Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28801.t1 | XP_003625957.1 | 97.5 | 772 | 18 | 1 | 1 | 772 | 1 | 771 | 0.00E+00 | 1544.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28801.t1 | Q94KD8 | 73.6 | 762 | 193 | 4 | 13 | 772 | 13 | 768 | 0.0e+00 | 1179.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28801.t1 | G7KSS4 | 97.5 | 772 | 18 | 1 | 1 | 772 | 1 | 771 | 0.0e+00 | 1544.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054662 | MS.gene28801 | 0.806459 | 8.14E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene28801 | MS.gene52354 | PPI |
| MS.gene071952 | MS.gene28801 | PPI |
| MS.gene28801 | MS.gene56021 | PPI |
| MS.gene047087 | MS.gene28801 | PPI |
| MS.gene35037 | MS.gene28801 | PPI |
| MS.gene051339 | MS.gene28801 | PPI |
| MS.gene28801 | MS.gene069177 | PPI |
| MS.gene28801 | MS.gene71615 | PPI |
| MS.gene28801 | MS.gene96691 | PPI |
| MS.gene028420 | MS.gene28801 | PPI |
| MS.gene068643 | MS.gene28801 | PPI |
| MS.gene28801 | MS.gene89508 | PPI |
| MS.gene28801 | MS.gene035923 | PPI |
| MS.gene28801 | MS.gene29843 | PPI |
| MS.gene28801 | MS.gene063041 | PPI |
| MS.gene28801 | MS.gene036268 | PPI |
| MS.gene28801 | MS.gene022503 | PPI |
| MS.gene28801 | MS.gene035916 | PPI |
| MS.gene00195 | MS.gene28801 | PPI |
| MS.gene28801 | MS.gene89505 | PPI |
| MS.gene28801 | MS.gene91308 | PPI |
| MS.gene28801 | MS.gene002171 | PPI |
| MS.gene28801 | MS.gene86920 | PPI |
| MS.gene058203 | MS.gene28801 | PPI |
| MS.gene027856 | MS.gene28801 | PPI |
| MS.gene010237 | MS.gene28801 | PPI |
| MS.gene28801 | MS.gene70386 | PPI |
| MS.gene28801 | MS.gene35614 | PPI |
| MS.gene28801 | MS.gene01140 | PPI |
| MS.gene28801 | MS.gene010244 | PPI |
| MS.gene010239 | MS.gene28801 | PPI |
| MS.gene89512 | MS.gene28801 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28801.t1 | MTR_7g109390 | 97.539 | 772 | 18 | 1 | 1 | 772 | 1 | 771 | 0.0 | 1557 |
| MS.gene28801.t1 | MTR_1g087240 | 81.806 | 764 | 134 | 3 | 10 | 772 | 6 | 765 | 0.0 | 1319 |
| MS.gene28801.t1 | MTR_2g034720 | 68.651 | 756 | 227 | 4 | 10 | 763 | 8 | 755 | 0.0 | 1090 |
| MS.gene28801.t1 | MTR_4g094285 | 58.546 | 743 | 290 | 7 | 29 | 762 | 39 | 772 | 0.0 | 890 |
| MS.gene28801.t1 | MTR_2g008240 | 56.771 | 768 | 320 | 7 | 1 | 763 | 14 | 774 | 0.0 | 884 |
| MS.gene28801.t1 | MTR_1g106860 | 53.166 | 758 | 343 | 6 | 8 | 754 | 3 | 759 | 0.0 | 811 |
| MS.gene28801.t1 | MTR_5g030860 | 48.123 | 746 | 358 | 10 | 42 | 763 | 41 | 781 | 0.0 | 746 |
| MS.gene28801.t1 | MTR_3g074060 | 47.821 | 780 | 375 | 13 | 4 | 762 | 6 | 774 | 0.0 | 736 |
| MS.gene28801.t1 | MTR_5g062430 | 46.863 | 781 | 388 | 11 | 4 | 762 | 5 | 780 | 0.0 | 734 |
| MS.gene28801.t1 | MTR_5g062320 | 46.429 | 784 | 385 | 14 | 5 | 762 | 4 | 778 | 0.0 | 720 |
| MS.gene28801.t1 | MTR_5g062370 | 46.835 | 790 | 385 | 14 | 5 | 767 | 4 | 785 | 0.0 | 717 |
| MS.gene28801.t1 | MTR_5g062650 | 45.070 | 781 | 401 | 12 | 6 | 762 | 7 | 783 | 0.0 | 703 |
| MS.gene28801.t1 | MTR_5g062370 | 50.512 | 586 | 270 | 7 | 5 | 572 | 4 | 587 | 0.0 | 600 |
| MS.gene28801.t1 | MTR_6g028110 | 25.361 | 623 | 353 | 22 | 29 | 580 | 15 | 596 | 3.12e-38 | 152 |
| MS.gene28801.t1 | MTR_6g028110 | 25.225 | 666 | 369 | 25 | 29 | 623 | 15 | 622 | 3.72e-38 | 151 |
| MS.gene28801.t1 | MTR_3g462820 | 26.768 | 594 | 339 | 27 | 50 | 580 | 29 | 589 | 1.04e-37 | 150 |
| MS.gene28801.t1 | MTR_6g028120 | 27.245 | 646 | 361 | 27 | 39 | 623 | 5 | 602 | 2.29e-37 | 149 |
| MS.gene28801.t1 | MTR_6g028100 | 25.910 | 687 | 366 | 31 | 11 | 623 | 4 | 621 | 1.11e-36 | 147 |
| MS.gene28801.t1 | MTR_6g028090 | 26.316 | 627 | 358 | 25 | 16 | 580 | 11 | 595 | 2.09e-36 | 146 |
| MS.gene28801.t1 | MTR_5g069800 | 26.095 | 525 | 313 | 21 | 87 | 580 | 93 | 573 | 1.86e-32 | 134 |
| MS.gene28801.t1 | MTR_5g069740 | 26.437 | 522 | 299 | 22 | 89 | 580 | 95 | 561 | 2.34e-32 | 133 |
| MS.gene28801.t1 | MTR_7g086030 | 25.268 | 653 | 361 | 30 | 41 | 623 | 2 | 597 | 1.01e-30 | 128 |
| MS.gene28801.t1 | MTR_7g086030 | 25.266 | 657 | 364 | 30 | 37 | 623 | 23 | 622 | 1.16e-30 | 128 |
| MS.gene28801.t1 | MTR_3g079750 | 26.325 | 604 | 335 | 30 | 47 | 580 | 32 | 595 | 5.81e-30 | 126 |
| MS.gene28801.t1 | MTR_2g030000 | 26.067 | 656 | 364 | 32 | 35 | 623 | 22 | 623 | 1.22e-27 | 119 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28801.t1 | AT1G02640 | 73.622 | 762 | 193 | 4 | 13 | 772 | 13 | 768 | 0.0 | 1185 |
| MS.gene28801.t1 | AT5G49360 | 69.393 | 758 | 224 | 7 | 13 | 765 | 19 | 773 | 0.0 | 1075 |
| MS.gene28801.t1 | AT5G64570 | 58.786 | 774 | 302 | 10 | 3 | 763 | 14 | 783 | 0.0 | 904 |
| MS.gene28801.t1 | AT5G09730 | 56.584 | 767 | 320 | 8 | 5 | 762 | 9 | 771 | 0.0 | 879 |
| MS.gene28801.t1 | AT3G19620 | 53.183 | 754 | 337 | 6 | 12 | 754 | 10 | 758 | 0.0 | 834 |
| MS.gene28801.t1 | AT5G64570 | 59.777 | 629 | 241 | 7 | 143 | 763 | 1 | 625 | 0.0 | 756 |
| MS.gene28801.t1 | AT5G64570 | 63.167 | 581 | 204 | 6 | 3 | 575 | 14 | 592 | 0.0 | 738 |
| MS.gene28801.t1 | AT1G78060 | 47.550 | 755 | 372 | 10 | 17 | 755 | 12 | 758 | 0.0 | 736 |
| MS.gene28801.t1 | AT5G10560 | 46.366 | 798 | 380 | 12 | 5 | 763 | 3 | 791 | 0.0 | 730 |
| MS.gene28801.t1 | AT5G09700 | 52.549 | 510 | 221 | 8 | 269 | 762 | 20 | 524 | 7.43e-177 | 518 |
| MS.gene28801.t1 | AT3G47000 | 28.881 | 599 | 321 | 25 | 50 | 580 | 17 | 578 | 2.81e-42 | 163 |
| MS.gene28801.t1 | AT3G47050 | 28.407 | 609 | 335 | 25 | 39 | 582 | 6 | 578 | 3.24e-41 | 160 |
| MS.gene28801.t1 | AT3G47040 | 26.537 | 618 | 345 | 26 | 35 | 582 | 2 | 580 | 2.59e-40 | 157 |
| MS.gene28801.t1 | AT3G47010 | 26.080 | 602 | 352 | 25 | 43 | 582 | 11 | 581 | 2.10e-36 | 146 |
| MS.gene28801.t1 | AT3G47040 | 25.786 | 636 | 352 | 28 | 35 | 582 | 2 | 605 | 9.00e-36 | 144 |
| MS.gene28801.t1 | AT3G47010 | 26.080 | 602 | 351 | 26 | 43 | 582 | 11 | 580 | 7.15e-35 | 141 |
| MS.gene28801.t1 | AT3G47000 | 30.233 | 430 | 223 | 18 | 50 | 423 | 17 | 425 | 3.43e-33 | 134 |
| MS.gene28801.t1 | AT3G62710 | 24.580 | 655 | 379 | 27 | 41 | 622 | 36 | 648 | 9.69e-32 | 132 |
| MS.gene28801.t1 | AT3G47040 | 27.703 | 444 | 246 | 19 | 35 | 423 | 2 | 425 | 1.58e-31 | 129 |
| MS.gene28801.t1 | AT5G04885 | 26.570 | 621 | 345 | 26 | 29 | 580 | 18 | 596 | 2.18e-30 | 128 |
| MS.gene28801.t1 | AT5G04885 | 26.570 | 621 | 345 | 26 | 29 | 580 | 18 | 596 | 2.18e-30 | 128 |
| MS.gene28801.t1 | AT5G04885 | 26.570 | 621 | 345 | 26 | 29 | 580 | 35 | 613 | 2.75e-30 | 127 |
| MS.gene28801.t1 | AT5G20950 | 27.287 | 656 | 356 | 32 | 33 | 623 | 97 | 696 | 2.24e-29 | 125 |
| MS.gene28801.t1 | AT5G20950 | 27.287 | 656 | 356 | 32 | 33 | 623 | 19 | 618 | 2.73e-29 | 124 |
| MS.gene28801.t1 | AT5G20950 | 27.287 | 656 | 356 | 32 | 33 | 623 | 19 | 618 | 2.73e-29 | 124 |
| MS.gene28801.t1 | AT3G47010 | 26.872 | 454 | 255 | 18 | 43 | 440 | 11 | 443 | 2.01e-28 | 119 |
| MS.gene28801.t1 | AT3G47000 | 28.873 | 426 | 245 | 18 | 186 | 580 | 3 | 401 | 2.02e-27 | 116 |
| MS.gene28801.t1 | AT3G47040 | 24.111 | 647 | 357 | 26 | 35 | 582 | 2 | 613 | 5.17e-27 | 117 |
| MS.gene28801.t1 | AT5G20940 | 24.847 | 652 | 365 | 27 | 41 | 622 | 25 | 621 | 3.02e-25 | 112 |
| MS.gene28801.t1 | AT3G47010 | 26.869 | 428 | 259 | 18 | 170 | 582 | 14 | 402 | 1.28e-24 | 108 |
| MS.gene28801.t1 | AT3G47050 | 28.000 | 375 | 204 | 14 | 39 | 362 | 6 | 365 | 3.38e-23 | 103 |
Find 218 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGCTTATGATGTTGATAAT+TGG | 0.194676 | 7.4:+5989654 | MS.gene28801:CDS |
| CATATTGTGGGCGGGTTATC+CGG | 0.194753 | 7.4:+5993719 | MS.gene28801:CDS |
| TGTAGAGATGATAAACAATT+TGG | 0.195462 | 7.4:+5993468 | MS.gene28801:CDS |
| CACAATATGCCAGCAACTTT+GGG | 0.214900 | 7.4:-5993705 | None:intergenic |
| GAGCAGCAGGGTTAACTTAT+TGG | 0.223733 | 7.4:+5989468 | MS.gene28801:CDS |
| GCTGGTTTACACACATCTTT+AGG | 0.235705 | 7.4:-5993000 | None:intergenic |
| AGAAAACAGTTCGTGGAGTA+TGG | 0.252637 | 7.4:+5992231 | MS.gene28801:CDS |
| ACACATTTGATGTACCATTT+AGG | 0.259080 | 7.4:+5992117 | MS.gene28801:CDS |
| AGATTTGGTGGTTTGTTTCC+TGG | 0.264252 | 7.4:+5987183 | MS.gene28801:CDS |
| CTTAGTGTAGTTGATAAATC+TGG | 0.274887 | 7.4:+5994372 | MS.gene28801:CDS |
| GCAAGTTTCACATTGCAAAA+TGG | 0.288046 | 7.4:-5987000 | None:intergenic |
| CACCGAACTGTGGCTGTCAT+TGG | 0.298747 | 7.4:+5993111 | MS.gene28801:CDS |
| GAGCCATCAGCTCAAGCTTA+TGG | 0.309828 | 7.4:+5992967 | MS.gene28801:CDS |
| TAGAATCTATATGTTCTTCC+TGG | 0.310906 | 7.4:-5993982 | None:intergenic |
| TCCTTCACACACATCCTAAA+TGG | 0.314863 | 7.4:-5992131 | None:intergenic |
| CCACAGTTCGGTGGCGTTGT+GGG | 0.316217 | 7.4:-5993101 | None:intergenic |
| GCATCAGCAGCAGCTTCTTC+TGG | 0.323818 | 7.4:-5992435 | None:intergenic |
| GCTTCTTTGTGGGAGGCTAT+TGG | 0.324022 | 7.4:+5987252 | MS.gene28801:CDS |
| AAACTTGGCCATGACAAATA+TGG | 0.327012 | 7.4:+5993933 | MS.gene28801:CDS |
| GGTAACCGTGACATCGGAAT+TGG | 0.330315 | 7.4:-5993136 | None:intergenic |
| TGATGTTGCAGGTTTGGATT+TGG | 0.335227 | 7.4:+5992816 | MS.gene28801:intron |
| ATCAAAGGGACCAACTATAT+TGG | 0.337627 | 7.4:+5993635 | MS.gene28801:CDS |
| CCACAATATGCCAGCAACTT+TGG | 0.338607 | 7.4:-5993706 | None:intergenic |
| ATGGAACTAGCCTGCTTTGA+TGG | 0.341997 | 7.4:-5992457 | None:intergenic |
| CTGGTTTACACACATCTTTA+GGG | 0.352334 | 7.4:-5992999 | None:intergenic |
| CCTGGGTACCCTACTTTGCT+TGG | 0.352787 | 7.4:-5993964 | None:intergenic |
| TCTCTGAAAATGTTCACATT+TGG | 0.361641 | 7.4:-5989494 | None:intergenic |
| ATATCTTCCTATTCCTTGTA+AGG | 0.364137 | 7.4:-5993406 | None:intergenic |
| GATGTCACGGTTACCATGAT+TGG | 0.364588 | 7.4:+5993144 | MS.gene28801:CDS |
| CTGCATGACGAGCTGCATCC+AGG | 0.369023 | 7.4:-5993497 | None:intergenic |
| TTGAAGGTGCAAATGAGATT+AGG | 0.389022 | 7.4:+5992931 | MS.gene28801:CDS |
| TGAAGGTGCAAATGAGATTA+GGG | 0.389563 | 7.4:+5992932 | MS.gene28801:CDS |
| CGTGGAGTATGGGGTCTTGA+TGG | 0.390124 | 7.4:+5992242 | MS.gene28801:CDS |
| CAGGTTTGGATTTGGATTGT+GGG | 0.390524 | 7.4:+5992824 | MS.gene28801:intron |
| ATATGCTGCTAGTTATGTTA+AGG | 0.395057 | 7.4:+5989574 | MS.gene28801:CDS |
| CATTGGTGATGTTAAGCATT+CGG | 0.398561 | 7.4:+5994431 | MS.gene28801:CDS |
| CAGTTTCAGCTTCTATAGAT+TGG | 0.401045 | 7.4:-5993548 | None:intergenic |
| TTCCTTGTCTAGCAGCTTCA+AGG | 0.402963 | 7.4:-5993038 | None:intergenic |
| TCCTATTCCTTGTAAGGGGC+TGG | 0.406262 | 7.4:-5993400 | None:intergenic |
| TTGGATTGTGGGCCTTTCCT+AGG | 0.413334 | 7.4:+5992835 | MS.gene28801:CDS |
| TATCTGATTGTGACTCTGTC+GGG | 0.415127 | 7.4:+5992379 | MS.gene28801:CDS |
| AAGAATGACCCCAAAGTTGC+TGG | 0.415236 | 7.4:+5993696 | MS.gene28801:CDS |
| ATATTGTGGGCGGGTTATCC+GGG | 0.415597 | 7.4:+5993720 | MS.gene28801:CDS |
| TGCTAAGACTATTCATCAGC+TGG | 0.416662 | 7.4:+5993428 | MS.gene28801:CDS |
| GTGTTCTCTGCTCCACCTAA+TGG | 0.418795 | 7.4:+5994243 | MS.gene28801:CDS |
| GTGGGACCTGGTACTAGATT+TGG | 0.418956 | 7.4:+5987168 | MS.gene28801:CDS |
| GTAGAGATGATAAACAATTT+GGG | 0.420072 | 7.4:+5993469 | MS.gene28801:CDS |
| ACCCTTTGCTTAGTCTTGGC+AGG | 0.421505 | 7.4:-5994321 | None:intergenic |
| ACCAGCATAGTTTCCAATCA+TGG | 0.422540 | 7.4:-5993157 | None:intergenic |
| GGACCAGTCGTGTATCCATT+TGG | 0.427074 | 7.4:+5994009 | MS.gene28801:CDS |
| ATGAGATTAGGGATGTTTGA+TGG | 0.429107 | 7.4:+5992943 | MS.gene28801:CDS |
| ACCGAACTGTGGCTGTCATT+GGG | 0.431191 | 7.4:+5993112 | MS.gene28801:CDS |
| CCCTAGGTGGGGTCGTGGAC+AGG | 0.431303 | 7.4:+5989517 | MS.gene28801:CDS |
| TAGTTATGTTAAGGGGCTAC+AGG | 0.438276 | 7.4:+5989583 | MS.gene28801:CDS |
| ATGTACAATGGAGGAGCAGC+AGG | 0.438394 | 7.4:+5989455 | MS.gene28801:CDS |
| GTTCTTACAATCAAGTGAAT+GGG | 0.439277 | 7.4:+5992177 | MS.gene28801:CDS |
| TGTTCTTACAATCAAGTGAA+TGG | 0.443382 | 7.4:+5992176 | MS.gene28801:CDS |
| TAGTTGATAAATCTGGGATT+AGG | 0.446021 | 7.4:+5994379 | MS.gene28801:CDS |
| AGGGCTAGCTCTTGATGAGC+TGG | 0.446584 | 7.4:-5993018 | None:intergenic |
| TATGCTGCTAGTTATGTTAA+GGG | 0.454987 | 7.4:+5989575 | MS.gene28801:CDS |
| GCAGGTTTGGATTTGGATTG+TGG | 0.455155 | 7.4:+5992823 | MS.gene28801:intron |
| TAGAAGCTGAAACTGTTGAT+AGG | 0.459634 | 7.4:+5993556 | MS.gene28801:CDS |
| ATGAGATCCTTCACTCTCTC+TGG | 0.460902 | 7.4:-5987027 | None:intergenic |
| CGCAGGTGTTGTGGAGGAGG+AGG | 0.462250 | 7.4:-5986924 | None:intergenic |
| TGGTGGTCGGAGGCACTTCA+TGG | 0.462301 | 7.4:+5987135 | MS.gene28801:CDS |
| CCAAAGTTGCTGGCATATTG+TGG | 0.466892 | 7.4:+5993706 | MS.gene28801:CDS |
| GCGGGTTATCCGGGCCAAGC+TGG | 0.466906 | 7.4:+5993729 | MS.gene28801:CDS |
| ACCCACAGTGGTGTCAGTTC+CGG | 0.467398 | 7.4:+5994077 | MS.gene28801:CDS |
| GAGGAGGAGGAGGATGAAGA+GGG | 0.472759 | 7.4:-5986911 | None:intergenic |
| CACCTAATGGAGGTAACCAT+TGG | 0.473068 | 7.4:+5994256 | MS.gene28801:CDS |
| GCCACAGTTCGGTGGCGTTG+TGG | 0.473664 | 7.4:-5993102 | None:intergenic |
| TCGCTTTCACTTTAATGCAC+TGG | 0.473826 | 7.4:+5989688 | MS.gene28801:CDS |
| GCTGCTGATGCCATCAAAGC+AGG | 0.474540 | 7.4:+5992447 | MS.gene28801:CDS |
| GGCTAGCACAGGGTCTTCAC+CGG | 0.476107 | 7.4:-5989546 | None:intergenic |
| GAGAGAGTGAAGGATCTCAT+TGG | 0.481603 | 7.4:+5987030 | MS.gene28801:CDS |
| TGACGAGCTGCATCCAGGGC+AGG | 0.482328 | 7.4:-5993492 | None:intergenic |
| GAAAACAGTTCGTGGAGTAT+GGG | 0.482826 | 7.4:+5992232 | MS.gene28801:CDS |
| TCTAACCCTTTGCTTAGTCT+TGG | 0.483430 | 7.4:-5994325 | None:intergenic |
| CTTCCATAAGCTTGAGCTGA+TGG | 0.483514 | 7.4:-5992970 | None:intergenic |
| TTAGTGTAGTTGATAAATCT+GGG | 0.485145 | 7.4:+5994373 | MS.gene28801:CDS |
| AAAGGTGGCAGCTGCATCAA+AGG | 0.485467 | 7.4:+5993620 | MS.gene28801:CDS |
| TCACTTCAAGCAGAAGCACT+TGG | 0.485778 | 7.4:+5994456 | MS.gene28801:CDS |
| ACAAGATCTTGTTGATGTCC+AGG | 0.487972 | 7.4:-5993594 | None:intergenic |
| CGTCGCAGGTGTTGTGGAGG+AGG | 0.488498 | 7.4:-5986927 | None:intergenic |
| CTCTTAAAGAAAACAGTTCG+TGG | 0.489484 | 7.4:+5992224 | MS.gene28801:CDS |
| GTAACCGTGACATCGGAATT+GGG | 0.491717 | 7.4:-5993135 | None:intergenic |
| GCAATGAGACCAAGCAAAGT+AGG | 0.495961 | 7.4:+5993955 | MS.gene28801:CDS |
| GACATCAAAACCAATATAGT+TGG | 0.499696 | 7.4:-5993645 | None:intergenic |
| GACATCAACGTGAAGGGCAA+TGG | 0.500448 | 7.4:-5994181 | None:intergenic |
| CATCCTGTGTGTGCACTCCT+AGG | 0.502179 | 7.4:-5992852 | None:intergenic |
| GAATGAATCACGTGCGTCGC+AGG | 0.503196 | 7.4:-5986941 | None:intergenic |
| TCTCATTGCCATATTTGTCA+TGG | 0.504005 | 7.4:-5993941 | None:intergenic |
| TCAACAAGATCTTGTTTCAA+AGG | 0.504548 | 7.4:+5993602 | MS.gene28801:CDS |
| GCATATCTACCGGCTAGCAC+AGG | 0.508175 | 7.4:-5989557 | None:intergenic |
| CACTTCAAGCAGAAGCACTT+GGG | 0.508608 | 7.4:+5994457 | MS.gene28801:CDS |
| GCTCAAGCTTATGGAAGATT+AGG | 0.511835 | 7.4:+5992976 | MS.gene28801:CDS |
| AGGTTGTCTCGGACGAAGCA+AGG | 0.514943 | 7.4:+5989429 | MS.gene28801:intron |
| TAAACAATTTGGGCCTGCCC+TGG | 0.515041 | 7.4:+5993479 | MS.gene28801:CDS |
| AGGTGTTGTGGAGGAGGAGG+AGG | 0.516295 | 7.4:-5986921 | None:intergenic |
| GGACCTGGTACTAGATTTGG+TGG | 0.516599 | 7.4:+5987171 | MS.gene28801:CDS |
| CACAGTTCGGTGGCGTTGTG+GGG | 0.518272 | 7.4:-5993100 | None:intergenic |
| GCCCAATGACAGCCACAGTT+CGG | 0.519148 | 7.4:-5993113 | None:intergenic |
| GCAGCACCACCAGCTTGGCC+CGG | 0.519379 | 7.4:-5993738 | None:intergenic |
| AGAGACCCTAGGTGGGGTCG+TGG | 0.519726 | 7.4:+5989512 | MS.gene28801:CDS |
| CAAAGTTGCTGGCATATTGT+GGG | 0.520314 | 7.4:+5993707 | MS.gene28801:CDS |
| TATGTTAATCCATGTCCAAA+TGG | 0.521339 | 7.4:-5994024 | None:intergenic |
| TGGTAATGTGCAGGTTGTCT+CGG | 0.521800 | 7.4:+5989418 | MS.gene28801:intron |
| CAATTGCAGCACCACCAGCT+TGG | 0.522386 | 7.4:-5993743 | None:intergenic |
| ACCAGCCCCTTACAAGGAAT+AGG | 0.526197 | 7.4:+5993399 | MS.gene28801:CDS |
| GTATCTGATTGTGACTCTGT+CGG | 0.526814 | 7.4:+5992378 | MS.gene28801:CDS |
| AGCAGATGTGAATAATGCTT+TGG | 0.527568 | 7.4:+5992900 | MS.gene28801:CDS |
| TCCTTGTCTAGCAGCTTCAA+GGG | 0.531276 | 7.4:-5993037 | None:intergenic |
| CTTTGTGGGAGGCTATTGGA+CGG | 0.533160 | 7.4:+5987256 | MS.gene28801:CDS |
| GTGGAGTATGGGGTCTTGAT+GGG | 0.536335 | 7.4:+5992243 | MS.gene28801:CDS |
| TGAAGACTATGTTCTCCCAT+TGG | 0.537870 | 7.4:-5994408 | None:intergenic |
| CACGTGCGTCGCAGGTGTTG+TGG | 0.538647 | 7.4:-5986933 | None:intergenic |
| GGTTATCCGGGCCAAGCTGG+TGG | 0.539763 | 7.4:+5993732 | MS.gene28801:CDS |
| ACCATGATTGGAAACTATGC+TGG | 0.540156 | 7.4:+5993156 | MS.gene28801:CDS |
| ATCTTCCTATTCCTTGTAAG+GGG | 0.540564 | 7.4:-5993404 | None:intergenic |
| TGCTTTGGTGAATACATTGA+AGG | 0.541919 | 7.4:+5992915 | MS.gene28801:CDS |
| GGTGAAGACCCTGTGCTAGC+CGG | 0.542174 | 7.4:+5989548 | MS.gene28801:CDS |
| GAACTTTCTCAAAAGCAACT+AGG | 0.543425 | 7.4:-5994293 | None:intergenic |
| ACCTAATGGAGGTAACCATT+GGG | 0.543629 | 7.4:+5994257 | MS.gene28801:CDS |
| CCAAGCAAAGTAGGGTACCC+AGG | 0.543790 | 7.4:+5993964 | MS.gene28801:CDS |
| GCCCTTGAAGCTGCTAGACA+AGG | 0.546317 | 7.4:+5993036 | MS.gene28801:CDS |
| TTTGTGGGAGGCTATTGGAC+GGG | 0.548197 | 7.4:+5987257 | MS.gene28801:CDS |
| GGATATACCAGCCCCTTACA+AGG | 0.548943 | 7.4:+5993393 | MS.gene28801:CDS |
| ACCCAATGGTTACCTCCATT+AGG | 0.549144 | 7.4:-5994258 | None:intergenic |
| AGATGCAACTATTCTAGTGA+TGG | 0.551163 | 7.4:+5993518 | MS.gene28801:CDS |
| TTTGATGTCTGGTGGGCCTG+TGG | 0.554424 | 7.4:+5993659 | MS.gene28801:CDS |
| GCTGAAACTGTTGATAGGAC+TGG | 0.555249 | 7.4:+5993561 | MS.gene28801:CDS |
| AACTATTCTAGTGATGGGCT+TGG | 0.555622 | 7.4:+5993524 | MS.gene28801:CDS |
| AGAATCTATATGTTCTTCCT+GGG | 0.555805 | 7.4:-5993981 | None:intergenic |
| CGGTGGCGTTGTGGGGAGAG+AGG | 0.555922 | 7.4:-5993093 | None:intergenic |
| TATCTTCCTATTCCTTGTAA+GGG | 0.556757 | 7.4:-5993405 | None:intergenic |
| TCTTGTGGGTACCATGTCAC+TGG | 0.557428 | 7.4:-5993901 | None:intergenic |
| GTGGTGTCAGTTCCGGTGCA+TGG | 0.558892 | 7.4:+5994084 | MS.gene28801:CDS |
| CCTGTCCACGACCCCACCTA+GGG | 0.559266 | 7.4:-5989517 | None:intergenic |
| GTTGCTGGCATATTGTGGGC+GGG | 0.561514 | 7.4:+5993711 | MS.gene28801:CDS |
| AAGGTGGCAGCTGCATCAAA+GGG | 0.563006 | 7.4:+5993621 | MS.gene28801:CDS |
| TGCATGACGAGCTGCATCCA+GGG | 0.565292 | 7.4:-5993496 | None:intergenic |
| GGTTGTCTCGGACGAAGCAA+GGG | 0.566041 | 7.4:+5989430 | MS.gene28801:intron |
| TCTGTTAGTGAATAATGCTC+CGG | 0.566762 | 7.4:+5987080 | MS.gene28801:CDS |
| GGTTTGGATCAGCACATGTA+GGG | 0.567867 | 7.4:-5992202 | None:intergenic |
| TCCTGCCAAGACTAAGCAAA+GGG | 0.568141 | 7.4:+5994320 | MS.gene28801:CDS |
| CTGGCGTTGATGCATAATGC+TGG | 0.569194 | 7.4:-5992416 | None:intergenic |
| CAATGAGACCAAGCAAAGTA+GGG | 0.570464 | 7.4:+5993956 | MS.gene28801:CDS |
| AGTTGCTGGCATATTGTGGG+CGG | 0.571075 | 7.4:+5993710 | MS.gene28801:CDS |
| AGGTTTGGATCAGCACATGT+AGG | 0.572366 | 7.4:-5992203 | None:intergenic |
| TGGGATTAGGAGAATTCCAA+TGG | 0.575301 | 7.4:+5994392 | MS.gene28801:CDS |
| AACAGACGGTAACAAGTTGA+AGG | 0.575857 | 7.4:+5989607 | MS.gene28801:CDS |
| ACAAGATCTTGTTTCAAAGG+TGG | 0.576713 | 7.4:+5993605 | MS.gene28801:CDS |
| TTCGCGTGCGACGCAAAAGA+CGG | 0.577885 | 7.4:+5986961 | MS.gene28801:CDS |
| TTTAGGATGTGTGTGAAGGA+AGG | 0.580245 | 7.4:+5992134 | MS.gene28801:CDS |
| TGTGGGGAGAGAGGCAAAGT+AGG | 0.580629 | 7.4:-5993084 | None:intergenic |
| GTGCGTCGCAGGTGTTGTGG+AGG | 0.585740 | 7.4:-5986930 | None:intergenic |
| TCCTGTCCACGACCCCACCT+AGG | 0.586492 | 7.4:-5989518 | None:intergenic |
| TTTGCAAAAGTAATGTCCAC+AGG | 0.587976 | 7.4:-5993675 | None:intergenic |
| GAGATGTGAGAGTGAGAATG+TGG | 0.590400 | 7.4:-5986884 | None:intergenic |
| ATTCCGACTCTAGGAACCGC+CGG | 0.590409 | 7.4:-5987099 | None:intergenic |
| GATGCAACTATTCTAGTGAT+GGG | 0.593173 | 7.4:+5993519 | MS.gene28801:CDS |
| GGTGTTTCAAACGTGGGACC+TGG | 0.594704 | 7.4:+5987156 | MS.gene28801:CDS |
| TATGATGTTGATAATTGGAA+TGG | 0.597120 | 7.4:+5989659 | MS.gene28801:CDS |
| GCTAGCACAGGGTCTTCACC+GGG | 0.600172 | 7.4:-5989545 | None:intergenic |
| GGTCGTGGACAGGAAACTCC+CGG | 0.600572 | 7.4:+5989527 | MS.gene28801:CDS |
| ATAACTAGCAGCATATCTAC+CGG | 0.601845 | 7.4:-5989567 | None:intergenic |
| CTTCATGGTGTTTCAAACGT+GGG | 0.603309 | 7.4:+5987150 | MS.gene28801:CDS |
| GCAGCGGTTGTGATAACTTG+AGG | 0.604040 | 7.4:-5987219 | None:intergenic |
| AAAACAGTTCGTGGAGTATG+GGG | 0.604096 | 7.4:+5992233 | MS.gene28801:CDS |
| CCGGTGCATGGTCATCGACA+TGG | 0.604267 | 7.4:+5994096 | MS.gene28801:CDS |
| CCATGTCGATGACCATGCAC+CGG | 0.604288 | 7.4:-5994096 | None:intergenic |
| GGGATTAGGAGAATTCCAAT+GGG | 0.606939 | 7.4:+5994393 | MS.gene28801:CDS |
| TGGGCCCAATTCCGATGTCA+CGG | 0.607511 | 7.4:+5993131 | MS.gene28801:CDS |
| AGTTATGTTAAGGGGCTACA+GGG | 0.608059 | 7.4:+5989584 | MS.gene28801:CDS |
| GAAGCAAGGGCAATGTACAA+TGG | 0.608620 | 7.4:+5989443 | MS.gene28801:CDS |
| GCTAAGACTATTCATCAGCT+GGG | 0.609180 | 7.4:+5993429 | MS.gene28801:CDS |
| CCCACAACGCCACCGAACTG+TGG | 0.609536 | 7.4:+5993101 | MS.gene28801:CDS |
| GCTCCGGCGGTTCCTAGAGT+CGG | 0.611677 | 7.4:+5987096 | MS.gene28801:CDS |
| TTATTTGGAACTGCTAACCC+AGG | 0.613155 | 7.4:+5993774 | MS.gene28801:CDS |
| CATATCTACCGGCTAGCACA+GGG | 0.613295 | 7.4:-5989556 | None:intergenic |
| TGTCCAAATGGATACACGAC+TGG | 0.615694 | 7.4:-5994012 | None:intergenic |
| GTCGTGTATCCATTTGGACA+TGG | 0.617686 | 7.4:+5994015 | MS.gene28801:CDS |
| AATCATGGTAACCGTGACAT+CGG | 0.617822 | 7.4:-5993142 | None:intergenic |
| AGAGTGACACACGCAAGATG+TGG | 0.620633 | 7.4:+5994150 | MS.gene28801:CDS |
| ACTTCATGGTGTTTCAAACG+TGG | 0.625609 | 7.4:+5987149 | MS.gene28801:CDS |
| TGTGTGTGCACTCCTAGGAA+AGG | 0.626000 | 7.4:-5992847 | None:intergenic |
| TTCCTGCCAAGACTAAGCAA+AGG | 0.628706 | 7.4:+5994319 | MS.gene28801:CDS |
| ATGCTGCTAGTTATGTTAAG+GGG | 0.628737 | 7.4:+5989576 | MS.gene28801:CDS |
| AGATGTGAGAGTGAGAATGT+GGG | 0.631120 | 7.4:-5986883 | None:intergenic |
| CAATGGTTACCTCCATTAGG+TGG | 0.633526 | 7.4:-5994255 | None:intergenic |
| ACAATATGCCAGCAACTTTG+GGG | 0.637083 | 7.4:-5993704 | None:intergenic |
| AAACCACCAAATCTAGTACC+AGG | 0.637932 | 7.4:-5987174 | None:intergenic |
| CAATGACAGCCACAGTTCGG+TGG | 0.639734 | 7.4:-5993110 | None:intergenic |
| TTCTTACAATCAAGTGAATG+GGG | 0.643775 | 7.4:+5992178 | MS.gene28801:CDS |
| AAGCTATGAGTGGTGGTCGG+AGG | 0.643933 | 7.4:+5987125 | MS.gene28801:CDS |
| TGAGGAAAACTAGTAGCACC+AGG | 0.644313 | 7.4:-5987201 | None:intergenic |
| TTCTCTGCTCCACCTAATGG+AGG | 0.650493 | 7.4:+5994246 | MS.gene28801:CDS |
| AAGAACATATAGATTCTACA+AGG | 0.651377 | 7.4:+5993987 | MS.gene28801:CDS |
| AAGGGGCTACAGGGAACAGA+CGG | 0.652426 | 7.4:+5989593 | MS.gene28801:CDS |
| TGTTGATAATTGGAATGGTG+TGG | 0.652811 | 7.4:+5989664 | MS.gene28801:CDS |
| AGAAGCATTAAAAGAAGCAG+CGG | 0.655929 | 7.4:-5987235 | None:intergenic |
| GCAAGGGCAATGTACAATGG+AGG | 0.657866 | 7.4:+5989446 | MS.gene28801:CDS |
| GAATGAAAAGCTATGAGTGG+TGG | 0.659564 | 7.4:+5987118 | MS.gene28801:CDS |
| GAAAAGCTATGAGTGGTGGT+CGG | 0.659624 | 7.4:+5987122 | MS.gene28801:CDS |
| ACCATTTAGGATGTGTGTGA+AGG | 0.662576 | 7.4:+5992130 | MS.gene28801:CDS |
| GTTAGTGAATAATGCTCCGG+CGG | 0.666592 | 7.4:+5987083 | MS.gene28801:CDS |
| ATCTGATTGTGACTCTGTCG+GGG | 0.668063 | 7.4:+5992380 | MS.gene28801:CDS |
| TGCAATACCAGAGAGAGTGA+AGG | 0.671354 | 7.4:+5987020 | MS.gene28801:CDS |
| GGAGAACATAGTCTTCACAT+TGG | 0.674389 | 7.4:+5994414 | MS.gene28801:CDS |
| TCGGAATGAAAAGCTATGAG+TGG | 0.676044 | 7.4:+5987115 | MS.gene28801:CDS |
| ACCGGAACTGACACCACTGT+GGG | 0.678978 | 7.4:-5994078 | None:intergenic |
| GAGGCAAGCTACCAGTGACA+TGG | 0.683941 | 7.4:+5993890 | MS.gene28801:CDS |
| TGTACAATGGAGGAGCAGCA+GGG | 0.698546 | 7.4:+5989456 | MS.gene28801:CDS |
| AGACGGTAACAAGTTGAAGG+TGG | 0.701591 | 7.4:+5989610 | MS.gene28801:CDS |
| AGAACATATAGATTCTACAA+GGG | 0.708494 | 7.4:+5993988 | MS.gene28801:CDS |
| ATTATCTAGTGCACCCACAG+TGG | 0.712988 | 7.4:+5994065 | MS.gene28801:CDS |
| TTTCCTAGGAGTGCACACAC+AGG | 0.714417 | 7.4:+5992849 | MS.gene28801:CDS |
| CACCGGAACTGACACCACTG+TGG | 0.731462 | 7.4:-5994079 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 5986877 | 5994494 | 5986877 | ID=MS.gene28801 |
| chr7.4 | mRNA | 5986877 | 5994494 | 5986877 | ID=MS.gene28801.t1;Parent=MS.gene28801 |
| chr7.4 | exon | 5986877 | 5987278 | 5986877 | ID=MS.gene28801.t1.exon1;Parent=MS.gene28801.t1 |
| chr7.4 | CDS | 5986877 | 5987278 | 5986877 | ID=cds.MS.gene28801.t1;Parent=MS.gene28801.t1 |
| chr7.4 | exon | 5989431 | 5989709 | 5989431 | ID=MS.gene28801.t1.exon2;Parent=MS.gene28801.t1 |
| chr7.4 | CDS | 5989431 | 5989709 | 5989431 | ID=cds.MS.gene28801.t1;Parent=MS.gene28801.t1 |
| chr7.4 | exon | 5992095 | 5992264 | 5992095 | ID=MS.gene28801.t1.exon3;Parent=MS.gene28801.t1 |
| chr7.4 | CDS | 5992095 | 5992264 | 5992095 | ID=cds.MS.gene28801.t1;Parent=MS.gene28801.t1 |
| chr7.4 | exon | 5992371 | 5992468 | 5992371 | ID=MS.gene28801.t1.exon4;Parent=MS.gene28801.t1 |
| chr7.4 | CDS | 5992371 | 5992468 | 5992371 | ID=cds.MS.gene28801.t1;Parent=MS.gene28801.t1 |
| chr7.4 | exon | 5992827 | 5993177 | 5992827 | ID=MS.gene28801.t1.exon5;Parent=MS.gene28801.t1 |
| chr7.4 | CDS | 5992827 | 5993177 | 5992827 | ID=cds.MS.gene28801.t1;Parent=MS.gene28801.t1 |
| chr7.4 | exon | 5993382 | 5993795 | 5993382 | ID=MS.gene28801.t1.exon6;Parent=MS.gene28801.t1 |
| chr7.4 | CDS | 5993382 | 5993795 | 5993382 | ID=cds.MS.gene28801.t1;Parent=MS.gene28801.t1 |
| chr7.4 | exon | 5993890 | 5994494 | 5993890 | ID=MS.gene28801.t1.exon7;Parent=MS.gene28801.t1 |
| chr7.4 | CDS | 5993890 | 5994494 | 5993890 | ID=cds.MS.gene28801.t1;Parent=MS.gene28801.t1 |
| Gene Sequence |
| Protein sequence |