AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene70386


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene70386.t1 MTR_4g094285 97.804 774 17 0 1 774 1 774 0.0 1568
MS.gene70386.t1 MTR_2g008240 84.387 775 120 1 1 774 1 775 0.0 1347
MS.gene70386.t1 MTR_1g087240 57.332 757 311 5 19 772 8 755 0.0 895
MS.gene70386.t1 MTR_7g109390 57.647 765 302 8 17 772 10 761 0.0 891
MS.gene70386.t1 MTR_2g034720 57.405 763 306 8 14 772 7 754 0.0 874
MS.gene70386.t1 MTR_1g106860 56.404 773 297 12 13 764 6 759 0.0 849
MS.gene70386.t1 MTR_5g030860 48.677 756 362 9 42 774 30 782 0.0 744
MS.gene70386.t1 MTR_5g062320 46.692 786 390 14 10 774 3 780 0.0 723
MS.gene70386.t1 MTR_3g074060 47.375 781 378 14 14 774 9 776 0.0 723
MS.gene70386.t1 MTR_5g062430 46.252 787 383 13 14 774 10 782 0.0 717
MS.gene70386.t1 MTR_5g062370 46.379 787 382 13 14 774 10 782 0.0 709
MS.gene70386.t1 MTR_5g062650 45.970 794 388 15 9 774 5 785 0.0 700
MS.gene70386.t1 MTR_5g062370 49.663 594 278 10 14 594 10 595 0.0 580
MS.gene70386.t1 MTR_6g028090 27.103 642 359 27 38 612 13 612 2.77e-41 160
MS.gene70386.t1 MTR_6g028120 27.543 639 335 27 51 612 6 593 1.08e-40 159
MS.gene70386.t1 MTR_6g028100 26.646 638 338 26 53 612 27 612 5.55e-40 157
MS.gene70386.t1 MTR_6g028110 25.991 681 376 28 38 641 14 643 5.03e-39 154
MS.gene70386.t1 MTR_3g079750 27.724 624 356 25 50 612 23 612 1.14e-38 153
MS.gene70386.t1 MTR_6g028110 26.260 655 348 28 38 612 14 613 2.53e-38 152
MS.gene70386.t1 MTR_3g462820 25.373 603 352 21 54 593 22 589 2.48e-35 142
MS.gene70386.t1 MTR_7g086030 26.100 659 349 29 53 637 3 597 2.84e-35 142
MS.gene70386.t1 MTR_7g086030 26.100 659 349 29 53 637 28 622 3.29e-35 142
MS.gene70386.t1 MTR_2g030000 27.074 687 358 28 43 648 19 643 5.54e-35 142
MS.gene70386.t1 MTR_5g069800 27.070 628 351 27 52 612 5 592 3.18e-34 139
MS.gene70386.t1 MTR_5g069740 26.045 622 351 24 54 612 5 580 1.36e-33 137
MS.gene70386.t1 MTR_7g086010 28.495 372 206 17 89 437 118 452 3.41e-24 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene70386.t1 AT5G64570 71.483 782 204 4 5 774 10 784 0.0 1186
MS.gene70386.t1 AT5G09730 68.490 768 230 3 12 774 13 773 0.0 1126
MS.gene70386.t1 AT5G64570 73.206 627 161 2 154 774 1 626 0.0 994
MS.gene70386.t1 AT5G64570 73.898 590 141 3 5 588 10 592 0.0 904
MS.gene70386.t1 AT3G19620 56.539 757 315 7 18 764 6 758 0.0 878
MS.gene70386.t1 AT5G49360 57.833 766 301 11 19 772 15 770 0.0 868
MS.gene70386.t1 AT1G02640 54.941 759 335 4 15 772 6 758 0.0 865
MS.gene70386.t1 AT5G10560 47.781 766 363 9 39 772 30 790 0.0 740
MS.gene70386.t1 AT1G78060 47.872 752 366 11 40 774 25 767 0.0 734
MS.gene70386.t1 AT5G09700 66.598 482 155 2 299 774 45 526 0.0 689
MS.gene70386.t1 AT3G47050 26.777 605 364 22 51 603 7 584 1.97e-39 155
MS.gene70386.t1 AT3G47000 26.849 622 356 23 54 612 10 595 1.86e-38 152
MS.gene70386.t1 AT3G47010 25.765 621 372 22 50 612 7 596 6.72e-37 147
MS.gene70386.t1 AT3G47040 25.038 655 372 24 54 643 10 610 1.25e-36 146
MS.gene70386.t1 AT3G47010 25.884 622 369 23 50 612 7 595 2.94e-36 145
MS.gene70386.t1 AT5G04885 27.116 638 340 29 54 616 30 617 1.13e-35 144
MS.gene70386.t1 AT5G04885 27.116 638 340 29 54 616 30 617 1.13e-35 144
MS.gene70386.t1 AT5G04885 27.116 638 340 29 54 616 47 634 1.17e-35 144
MS.gene70386.t1 AT3G62710 25.877 684 365 27 17 612 11 640 8.06e-35 141
MS.gene70386.t1 AT3G47040 24.478 670 382 25 54 643 10 635 5.78e-34 139
MS.gene70386.t1 AT5G20940 26.887 636 361 27 41 612 18 613 1.10e-33 138
MS.gene70386.t1 AT5G20950 26.340 653 375 30 38 625 90 701 3.50e-32 134
MS.gene70386.t1 AT3G47000 29.372 446 223 18 54 437 10 425 6.44e-32 130
MS.gene70386.t1 AT5G20950 26.340 653 375 30 38 625 12 623 7.38e-32 132
MS.gene70386.t1 AT5G20950 26.340 653 375 30 38 625 12 623 7.38e-32 132
MS.gene70386.t1 AT3G47040 27.009 448 231 18 54 437 10 425 4.27e-30 124
MS.gene70386.t1 AT3G47010 26.696 457 253 17 50 449 7 438 5.55e-28 118
MS.gene70386.t1 AT3G47040 23.348 681 384 26 54 643 10 643 3.96e-25 111
MS.gene70386.t1 AT3G47050 28.383 303 162 10 51 310 7 297 2.43e-23 103
MS.gene70386.t1 AT3G47010 26.150 413 266 15 215 612 29 417 5.19e-23 103

Find 187 sgRNAs with CRISPR-Local

Find 267 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTAAATCATCACGCTTAA+AGG 0.103984 4.3:+20108951 None:intergenic
TCAGACCACCATTCATATTT+TGG 0.140699 4.3:+20112360 None:intergenic
CACCAAACATTAACATATTT+AGG 0.157012 4.3:-20112068 MS.gene70386:CDS
CGTGGCAAATGGAAACTAAA+TGG 0.204423 4.3:-20111611 MS.gene70386:CDS
CTCAACTTTCGAGCATAAAT+TGG 0.211723 4.3:-20109342 MS.gene70386:CDS
ATTAAATCATTGGCAGTTAT+TGG 0.219557 4.3:-20110574 MS.gene70386:CDS
GCTGACCCTGATCTTCTTAA+AGG 0.226486 4.3:-20111641 MS.gene70386:CDS
TGTTCCTACAATCAAGTAAA+TGG 0.245995 4.3:-20111677 MS.gene70386:CDS
GCTGAAGTGCAGACATCTTT+TGG 0.254948 4.3:+20110685 None:intergenic
ATCCAGCATTGGCGAATTAC+AGG 0.265672 4.3:-20112503 MS.gene70386:CDS
TCTTGACCTCTTCCCCATCT+TGG 0.278328 4.3:+20112042 None:intergenic
TGCAGCTTCCTCAGGGGTCT+TGG 0.289885 4.3:+20111068 None:intergenic
GCCATAGCTGATGTCATCTT+TGG 0.300033 4.3:-20110017 MS.gene70386:CDS
TGCCAATGATTTAATAGCTT+TGG 0.304831 4.3:+20110582 None:intergenic
CATGCCTCCTCCAGACATTA+TGG 0.305665 4.3:+20110118 None:intergenic
GACTTGGCTGCAGCTTCCTC+AGG 0.311461 4.3:+20111060 None:intergenic
GGGGAAACTGTCTTCTCATT+TGG 0.319056 4.3:-20109380 MS.gene70386:CDS
ATTCGCCAATGCTGGATTCT+TGG 0.323855 4.3:+20112509 None:intergenic
TCAATCACACAGCTCTTAAA+AGG 0.325703 4.3:+20111722 None:intergenic
ATTGTAGACGGCATTGTTAA+TGG 0.328849 4.3:+20110780 None:intergenic
CAGGGTTAACATTCTTCTTC+CGG 0.333067 4.3:-20110201 MS.gene70386:CDS
ACCAAACATTAACATATTTA+GGG 0.344637 4.3:-20112067 MS.gene70386:CDS
TGCCAAAGCTATTAAATCAT+TGG 0.355308 4.3:-20110584 MS.gene70386:CDS
TTTAAGAGCTGTGTGATTGA+TGG 0.379593 4.3:-20111719 MS.gene70386:CDS
GAGAATAGGCATAGGAAAAC+TGG 0.380578 4.3:+20112272 None:intergenic
GCTGTCAAGCAAGGGCTTAT+AGG 0.388682 4.3:-20110811 MS.gene70386:CDS
TTAATAGCTTTGGCATTAAG+AGG 0.389345 4.3:+20110592 None:intergenic
ATGCGTCTAGGTTTCTTTGA+TGG 0.391137 4.3:-20110742 MS.gene70386:CDS
GTCCCAATGCCAATGCTACT+AGG 0.392586 4.3:-20110552 MS.gene70386:CDS
GATCCTAGCAAGCAACCTTA+TGG 0.393133 4.3:-20110718 MS.gene70386:CDS
CCATAGCTGATGTCATCTTT+GGG 0.402935 4.3:-20110016 MS.gene70386:CDS
TTTCCATAAGGTTGCTTGCT+AGG 0.410934 4.3:+20110715 None:intergenic
AGCAGCAACCTTAAGCTTGT+TGG 0.411669 4.3:+20111936 None:intergenic
CAGGGGTCTTGGTGTAATGT+TGG 0.414800 4.3:+20111079 None:intergenic
GGCATCATCTAGTGCAGCAT+TGG 0.428477 4.3:+20110301 None:intergenic
AGGGTTAACATTCTTCTTCC+GGG 0.431011 4.3:-20110200 MS.gene70386:CDS
TGACAGCACCTTCTGTATAT+CGG 0.431143 4.3:+20110827 None:intergenic
ATAACACCTTTAAGAAGATC+AGG 0.432414 4.3:+20111635 None:intergenic
GTGATTCTTGCCATAATGTC+TGG 0.433130 4.3:-20110128 MS.gene70386:CDS
ACCTTCGTAGTTTCCAATCA+TGG 0.434772 4.3:+20110528 None:intergenic
CTTGTTAGCAAATATGCAGC+AGG 0.437373 4.3:-20111997 MS.gene70386:CDS
CTCATGTTCATATTGGTCAT+TGG 0.438430 4.3:+20109452 None:intergenic
GACATTATGGCAAGAATCAC+AGG 0.439622 4.3:+20110131 None:intergenic
ATTGGTTAAAGCACCACAAT+TGG 0.441371 4.3:-20109324 MS.gene70386:CDS
ATACATTACCACAGCATTGA+AGG 0.443167 4.3:+20111855 None:intergenic
TGCACCTCAGAAACACTTGT+TGG 0.443221 4.3:-20109123 MS.gene70386:CDS
TTGTGGGAACTAAGGCTGTT+AGG 0.443745 4.3:+20110357 None:intergenic
AGGCGAAAACTGCAGATGTT+TGG 0.443791 4.3:+20112541 None:intergenic
CTTCATGGAGTCTCTTACAT+TGG 0.446926 4.3:-20112333 MS.gene70386:CDS
GCATTGGTGCATTGAACATC+AGG 0.448023 4.3:+20110317 None:intergenic
GTTGGTTATCCTGGAGAAGC+TGG 0.449136 4.3:-20110047 MS.gene70386:CDS
CATATTTGCTAACAAGTAAA+GGG 0.449152 4.3:+20112004 None:intergenic
GGTTGGCTGGTTTAACATAT+TGG 0.452673 4.3:-20112092 MS.gene70386:CDS
GCATATTTGCTAACAAGTAA+AGG 0.454563 4.3:+20112003 None:intergenic
GTTCCCACAAGCTTTGCTGC+TGG 0.455205 4.3:-20110344 MS.gene70386:CDS
ATGCACAACGTCGGGTTGGC+TGG 0.455328 4.3:-20112105 MS.gene70386:CDS
AACCTGTAATTCGCCAATGC+TGG 0.456897 4.3:+20112501 None:intergenic
TCCCTAAATATGTTAATGTT+TGG 0.457701 4.3:+20112066 None:intergenic
CAGCTTCACGAGCTAGCTCC+TGG 0.458313 4.3:+20110659 None:intergenic
CAAGAGCAATGCACAACGTC+GGG 0.459504 4.3:-20112113 MS.gene70386:CDS
ACATATTTAGGGATCCAAGA+TGG 0.461963 4.3:-20112056 MS.gene70386:CDS
AAAGAAGCTGCAATGAGAAT+AGG 0.464509 4.3:+20112258 None:intergenic
ATCAGGCCTCATGTTCATAT+TGG 0.465309 4.3:+20109445 None:intergenic
TCCCTTTGTTCTTGATCCTG+AGG 0.465656 4.3:+20109201 None:intergenic
CGGTGCAAATCTTGCAATAG+AGG 0.465750 4.3:-20110237 MS.gene70386:CDS
GGGTAGCCTGTAGCAGGATC+AGG 0.466135 4.3:+20109428 None:intergenic
AATGCTACTAGGGCCATGAT+TGG 0.472467 4.3:-20110541 MS.gene70386:CDS
TGTAAGTCACTCGATGTTGT+TGG 0.472630 4.3:-20109257 MS.gene70386:CDS
TGGAGACTCCAACAAGCTTA+AGG 0.472702 4.3:-20111944 MS.gene70386:CDS
CATATTTAGGGATCCAAGAT+GGG 0.473111 4.3:-20112055 MS.gene70386:CDS
TGAGGTGCATTGTGCACTGC+AGG 0.474909 4.3:+20109137 None:intergenic
GCCCTAGTAGCATTGGCATT+GGG 0.475560 4.3:+20110550 None:intergenic
GCTGTTGATGTAAGCAGACT+TGG 0.476218 4.3:-20112387 MS.gene70386:CDS
GAGAAACCTTACCTTTCCTA+TGG 0.476556 4.3:+20112215 None:intergenic
TGGTGGTCTGAAGCACTTCA+TGG 0.476761 4.3:-20112348 MS.gene70386:CDS
AGCAAAGCTTGTGGGAACTA+AGG 0.478113 4.3:+20110349 None:intergenic
ATGTAGTTTACCTGCTAGAA+TGG 0.479155 4.3:+20111038 None:intergenic
ACCTCAGGATCAAGAACAAA+GGG 0.481557 4.3:-20109202 MS.gene70386:CDS
GGAGTCTCTTACATTGGTCC+AGG 0.482956 4.3:-20112327 MS.gene70386:CDS
ACTAACTGTTGCTGCTGTCC+CGG 0.486620 4.3:+20110182 None:intergenic
TTTGGACCAAGGTTTCCATA+AGG 0.489120 4.3:+20110703 None:intergenic
AAGGTGTTATCCGTGGCAAA+TGG 0.492172 4.3:-20111622 MS.gene70386:CDS
CTTTCCTATGGTTTGAAACA+AGG 0.492728 4.3:+20112227 None:intergenic
CTACCAGGGTAGCCTGTAGC+AGG 0.493617 4.3:+20109422 None:intergenic
TTGAGTGTGGTTGATGAACT+TGG 0.494459 4.3:-20109029 MS.gene70386:CDS
GGCAAGAATCACAGGCCCCT+TGG 0.498411 4.3:+20110139 None:intergenic
GGTCTACAACAAACTGATGA+TGG 0.502433 4.3:-20111964 MS.gene70386:CDS
AACAGGAAAATCAGAAGCAC+TGG 0.505611 4.3:-20109081 MS.gene70386:CDS
GGCCCTAGTAGCATTGGCAT+TGG 0.508942 4.3:+20110549 None:intergenic
TAGCCTTTGATATTCACCTC+AGG 0.509602 4.3:-20109217 MS.gene70386:CDS
TGTCTGCACTTCAGCAAACC+AGG 0.511708 4.3:-20110677 MS.gene70386:CDS
GCTTCCTTGTTTCAAACCAT+AGG 0.512430 4.3:-20112231 MS.gene70386:CDS
TTTACCTGCTAGAATGGACT+TGG 0.512571 4.3:+20111044 None:intergenic
GTGGCAAATGGAAACTAAAT+GGG 0.513107 4.3:-20111610 MS.gene70386:intron
GCTCGTGAAGCTGCAAGGCA+AGG 0.513237 4.3:-20110649 MS.gene70386:CDS
ACTGTCTTCTCATTTGGAGA+TGG 0.513776 4.3:-20109374 MS.gene70386:CDS
GCAGCTCCACCAGCTTCTCC+AGG 0.518655 4.3:+20110038 None:intergenic
CTTGTTTCAAACCATAGGAA+AGG 0.519277 4.3:-20112226 MS.gene70386:intron
ATAGGAAAACTGGTTGCTCC+AGG 0.520085 4.3:+20112282 None:intergenic
ACTTGGCTGCAGCTTCCTCA+GGG 0.522958 4.3:+20111061 None:intergenic
TAAAATCTGTATGTTCTACC+AGG 0.524873 4.3:+20109407 None:intergenic
CTCGTGAAGCTGCAAGGCAA+GGG 0.532764 4.3:-20110648 MS.gene70386:CDS
AATCATGGCCCTAGTAGCAT+TGG 0.533162 4.3:+20110543 None:intergenic
TTGGGATTCCAAAATATGAA+TGG 0.535603 4.3:-20112368 MS.gene70386:CDS
TGGATTCTTGGCAACATCGC+AGG 0.541711 4.3:+20112521 None:intergenic
ATGAGGCCTGATCCTGCTAC+AGG 0.541829 4.3:-20109434 MS.gene70386:CDS
CAGCCAGCAGCAAAGCTTGT+GGG 0.542585 4.3:+20110341 None:intergenic
CAGAGGAAAACAGAGACGTT+AGG 0.545414 4.3:+20112615 None:intergenic
TGTCGCAAAATTATTGTAGA+CGG 0.546588 4.3:+20110768 None:intergenic
CAAACATGATCATCAGCTAA+AGG 0.549569 4.3:+20109293 None:intergenic
TGAAGTTGCAAATGCAGCCA+AGG 0.549573 4.3:-20110156 MS.gene70386:CDS
TAGAGGCAGAGAGTCATGAC+AGG 0.550424 4.3:-20110220 MS.gene70386:CDS
ACAAGTAAAGGGTCTTCTCC+TGG 0.552386 4.3:+20112015 None:intergenic
AGCTAGCTCGTGAAGCTGCA+AGG 0.553456 4.3:-20110654 MS.gene70386:CDS
CTGCATATGATGTTGATGAC+TGG 0.554305 4.3:-20111897 MS.gene70386:CDS
TCCCAATGCCAATGCTACTA+GGG 0.556982 4.3:-20110551 MS.gene70386:CDS
ACAGAAGGTGCTGTCAAGCA+AGG 0.561917 4.3:-20110820 MS.gene70386:CDS
GCAGCCAAGTCCATTCTAGC+AGG 0.563938 4.3:-20111048 MS.gene70386:intron
GATCCTGAGGTGAATATCAA+AGG 0.569135 4.3:+20109214 None:intergenic
AGGGATCCAAGATGGGGAAG+AGG 0.570000 4.3:-20112048 MS.gene70386:CDS
AAGGTTGACATTGCAAGAGA+AGG 0.572395 4.3:-20112430 MS.gene70386:CDS
AGCAATGCACAACGTCGGGT+TGG 0.573033 4.3:-20112109 MS.gene70386:CDS
AAGCAACCTTATGGAAACCT+TGG 0.575163 4.3:-20110709 MS.gene70386:CDS
TTGACATTGCAAGAGAAGGT+TGG 0.577392 4.3:-20112426 MS.gene70386:CDS
CACAGCTCTTAAAAGGTGGT+TGG 0.578720 4.3:+20111729 None:intergenic
GGAAAACATGTGCTTCATGT+AGG 0.579692 4.3:-20108987 MS.gene70386:CDS
CAGAAGGTGCTGTCAAGCAA+GGG 0.579821 4.3:-20110819 MS.gene70386:CDS
TTTGCGACATTAATGCGTCT+AGG 0.581567 4.3:-20110754 MS.gene70386:CDS
CACCTCAGGATCAAGAACAA+AGG 0.587124 4.3:-20109203 MS.gene70386:CDS
CATTTAGTTTCCATTTGCCA+CGG 0.587656 4.3:+20111612 None:intergenic
GGTTATCCTGGAGAAGCTGG+TGG 0.587955 4.3:-20110044 MS.gene70386:CDS
TTTCTTGGCCGATATACAGA+AGG 0.588531 4.3:-20110835 MS.gene70386:CDS
CCCAAAGATGACATCAGCTA+TGG 0.590854 4.3:+20110016 None:intergenic
AGAAATTGAGTGTGGATGCA+AGG 0.597818 4.3:-20112470 MS.gene70386:CDS
CTGTTGATGTAAGCAGACTT+GGG 0.597835 4.3:-20112386 MS.gene70386:CDS
TGTTGCCAAGAATCCAGCAT+TGG 0.599346 4.3:-20112514 MS.gene70386:CDS
TATGCAGCAGGGTACGTGAA+AGG 0.600652 4.3:-20111985 MS.gene70386:CDS
GGGTGAAAGACCTTGTGAGA+AGG 0.601719 4.3:-20112449 MS.gene70386:CDS
ATTTGCACCGACTACAATCA+CGG 0.602874 4.3:+20110250 None:intergenic
ACTTTGTCTACATATGATTG+TGG 0.603286 4.3:+20109476 None:intergenic
CATCAACAGCAGAATTCACA+AGG 0.603921 4.3:+20112400 None:intergenic
GGTTGCTCCAGGTATAACAT+TGG 0.604127 4.3:+20112293 None:intergenic
GATCCTGCTACAGGCTACCC+TGG 0.605372 4.3:-20109425 MS.gene70386:CDS
CTTCTTAAAGGTGTTATCCG+TGG 0.607358 4.3:-20111629 MS.gene70386:CDS
ACAGCCAGCAGCAAAGCTTG+TGG 0.607399 4.3:+20110340 None:intergenic
GAAGTTGCAAATGCAGCCAA+GGG 0.607986 4.3:-20110155 MS.gene70386:CDS
AAAGCCAACAAGTGTTTCTG+AGG 0.608076 4.3:+20109119 None:intergenic
GCGTTACACCTTCAATGCTG+TGG 0.608802 4.3:-20111863 MS.gene70386:intron
CATAATGTCTGGAGGAGGCA+TGG 0.611672 4.3:-20110117 MS.gene70386:CDS
CTTGGCTGCAGCTTCCTCAG+GGG 0.612324 4.3:+20111062 None:intergenic
GAGTCTCTTACATTGGTCCA+GGG 0.612774 4.3:-20112326 MS.gene70386:CDS
CTTGCCATAATGTCTGGAGG+AGG 0.615660 4.3:-20110122 MS.gene70386:CDS
AAAGGTGATGTATATTTGCA+TGG 0.623811 4.3:+20110386 None:intergenic
GAAATTGAGTGTGGATGCAA+GGG 0.626342 4.3:-20112469 MS.gene70386:CDS
GCAAGAGCAATGCACAACGT+CGG 0.629064 4.3:-20112114 MS.gene70386:CDS
GATGCAACCGTGATTGTAGT+CGG 0.629741 4.3:-20110257 MS.gene70386:CDS
GGCAACAGAAAAGTTGCCCT+AGG 0.635515 4.3:-20109008 MS.gene70386:CDS
TGATTGTGGATACCATGTCA+TGG 0.635666 4.3:+20109490 None:intergenic
GCTGCAATGAGAATAGGCAT+AGG 0.636909 4.3:+20112264 None:intergenic
AAATATACATCACCTTTGCA+AGG 0.638543 4.3:-20110380 MS.gene70386:CDS
ATCACACAGCTCTTAAAAGG+TGG 0.639170 4.3:+20111725 None:intergenic
AAAGGAACAGACACCAATTG+TGG 0.639642 4.3:+20109311 None:intergenic
ACAGGATTGGATTTGAACTG+TGG 0.643755 4.3:-20110862 MS.gene70386:intron
GATTGTGGATACCATGTCAT+GGG 0.644060 4.3:+20109491 None:intergenic
CAATGACCAATATGAACATG+AGG 0.645368 4.3:-20109451 MS.gene70386:CDS
AAGGCTGTTAGGCCTTGCAA+AGG 0.647052 4.3:+20110368 None:intergenic
TAACACCTTTAAGAAGATCA+GGG 0.647148 4.3:+20111636 None:intergenic
GGATTCCAAAATATGAATGG+TGG 0.648983 4.3:-20112365 MS.gene70386:CDS
TTGTTAGCAAATATGCAGCA+GGG 0.654785 4.3:-20111996 MS.gene70386:CDS
GCAATGTCAACCTTCTCACA+AGG 0.660006 4.3:+20112439 None:intergenic
CAAACAGAACAAAGAAACAG+AGG 0.661188 4.3:+20112598 None:intergenic
ACCACCACTCAGCAAAAGTG+TGG 0.664666 4.3:+20112575 None:intergenic
AGATCAGGGTCAGCACAAGT+CGG 0.668758 4.3:+20111650 None:intergenic
AAAATCTGTATGTTCTACCA+GGG 0.669451 4.3:+20109408 None:intergenic
GGAAGAGGTCAAGAAACACC+AGG 0.670289 4.3:-20112033 MS.gene70386:CDS
ATATTTAGGGATCCAAGATG+GGG 0.672629 4.3:-20112054 MS.gene70386:CDS
GTGGAAGGCTACCCATGACA+TGG 0.674570 4.3:-20109502 MS.gene70386:CDS
TGTTTGTAAAGATTTGAGTG+TGG 0.683829 4.3:-20109042 MS.gene70386:CDS
GGTGCATTGTGCACTGCAGG+AGG 0.684891 4.3:+20109140 None:intergenic
CTGCAACAAGAAATTGAGTG+TGG 0.685493 4.3:-20112478 MS.gene70386:CDS
GCCATGATTGGAAACTACGA+AGG 0.687224 4.3:-20110529 MS.gene70386:intron
AGAGGCAGAGAGTCATGACA+GGG 0.690610 4.3:-20110219 MS.gene70386:CDS
AATCACGGTTGCATCTGCTG+AGG 0.690719 4.3:+20110265 None:intergenic
TATGATGTTGATGACTGGAA+AGG 0.691696 4.3:-20111892 MS.gene70386:CDS
ATTCTTGCCATAATGTCTGG+AGG 0.713271 4.3:-20110125 MS.gene70386:CDS
AAGTTGCAAATGCAGCCAAG+GGG 0.732574 4.3:-20110154 MS.gene70386:CDS
ACATTACACCAAGACCCCTG+AGG 0.763610 4.3:-20111076 MS.gene70386:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATAAAAAAATTGAAAAC+AGG + chr4.3:20110412-20110431 None:intergenic 10.0%
!! ATTTAACCTATAAAAATTAT+AGG + chr4.3:20111106-20111125 None:intergenic 10.0%
!!! AAATAACAAATATTGTTTTA+TGG - chr4.3:20109427-20109446 MS.gene70386:CDS 10.0%
!!! ATATTTTGTTTATATTTGAA+TGG + chr4.3:20110050-20110069 None:intergenic 10.0%
!! AACATATTATTGAGAATTAT+TGG + chr4.3:20111961-20111980 None:intergenic 15.0%
!!! ACAACATAATTTTTTAATTC+AGG - chr4.3:20112068-20112087 MS.gene70386:CDS 15.0%
!!! CATATAAAAGATAATTGTTT+TGG + chr4.3:20110216-20110235 None:intergenic 15.0%
!! ACCAAACATTAACATATTTA+GGG - chr4.3:20109525-20109544 MS.gene70386:intron 20.0%
!!! AAATTTTGATTTTACAGGAT+TGG - chr4.3:20110717-20110736 MS.gene70386:CDS 20.0%
!!! AACAACTTTGATTTTAAACT+CGG - chr4.3:20111734-20111753 MS.gene70386:CDS 20.0%
!!! AACATACAGATTTTATAAAG+GGG - chr4.3:20112193-20112212 MS.gene70386:intron 20.0%
!!! AATTGTTTTGGATGTAAATT+GGG + chr4.3:20110204-20110223 None:intergenic 20.0%
!!! ACATAATTTTTTAATTCAGG+TGG - chr4.3:20112071-20112090 MS.gene70386:CDS 20.0%
!!! AGAACATACAGATTTTATAA+AGG - chr4.3:20112191-20112210 MS.gene70386:intron 20.0%
!!! GAACATACAGATTTTATAAA+GGG - chr4.3:20112192-20112211 MS.gene70386:intron 20.0%
!!! TAATTGTTGTTGATTTTGTT+AGG - chr4.3:20109812-20109831 MS.gene70386:intron 20.0%
!!! TAATTGTTTTGGATGTAAAT+TGG + chr4.3:20110205-20110224 None:intergenic 20.0%
!!! TGTACAAATTTTGATTTTAC+AGG - chr4.3:20110712-20110731 MS.gene70386:CDS 20.0%
!!! TTTATCATTAGTTTTAGCAA+AGG + chr4.3:20111507-20111526 None:intergenic 20.0%
! AAATTGAAAACAGGAAAGAA+TGG + chr4.3:20110403-20110422 None:intergenic 25.0%
! ACCTATAAAAATTATAGGAG+AGG + chr4.3:20111101-20111120 None:intergenic 25.0%
! AGGATCTAATTATATGAGTA+TGG - chr4.3:20112040-20112059 MS.gene70386:CDS 25.0%
! ATTAAATCATTGGCAGTTAT+TGG - chr4.3:20111018-20111037 MS.gene70386:intron 25.0%
! CAAAAGGAAATCCAAATTAT+TGG + chr4.3:20111664-20111683 None:intergenic 25.0%
! CACCAAACATTAACATATTT+AGG - chr4.3:20109524-20109543 MS.gene70386:intron 25.0%
! CCTATAAAAATTATAGGAGA+GGG + chr4.3:20111100-20111119 None:intergenic 25.0%
! GAATTCTCATTCCAATAATT+TGG - chr4.3:20111650-20111669 MS.gene70386:CDS 25.0%
! TATCATATCATGCATGTTAA+TGG - chr4.3:20109401-20109420 MS.gene70386:CDS 25.0%
! TCCCTAAATATGTTAATGTT+TGG + chr4.3:20109529-20109548 None:intergenic 25.0%
! TTACACAATCACATATTCAT+AGG - chr4.3:20110586-20110605 MS.gene70386:CDS 25.0%
!! ATAAAATCACAAGCATTTTG+TGG - chr4.3:20111522-20111541 MS.gene70386:intron 25.0%
!! CATATTTGCTAACAAGTAAA+GGG + chr4.3:20109591-20109610 None:intergenic 25.0%
!! TAAAATCACAAGCATTTTGT+GGG - chr4.3:20111523-20111542 MS.gene70386:intron 25.0%
!! TTTTCCATTTACTTGATTGT+AGG + chr4.3:20109922-20109941 None:intergenic 25.0%
!!! AATTTTTTAATTCAGGTGGA+AGG - chr4.3:20112075-20112094 MS.gene70386:CDS 25.0%
!!! AGCTTCTTTAGAATTATACA+AGG - chr4.3:20110666-20110685 MS.gene70386:CDS 25.0%
AAAATCTGTATGTTCTACCA+GGG + chr4.3:20112187-20112206 None:intergenic 30.0%
AAAGGTGATGTATATTTGCA+TGG + chr4.3:20111209-20111228 None:intergenic 30.0%
AAATATACATCACCTTTGCA+AGG - chr4.3:20111212-20111231 MS.gene70386:intron 30.0%
AATGAGAATTCTGTGATATG+AGG + chr4.3:20111641-20111660 None:intergenic 30.0%
ACTTTGTCTACATATGATTG+TGG + chr4.3:20112119-20112138 None:intergenic 30.0%
AGTGAGATACAAGAATTAAG+AGG + chr4.3:20110027-20110046 None:intergenic 30.0%
CAAAATAAACTCATGTTTGC+TGG + chr4.3:20110344-20110363 None:intergenic 30.0%
CATATAATTAGATCCTAGTG+AGG + chr4.3:20112036-20112055 None:intergenic 30.0%
CATGAATGAAACCACTATTT+AGG + chr4.3:20111917-20111936 None:intergenic 30.0%
GTCGTTCAATCTTGATTTAA+TGG - chr4.3:20111790-20111809 MS.gene70386:intron 30.0%
TAAAATCTGTATGTTCTACC+AGG + chr4.3:20112188-20112207 None:intergenic 30.0%
TAGAGAACAAAAACACTGTT+TGG + chr4.3:20112430-20112449 None:intergenic 30.0%
TGCCAAAGCTATTAAATCAT+TGG - chr4.3:20111008-20111027 MS.gene70386:intron 30.0%
TGCCAATGATTTAATAGCTT+TGG + chr4.3:20111013-20111032 None:intergenic 30.0%
TGCTTGAAAATTGTGACAAA+AGG + chr4.3:20111680-20111699 None:intergenic 30.0%
TGTCGCAAAATTATTGTAGA+CGG + chr4.3:20110827-20110846 None:intergenic 30.0%
TGTTCCTACAATCAAGTAAA+TGG - chr4.3:20109915-20109934 MS.gene70386:intron 30.0%
TGTTTGTAAAGATTTGAGTG+TGG - chr4.3:20112550-20112569 MS.gene70386:CDS 30.0%
TTGGGATTCCAAAATATGAA+TGG - chr4.3:20109224-20109243 MS.gene70386:CDS 30.0%
TTGTTCACTGTAATTCTATC+CGG - chr4.3:20110140-20110159 MS.gene70386:CDS 30.0%
! ATAACACCTTTAAGAAGATC+AGG + chr4.3:20109960-20109979 None:intergenic 30.0%
! CCCTCTCCTATAATTTTTAT+AGG - chr4.3:20111097-20111116 MS.gene70386:CDS 30.0%
! GCATATTTGCTAACAAGTAA+AGG + chr4.3:20109592-20109611 None:intergenic 30.0%
! TAACACCTTTAAGAAGATCA+GGG + chr4.3:20109959-20109978 None:intergenic 30.0%
!! AACAAGTTCTAAAACTTTGC+AGG - chr4.3:20111179-20111198 MS.gene70386:intron 30.0%
!! AGCTAGTTAATGTGTTTTTG+AGG - chr4.3:20109782-20109801 MS.gene70386:intron 30.0%
!! ATTTCAAGTTTGTAGCAACT+TGG + chr4.3:20111818-20111837 None:intergenic 30.0%
!! GTGACTTACATTTTGAAGAA+CGG + chr4.3:20112325-20112344 None:intergenic 30.0%
!! GTTTTATGGCTATTTTGTGT+AGG - chr4.3:20109441-20109460 MS.gene70386:CDS 30.0%
!! TTAATAGCTTTGGCATTAAG+AGG + chr4.3:20111003-20111022 None:intergenic 30.0%
!! TTCGAAAAAGTACTCTTAAC+AGG - chr4.3:20112494-20112513 MS.gene70386:CDS 30.0%
AAAGAAGCTGCAATGAGAAT+AGG + chr4.3:20109337-20109356 None:intergenic 35.0%
ACATATTTAGGGATCCAAGA+TGG - chr4.3:20109536-20109555 MS.gene70386:intron 35.0%
AGAATTATTGGAACCTAGTG+GGG + chr4.3:20111949-20111968 None:intergenic 35.0%
ATATTTAGGGATCCAAGATG+GGG - chr4.3:20109538-20109557 MS.gene70386:intron 35.0%
ATGCAGTAAGACGAAATTGT+TGG - chr4.3:20111707-20111726 MS.gene70386:CDS 35.0%
ATGTAGTTTACCTGCTAGAA+TGG + chr4.3:20110557-20110576 None:intergenic 35.0%
ATTGTAGACGGCATTGTTAA+TGG + chr4.3:20110815-20110834 None:intergenic 35.0%
CAAAAACTAATTCCTCAACC+CGG + chr4.3:20110162-20110181 None:intergenic 35.0%
CAAACAGAACAAAGAAACAG+AGG + chr4.3:20108997-20109016 None:intergenic 35.0%
CAAACATGATCATCAGCTAA+AGG + chr4.3:20112302-20112321 None:intergenic 35.0%
CAATGACCAATATGAACATG+AGG - chr4.3:20112141-20112160 MS.gene70386:intron 35.0%
CATATTTAGGGATCCAAGAT+GGG - chr4.3:20109537-20109556 MS.gene70386:intron 35.0%
CATTCATGCATTTAGCAACT+TGG + chr4.3:20111870-20111889 None:intergenic 35.0%
CTCAACTTTCGAGCATAAAT+TGG - chr4.3:20112250-20112269 MS.gene70386:CDS 35.0%
CTCATGTTCATATTGGTCAT+TGG + chr4.3:20112143-20112162 None:intergenic 35.0%
CTTGTTTCAAACCATAGGAA+AGG - chr4.3:20109366-20109385 MS.gene70386:CDS 35.0%
GAGAATTATTGGAACCTAGT+GGG + chr4.3:20111950-20111969 None:intergenic 35.0%
GGATTCCAAAATATGAATGG+TGG - chr4.3:20109227-20109246 MS.gene70386:CDS 35.0%
GTGGCAAATGGAAACTAAAT+GGG - chr4.3:20109982-20110001 MS.gene70386:intron 35.0%
TCAATCACACAGCTCTTAAA+AGG + chr4.3:20109873-20109892 None:intergenic 35.0%
TGAAGACAAGCTATAGAATG+CGG - chr4.3:20110087-20110106 MS.gene70386:CDS 35.0%
TGAGAATTATTGGAACCTAG+TGG + chr4.3:20111951-20111970 None:intergenic 35.0%
TGTTCACTGTAATTCTATCC+GGG - chr4.3:20110141-20110160 MS.gene70386:CDS 35.0%
TTCAAACCATAGGAAAGGTA+AGG - chr4.3:20109371-20109390 MS.gene70386:CDS 35.0%
TTGTTAGCAAATATGCAGCA+GGG - chr4.3:20109596-20109615 MS.gene70386:intron 35.0%
TTTAAGAGCTGTGTGATTGA+TGG - chr4.3:20109873-20109892 MS.gene70386:intron 35.0%
! ATACATTACCACAGCATTGA+AGG + chr4.3:20109740-20109759 None:intergenic 35.0%
! ATGAAGCACATGTTTTCCTA+GGG + chr4.3:20112603-20112622 None:intergenic 35.0%
! ATTGGTTAAAGCACCACAAT+TGG - chr4.3:20112268-20112287 MS.gene70386:CDS 35.0%
! CATTTAGTTTCCATTTGCCA+CGG + chr4.3:20109983-20110002 None:intergenic 35.0%
! CGTTTTTCCAATGTTATACC+TGG - chr4.3:20109292-20109311 MS.gene70386:CDS 35.0%
! CTTTCCTATGGTTTGAAACA+AGG + chr4.3:20109368-20109387 None:intergenic 35.0%
! TCAGACCACCATTCATATTT+TGG + chr4.3:20109235-20109254 None:intergenic 35.0%
! TTGAACTGTGGAAGTTTTCT+TGG - chr4.3:20110742-20110761 MS.gene70386:CDS 35.0%
!! TATGATGTTGATGACTGGAA+AGG - chr4.3:20109700-20109719 MS.gene70386:intron 35.0%
!! TTATGGCTATTTTGTGTAGG+TGG - chr4.3:20109444-20109463 MS.gene70386:CDS 35.0%
AAAGGAACAGACACCAATTG+TGG + chr4.3:20112284-20112303 None:intergenic 40.0%
AAGCAACCTTATGGAAACCT+TGG - chr4.3:20110883-20110902 MS.gene70386:intron 40.0%
AAGGTTGACATTGCAAGAGA+AGG - chr4.3:20109162-20109181 MS.gene70386:CDS 40.0%
AATTATTGGAACCTAGTGGG+GGG + chr4.3:20111947-20111966 None:intergenic 40.0%
ACAGGATTGGATTTGAACTG+TGG - chr4.3:20110730-20110749 MS.gene70386:CDS 40.0%
ACCTCAGGATCAAGAACAAA+GGG - chr4.3:20112390-20112409 MS.gene70386:CDS 40.0%
ACCTTCGTAGTTTCCAATCA+TGG + chr4.3:20111067-20111086 None:intergenic 40.0%
ACGGCTTACAACCTAAATAG+TGG - chr4.3:20111903-20111922 MS.gene70386:CDS 40.0%
ACTGTCTTCTCATTTGGAGA+TGG - chr4.3:20112218-20112237 MS.gene70386:intron 40.0%
AGAAATTGAGTGTGGATGCA+AGG - chr4.3:20109122-20109141 MS.gene70386:CDS 40.0%
AGGGTTAACATTCTTCTTCC+GGG - chr4.3:20111392-20111411 MS.gene70386:intron 40.0%
ATCACACAGCTCTTAAAAGG+TGG + chr4.3:20109870-20109889 None:intergenic 40.0%
ATCAGGCCTCATGTTCATAT+TGG + chr4.3:20112150-20112169 None:intergenic 40.0%
ATGCGTCTAGGTTTCTTTGA+TGG - chr4.3:20110850-20110869 MS.gene70386:CDS 40.0%
ATTCTTGCCATAATGTCTGG+AGG - chr4.3:20111467-20111486 MS.gene70386:intron 40.0%
CAGGGTTAACATTCTTCTTC+CGG - chr4.3:20111391-20111410 MS.gene70386:intron 40.0%
CATCAACAGCAGAATTCACA+AGG + chr4.3:20109195-20109214 None:intergenic 40.0%
CCATAGCTGATGTCATCTTT+GGG - chr4.3:20111576-20111595 MS.gene70386:intron 40.0%
CGTGGCAAATGGAAACTAAA+TGG - chr4.3:20109981-20110000 MS.gene70386:intron 40.0%
CTGCAACAAGAAATTGAGTG+TGG - chr4.3:20109114-20109133 MS.gene70386:CDS 40.0%
CTGTTGATGTAAGCAGACTT+GGG - chr4.3:20109206-20109225 MS.gene70386:CDS 40.0%
CTTCATGGAGTCTCTTACAT+TGG - chr4.3:20109259-20109278 MS.gene70386:CDS 40.0%
CTTGTTAGCAAATATGCAGC+AGG - chr4.3:20109595-20109614 MS.gene70386:intron 40.0%
GAAATTGAGTGTGGATGCAA+GGG - chr4.3:20109123-20109142 MS.gene70386:CDS 40.0%
GAATTATTGGAACCTAGTGG+GGG + chr4.3:20111948-20111967 None:intergenic 40.0%
GACATTATGGCAAGAATCAC+AGG + chr4.3:20111464-20111483 None:intergenic 40.0%
GAGAAACCTTACCTTTCCTA+TGG + chr4.3:20109380-20109399 None:intergenic 40.0%
GAGAATAGGCATAGGAAAAC+TGG + chr4.3:20109323-20109342 None:intergenic 40.0%
GATCCTGAGGTGAATATCAA+AGG + chr4.3:20112381-20112400 None:intergenic 40.0%
GATTGTGGATACCATGTCAT+GGG + chr4.3:20112104-20112123 None:intergenic 40.0%
GGAAAACATGTGCTTCATGT+AGG - chr4.3:20112605-20112624 MS.gene70386:CDS 40.0%
GGTCTACAACAAACTGATGA+TGG - chr4.3:20109628-20109647 MS.gene70386:intron 40.0%
GTCGTTCGATCTTGATCTAA+TGG - chr4.3:20111842-20111861 MS.gene70386:intron 40.0%
GTGATTCTTGCCATAATGTC+TGG - chr4.3:20111464-20111483 MS.gene70386:intron 40.0%
TAGCCTTTGATATTCACCTC+AGG - chr4.3:20112375-20112394 MS.gene70386:CDS 40.0%
TGAATGCGTGGAAATTGTGA+CGG - chr4.3:20111884-20111903 MS.gene70386:CDS 40.0%
TGACAGCACCTTCTGTATAT+CGG + chr4.3:20110768-20110787 None:intergenic 40.0%
TGATTGTGGATACCATGTCA+TGG + chr4.3:20112105-20112124 None:intergenic 40.0%
TGTAAGTCACTCGATGTTGT+TGG - chr4.3:20112335-20112354 MS.gene70386:CDS 40.0%
TTGACATTGCAAGAGAAGGT+TGG - chr4.3:20109166-20109185 MS.gene70386:CDS 40.0%
TTGCTAAATGCATGAATGCG+TGG - chr4.3:20111872-20111891 MS.gene70386:CDS 40.0%
TTTCCATAAGGTTGCTTGCT+AGG + chr4.3:20110880-20110899 None:intergenic 40.0%
TTTCTTGGCCGATATACAGA+AGG - chr4.3:20110757-20110776 MS.gene70386:CDS 40.0%
TTTGCGACATTAATGCGTCT+AGG - chr4.3:20110838-20110857 MS.gene70386:CDS 40.0%
TTTGGACCAAGGTTTCCATA+AGG + chr4.3:20110892-20110911 None:intergenic 40.0%
! AAAGCCAACAAGTGTTTCTG+AGG + chr4.3:20112476-20112495 None:intergenic 40.0%
! AACAGGAAAATCAGAAGCAC+TGG - chr4.3:20112511-20112530 MS.gene70386:CDS 40.0%
! AGGTGTTCTGTTTTCAACAG+AGG + chr4.3:20108960-20108979 None:intergenic 40.0%
! ATCACAAGCATTTTGTGGGT+TGG - chr4.3:20111527-20111546 MS.gene70386:intron 40.0%
! CATGAAGCACATGTTTTCCT+AGG + chr4.3:20112604-20112623 None:intergenic 40.0%
! GCTTCCTTGTTTCAAACCAT+AGG - chr4.3:20109361-20109380 MS.gene70386:CDS 40.0%
! GTATACTTGATGACCTCACT+AGG - chr4.3:20112020-20112039 MS.gene70386:CDS 40.0%
! GTCAGTGAGATTGACTTACT+TGG + chr4.3:20111611-20111630 None:intergenic 40.0%
! TTTACCTGCTAGAATGGACT+TGG + chr4.3:20110551-20110570 None:intergenic 40.0%
! TTTTGTGTAGGTGGTTTCGA+CGG - chr4.3:20109453-20109472 MS.gene70386:CDS 40.0%
!! ATTTGCACCGACTACAATCA+CGG + chr4.3:20111345-20111364 None:intergenic 40.0%
!! CTGCATATGATGTTGATGAC+TGG - chr4.3:20109695-20109714 MS.gene70386:intron 40.0%
!! CTTCTTAAAGGTGTTATCCG+TGG - chr4.3:20109963-20109982 MS.gene70386:intron 40.0%
!! GGTTGGCTGGTTTAACATAT+TGG - chr4.3:20109500-20109519 MS.gene70386:CDS 40.0%
!! GTGTTGCTTAAAAACTGTGC+AGG - chr4.3:20110970-20110989 MS.gene70386:intron 40.0%
!! TTGAGTGTGGTTGATGAACT+TGG - chr4.3:20112563-20112582 MS.gene70386:CDS 40.0%
!!! ATTTTGTGGGTTGGTTATCC+TGG - chr4.3:20111536-20111555 MS.gene70386:intron 40.0%
AACCTGTAATTCGCCAATGC+TGG + chr4.3:20109094-20109113 None:intergenic 45.0%
AAGTTGCAAATGCAGCCAAG+GGG - chr4.3:20111438-20111457 MS.gene70386:intron 45.0%
AATCATGGCCCTAGTAGCAT+TGG + chr4.3:20111052-20111071 None:intergenic 45.0%
AATGCTACTAGGGCCATGAT+TGG - chr4.3:20111051-20111070 MS.gene70386:CDS 45.0%
ACAAGTAAAGGGTCTTCTCC+TGG + chr4.3:20109580-20109599 None:intergenic 45.0%
ACATTGGAAAAACGAGTCCC+TGG + chr4.3:20109286-20109305 None:intergenic 45.0%
AGCAAAGCTTGTGGGAACTA+AGG + chr4.3:20111246-20111265 None:intergenic 45.0%
AGCAGCAACCTTAAGCTTGT+TGG + chr4.3:20109659-20109678 None:intergenic 45.0%
AGGCGAAAACTGCAGATGTT+TGG + chr4.3:20109054-20109073 None:intergenic 45.0%
ATAGGAAAACTGGTTGCTCC+AGG + chr4.3:20109313-20109332 None:intergenic 45.0%
ATTCGCCAATGCTGGATTCT+TGG + chr4.3:20109086-20109105 None:intergenic 45.0%
CACAGCTCTTAAAAGGTGGT+TGG + chr4.3:20109866-20109885 None:intergenic 45.0%
CACCTCAGGATCAAGAACAA+AGG - chr4.3:20112389-20112408 MS.gene70386:CDS 45.0%
CAGAGGAAAACAGAGACGTT+AGG + chr4.3:20108980-20108999 None:intergenic 45.0%
CCCAAAGATGACATCAGCTA+TGG + chr4.3:20111579-20111598 None:intergenic 45.0%
CGGTGCAAATCTTGCAATAG+AGG - chr4.3:20111355-20111374 MS.gene70386:intron 45.0%
CTGTAATTCTATCCGGGTTG+AGG - chr4.3:20110147-20110166 MS.gene70386:CDS 45.0%
GAAGTTGCAAATGCAGCCAA+GGG - chr4.3:20111437-20111456 MS.gene70386:intron 45.0%
GAGTCTCTTACATTGGTCCA+GGG - chr4.3:20109266-20109285 MS.gene70386:CDS 45.0%
GATCCTAGCAAGCAACCTTA+TGG - chr4.3:20110874-20110893 MS.gene70386:intron 45.0%
GATGCAACCGTGATTGTAGT+CGG - chr4.3:20111335-20111354 MS.gene70386:intron 45.0%
GCAATGTCAACCTTCTCACA+AGG + chr4.3:20109156-20109175 None:intergenic 45.0%
GCCATAGCTGATGTCATCTT+TGG - chr4.3:20111575-20111594 MS.gene70386:intron 45.0%
GCCATGATTGGAAACTACGA+AGG - chr4.3:20111063-20111082 MS.gene70386:CDS 45.0%
GCTGACCCTGATCTTCTTAA+AGG - chr4.3:20109951-20109970 MS.gene70386:intron 45.0%
GCTGCAATGAGAATAGGCAT+AGG + chr4.3:20109331-20109350 None:intergenic 45.0%
GCTGTTGATGTAAGCAGACT+TGG - chr4.3:20109205-20109224 MS.gene70386:CDS 45.0%
GGGGAAACTGTCTTCTCATT+TGG - chr4.3:20112212-20112231 MS.gene70386:intron 45.0%
GGTTGCTCCAGGTATAACAT+TGG + chr4.3:20109302-20109321 None:intergenic 45.0%
TCCCAATGCCAATGCTACTA+GGG - chr4.3:20111041-20111060 MS.gene70386:intron 45.0%
TCCCTTTGTTCTTGATCCTG+AGG + chr4.3:20112394-20112413 None:intergenic 45.0%
TGAAGTTGCAAATGCAGCCA+AGG - chr4.3:20111436-20111455 MS.gene70386:intron 45.0%
TGCACCTCAGAAACACTTGT+TGG - chr4.3:20112469-20112488 MS.gene70386:CDS 45.0%
TGGAGACTCCAACAAGCTTA+AGG - chr4.3:20109648-20109667 MS.gene70386:intron 45.0%
TGTTGCCAAGAATCCAGCAT+TGG - chr4.3:20109078-20109097 MS.gene70386:CDS 45.0%
TTGTGGGAACTAAGGCTGTT+AGG + chr4.3:20111238-20111257 None:intergenic 45.0%
! AAGGTGTTATCCGTGGCAAA+TGG - chr4.3:20109970-20109989 MS.gene70386:intron 45.0%
! GCATTGGTGCATTGAACATC+AGG + chr4.3:20111278-20111297 None:intergenic 45.0%
! GCTGAAGTGCAGACATCTTT+TGG + chr4.3:20110910-20110929 None:intergenic 45.0%
! TGCAGACATCTTTTGGACCA+AGG + chr4.3:20110903-20110922 None:intergenic 45.0%
! TGCTGAGGCTGCAATCTTTT+TGG + chr4.3:20111315-20111334 None:intergenic 45.0%
! TTTGCCACACTTTTGCTGAG+TGG - chr4.3:20109013-20109032 MS.gene70386:CDS 45.0%
!! ATCCAGCATTGGCGAATTAC+AGG - chr4.3:20109089-20109108 MS.gene70386:CDS 45.0%
AAGGCTGTTAGGCCTTGCAA+AGG + chr4.3:20111227-20111246 None:intergenic 50.0%
AATCACGGTTGCATCTGCTG+AGG + chr4.3:20111330-20111349 None:intergenic 50.0%
ACATTACACCAAGACCCCTG+AGG - chr4.3:20110516-20110535 MS.gene70386:intron 50.0%
ACCACCACTCAGCAAAAGTG+TGG + chr4.3:20109020-20109039 None:intergenic 50.0%
ACTAACTGTTGCTGCTGTCC+CGG + chr4.3:20111413-20111432 None:intergenic 50.0%
AGAGGCAGAGAGTCATGACA+GGG - chr4.3:20111373-20111392 MS.gene70386:intron 50.0%
AGATCAGGGTCAGCACAAGT+CGG + chr4.3:20109945-20109964 None:intergenic 50.0%
CAAGAGCAATGCACAACGTC+GGG - chr4.3:20109479-20109498 MS.gene70386:CDS 50.0%
CATAATGTCTGGAGGAGGCA+TGG - chr4.3:20111475-20111494 MS.gene70386:intron 50.0%
CATGAAAATTGCCCCCCACT+AGG - chr4.3:20111933-20111952 MS.gene70386:CDS 50.0%
CATGCCTCCTCCAGACATTA+TGG + chr4.3:20111477-20111496 None:intergenic 50.0%
CTTGCCATAATGTCTGGAGG+AGG - chr4.3:20111470-20111489 MS.gene70386:intron 50.0%
GCAAGAGCAATGCACAACGT+CGG - chr4.3:20109478-20109497 MS.gene70386:CDS 50.0%
GCGTTACACCTTCAATGCTG+TGG - chr4.3:20109729-20109748 MS.gene70386:intron 50.0%
GCTGTCAAGCAAGGGCTTAT+AGG - chr4.3:20110781-20110800 MS.gene70386:CDS 50.0%
GGAAGAGGTCAAGAAACACC+AGG - chr4.3:20109559-20109578 MS.gene70386:intron 50.0%
GGAGTCTCTTACATTGGTCC+AGG - chr4.3:20109265-20109284 MS.gene70386:CDS 50.0%
GGCAACAGAAAAGTTGCCCT+AGG - chr4.3:20112584-20112603 MS.gene70386:CDS 50.0%
GGCATCATCTAGTGCAGCAT+TGG + chr4.3:20111294-20111313 None:intergenic 50.0%
GGGTGAAAGACCTTGTGAGA+AGG - chr4.3:20109143-20109162 MS.gene70386:CDS 50.0%
GTCCCAATGCCAATGCTACT+AGG - chr4.3:20111040-20111059 MS.gene70386:intron 50.0%
GTTGGTTATCCTGGAGAAGC+TGG - chr4.3:20111545-20111564 MS.gene70386:intron 50.0%
TAGAGGCAGAGAGTCATGAC+AGG - chr4.3:20111372-20111391 MS.gene70386:intron 50.0%
TATGCAGCAGGGTACGTGAA+AGG - chr4.3:20109607-20109626 MS.gene70386:intron 50.0%
TCTTGACCTCTTCCCCATCT+TGG + chr4.3:20109553-20109572 None:intergenic 50.0%
TGGATTCTTGGCAACATCGC+AGG + chr4.3:20109074-20109093 None:intergenic 50.0%
TGTCTGCACTTCAGCAAACC+AGG - chr4.3:20110915-20110934 MS.gene70386:intron 50.0%
! CAGGGGTCTTGGTGTAATGT+TGG + chr4.3:20110516-20110535 None:intergenic 50.0%
! TGGTGGTCTGAAGCACTTCA+TGG - chr4.3:20109244-20109263 MS.gene70386:CDS 50.0%
!! ACAGAAGGTGCTGTCAAGCA+AGG - chr4.3:20110772-20110791 MS.gene70386:CDS 50.0%
!! CAGAAGGTGCTGTCAAGCAA+GGG - chr4.3:20110773-20110792 MS.gene70386:CDS 50.0%
!! GCCCTAGTAGCATTGGCATT+GGG + chr4.3:20111045-20111064 None:intergenic 50.0%
ACAGCCAGCAGCAAAGCTTG+TGG + chr4.3:20111255-20111274 None:intergenic 55.0%
ACTTGGCTGCAGCTTCCTCA+GGG + chr4.3:20110534-20110553 None:intergenic 55.0%
AGCAATGCACAACGTCGGGT+TGG - chr4.3:20109483-20109502 MS.gene70386:CDS 55.0%
AGCTAGCTCGTGAAGCTGCA+AGG - chr4.3:20110938-20110957 MS.gene70386:intron 55.0%
AGGGATCCAAGATGGGGAAG+AGG - chr4.3:20109544-20109563 MS.gene70386:intron 55.0%
ATGAGGCCTGATCCTGCTAC+AGG - chr4.3:20112158-20112177 MS.gene70386:intron 55.0%
CAGCCAGCAGCAAAGCTTGT+GGG + chr4.3:20111254-20111273 None:intergenic 55.0%
CTCGTGAAGCTGCAAGGCAA+GGG - chr4.3:20110944-20110963 MS.gene70386:intron 55.0%
GCAGCCAAGTCCATTCTAGC+AGG - chr4.3:20110544-20110563 MS.gene70386:CDS 55.0%
GGTTATCCTGGAGAAGCTGG+TGG - chr4.3:20111548-20111567 MS.gene70386:intron 55.0%
GTGGAAGGCTACCCATGACA+TGG - chr4.3:20112090-20112109 MS.gene70386:CDS 55.0%
GTTCCCACAAGCTTTGCTGC+TGG - chr4.3:20111248-20111267 MS.gene70386:intron 55.0%
TGAGGTGCATTGTGCACTGC+AGG + chr4.3:20112458-20112477 None:intergenic 55.0%
! GCCACACTTTTGCTGAGTGG+TGG - chr4.3:20109016-20109035 MS.gene70386:CDS 55.0%
!! GGCCCTAGTAGCATTGGCAT+TGG + chr4.3:20111046-20111065 None:intergenic 55.0%
CAGCTTCACGAGCTAGCTCC+TGG + chr4.3:20110936-20110955 None:intergenic 60.0%
CTACCAGGGTAGCCTGTAGC+AGG + chr4.3:20112173-20112192 None:intergenic 60.0%
CTTGGCTGCAGCTTCCTCAG+GGG + chr4.3:20110533-20110552 None:intergenic 60.0%
GACTTGGCTGCAGCTTCCTC+AGG + chr4.3:20110535-20110554 None:intergenic 60.0%
GATCCTGCTACAGGCTACCC+TGG - chr4.3:20112167-20112186 MS.gene70386:intron 60.0%
GCTCGTGAAGCTGCAAGGCA+AGG - chr4.3:20110943-20110962 MS.gene70386:intron 60.0%
GGCAAGAATCACAGGCCCCT+TGG + chr4.3:20111456-20111475 None:intergenic 60.0%
GGGTAGCCTGTAGCAGGATC+AGG + chr4.3:20112167-20112186 None:intergenic 60.0%
GGTGCATTGTGCACTGCAGG+AGG + chr4.3:20112455-20112474 None:intergenic 60.0%
TGCAGCTTCCTCAGGGGTCT+TGG + chr4.3:20110527-20110546 None:intergenic 60.0%
!! ATGCACAACGTCGGGTTGGC+TGG - chr4.3:20109487-20109506 MS.gene70386:CDS 60.0%
GCAGCTCCACCAGCTTCTCC+AGG + chr4.3:20111557-20111576 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 20108953 20112661 20108953 ID=MS.gene70386
chr4.3 mRNA 20108953 20112661 20108953 ID=MS.gene70386.t1;Parent=MS.gene70386
chr4.3 exon 20112227 20112661 20112227 ID=MS.gene70386.t1.exon1;Parent=MS.gene70386.t1
chr4.3 CDS 20112227 20112661 20112227 ID=cds.MS.gene70386.t1;Parent=MS.gene70386.t1
chr4.3 exon 20111864 20112151 20111864 ID=MS.gene70386.t1.exon2;Parent=MS.gene70386.t1
chr4.3 CDS 20111864 20112151 20111864 ID=cds.MS.gene70386.t1;Parent=MS.gene70386.t1
chr4.3 exon 20111611 20111780 20111611 ID=MS.gene70386.t1.exon3;Parent=MS.gene70386.t1
chr4.3 CDS 20111611 20111780 20111611 ID=cds.MS.gene70386.t1;Parent=MS.gene70386.t1
chr4.3 exon 20111049 20111146 20111049 ID=MS.gene70386.t1.exon4;Parent=MS.gene70386.t1
chr4.3 CDS 20111049 20111146 20111049 ID=cds.MS.gene70386.t1;Parent=MS.gene70386.t1
chr4.3 exon 20110530 20110880 20110530 ID=MS.gene70386.t1.exon5;Parent=MS.gene70386.t1
chr4.3 CDS 20110530 20110880 20110530 ID=cds.MS.gene70386.t1;Parent=MS.gene70386.t1
chr4.3 exon 20110003 20110413 20110003 ID=MS.gene70386.t1.exon6;Parent=MS.gene70386.t1
chr4.3 CDS 20110003 20110413 20110003 ID=cds.MS.gene70386.t1;Parent=MS.gene70386.t1
chr4.3 exon 20108953 20109524 20108953 ID=MS.gene70386.t1.exon7;Parent=MS.gene70386.t1
chr4.3 CDS 20108953 20109524 20108953 ID=cds.MS.gene70386.t1;Parent=MS.gene70386.t1
Gene Sequence

>MS.gene70386

ATGGCCTCTGTTGAAAACAGAACACCTAACGTCTCTGTTTTCCTCTGTTTCTTTGTTCTGTTTGCCACACTTTTGCTGAGTGGTGGTCGAGTTTCGAGCCAAACATCTGCAGTTTTCGCCTGCGATGTTGCCAAGAATCCAGCATTGGCGAATTACAGGTTCTGCAACAAGAAATTGAGTGTGGATGCAAGGGTGAAAGACCTTGTGAGAAGGTTGACATTGCAAGAGAAGGTTGGTAACCTTGTGAATTCTGCTGTTGATGTAAGCAGACTTGGGATTCCAAAATATGAATGGTGGTCTGAAGCACTTCATGGAGTCTCTTACATTGGTCCAGGGACTCGTTTTTCCAATGTTATACCTGGAGCAACCAGTTTTCCTATGCCTATTCTCATTGCAGCTTCTTTCAATGCTTCCTTGTTTCAAACCATAGGAAAGGTAAGGTTTCTCTTATCATATCATGCATGTTAATGGTGTAAATAACAAATATTGTTTTATGGCTATTTTGTGTAGGTGGTTTCGACGGAAGCAAGAGCAATGCACAACGTCGGGTTGGCTGGTTTAACATATTGGTCACCAAACATTAACATATTTAGGGATCCAAGATGGGGAAGAGGTCAAGAAACACCAGGAGAAGACCCTTTACTTGTTAGCAAATATGCAGCAGGGTACGTGAAAGGTCTACAACAAACTGATGATGGAGACTCCAACAAGCTTAAGGTTGCTGCTTGTTGCAAACACTACACTGCATATGATGTTGATGACTGGAAAGGTGTTCAGCGTTACACCTTCAATGCTGTGGTAATGTATCAATATCATTGTTTGAAATGAAAGCTAGTTAATGTGTTTTTGAGGATTGTTTTAATTGTTGTTGATTTTGTTAGGTGACACAACAAGATTTAGATGACACATACCAACCACCTTTTAAGAGCTGTGTGATTGATGGAAATGTTGCTAGTGTTATGTGTTCCTACAATCAAGTAAATGGAAAACCGACTTGTGCTGACCCTGATCTTCTTAAAGGTGTTATCCGTGGCAAATGGAAACTAAATGGGTATCTTTTCATTTTTCAAACCTCTTAATTCTTGTATCTCACTCCATTCAAATATAAACAAAATATATTATCTCATACTTTTTTGAAGACAAGCTATAGAATGCGGCAACTTTAAAACTCTTGAGTGAGAACTTTGTTGTTCACTGTAATTCTATCCGGGTTGAGGAATTAGTTTTTGTAGTTGCGAACAAAGAATACCCAATTTACATCCAAAACAATTATCTTTTATATGAGAATAAAAAGATTGTTAGAAAATAAATATATATTAATTAAATGACATTTAGAAATAATATTATTAGATAGAGTGAAATCAAATAAGATTTATTTATATTTTAGACCAGCAAACATGAGTTTATTTTGCTTATATTGAAGATTTGAGAAAAATAATGATGTTTACCATTCTTTCCTGTTTTCAATTTTTTTATAATAAATATGAATATGTTGTTTATCTATGTGCTATGCAGATATATAGTCTCTGATTGTGACTCAGTAGATGTGCTTTTCAAAAACCAACATTACACCAAGACCCCTGAGGAAGCTGCAGCCAAGTCCATTCTAGCAGGTAAACTACATTCGAAAAGATTACACAATCACATATTCATAGGCATCAACAGTTGAATTGTAATTTTATTTAGATGATTCATTTGAAATTTAATTAGTGTAGCTTCTTTAGAATTATACAAGGCAACTATTTATTTATCATTTTTGTGTACAAATTTTGATTTTACAGGATTGGATTTGAACTGTGGAAGTTTTCTTGGCCGATATACAGAAGGTGCTGTCAAGCAAGGGCTTATAGGTGAAGCATCCATTAACAATGCCGTCTACAATAATTTTGCGACATTAATGCGTCTAGGTTTCTTTGATGGCGATCCTAGCAAGCAACCTTATGGAAACCTTGGTCCAAAAGATGTCTGCACTTCAGCAAACCAGGAGCTAGCTCGTGAAGCTGCAAGGCAAGGGATTGTGTTGCTTAAAAACTGTGCAGGATCATTGCCTCTTAATGCCAAAGCTATTAAATCATTGGCAGTTATTGGTCCCAATGCCAATGCTACTAGGGCCATGATTGGAAACTACGAAGGTATCAAATTTTCCCTCTCCTATAATTTTTATAGGTTAAATGTATAATATAGTTTGTTTTTGAAGTTGCATTGACATAATATTTAAGAAATACTAACAAGTTCTAAAACTTTGCAGGCATTCCATGCAAATATACATCACCTTTGCAAGGCCTAACAGCCTTAGTTCCCACAAGCTTTGCTGCTGGCTGTCCTGATGTTCAATGCACCAATGCTGCACTAGATGATGCCAAAAAGATTGCAGCCTCAGCAGATGCAACCGTGATTGTAGTCGGTGCAAATCTTGCAATAGAGGCAGAGAGTCATGACAGGGTTAACATTCTTCTTCCGGGACAGCAGCAACAGTTAGTTACTGAAGTTGCAAATGCAGCCAAGGGGCCTGTGATTCTTGCCATAATGTCTGGAGGAGGCATGGATGTTTCCTTTGCTAAAACTAATGATAAAATCACAAGCATTTTGTGGGTTGGTTATCCTGGAGAAGCTGGTGGAGCTGCCATAGCTGATGTCATCTTTGGGTATCATAATCCAAGTAAGTCAATCTCACTGACATGCTTTCCTCATATCACAGAATTCTCATTCCAATAATTTGGATTTCCTTTTGTCACAATTTTCAAGCACTCACGCATGCAGTAAGACGAAATTGTTGGATCAAACAACTTTGATTTTAAACTCGGTACATCAGCTTCAAAAACAAACTTGAAATTGTAGTCGTTCAATCTTGATTTAATGGCTCCAAGTTGCTACAAACTTGAAATTGTAGTCGTTCGATCTTGATCTAATGGCTCCAAGTTGCTAAATGCATGAATGCGTGGAAATTGTGACGGCTTACAACCTAAATAGTGGTTTCATTCATGAAAATTGCCCCCCACTAGGTTCCAATAATTCTCAATAATATGTTTATATATTAGCTGCATTAGCATATACACTTTTATATATTGTATACTTGATGACCTCACTAGGATCTAATTATATGAGTATGGTCTGCACAACATAATTTTTTAATTCAGGTGGAAGGCTACCCATGACATGGTATCCACAATCATATGTAGACAAAGTACCAATGACCAATATGAACATGAGGCCTGATCCTGCTACAGGCTACCCTGGTAGAACATACAGATTTTATAAAGGGGAAACTGTCTTCTCATTTGGAGATGGAATAAGCTACTCAACTTTCGAGCATAAATTGGTTAAAGCACCACAATTGGTGTCTGTTCCTTTAGCTGATGATCATGTTTGCCGTTCTTCAAAATGTAAGTCACTCGATGTTGTTGGCGAACATTGTCAAAACTTAGCCTTTGATATTCACCTCAGGATCAAGAACAAAGGGAAAATGAGCAGTAGCCAAACAGTGTTTTTGTTCTCTACTCCTCCTGCAGTGCACAATGCACCTCAGAAACACTTGTTGGCTTTCGAAAAAGTACTCTTAACAGGAAAATCAGAAGCACTGGTCAGTTTCAAAGTAGATGTTTGTAAAGATTTGAGTGTGGTTGATGAACTTGGCAACAGAAAAGTTGCCCTAGGAAAACATGTGCTTCATGTAGGAGACTTGAAGCATCCTTTAAGCGTGATGATTTAA

Protein sequence

>MS.gene70386.t1

MASVENRTPNVSVFLCFFVLFATLLLSGGRVSSQTSAVFACDVAKNPALANYRFCNKKLSVDARVKDLVRRLTLQEKVGNLVNSAVDVSRLGIPKYEWWSEALHGVSYIGPGTRFSNVIPGATSFPMPILIAASFNASLFQTIGKVVSTEARAMHNVGLAGLTYWSPNINIFRDPRWGRGQETPGEDPLLVSKYAAGYVKGLQQTDDGDSNKLKVAACCKHYTAYDVDDWKGVQRYTFNAVVTQQDLDDTYQPPFKSCVIDGNVASVMCSYNQVNGKPTCADPDLLKGVIRGKWKLNGYIVSDCDSVDVLFKNQHYTKTPEEAAAKSILAGLDLNCGSFLGRYTEGAVKQGLIGEASINNAVYNNFATLMRLGFFDGDPSKQPYGNLGPKDVCTSANQELAREAARQGIVLLKNCAGSLPLNAKAIKSLAVIGPNANATRAMIGNYEGIPCKYTSPLQGLTALVPTSFAAGCPDVQCTNAALDDAKKIAASADATVIVVGANLAIEAESHDRVNILLPGQQQQLVTEVANAAKGPVILAIMSGGGMDVSFAKTNDKITSILWVGYPGEAGGAAIADVIFGYHNPSGRLPMTWYPQSYVDKVPMTNMNMRPDPATGYPGRTYRFYKGETVFSFGDGISYSTFEHKLVKAPQLVSVPLADDHVCRSSKCKSLDVVGEHCQNLAFDIHLRIKNKGKMSSSQTVFLFSTPPAVHNAPQKHLLAFEKVLLTGKSEALVSFKVDVCKDLSVVDELGNRKVALGKHVLHVGDLKHPLSVMI