATATTATGGGT+AGG - chr1.1:76436687-76436706 MS.gene96691:intron 40.0%
ATCTTATGAAACCAGAGCCA+AGG - chr1.1:76434461-76434480 MS.gene96691:CDS 40.0%
ATGTACAATGTGGATTTGGC+TGG - chr1.1:76434744-76434763 MS.gene96691:CDS 40.0%
ATTTAAGAGCTGTGTGTTGG+AGG - chr1.1:76435227-76435246 MS.gene96691:intron 40.0%
ATTTCCCTGGAAGAACATAC+AGG - chr1.1:76437435-76437454 MS.gene96691:CDS 40.0%
CAAAGAAGCCAAGTCTCATT+AGG + chr1.1:76436122-76436141 None:intergenic 40.0%
CAACTAGTAAACCCTTCTAC+CGG - chr1.1:76434522-76434541 MS.gene96691:CDS 40.0%
CGATATTCAAGCCCTTTACA+AGG - chr1.1:76436366-76436385 MS.gene96691:intron 40.0%
CTCATGTTCATGTCTGTCAT+TGG + chr1.1:76437398-76437417 None:intergenic 40.0%
CTTCATGGTGTCTCAAATGT+AGG - chr1.1:76434591-76434610 MS.gene96691:CDS 40.0%
GACCAATCTATAGAAGCAGA+AGG - chr1.1:76436522-76436541 MS.gene96691:intron 40.0%
GCAACATAGGAGGGATATTA+TGG - chr1.1:76436682-76436701 MS.gene96691:intron 40.0%
GCAGGTTTAAACATGAACTG+CGG - chr1.1:76436003-76436022 MS.gene96691:CDS 40.0%
GGACTATGTAGTTGTATACC+AGG + chr1.1:76436101-76436120 None:intergenic 40.0%
GGGAAATCCCTCTATGAATT+TGG - chr1.1:76437467-76437486 MS.gene96691:CDS 40.0%
GTGATTGGTGTGAAGAACAA+TGG - chr1.1:76437656-76437675 MS.gene96691:CDS 40.0%
TATGTTTGCACTGCATCCTT+TGG - chr1.1:76437296-76437315 MS.gene96691:CDS 40.0%
TCACTTCCATTTGCAAACCT+TGG - chr1.1:76436153-76436172 MS.gene96691:CDS 40.0%
TCCAACACACAGCTCTTAAA+TGG + chr1.1:76435228-76435247 None:intergenic 40.0%
TCCATTTAAGAGCTGTGTGT+TGG - chr1.1:76435224-76435243 MS.gene96691:intron 40.0%
TCCCTCTATGAATTTGGCTA+TGG - chr1.1:76437473-76437492 MS.gene96691:CDS 40.0%
TGTTTCAGACTGTGATTCAG+TGG - chr1.1:76435805-76435824 MS.gene96691:CDS 40.0%
TTTAAGAGCTGTGTGTTGGA+GGG - chr1.1:76435228-76435247 MS.gene96691:intron 40.0%
! AGAGTTAACTTGACATTGCC+TGG - chr1.1:76436552-76436571 MS.gene96691:intron 40.0%
! GAAAGAGCACAAGTTAAGGT+TGG - chr1.1:76437773-76437792 MS.gene96691:CDS 40.0%
! TAAACCAATCCGGTTTGCTT+TGG - chr1.1:76436912-76436931 MS.gene96691:intron 40.0%
! TCTTTTTGCAGCAGCAGTTA+AGG - chr1.1:76436458-76436477 MS.gene96691:CDS 40.0%
! TGAATGTTTTTCGCGATCCA+AGG - chr1.1:76434790-76434809 MS.gene96691:CDS 40.0%
! TTGGTGTTCCTGCTTATGAA+TGG - chr1.1:76434556-76434575 MS.gene96691:CDS 40.0%
!! ACCTTTTGATGGATCTCATG+TGG - chr1.1:76437679-76437698 MS.gene96691:CDS 40.0%
!! GGTAAACGAAAGTTGGTGAT+TGG - chr1.1:76437860-76437879 MS.gene96691:CDS 40.0%
!! TCGGTTCCATTTTGATGCTA+AGG - chr1.1:76434995-76435014 MS.gene96691:intron 40.0%
AAAGACTCCTGAAGATGCAG+TGG - chr1.1:76435856-76435875 MS.gene96691:CDS 45.0%
AAAGGGCTTGAATATCGGCA+TGG + chr1.1:76436363-76436382 None:intergenic 45.0%
AACACCAAGCCTTGAAATGC+CGG + chr1.1:76434544-76434563 None:intergenic 45.0%
ACTGTGGTGGCATTTGCATT+TGG + chr1.1:76436315-76436334 None:intergenic 45.0%
AGAAGGAGCAGATGCTATGT+GGG + chr1.1:76437522-76437541 None:intergenic 45.0%
ATCTATAGAAGCAGAAGGGC+TGG - chr1.1:76436527-76436546 MS.gene96691:intron 45.0%
ATCTATTGTAGACCAAGCCC+TGG - chr1.1:76436080-76436099 MS.gene96691:CDS 45.0%
ATTACACCTTGGAGAAGGTC+TGG + chr1.1:76435315-76435334 None:intergenic 45.0%
CAGTGCAAACATAACTCCTC+CGG + chr1.1:76437289-76437308 None:intergenic 45.0%
CTCTGATTACACCTTGGAGA+AGG + chr1.1:76435320-76435339 None:intergenic 45.0%
CTTCTCCAAGGTGTAATCAG+AGG - chr1.1:76435318-76435337 MS.gene96691:intron 45.0%
GATGGTCCAAGGTTTGCAAA+TGG + chr1.1:76436162-76436181 None:intergenic 45.0%
GATTGGACAGCACACTATTC+TGG - chr1.1:76437877-76437896 MS.gene96691:CDS 45.0%
GCCCTTCTGCTTCTATAGAT+TGG + chr1.1:76436527-76436546 None:intergenic 45.0%
GTAGGTTATCCTGGTCAAGA+TGG - chr1.1:76436705-76436724 MS.gene96691:intron 45.0%
GTGTCTCAAATGTAGGACCA+GGG - chr1.1:76434598-76434617 MS.gene96691:CDS 45.0%
GTGTTCCTGCTTATGAATGG+TGG - chr1.1:76434559-76434578 MS.gene96691:CDS 45.0%
TAAGCGTGACACTAAGTCCT+TGG + chr1.1:76434481-76434500 None:intergenic 45.0%
TAGAAGGAGCAGATGCTATG+TGG + chr1.1:76437523-76437542 None:intergenic 45.0%
TCTGACCACCATTCATAAGC+AGG + chr1.1:76434567-76434586 None:intergenic 45.0%
TCTTCAGTAACTTACGCGCA+TGG - chr1.1:76436405-76436424 MS.gene96691:intron 45.0%
TGAACCAAAGCAAACCGGAT+TGG + chr1.1:76436919-76436938 None:intergenic 45.0%
TGCATACATCAGATGGTCCA+AGG + chr1.1:76436173-76436192 None:intergenic 45.0%
TGCTATGTGGGTAGAGAATG+TGG + chr1.1:76437510-76437529 None:intergenic 45.0%
TGCTTATGAATGGTGGTCAG+AGG - chr1.1:76434566-76434585 MS.gene96691:CDS 45.0%
TGTAGTTGTATACCAGGGCT+TGG + chr1.1:76436095-76436114 None:intergenic 45.0%
! AACGAACCTTCATACCGGTT+CGG - chr1.1:76437139-76437158 MS.gene96691:intron 45.0%
! ATGTTTTTCGCGATCCAAGG+TGG - chr1.1:76434793-76434812 MS.gene96691:CDS 45.0%
! GTTCGTGGACTACAAGAAGT+TGG - chr1.1:76434879-76434898 MS.gene96691:CDS 45.0%
! TATTTGAGACTTGAGACCGG+AGG - chr1.1:76437270-76437289 MS.gene96691:intron 45.0%
! TGTTTTTCGCGATCCAAGGT+GGG - chr1.1:76434794-76434813 MS.gene96691:CDS 45.0%
! TTTTGCAGCAGCAGTTAAGG+CGG - chr1.1:76436461-76436480 MS.gene96691:CDS 45.0%
!! AGTGGTGTTGGTTGTTGGAT+TGG - chr1.1:76436500-76436519 MS.gene96691:intron 45.0%
!! GATACAGTGGTGTTGGTTGT+TGG - chr1.1:76436495-76436514 MS.gene96691:intron 45.0%
AACTCCAGGGGAAGATCCTT+TGG - chr1.1:76434830-76434849 MS.gene96691:CDS 50.0%
AAGGTGTAATCAGAGGCCAG+TGG - chr1.1:76435325-76435344 MS.gene96691:intron 50.0%
ACAACCAAAGGATCTTCCCC+TGG + chr1.1:76434837-76434856 None:intergenic 50.0%
ACCCTTCTACCGGCATTTCA+AGG - chr1.1:76434532-76434551 MS.gene96691:CDS 50.0%
AGCCTTGAAATGCCGGTAGA+AGG + chr1.1:76434537-76434556 None:intergenic 50.0%
AGGTCTGGATCAGCACATGT+AGG + chr1.1:76435300-76435319 None:intergenic 50.0%
AGGTGTAATCAGAGGCCAGT+GGG - chr1.1:76435326-76435345 MS.gene96691:intron 50.0%
CAACACCACTGTATCAGCAG+AGG + chr1.1:76436490-76436509 None:intergenic 50.0%
CCAAGTTCAGAAGTGGTGAG+TGG - chr1.1:76437722-76437741 MS.gene96691:CDS 50.0%
CCACTCACCACTTCTGAACT+TGG + chr1.1:76437725-76437744 None:intergenic 50.0%
CGGTATGAAGGTTCGTTCAC+CGG + chr1.1:76437136-76437155 None:intergenic 50.0%
CGGTGAACGAACCTTCATAC+CGG - chr1.1:76437134-76437153 MS.gene96691:intron 50.0%
CTCACCACTTCTGAACTTGG+TGG + chr1.1:76437722-76437741 None:intergenic 50.0%
CTCTGCTGATACAGTGGTGT+TGG - chr1.1:76436488-76436507 MS.gene96691:CDS 50.0%
GCAGCTGATAGTATCACTGC+TGG + chr1.1:76434663-76434682 None:intergenic 50.0%
GCAGGTGACAAAGCAAGACT+TGG - chr1.1:76435185-76435204 MS.gene96691:intron 50.0%
GCATTTCCTCCATCTTGACC+AGG + chr1.1:76436717-76436736 None:intergenic 50.0%
GCCTTGAAATGCCGGTAGAA+GGG + chr1.1:76434536-76434555 None:intergenic 50.0%
GGACAGCACACTATTCTGGT+TGG - chr1.1:76437881-76437900 MS.gene96691:CDS 50.0%
GGTGACAAAGCAAGACTTGG+AGG - chr1.1:76435188-76435207 MS.gene96691:intron 50.0%
GGTGTCTCAAATGTAGGACC+AGG - chr1.1:76434597-76434616 MS.gene96691:CDS 50.0%
GGTTATCCTGGTCAAGATGG+AGG - chr1.1:76436708-76436727 MS.gene96691:intron 50.0%
GTAGTTCGGAACCACAGAAC+CGG - chr1.1:76437114-76437133 MS.gene96691:intron 50.0%
GTGGTAGGTCCCCATTTACA+TGG - chr1.1:76437345-76437364 MS.gene96691:CDS 50.0%
TCTACCGGCATTTCAAGGCT+TGG - chr1.1:76434537-76434556 MS.gene96691:CDS 50.0%
TGACACTAAGTCCTTGGCTC+TGG + chr1.1:76434475-76434494 None:intergenic 50.0%
TTATTACCGTCGTCCCGAAC+CGG + chr1.1:76437156-76437175 None:intergenic 50.0%
! ACTGGCCTCTGATTACACCT+TGG + chr1.1:76435326-76435345 None:intergenic 50.0%
! GTTTTTCGCGATCCAAGGTG+GGG - chr1.1:76434795-76434814 MS.gene96691:CDS 50.0%
! TTTTTCGCGATCCAAGGTGG+GGG - chr1.1:76434796-76434815 MS.gene96691:CDS 50.0%
!! ACGAACCTTCATACCGGTTC+GGG - chr1.1:76437140-76437159 MS.gene96691:intron 50.0%
AGGGACGCGTTTCGATAGCA+GGG - chr1.1:76434617-76434636 MS.gene96691:CDS 55.0%
CAAACCCATCTAGACCCCAC+TGG + chr1.1:76435344-76435363 None:intergenic 55.0%
GATGTGGCTGCTGCTACCAA+AGG - chr1.1:76436597-76436616 MS.gene96691:intron 55.0%
GCAAGAGCCACTGCATCTTC+AGG + chr1.1:76435866-76435885 None:intergenic 55.0%
GCGTGGACAAGAAACTCCAG+GGG - chr1.1:76434818-76434837 MS.gene96691:CDS 55.0%
GCTGATCCAGACCTTCTCCA+AGG - chr1.1:76435306-76435325 MS.gene96691:intron 55.0%
GCTGGAAAGCTAGTAGCACC+AGG + chr1.1:76434645-76434664 None:intergenic 55.0%
GGAGCCACCAAGTTCAGAAG+TGG - chr1.1:76437715-76437734 MS.gene96691:CDS 55.0%
GGCGTGGACAAGAAACTCCA+GGG - chr1.1:76434817-76434836 MS.gene96691:CDS 55.0%
GGTGTAATCAGAGGCCAGTG+GGG - chr1.1:76435327-76435346 MS.gene96691:intron 55.0%
GTGGCTCTTGCACTGAAAGC+AGG - chr1.1:76435875-76435894 MS.gene96691:CDS 55.0%
! CGTTTCGATAGCAGGGTACC+TGG - chr1.1:76434624-76434643 MS.gene96691:CDS 55.0%
!! AGGTTCGTTCACCGGTTCTG+TGG + chr1.1:76437128-76437147 None:intergenic 55.0%
!! GCTCTAGAAGCTGCGAAGCA+AGG - chr1.1:76436213-76436232 MS.gene96691:CDS 55.0%
!! TGGTGGTCAGAGGCACTTCA+TGG - chr1.1:76434576-76434595 MS.gene96691:CDS 55.0%
!! TTCATACCGGTTCGGGACGA+CGG - chr1.1:76437147-76437166 MS.gene96691:intron 55.0%
AGAGGCCAGTGGGGTCTAGA+TGG - chr1.1:76435336-76435355 MS.gene96691:intron 60.0%
CAGGGACGCGTTTCGATAGC+AGG - chr1.1:76434616-76434635 MS.gene96691:CDS 60.0%
CTGCTATCGAAACGCGTCCC+TGG + chr1.1:76434618-76434637 None:intergenic 60.0%
GAGGCCAGTGGGGTCTAGAT+GGG - chr1.1:76435337-76435356 MS.gene96691:intron 60.0%
GGCAGCCTCTGCTGATACAG+TGG - chr1.1:76436482-76436501 MS.gene96691:CDS 60.0%
GGGCGTGGACAAGAAACTCC+AGG - chr1.1:76434816-76434835 MS.gene96691:CDS 60.0%
GTCGTCCCGAACCGGTATGA+AGG + chr1.1:76437148-76437167 None:intergenic 60.0%
TCTTGTCCACGCCCCCACCT+TGG + chr1.1:76434810-76434829 None:intergenic 65.0%
CGCGATCCAAGGTGGGGGCG+TGG - chr1.1:76434801-76434820 MS.gene96691:CDS 75.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 76434333 76437973 76434333 ID=MS.gene96691
chr1.1 mRNA 76434333 76437973 76434333 ID=MS.gene96691.t1;Parent=MS.gene96691
chr1.1 exon 76437290 76437973 76437290 ID=MS.gene96691.t1.exon1;Parent=MS.gene96691.t1
chr1.1 CDS 76437290 76437973 76437290 ID=cds.MS.gene96691.t1;Parent=MS.gene96691.t1
chr1.1 exon 76436948 76437117 76436948 ID=MS.gene96691.t1.exon2;Parent=MS.gene96691.t1
chr1.1 CDS 76436948 76437117 76436948 ID=cds.MS.gene96691.t1;Parent=MS.gene96691.t1
chr1.1 exon 76436410 76436507 76436410 ID=MS.gene96691.t1.exon3;Parent=MS.gene96691.t1
chr1.1 CDS 76436410 76436507 76436410 ID=cds.MS.gene96691.t1;Parent=MS.gene96691.t1
chr1.1 exon 76435535 76436299 76435535 ID=MS.gene96691.t1.exon4;Parent=MS.gene96691.t1
chr1.1 CDS 76435535 76436299 76435535 ID=cds.MS.gene96691.t1;Parent=MS.gene96691.t1
chr1.1 exon 76434333 76434961 76434333 ID=MS.gene96691.t1.exon5;Parent=MS.gene96691.t1
chr1.1 CDS 76434333 76434961 76434333 ID=cds.MS.gene96691.t1;Parent=MS.gene96691.t1
Gene Sequence

>MS.gene96691

ATGAAAAATCATCTTTTGTTCACATGTATTTTCTTTTCATTTTTGATACATCCAATTACTAGTCAAAAACATGCATGTGACAAAGGCTCTCCTAAAACTAGCAACTTTCCATTTTGCAACACTTCACTATCTTATGAAACCAGAGCCAAGGACTTAGTGTCACGCTTAACACTTCAAGAAAAAGCACAACAACTAGTAAACCCTTCTACCGGCATTTCAAGGCTTGGTGTTCCTGCTTATGAATGGTGGTCAGAGGCACTTCATGGTGTCTCAAATGTAGGACCAGGGACGCGTTTCGATAGCAGGGTACCTGGTGCTACTAGCTTTCCAGCAGTGATACTATCAGCTGCTAGTTTTAATGAAACATTATGGTACAAAATGGGACAAGTTGTGTCAAATGAAGCTAGAGCTATGTACAATGTGGATTTGGCTGGTTTGACATTTTGGAGCCCTAATGTGAATGTTTTTCGCGATCCAAGGTGGGGGCGTGGACAAGAAACTCCAGGGGAAGATCCTTTGGTTGTTTCTAGATATGCTGTAAATTATGTTCGTGGACTACAAGAAGTTGGTGATGAAGCAAGTGCTAAAGATGATAGGCTTAAGGTTTCTAGCTGTTGTAAGCATTATACTGCTTATGATGTTGATAATTGGAAAGGCGTTGATCGGTTCCATTTTGATGCTAAGGTAATAAAGATAACAAAATTAGACCATGAAATTTAATATGCTGCCAAAAATGCATAAGCAATTGGATCATGATGAGAGAATAATTTAATGACTATCACCGAACGTGTTAAATATTTTTACAACTGCATCCAATCATATATCACCATGTAGATATTTACGGAGATTTTCGCAGGTGACAAAGCAAGACTTGGAGGATACTTATCAGCCTCCATTTAAGAGCTGTGTGTTGGAGGGACATGTTAGCAGTGTCATGTGCTCATATAATAGGGTGAATGGAATTCCTACATGTGCTGATCCAGACCTTCTCCAAGGTGTAATCAGAGGCCAGTGGGGTCTAGATGGGTTTGTCTCTATCCCTAAGCAATCATTTGATTTTTTTTCCTTACATGTCAAGCTAACTTAAACACTAAAGCAATTTATACCTTTATACCTATGATAGCTATGATAAACTACATACTATCTTAGTCCCTAAATATAGGATTTAGTTGACTAAATTACTAGAATTTGGAAAGTTGGTATAGCAGTATGAAATTTGTTAAGAATTAGTAGTATTGTTTTACAGGAAAGACAACTAATTTATATTTCTATCATAGTATTTATTACAGGTTGTAGAAAAGGATGTAACGTAATTAAGAGTATGTTGATAAAAATAATAATTAACGCAGTTGAAAATTTGAAACGGTGTCTTATAAAAAGGGATAAGGAAAAATCTCAACATAATCTTATATTTAGAGACAGATAACTAAAAGAAGCTCCCTGATATCTTATACTTTTTTGAACAGATATATTGTTTCAGACTGTGATTCAGTGGAAGTTTATTACGACTCAATTCATTACACAAAGACTCCTGAAGATGCAGTGGCTCTTGCACTGAAAGCAGGTAATCACGTAGAACTGAAGTTGAAACTGCAAAAAAAATTCTGATTGGGAAGAAATAAAGTTATGACTGGTATTGGATTATTAAATGGTATGGTCTCATATATCATGCAGGTTTAAACATGAACTGCGGCGACTTTCTTAAAAAGTACACTGCAAATGCTGTAAACTTGAAGAAAGTAGATGTATCTATTGTAGACCAAGCCCTGGTATACAACTACATAGTCCTAATGAGACTTGGCTTCTTTGAAAACCCAAAGTCACTTCCATTTGCAAACCTTGGACCATCTGATGTATGCACTAAAGAAAATCAGCAATTGGCTCTAGAAGCTGCGAAGCAAGGAATAGTTTTGCTTGAAAACAACAAAGGAGCTCTTCCTTTATCAAAAACTAAGATAAAAACTTTGGCTGTGATTGGACCAAATGCAAATGCCACCACAGTTATGATTAGTAACTATGCTGGCATACCATGCCGATATTCAAGCCCTTTACAAGGACTACAGAAGTACATTTCTTCAGTAACTTACGCGCATGGTTGCAGTGATGTTAAATGCAGTAATCAGAATCTTTTTGCAGCAGCAGTTAAGGCGGCAGCCTCTGCTGATACAGTGGTGTTGGTTGTTGGATTGGACCAATCTATAGAAGCAGAAGGGCTGGATAGAGTTAACTTGACATTGCCTGGATTTCAAGAGAAGCTTGTGAAAGATGTGGCTGCTGCTACCAAAGGAACATTGATTTTAGTCATAATGGCAGCAGGCCCAATTGATATTTCTTTCACTAAAAGTGTAAGCAACATAGGAGGGATATTATGGGTAGGTTATCCTGGTCAAGATGGAGGAAATGCCATAGCACAAGTAATATTTGGAGACTATAACCCAGGTATAGCTTTCTATTAAACTATTAAAATACCTACATTTATCTTTACATATTTTGTTACCTATGACAGTTAAAAAAACATTAATTGATCTGTTAAACTGAACTGAAAAATATGAAATGTGCTGATAGTTCACGAACTTAACTAAACCAATCCGGTTTGCTTTGGTTCAATTTGTGAACCATTCGTCATCGTTTGATTTTTTAAACAACTCTAACATTCGATTTGATTTGGTTTTTGATATTTTTTCAATAATCCTAATTATCAATTTATAATAGCAATTCGACGTACTTTGATTCATAAAAATCAGTTTGGTTCGAAAAACTACAATTCGGTTTTATGTAAAGGTAGTTCGGAACCACAGAACCGGTGAACGAACCTTCATACCGGTTCGGGACGACGGTAATAATGTTACCACATACCTTATGGTCTCAAATATAAACAAACAAGTCTACACATTTAATCCAAGTTTATACCAAACACATAAACTTTTATTTTTCTTATATTTGAGACTTGAGACCGGAGGAGTTATGTTTGCACTGCATCCTTTGGACTAACAGTGAAAATTTTATTTATAGGTGGTAGGTCCCCATTTACATGGTATCCACAATCATATGTCGATCAAGTTCCAATGACAGACATGAACATGAGAGCCAATATCAGTAGAAATTTCCCTGGAAGAACATACAGGTTTTACAATGGGAAATCCCTCTATGAATTTGGCTATGGATTAAGCTACTCCACATTCTCTACCCACATAGCATCTGCTCCTTCTACTATAATGATCCAGAAAAACACATCCATTTCAAAACCACTTAATAATATCTTCCTTGATGATCAAGCAATTGATATTTCCACCATAAGTTGTTTGAATTTGACATTTTCGCTTGTGATTGGTGTGAAGAACAATGGACCTTTTGATGGATCTCATGTGGTGTTAGTGTTTTTGGAGCCACCAAGTTCAGAAGTGGTGAGTGGTGTTCCATTGAAACAATTGATAGGATTTGAAAGAGCACAAGTTAAGGTTGGGATGACAGAGTTTGTGACAGTGAAAATTGATATATGCAAATTGCTAAGTAATGTTGATAGTGATGGTAAACGAAAGTTGGTGATTGGACAGCACACTATTCTGGTTGGAGCTTCTAGCGAAAAACAAGTTACACACCACATTGATATTACAATTGGAGAGGAATTTATGTCTGAGTGA
Protein sequence

>MS.gene96691.t1

MKNHLLFTCIFFSFLIHPITSQKHACDKGSPKTSNFPFCNTSLSYETRAKDLVSRLTLQEKAQQLVNPSTGISRLGVPAYEWWSEALHGVSNVGPGTRFDSRVPGATSFPAVILSAASFNETLWYKMGQVVSNEARAMYNVDLAGLTFWSPNVNVFRDPRWGRGQETPGEDPLVVSRYAVNYVRGLQEVGDEASAKDDRLKVSSCCKHYTAYDVDNWKGVDRFHFDAKVTKQDLEDTYQPPFKSCVLEGHVSSVMCSYNRVNGIPTCADPDLLQGVIRGQWGLDGYIVSDCDSVEVYYDSIHYTKTPEDAVALALKAGLNMNCGDFLKKYTANAVNLKKVDVSIVDQALVYNYIVLMRLGFFENPKSLPFANLGPSDVCTKENQQLALEAAKQGIVLLENNKGALPLSKTKIKTLAVIGPNANATTVMISNYAGIPCRYSSPLQGLQKYISSVTYAHGCSDVKCSNQNLFAAAVKAAASADTVVLVVGLDQSIEAEGLDRVNLTLPGFQEKLVKDVAAATKGTLILVIMAAGPIDISFTKSVSNIGGILWVGYPGQDGGNAIAQVIFGDYNPGGRSPFTWYPQSYVDQVPMTDMNMRANISRNFPGRTYRFYNGKSLYEFGYGLSYSTFSTHIASAPSTIMIQKNTSISKPLNNIFLDDQAIDISTISCLNLTFSLVIGVKNNGPFDGSHVVLVFLEPPSSEVVSGVPLKQLIGFERAQVKVGMTEFVTVKIDICKLLSNVDSDGKRKLVIGQHTILVGASSEKQVTHHIDITIGEEFMSE