AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene051339


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051339.t1 MTR_4g094285 98.837 774 9 0 3 776 1 774 0.0 1592
MS.gene051339.t1 MTR_2g008240 85.161 775 114 1 3 776 1 775 0.0 1367
MS.gene051339.t1 MTR_1g087240 57.332 757 311 5 21 774 8 755 0.0 896
MS.gene051339.t1 MTR_7g109390 57.235 774 306 9 10 774 4 761 0.0 894
MS.gene051339.t1 MTR_2g034720 57.778 765 300 9 16 774 7 754 0.0 878
MS.gene051339.t1 MTR_1g106860 55.757 773 302 12 15 766 6 759 0.0 844
MS.gene051339.t1 MTR_5g030860 47.815 778 374 11 22 776 14 782 0.0 748
MS.gene051339.t1 MTR_3g074060 47.247 781 379 15 16 776 9 776 0.0 718
MS.gene051339.t1 MTR_5g062430 46.164 782 391 13 16 776 10 782 0.0 715
MS.gene051339.t1 MTR_5g062320 46.183 786 394 14 12 776 3 780 0.0 714
MS.gene051339.t1 MTR_5g062370 46.164 782 391 13 16 776 10 782 0.0 704
MS.gene051339.t1 MTR_5g062650 45.812 788 398 14 11 776 5 785 0.0 697
MS.gene051339.t1 MTR_5g062370 49.158 594 281 10 16 596 10 595 0.0 573
MS.gene051339.t1 MTR_6g028090 26.875 640 332 27 56 614 28 612 5.67e-40 157
MS.gene051339.t1 MTR_6g028120 27.414 642 332 28 53 614 6 593 7.71e-40 156
MS.gene051339.t1 MTR_6g028100 25.786 636 344 24 56 614 28 612 6.80e-39 154
MS.gene051339.t1 MTR_3g079750 27.625 619 354 24 56 614 28 612 7.11e-39 153
MS.gene051339.t1 MTR_6g028110 25.693 685 373 29 40 643 14 643 3.06e-37 149
MS.gene051339.t1 MTR_6g028110 25.802 655 351 28 40 614 14 613 1.43e-36 147
MS.gene051339.t1 MTR_3g462820 25.041 603 354 21 56 595 22 589 3.54e-35 142
MS.gene051339.t1 MTR_2g030000 27.068 665 364 26 56 650 30 643 1.40e-34 140
MS.gene051339.t1 MTR_7g086030 25.875 657 351 28 56 639 4 597 6.00e-34 138
MS.gene051339.t1 MTR_7g086030 25.875 657 351 28 56 639 29 622 1.56e-33 137
MS.gene051339.t1 MTR_5g069800 26.677 626 354 26 56 614 5 592 2.39e-33 136
MS.gene051339.t1 MTR_5g069740 25.884 622 352 24 56 614 5 580 6.49e-33 135
MS.gene051339.t1 MTR_7g086010 28.495 372 206 17 91 439 118 452 1.03e-23 105
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051339.t1 AT5G64570 71.483 782 204 4 7 776 10 784 0.0 1189
MS.gene051339.t1 AT5G09730 68.229 768 232 3 14 776 13 773 0.0 1125
MS.gene051339.t1 AT5G64570 73.046 627 162 2 156 776 1 626 0.0 995
MS.gene051339.t1 AT5G64570 73.898 590 141 3 7 590 10 592 0.0 907
MS.gene051339.t1 AT3G19620 56.275 757 317 7 20 766 6 758 0.0 883
MS.gene051339.t1 AT5G49360 57.723 764 305 10 21 774 15 770 0.0 868
MS.gene051339.t1 AT1G02640 54.809 759 336 4 17 774 6 758 0.0 868
MS.gene051339.t1 AT5G10560 47.656 768 361 9 41 774 30 790 0.0 744
MS.gene051339.t1 AT1G78060 47.340 752 370 11 42 776 25 767 0.0 723
MS.gene051339.t1 AT5G09700 66.598 482 155 2 301 776 45 526 0.0 689
MS.gene051339.t1 AT3G47050 26.942 605 363 23 53 605 7 584 3.05e-39 154
MS.gene051339.t1 AT3G47000 27.169 611 368 24 56 614 10 595 1.99e-38 152
MS.gene051339.t1 AT3G47040 24.733 655 374 24 56 645 10 610 1.29e-36 146
MS.gene051339.t1 AT3G47010 26.324 623 366 25 52 614 7 596 2.49e-36 145
MS.gene051339.t1 AT3G47010 25.645 620 373 22 52 614 7 595 7.76e-36 144
MS.gene051339.t1 AT5G04885 26.518 626 359 24 56 618 30 617 2.52e-35 143
MS.gene051339.t1 AT5G04885 26.518 626 359 24 56 618 30 617 2.52e-35 143
MS.gene051339.t1 AT5G04885 26.518 626 359 24 56 618 47 634 2.67e-35 143
MS.gene051339.t1 AT3G47040 24.478 670 382 25 56 645 10 635 2.36e-34 140
MS.gene051339.t1 AT3G62710 25.731 684 366 28 19 614 11 640 9.30e-34 138
MS.gene051339.t1 AT5G20940 26.572 636 363 26 43 614 18 613 2.88e-32 133
MS.gene051339.t1 AT3G47000 29.885 435 235 20 56 439 10 425 2.84e-31 128
MS.gene051339.t1 AT5G20950 26.034 653 377 28 40 627 90 701 1.10e-30 129
MS.gene051339.t1 AT5G20950 26.060 637 367 27 56 627 26 623 1.73e-30 128
MS.gene051339.t1 AT5G20950 26.060 637 367 27 56 627 26 623 1.73e-30 128
MS.gene051339.t1 AT3G47040 26.786 448 232 18 56 439 10 425 3.95e-30 124
MS.gene051339.t1 AT3G47010 26.915 457 252 18 52 451 7 438 1.19e-27 117
MS.gene051339.t1 AT3G47040 23.348 681 384 26 56 645 10 643 2.01e-25 112
MS.gene051339.t1 AT3G47050 28.713 303 161 11 53 312 7 297 2.31e-23 103
MS.gene051339.t1 AT3G47010 26.150 413 266 15 217 614 29 417 6.99e-23 102
MS.gene051339.t1 AT3G47000 26.225 408 273 15 217 614 29 418 2.26e-21 98.2

Find 189 sgRNAs with CRISPR-Local

Find 265 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGACCACCATTCATATTT+TGG 0.140699 4.1:+19428040 None:intergenic
CACCAAACATTAACATATTT+AGG 0.157012 4.1:-19427731 MS.gene051339:CDS
ATTAAATCATTGGCAGTTAT+TGG 0.184597 4.1:-19426236 MS.gene051339:CDS
CGTGGCAAATGGAAACTAAA+TGG 0.204423 4.1:-19427274 MS.gene051339:CDS
CTCAACTTTCGAGCATAAAT+TGG 0.211723 4.1:-19425001 MS.gene051339:CDS
GCTGACCCTGATCTTCTTAA+AGG 0.226486 4.1:-19427304 MS.gene051339:CDS
TGTTCCTACAATCAAGTAAA+TGG 0.245995 4.1:-19427340 MS.gene051339:CDS
GCTGAAGTGCAGACATCTTT+TGG 0.254948 4.1:+19426347 None:intergenic
TCTTGACCTCTTCCCCATCT+TGG 0.278328 4.1:+19427705 None:intergenic
TGCAGCTTCCTCAGGGGTCT+TGG 0.289885 4.1:+19426730 None:intergenic
GCCATAGCTGATGTCATCTT+TGG 0.300033 4.1:-19425679 MS.gene051339:CDS
TGCCAATGATTTAATAGCTT+TGG 0.304831 4.1:+19426244 None:intergenic
CATGCCTCCTCCAGACATTA+TGG 0.305665 4.1:+19425780 None:intergenic
ATTCGCCAATGCTGGATTCT+TGG 0.315695 4.1:+19428189 None:intergenic
GGGGAAACTGTCTTCTCATT+TGG 0.319056 4.1:-19425039 MS.gene051339:CDS
TCAATCACACAGCTCTTAAA+AGG 0.325703 4.1:+19427385 None:intergenic
ATTGTAGACGGCATTGTTAA+TGG 0.328849 4.1:+19426442 None:intergenic
ACCAAACATTAACATATTTA+GGG 0.344637 4.1:-19427730 MS.gene051339:CDS
TTAAATCATTGGCAGTTATT+GGG 0.348888 4.1:-19426235 MS.gene051339:CDS
AATCCAGCATTGGCGAATTA+CGG 0.359386 4.1:-19428184 MS.gene051339:CDS
TCAAATTCTCAAGGTCATAA+TGG 0.369386 4.1:-19428338 None:intergenic
ATCCAGCATTGGCGAATTAC+GGG 0.371963 4.1:-19428183 MS.gene051339:CDS
GACTTGGCTGCAGCTTCCTC+AGG 0.373722 4.1:+19426722 None:intergenic
TTTAAGAGCTGTGTGATTGA+TGG 0.379593 4.1:-19427382 MS.gene051339:CDS
GAGAATAGGCATAGGAAAAC+TGG 0.380578 4.1:+19427952 None:intergenic
GCTGTCAAGCAAGGGCTTAT+AGG 0.388682 4.1:-19426473 MS.gene051339:CDS
ATGCGTCTAGGTTTCTTTGA+TGG 0.391137 4.1:-19426404 MS.gene051339:CDS
ATTCTGTGGGTTGGCTATCC+TGG 0.392669 4.1:-19425718 MS.gene051339:CDS
GATCCTAGCAAGCAACCTTA+TGG 0.393133 4.1:-19426380 MS.gene051339:CDS
CCATAGCTGATGTCATCTTT+GGG 0.402935 4.1:-19425678 MS.gene051339:CDS
AGCAGCAACCTTAAGCTTGT+TGG 0.404848 4.1:+19427599 None:intergenic
TGCCAAAGCTATTAAATCAT+TGG 0.406948 4.1:-19426246 MS.gene051339:CDS
TTTCCATAAGGTTGCTTGCT+AGG 0.410934 4.1:+19426377 None:intergenic
TGGAGATTCCAACAAGCTTA+AGG 0.418052 4.1:-19427607 MS.gene051339:CDS
ACTAACTGTTGCTGCTGTCC+TGG 0.428145 4.1:+19425844 None:intergenic
TGACAGCACCTTCTGTATAT+CGG 0.431143 4.1:+19426489 None:intergenic
ATAACACCTTTAAGAAGATC+AGG 0.432414 4.1:+19427298 None:intergenic
ACCTTCGTAGTTTCCAATCA+TGG 0.434772 4.1:+19426190 None:intergenic
ATTGGTTAAAGCACCACAAT+TGG 0.441371 4.1:-19424983 MS.gene051339:CDS
ATACATTACCACAGCATTGA+AGG 0.443167 4.1:+19427518 None:intergenic
TGCACCTCAGAAACACTTGT+TGG 0.443221 4.1:-19424782 MS.gene051339:CDS
TTGTGGGAACTAAGGCTGTT+AGG 0.443745 4.1:+19426019 None:intergenic
AGGCGAAAACTGCAGATGTT+TGG 0.443791 4.1:+19428221 None:intergenic
GGCCCAATGCTAATGCTACT+AGG 0.444209 4.1:-19426214 MS.gene051339:CDS
AACCCGTAATTCGCCAATGC+TGG 0.444375 4.1:+19428181 None:intergenic
GTGATTCTTGCCATAATGTC+TGG 0.445969 4.1:-19425790 MS.gene051339:CDS
GCATTGGTGCATTGAACATC+AGG 0.448023 4.1:+19425979 None:intergenic
GTTGGCTATCCTGGAGAAGC+TGG 0.450796 4.1:-19425709 MS.gene051339:CDS
GGTTGGCTGGTTTAACATAT+TGG 0.452673 4.1:-19427755 MS.gene051339:CDS
CTCATGTTCATATTGGTCAT+TGG 0.453094 4.1:+19425111 None:intergenic
GTTCCCACAAGCTTTGCTGC+TGG 0.455205 4.1:-19426006 MS.gene051339:CDS
ATGCACAACGTCGGGTTGGC+TGG 0.455328 4.1:-19427768 MS.gene051339:CDS
TCCCTAAATATGTTAATGTT+TGG 0.457701 4.1:+19427729 None:intergenic
CAGCTTCACGAGCTAGCTCC+TGG 0.458313 4.1:+19426321 None:intergenic
CAAGAGCAATGCACAACGTC+GGG 0.459504 4.1:-19427776 MS.gene051339:CDS
AGGATTAACATACTTCTTCC+AGG 0.461097 4.1:-19425862 MS.gene051339:CDS
GACATTATGGCAAGAATCAC+AGG 0.461878 4.1:+19425793 None:intergenic
ACATATTTAGGGATCCAAGA+TGG 0.461963 4.1:-19427719 MS.gene051339:CDS
ATCCGGCCTCATGTTCATAT+TGG 0.462557 4.1:+19425104 None:intergenic
AAAGAAGCTGCAATGAGAAT+AGG 0.464509 4.1:+19427938 None:intergenic
TCCCTTTGTTCTTGATCCTG+AGG 0.465656 4.1:+19424860 None:intergenic
CGGTGCAAATCTTGCAATAG+AGG 0.465750 4.1:-19425899 MS.gene051339:CDS
GGGTAGCCTGTAGCAGGATC+CGG 0.467218 4.1:+19425087 None:intergenic
CTTGCTAGCAAATATGCAGC+AGG 0.468402 4.1:-19427660 MS.gene051339:CDS
TGTAAGTCGCTTGATGTTGT+TGG 0.471371 4.1:-19424916 MS.gene051339:CDS
CATATTTAGGGATCCAAGAT+GGG 0.473111 4.1:-19427718 MS.gene051339:CDS
CTTCATGGAGTCTCTAACAT+TGG 0.474694 4.1:-19428013 MS.gene051339:CDS
TGAGGTGCATTGTGCACTGC+AGG 0.474909 4.1:+19424796 None:intergenic
GCTGTTGATGTAAGCAGACT+TGG 0.476218 4.1:-19428067 MS.gene051339:CDS
GAGAAACCTTACCTTTCCTA+TGG 0.476556 4.1:+19427895 None:intergenic
TGGTGGTCTGAAGCACTTCA+TGG 0.476761 4.1:-19428028 MS.gene051339:CDS
AGCAAAGCTTGTGGGAACTA+AGG 0.478113 4.1:+19426011 None:intergenic
ACCTCAGGATCAAGAACAAA+GGG 0.481557 4.1:-19424861 MS.gene051339:CDS
CATATTTGCTAGCAAGTAAA+GGG 0.484061 4.1:+19427667 None:intergenic
TTTGGACCAAGGTTTCCATA+AGG 0.489120 4.1:+19426365 None:intergenic
GCATATTTGCTAGCAAGTAA+AGG 0.490578 4.1:+19427666 None:intergenic
TTGAGTGTGGTTGATGAACT+TGG 0.490808 4.1:-19424688 MS.gene051339:CDS
AAGGTGTTATCCGTGGCAAA+TGG 0.492172 4.1:-19427285 MS.gene051339:CDS
CTTTCCTATGGTTTGAAACA+AGG 0.492728 4.1:+19427907 None:intergenic
GGCATCGTCTAGTGCAGCAT+TGG 0.492888 4.1:+19425963 None:intergenic
CTACCAGGGTAGCCTGTAGC+AGG 0.493617 4.1:+19425081 None:intergenic
ATGAGGCCGGATCCTGCTAC+AGG 0.493861 4.1:-19425093 MS.gene051339:CDS
AGAAGTTGCAAATGTAGCTA+AGG 0.498193 4.1:-19425818 MS.gene051339:CDS
CTTTAAATCATCACGCTCAA+AGG 0.498511 4.1:+19424610 None:intergenic
AATGCTACTAGGGCCATGAT+TGG 0.501422 4.1:-19426203 MS.gene051339:CDS
GGTCTACAACAAACTGATGA+TGG 0.502433 4.1:-19427627 MS.gene051339:CDS
TTCGAGAAAGTACACTTGAC+AGG 0.502478 4.1:-19424757 MS.gene051339:CDS
TAGCCTTTGATATTCACCTC+AGG 0.509602 4.1:-19424876 MS.gene051339:CDS
TGTCTGCACTTCAGCAAACC+AGG 0.511708 4.1:-19426339 MS.gene051339:CDS
GCTTCCTTGTTTCAAACCAT+AGG 0.512430 4.1:-19427911 MS.gene051339:CDS
GTGGCAAATGGAAACTAAAT+GGG 0.513107 4.1:-19427273 MS.gene051339:intron
GCTCGTGAAGCTGCAAGGCA+AGG 0.513237 4.1:-19426311 MS.gene051339:CDS
ACTGTCTTCTCATTTGGAGA+TGG 0.513776 4.1:-19425033 MS.gene051339:CDS
GCAGCTCCACCAGCTTCTCC+AGG 0.518655 4.1:+19425700 None:intergenic
CTTGTTTCAAACCATAGGAA+AGG 0.519277 4.1:-19427906 MS.gene051339:intron
ATAGGAAAACTGGTTGCTCC+AGG 0.520085 4.1:+19427962 None:intergenic
TAAAATCTGTATGTTCTACC+AGG 0.524873 4.1:+19425066 None:intergenic
CAAACATGATCCTCAGCTAA+AGG 0.526437 4.1:+19424952 None:intergenic
CTCGTGAAGCTGCAAGGCAA+GGG 0.532764 4.1:-19426310 MS.gene051339:CDS
GCCCTAGTAGCATTAGCATT+GGG 0.533958 4.1:+19426212 None:intergenic
TTGGGATTCCAAAATATGAA+TGG 0.535603 4.1:-19428048 MS.gene051339:CDS
GCAAGTAAAGGGTCTTCTCC+TGG 0.538903 4.1:+19427678 None:intergenic
ATCACAAGCATTCTGTGGGT+TGG 0.539372 4.1:-19425727 MS.gene051339:CDS
GGAGTCTCTAACATTGGTCC+AGG 0.541530 4.1:-19428007 MS.gene051339:CDS
TGGATTCTTGGCAACATCGC+AGG 0.541711 4.1:+19428201 None:intergenic
GACAGGAAAATCAGAAGCAC+TGG 0.541961 4.1:-19424740 MS.gene051339:CDS
CAGCCAGCAGCAAAGCTTGT+GGG 0.542585 4.1:+19426003 None:intergenic
CAGAGGAAAACAGAGACGTT+AGG 0.545414 4.1:+19428295 None:intergenic
GGCTATCCTGGAGAAGCTGG+TGG 0.546561 4.1:-19425706 MS.gene051339:CDS
TGTCGCAAAATTATTGTAGA+CGG 0.546588 4.1:+19426430 None:intergenic
GCAGCCAAGTCTATTCTAGC+AGG 0.547377 4.1:-19426710 MS.gene051339:intron
ACTTGGCTGCAGCTTCCTCA+GGG 0.548953 4.1:+19426723 None:intergenic
GGTGTCTGTTCCTTTAGCTG+AGG 0.552719 4.1:-19424962 MS.gene051339:CDS
AGCTAGCTCGTGAAGCTGCA+AGG 0.553456 4.1:-19426316 MS.gene051339:CDS
GGCCCTAGTAGCATTAGCAT+TGG 0.555454 4.1:+19426211 None:intergenic
TTTACCTGCTAGAATAGACT+TGG 0.558324 4.1:+19426706 None:intergenic
ACAGAAGGTGCTGTCAAGCA+AGG 0.561917 4.1:-19426482 MS.gene051339:CDS
TTAATAGCTTTGGCATTCAG+AGG 0.562815 4.1:+19426254 None:intergenic
AAAAGATCACAAGCATTCTG+TGG 0.568704 4.1:-19425732 MS.gene051339:CDS
GATCCTGAGGTGAATATCAA+AGG 0.569135 4.1:+19424873 None:intergenic
AGGGATCCAAGATGGGGAAG+AGG 0.570000 4.1:-19427711 MS.gene051339:CDS
AAGGTTGACATTGCAAGAGA+AGG 0.572395 4.1:-19428110 MS.gene051339:CDS
AGCAATGCACAACGTCGGGT+TGG 0.573033 4.1:-19427772 MS.gene051339:CDS
AAGCAACCTTATGGAAACCT+TGG 0.575163 4.1:-19426371 MS.gene051339:CDS
GCCCAATGCTAATGCTACTA+GGG 0.577253 4.1:-19426213 MS.gene051339:CDS
TTGACATTGCAAGAGAAGGT+TGG 0.577392 4.1:-19428106 MS.gene051339:CDS
CACAGCTCTTAAAAGGTGGT+TGG 0.578720 4.1:+19427392 None:intergenic
CAGAAGGTGCTGTCAAGCAA+GGG 0.579821 4.1:-19426481 MS.gene051339:CDS
GGAAAACATATGCTTCATGT+AGG 0.580882 4.1:-19424646 MS.gene051339:CDS
TTTGCGACATTAATGCGTCT+AGG 0.581567 4.1:-19426416 MS.gene051339:CDS
CAGCATATGATGTTGATGAC+TGG 0.584387 4.1:-19427560 MS.gene051339:CDS
CACCTCAGGATCAAGAACAA+AGG 0.587124 4.1:-19424862 MS.gene051339:CDS
CATTTAGTTTCCATTTGCCA+CGG 0.587656 4.1:+19427275 None:intergenic
TTTCTTGGCCGATATACAGA+AGG 0.588531 4.1:-19426497 MS.gene051339:CDS
AAAGATCACAAGCATTCTGT+GGG 0.588555 4.1:-19425731 MS.gene051339:CDS
CCCAAAGATGACATCAGCTA+TGG 0.590854 4.1:+19425678 None:intergenic
GACCAATATGAACATGAGGC+CGG 0.590969 4.1:-19425106 MS.gene051339:CDS
AGAAATTGAGTGTGGATGCA+AGG 0.597818 4.1:-19428150 MS.gene051339:CDS
CTGTTGATGTAAGCAGACTT+GGG 0.597835 4.1:-19428066 MS.gene051339:CDS
TGTTGCCAAGAATCCAGCAT+TGG 0.599346 4.1:-19428194 MS.gene051339:CDS
TATGCAGCAGGGTACGTGAA+AGG 0.600652 4.1:-19427648 MS.gene051339:CDS
TAGAGGCAGAGAGTCATGAC+AGG 0.601562 4.1:-19425882 MS.gene051339:CDS
GGGTGAAAGACCTTGTGAGA+AGG 0.601719 4.1:-19428129 MS.gene051339:CDS
ATTTGCACCGACTACAATCA+CGG 0.602874 4.1:+19425912 None:intergenic
ACTTTGTCTACATATGATTG+TGG 0.603286 4.1:+19425135 None:intergenic
CATCAACAGCAGAATTCACA+AGG 0.603921 4.1:+19428080 None:intergenic
GGTTGCTCCAGGTATAACAT+TGG 0.604127 4.1:+19427973 None:intergenic
GAAGTTGCAAATGTAGCTAA+GGG 0.606098 4.1:-19425817 MS.gene051339:CDS
CTTCTTAAAGGTGTTATCCG+TGG 0.607358 4.1:-19427292 MS.gene051339:CDS
ACAGCCAGCAGCAAAGCTTG+TGG 0.607399 4.1:+19426002 None:intergenic
GCGTTACACCTTCAATGCTG+TGG 0.608802 4.1:-19427526 MS.gene051339:intron
CATAATGTCTGGAGGAGGCA+TGG 0.611672 4.1:-19425779 MS.gene051339:CDS
CTTGCCATAATGTCTGGAGG+AGG 0.615660 4.1:-19425784 MS.gene051339:CDS
AAAGGTGATGTATATTTGCA+TGG 0.623811 4.1:+19426048 None:intergenic
AAAGCCAACAAGTGTTTCTG+AGG 0.625434 4.1:+19424778 None:intergenic
GAAATTGAGTGTGGATGCAA+GGG 0.626342 4.1:-19428149 MS.gene051339:CDS
GCAAGAGCAATGCACAACGT+CGG 0.629064 4.1:-19427777 MS.gene051339:CDS
GATGCAACCGTGATTGTAGT+CGG 0.629741 4.1:-19425919 MS.gene051339:CDS
TGTTTGTAATGATTTGAGTG+TGG 0.631283 4.1:-19424701 MS.gene051339:CDS
GGCAACAGAAAAGTTGCCCT+AGG 0.635515 4.1:-19424667 MS.gene051339:CDS
TGATTGTGGATACCATGTCA+TGG 0.635666 4.1:+19425149 None:intergenic
GCTGCAATGAGAATAGGCAT+AGG 0.636909 4.1:+19427944 None:intergenic
AAATATACATCACCTTTGCA+AGG 0.638543 4.1:-19426042 MS.gene051339:CDS
ATCACACAGCTCTTAAAAGG+TGG 0.639170 4.1:+19427388 None:intergenic
AAAGGAACAGACACCAATTG+TGG 0.639642 4.1:+19424970 None:intergenic
ACAGGATTGGATTTGAACTG+TGG 0.643755 4.1:-19426524 MS.gene051339:intron
GATTGTGGATACCATGTCAT+GGG 0.644060 4.1:+19425150 None:intergenic
AAGGCTGTTAGGCCTTGCAA+AGG 0.647052 4.1:+19426030 None:intergenic
TAACACCTTTAAGAAGATCA+GGG 0.647148 4.1:+19427299 None:intergenic
GGATTCCAAAATATGAATGG+TGG 0.648983 4.1:-19428045 MS.gene051339:CDS
GATCCTGCTACAGGCTACCC+TGG 0.649738 4.1:-19425084 MS.gene051339:CDS
CAATGACCAATATGAACATG+AGG 0.652360 4.1:-19425110 MS.gene051339:CDS
CTTGGCTGCAGCTTCCTCAG+GGG 0.657652 4.1:+19426724 None:intergenic
ACCACAACTCAGCAAAAGTG+TGG 0.657846 4.1:+19428255 None:intergenic
GCAATGTCAACCTTCTCACA+AGG 0.660006 4.1:+19428119 None:intergenic
CAAACAGAACAAAGAAACAG+AGG 0.661188 4.1:+19428278 None:intergenic
AGATCAGGGTCAGCACAAGT+CGG 0.668758 4.1:+19427313 None:intergenic
AAAATCTGTATGTTCTACCA+GGG 0.669451 4.1:+19425067 None:intergenic
GGAAGAGGTCAAGAAACACC+AGG 0.670289 4.1:-19427696 MS.gene051339:CDS
ATATTTAGGGATCCAAGATG+GGG 0.672629 4.1:-19427717 MS.gene051339:CDS
GTGGAAGGCTACCCATGACA+TGG 0.674570 4.1:-19425161 MS.gene051339:CDS
TATGATGTTGATGACTGGAA+AGG 0.681867 4.1:-19427555 MS.gene051339:CDS
GGTGCATTGTGCACTGCAGG+AGG 0.684891 4.1:+19424799 None:intergenic
CTGCAACAAGAAATTGAGTG+TGG 0.685493 4.1:-19428158 MS.gene051339:CDS
GCCATGATTGGAAACTACGA+AGG 0.687224 4.1:-19426191 MS.gene051339:intron
AATCACGGTTGCATCTGCTG+AGG 0.690719 4.1:+19425927 None:intergenic
TTGCTAGCAAATATGCAGCA+GGG 0.692959 4.1:-19427659 MS.gene051339:CDS
ATTCTTGCCATAATGTCTGG+AGG 0.713271 4.1:-19425787 MS.gene051339:CDS
ACATTACACCAAGACCCCTG+AGG 0.763610 4.1:-19426738 MS.gene051339:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACTTTTAAATATTGTTTTA+TGG - chr4.1:19425109-19425128 MS.gene051339:CDS 10.0%
!!! ATATTTTGTTTATATTTGAA+TGG + chr4.1:19425732-19425751 None:intergenic 10.0%
!!! CATATAAAAGATAATTTTTT+TGG + chr4.1:19425898-19425917 None:intergenic 10.0%
!! CATATATTATTGAGAATTAT+TGG + chr4.1:19427644-19427663 None:intergenic 15.0%
!!! AATTTTTTTGGATGTAAATT+GGG + chr4.1:19425886-19425905 None:intergenic 15.0%
!!! ATTTTTCCTATAAAAGTTAT+AGG + chr4.1:19426789-19426808 None:intergenic 15.0%
!!! CAACTTAATTTTTTTTATTC+AGG - chr4.1:19427754-19427773 MS.gene051339:CDS 15.0%
!!! TAATTTTTTTGGATGTAAAT+TGG + chr4.1:19425887-19425906 None:intergenic 15.0%
!! AATGATAATTCTGTAATATG+AGG + chr4.1:19427324-19427343 None:intergenic 20.0%
!! ACCAAACATTAACATATTTA+GGG - chr4.1:19425207-19425226 MS.gene051339:intron 20.0%
!!! AAATTTTGATTTTACAGGAT+TGG - chr4.1:19426400-19426419 MS.gene051339:CDS 20.0%
!!! AACAACTTTGATTTTAAACT+CGG - chr4.1:19427417-19427436 MS.gene051339:CDS 20.0%
!!! AACATACAGATTTTATAAAG+GGG - chr4.1:19427879-19427898 MS.gene051339:intron 20.0%
!!! AGAACATACAGATTTTATAA+AGG - chr4.1:19427877-19427896 MS.gene051339:intron 20.0%
!!! CTTAATTTTTTTTATTCAGG+TGG - chr4.1:19427757-19427776 MS.gene051339:CDS 20.0%
!!! CTTTTTATTAGTTTTAGCAA+AGG + chr4.1:19427190-19427209 None:intergenic 20.0%
!!! GAACATACAGATTTTATAAA+GGG - chr4.1:19427878-19427897 MS.gene051339:intron 20.0%
!!! TGTACAAATTTTGATTTTAC+AGG - chr4.1:19426395-19426414 MS.gene051339:CDS 20.0%
! ATTAAATCATTGGCAGTTAT+TGG - chr4.1:19426701-19426720 MS.gene051339:intron 25.0%
! CACCAAACATTAACATATTT+AGG - chr4.1:19425206-19425225 MS.gene051339:intron 25.0%
! GAATTATCATTCCAATAACT+TGG - chr4.1:19427333-19427352 MS.gene051339:CDS 25.0%
! TCACTAGGATCTAATTATAT+GGG - chr4.1:19427720-19427739 MS.gene051339:CDS 25.0%
! TCCCTAAATATGTTAATGTT+TGG + chr4.1:19425211-19425230 None:intergenic 25.0%
! TTAAATCATTGGCAGTTATT+GGG - chr4.1:19426702-19426721 MS.gene051339:intron 25.0%
! TTACACAATCACATATTCAT+AGG - chr4.1:19426269-19426288 MS.gene051339:CDS 25.0%
!! TTTTCCATTTACTTGATTGT+AGG + chr4.1:19425604-19425623 None:intergenic 25.0%
!!! AGCTTCTTTAGAATTATACA+AGG - chr4.1:19426349-19426368 MS.gene051339:CDS 25.0%
!!! ATTTTTTTTATTCAGGTGGA+AGG - chr4.1:19427761-19427780 MS.gene051339:CDS 25.0%
!!! TAATTGCTGTTGATTTTGTT+AGG - chr4.1:19425494-19425513 MS.gene051339:intron 25.0%
AAAATCTGTATGTTCTACCA+GGG + chr4.1:19427873-19427892 None:intergenic 30.0%
AAAGGTGATGTATATTTGCA+TGG + chr4.1:19426892-19426911 None:intergenic 30.0%
AAATATACATCACCTTTGCA+AGG - chr4.1:19426895-19426914 MS.gene051339:intron 30.0%
AAGTCGAAAACAGAAAAGAA+TGG + chr4.1:19426086-19426105 None:intergenic 30.0%
ACTTTGTCTACATATGATTG+TGG + chr4.1:19427805-19427824 None:intergenic 30.0%
AGGATCTAATTATATGGGTA+TGG - chr4.1:19427725-19427744 MS.gene051339:CDS 30.0%
AGTGAGATACAAGAATTAAG+AGG + chr4.1:19425709-19425728 None:intergenic 30.0%
CAAAAGGAAATCCAAGTTAT+TGG + chr4.1:19427347-19427366 None:intergenic 30.0%
CAAAATAAACTCATGTTTGC+TGG + chr4.1:19426027-19426046 None:intergenic 30.0%
CATATAATTAGATCCTAGTG+AGG + chr4.1:19427721-19427740 None:intergenic 30.0%
CCTATAAAAGTTATAGGAGT+GGG + chr4.1:19426783-19426802 None:intergenic 30.0%
CTCACTAGGATCTAATTATA+TGG - chr4.1:19427719-19427738 MS.gene051339:CDS 30.0%
TAAAATCTGTATGTTCTACC+AGG + chr4.1:19427874-19427893 None:intergenic 30.0%
TAGAGAACAAAAACACTGTT+TGG + chr4.1:19428116-19428135 None:intergenic 30.0%
TATCATATCCTGCATGTTAA+TGG - chr4.1:19425066-19425085 MS.gene051339:CDS 30.0%
TATTTACACCATTAACATGC+AGG + chr4.1:19425077-19425096 None:intergenic 30.0%
TCCTATAAAAGTTATAGGAG+TGG + chr4.1:19426784-19426803 None:intergenic 30.0%
TGAAAACAAGCTATAGAATG+CGG - chr4.1:19425769-19425788 MS.gene051339:CDS 30.0%
TGCCAAAGCTATTAAATCAT+TGG - chr4.1:19426691-19426710 MS.gene051339:intron 30.0%
TGCCAATGATTTAATAGCTT+TGG + chr4.1:19426696-19426715 None:intergenic 30.0%
TGCTTGAAAATTGTGACAAA+AGG + chr4.1:19427363-19427382 None:intergenic 30.0%
TGTCGCAAAATTATTGTAGA+CGG + chr4.1:19426510-19426529 None:intergenic 30.0%
TGTTCCTACAATCAAGTAAA+TGG - chr4.1:19425597-19425616 MS.gene051339:intron 30.0%
TGTTTGTAATGATTTGAGTG+TGG - chr4.1:19428236-19428255 MS.gene051339:CDS 30.0%
TTGGGATTCCAAAATATGAA+TGG - chr4.1:19424889-19424908 MS.gene051339:CDS 30.0%
TTGTTCACTGTAATTCTATC+CGG - chr4.1:19425822-19425841 MS.gene051339:CDS 30.0%
! ATAACACCTTTAAGAAGATC+AGG + chr4.1:19425642-19425661 None:intergenic 30.0%
! ATGAAGCATATGTTTTCCTA+GGG + chr4.1:19428289-19428308 None:intergenic 30.0%
! CATATTTGCTAGCAAGTAAA+GGG + chr4.1:19425273-19425292 None:intergenic 30.0%
! CATTTTTCCAATGTTATACC+TGG - chr4.1:19424957-19424976 MS.gene051339:CDS 30.0%
! TAACACCTTTAAGAAGATCA+GGG + chr4.1:19425641-19425660 None:intergenic 30.0%
!! AACAAGTTCTAAAACTTTGC+AGG - chr4.1:19426862-19426881 MS.gene051339:intron 30.0%
!! AGCTAGTTAATGTGTTTTTG+AGG - chr4.1:19425464-19425483 MS.gene051339:intron 30.0%
!! ATTTCAAGTTTGTAGCAACT+TGG + chr4.1:19427501-19427520 None:intergenic 30.0%
!! GTTTTATGGCTATTTTGTGT+AGG - chr4.1:19425123-19425142 MS.gene051339:CDS 30.0%
AAAAGATCACAAGCATTCTG+TGG - chr4.1:19427205-19427224 MS.gene051339:intron 35.0%
AAAGAAGCTGCAATGAGAAT+AGG + chr4.1:19425002-19425021 None:intergenic 35.0%
AAAGATCACAAGCATTCTGT+GGG - chr4.1:19427206-19427225 MS.gene051339:intron 35.0%
ACATATTTAGGGATCCAAGA+TGG - chr4.1:19425218-19425237 MS.gene051339:intron 35.0%
ACATTGGAAAAATGAGTTCC+TGG + chr4.1:19424951-19424970 None:intergenic 35.0%
ACGGCTTACAACCTAAATAA+TGG - chr4.1:19427586-19427605 MS.gene051339:CDS 35.0%
AGAAGTTGCAAATGTAGCTA+AGG - chr4.1:19427119-19427138 MS.gene051339:intron 35.0%
AGAATTATTGGAACCTTGTG+GGG + chr4.1:19427632-19427651 None:intergenic 35.0%
AGGATTAACATACTTCTTCC+AGG - chr4.1:19427075-19427094 MS.gene051339:intron 35.0%
ATATTTAGGGATCCAAGATG+GGG - chr4.1:19425220-19425239 MS.gene051339:intron 35.0%
ATTGTAGACGGCATTGTTAA+TGG + chr4.1:19426498-19426517 None:intergenic 35.0%
CAAAAACTAATTCCTCAACC+CGG + chr4.1:19425844-19425863 None:intergenic 35.0%
CAAACAGAACAAAGAAACAG+AGG + chr4.1:19424662-19424681 None:intergenic 35.0%
CAATGACCAATATGAACATG+AGG - chr4.1:19427827-19427846 MS.gene051339:intron 35.0%
CATATTTAGGGATCCAAGAT+GGG - chr4.1:19425219-19425238 MS.gene051339:intron 35.0%
CATGAGCGAAACCATTATTT+AGG + chr4.1:19427600-19427619 None:intergenic 35.0%
CTCAACTTTCGAGCATAAAT+TGG - chr4.1:19427936-19427955 MS.gene051339:CDS 35.0%
CTCATGTTCATATTGGTCAT+TGG + chr4.1:19427829-19427848 None:intergenic 35.0%
CTTGTTTCAAACCATAGGAA+AGG - chr4.1:19425031-19425050 MS.gene051339:CDS 35.0%
GAAGTTGCAAATGTAGCTAA+GGG - chr4.1:19427120-19427139 MS.gene051339:intron 35.0%
GAGAATTATTGGAACCTTGT+GGG + chr4.1:19427633-19427652 None:intergenic 35.0%
GGAAAACATATGCTTCATGT+AGG - chr4.1:19428291-19428310 MS.gene051339:CDS 35.0%
GGATTCCAAAATATGAATGG+TGG - chr4.1:19424892-19424911 MS.gene051339:CDS 35.0%
GTCGTTCAATCTTGATCTAA+TGG - chr4.1:19427473-19427492 MS.gene051339:intron 35.0%
GTGGCAAATGGAAACTAAAT+GGG - chr4.1:19425664-19425683 MS.gene051339:intron 35.0%
TCAATCACACAGCTCTTAAA+AGG + chr4.1:19425555-19425574 None:intergenic 35.0%
TGAATGTGTGGAAATTGTGA+CGG - chr4.1:19427567-19427586 MS.gene051339:CDS 35.0%
TGAGAATTATTGGAACCTTG+TGG + chr4.1:19427634-19427653 None:intergenic 35.0%
TGTTCACTGTAATTCTATCC+GGG - chr4.1:19425823-19425842 MS.gene051339:CDS 35.0%
TTCAAACCATAGGAAAGGTA+AGG - chr4.1:19425036-19425055 MS.gene051339:CDS 35.0%
TTGCTAAATGCATGAATGTG+TGG - chr4.1:19427555-19427574 MS.gene051339:CDS 35.0%
TTTAAGAGCTGTGTGATTGA+TGG - chr4.1:19425555-19425574 MS.gene051339:intron 35.0%
TTTACCTGCTAGAATAGACT+TGG + chr4.1:19426234-19426253 None:intergenic 35.0%
! ATACATTACCACAGCATTGA+AGG + chr4.1:19425422-19425441 None:intergenic 35.0%
! ATCAAGCGACTTACATTTTG+AGG + chr4.1:19428016-19428035 None:intergenic 35.0%
! ATTGGTTAAAGCACCACAAT+TGG - chr4.1:19427954-19427973 MS.gene051339:CDS 35.0%
! CATGAAGCATATGTTTTCCT+AGG + chr4.1:19428290-19428309 None:intergenic 35.0%
! CATTTAGTTTCCATTTGCCA+CGG + chr4.1:19425665-19425684 None:intergenic 35.0%
! CCCACTCCTATAACTTTTAT+AGG - chr4.1:19426780-19426799 MS.gene051339:CDS 35.0%
! CTTTCCTATGGTTTGAAACA+AGG + chr4.1:19425033-19425052 None:intergenic 35.0%
! GCATATTTGCTAGCAAGTAA+AGG + chr4.1:19425274-19425293 None:intergenic 35.0%
! TCAGACCACCATTCATATTT+TGG + chr4.1:19424900-19424919 None:intergenic 35.0%
! TTGAACTGTGGAAGTTTTCT+TGG - chr4.1:19426425-19426444 MS.gene051339:CDS 35.0%
!! TATGATGTTGATGACTGGAA+AGG - chr4.1:19425382-19425401 MS.gene051339:intron 35.0%
!! TTAATAGCTTTGGCATTCAG+AGG + chr4.1:19426686-19426705 None:intergenic 35.0%
!! TTATGGCTATTTTGTGTAGG+TGG - chr4.1:19425126-19425145 MS.gene051339:CDS 35.0%
AAAGGAACAGACACCAATTG+TGG + chr4.1:19427970-19427989 None:intergenic 40.0%
AAGCAACCTTATGGAAACCT+TGG - chr4.1:19426566-19426585 MS.gene051339:intron 40.0%
AAGGTTGACATTGCAAGAGA+AGG - chr4.1:19424827-19424846 MS.gene051339:CDS 40.0%
AATTATTGGAACCTTGTGGG+GGG + chr4.1:19427630-19427649 None:intergenic 40.0%
ACAGGATTGGATTTGAACTG+TGG - chr4.1:19426413-19426432 MS.gene051339:CDS 40.0%
ACCTCAGGATCAAGAACAAA+GGG - chr4.1:19428076-19428095 MS.gene051339:CDS 40.0%
ACCTTCGTAGTTTCCAATCA+TGG + chr4.1:19426750-19426769 None:intergenic 40.0%
ACTGTCTTCTCATTTGGAGA+TGG - chr4.1:19427904-19427923 MS.gene051339:intron 40.0%
AGAAATTGAGTGTGGATGCA+AGG - chr4.1:19424787-19424806 MS.gene051339:CDS 40.0%
ATCACACAGCTCTTAAAAGG+TGG + chr4.1:19425552-19425571 None:intergenic 40.0%
ATGCAGTAAGACGAAGTTGT+TGG - chr4.1:19427390-19427409 MS.gene051339:CDS 40.0%
ATGCGTCTAGGTTTCTTTGA+TGG - chr4.1:19426533-19426552 MS.gene051339:intron 40.0%
ATTCTTGCCATAATGTCTGG+AGG - chr4.1:19427150-19427169 MS.gene051339:intron 40.0%
CAAACATGATCCTCAGCTAA+AGG + chr4.1:19427988-19428007 None:intergenic 40.0%
CATCAACAGCAGAATTCACA+AGG + chr4.1:19424860-19424879 None:intergenic 40.0%
CCATAGCTGATGTCATCTTT+GGG - chr4.1:19427259-19427278 MS.gene051339:intron 40.0%
CGTGGCAAATGGAAACTAAA+TGG - chr4.1:19425663-19425682 MS.gene051339:intron 40.0%
CTGCAACAAGAAATTGAGTG+TGG - chr4.1:19424779-19424798 MS.gene051339:CDS 40.0%
CTGTTGATGTAAGCAGACTT+GGG - chr4.1:19424871-19424890 MS.gene051339:CDS 40.0%
CTTCATGGAGTCTCTAACAT+TGG - chr4.1:19424924-19424943 MS.gene051339:CDS 40.0%
GAAATTGAGTGTGGATGCAA+GGG - chr4.1:19424788-19424807 MS.gene051339:CDS 40.0%
GAATTATTGGAACCTTGTGG+GGG + chr4.1:19427631-19427650 None:intergenic 40.0%
GACATTATGGCAAGAATCAC+AGG + chr4.1:19427147-19427166 None:intergenic 40.0%
GAGAAACCTTACCTTTCCTA+TGG + chr4.1:19425045-19425064 None:intergenic 40.0%
GAGAATAGGCATAGGAAAAC+TGG + chr4.1:19424988-19425007 None:intergenic 40.0%
GATCCTGAGGTGAATATCAA+AGG + chr4.1:19428067-19428086 None:intergenic 40.0%
GATCTTGATCTAATGGCTTC+AGG - chr4.1:19427532-19427551 MS.gene051339:CDS 40.0%
GATTGTGGATACCATGTCAT+GGG + chr4.1:19427790-19427809 None:intergenic 40.0%
GCCATTAGATCAAGATCGAA+CGG + chr4.1:19427529-19427548 None:intergenic 40.0%
GGTCTACAACAAACTGATGA+TGG - chr4.1:19425310-19425329 MS.gene051339:intron 40.0%
GTGATTCTTGCCATAATGTC+TGG - chr4.1:19427147-19427166 MS.gene051339:intron 40.0%
TAGCCTTTGATATTCACCTC+AGG - chr4.1:19428061-19428080 MS.gene051339:CDS 40.0%
TGACAGCACCTTCTGTATAT+CGG + chr4.1:19426451-19426470 None:intergenic 40.0%
TGATTGTGGATACCATGTCA+TGG + chr4.1:19427791-19427810 None:intergenic 40.0%
TGGAGATTCCAACAAGCTTA+AGG - chr4.1:19425330-19425349 MS.gene051339:intron 40.0%
TGTAAGTCGCTTGATGTTGT+TGG - chr4.1:19428021-19428040 MS.gene051339:CDS 40.0%
TTGACATTGCAAGAGAAGGT+TGG - chr4.1:19424831-19424850 MS.gene051339:CDS 40.0%
TTGCTAGCAAATATGCAGCA+GGG - chr4.1:19425278-19425297 MS.gene051339:intron 40.0%
TTTCCATAAGGTTGCTTGCT+AGG + chr4.1:19426563-19426582 None:intergenic 40.0%
TTTCTTGGCCGATATACAGA+AGG - chr4.1:19426440-19426459 MS.gene051339:CDS 40.0%
TTTGCGACATTAATGCGTCT+AGG - chr4.1:19426521-19426540 MS.gene051339:CDS 40.0%
TTTGGACCAAGGTTTCCATA+AGG + chr4.1:19426575-19426594 None:intergenic 40.0%
! AAAGCCAACAAGTGTTTCTG+AGG + chr4.1:19428162-19428181 None:intergenic 40.0%
! AGGTGTTCTGTTTTCAACAG+AGG + chr4.1:19424625-19424644 None:intergenic 40.0%
! GCTTCCTTGTTTCAAACCAT+AGG - chr4.1:19425026-19425045 MS.gene051339:CDS 40.0%
! GTCAGTGAGATTGACTTACT+TGG + chr4.1:19427294-19427313 None:intergenic 40.0%
! TTCGAGAAAGTACACTTGAC+AGG - chr4.1:19428180-19428199 MS.gene051339:CDS 40.0%
! TTTTGTGTAGGTGGTTTCGA+CGG - chr4.1:19425135-19425154 MS.gene051339:CDS 40.0%
!! AATCCAGCATTGGCGAATTA+CGG - chr4.1:19424753-19424772 MS.gene051339:CDS 40.0%
!! ATTTGCACCGACTACAATCA+CGG + chr4.1:19427028-19427047 None:intergenic 40.0%
!! CAGCATATGATGTTGATGAC+TGG - chr4.1:19425377-19425396 MS.gene051339:intron 40.0%
!! CTTCTTAAAGGTGTTATCCG+TGG - chr4.1:19425645-19425664 MS.gene051339:intron 40.0%
!! GGTTGGCTGGTTTAACATAT+TGG - chr4.1:19425182-19425201 MS.gene051339:intron 40.0%
!! GTGTTGCTTAAAAACTGTGC+AGG - chr4.1:19426653-19426672 MS.gene051339:intron 40.0%
!! TTGAGTGTGGTTGATGAACT+TGG - chr4.1:19428249-19428268 MS.gene051339:CDS 40.0%
AATGCTACTAGGGCCATGAT+TGG - chr4.1:19426734-19426753 MS.gene051339:CDS 45.0%
ACCACAACTCAGCAAAAGTG+TGG + chr4.1:19424685-19424704 None:intergenic 45.0%
AGCAAAGCTTGTGGGAACTA+AGG + chr4.1:19426929-19426948 None:intergenic 45.0%
AGCAGCAACCTTAAGCTTGT+TGG + chr4.1:19425341-19425360 None:intergenic 45.0%
AGGCGAAAACTGCAGATGTT+TGG + chr4.1:19424719-19424738 None:intergenic 45.0%
ATAGGAAAACTGGTTGCTCC+AGG + chr4.1:19424978-19424997 None:intergenic 45.0%
ATATGCTCAGTGACCTCACT+AGG - chr4.1:19427705-19427724 MS.gene051339:CDS 45.0%
ATCACAAGCATTCTGTGGGT+TGG - chr4.1:19427210-19427229 MS.gene051339:intron 45.0%
ATCCGGCCTCATGTTCATAT+TGG + chr4.1:19427836-19427855 None:intergenic 45.0%
ATTCGCCAATGCTGGATTCT+TGG + chr4.1:19424751-19424770 None:intergenic 45.0%
CACAGCTCTTAAAAGGTGGT+TGG + chr4.1:19425548-19425567 None:intergenic 45.0%
CACCTCAGGATCAAGAACAA+AGG - chr4.1:19428075-19428094 MS.gene051339:CDS 45.0%
CAGAGGAAAACAGAGACGTT+AGG + chr4.1:19424645-19424664 None:intergenic 45.0%
CCCAAAGATGACATCAGCTA+TGG + chr4.1:19427262-19427281 None:intergenic 45.0%
CGGTGCAAATCTTGCAATAG+AGG - chr4.1:19427038-19427057 MS.gene051339:intron 45.0%
CTGTAATTCTATCCGGGTTG+AGG - chr4.1:19425829-19425848 MS.gene051339:CDS 45.0%
CTTGCTAGCAAATATGCAGC+AGG - chr4.1:19425277-19425296 MS.gene051339:intron 45.0%
GACCAATATGAACATGAGGC+CGG - chr4.1:19427831-19427850 MS.gene051339:intron 45.0%
GATCCTAGCAAGCAACCTTA+TGG - chr4.1:19426557-19426576 MS.gene051339:intron 45.0%
GATGCAACCGTGATTGTAGT+CGG - chr4.1:19427018-19427037 MS.gene051339:intron 45.0%
GCAATGTCAACCTTCTCACA+AGG + chr4.1:19424821-19424840 None:intergenic 45.0%
GCCATAGCTGATGTCATCTT+TGG - chr4.1:19427258-19427277 MS.gene051339:intron 45.0%
GCCATGATTGGAAACTACGA+AGG - chr4.1:19426746-19426765 MS.gene051339:CDS 45.0%
GCCCAATGCTAATGCTACTA+GGG - chr4.1:19426724-19426743 MS.gene051339:CDS 45.0%
GCCCTAGTAGCATTAGCATT+GGG + chr4.1:19426728-19426747 None:intergenic 45.0%
GCCGTTCGATCTTGATCTAA+TGG - chr4.1:19427525-19427544 MS.gene051339:intron 45.0%
GCTGACCCTGATCTTCTTAA+AGG - chr4.1:19425633-19425652 MS.gene051339:intron 45.0%
GCTGCAATGAGAATAGGCAT+AGG + chr4.1:19424996-19425015 None:intergenic 45.0%
GCTGTTGATGTAAGCAGACT+TGG - chr4.1:19424870-19424889 MS.gene051339:CDS 45.0%
GGGGAAACTGTCTTCTCATT+TGG - chr4.1:19427898-19427917 MS.gene051339:intron 45.0%
GGTTGCTCCAGGTATAACAT+TGG + chr4.1:19424967-19424986 None:intergenic 45.0%
TCCCTTTGTTCTTGATCCTG+AGG + chr4.1:19428080-19428099 None:intergenic 45.0%
TGCACCTCAGAAACACTTGT+TGG - chr4.1:19428155-19428174 MS.gene051339:CDS 45.0%
TGTTGCCAAGAATCCAGCAT+TGG - chr4.1:19424743-19424762 MS.gene051339:CDS 45.0%
TTGTGGGAACTAAGGCTGTT+AGG + chr4.1:19426921-19426940 None:intergenic 45.0%
! AAGGTGTTATCCGTGGCAAA+TGG - chr4.1:19425652-19425671 MS.gene051339:intron 45.0%
! GACAGGAAAATCAGAAGCAC+TGG - chr4.1:19428197-19428216 MS.gene051339:CDS 45.0%
! GCATTGGTGCATTGAACATC+AGG + chr4.1:19426961-19426980 None:intergenic 45.0%
! GCTGAAGTGCAGACATCTTT+TGG + chr4.1:19426593-19426612 None:intergenic 45.0%
! TGCAGACATCTTTTGGACCA+AGG + chr4.1:19426586-19426605 None:intergenic 45.0%
! TGCTGAGGCTGCAATCTTTT+TGG + chr4.1:19426998-19427017 None:intergenic 45.0%
!! ATCCAGCATTGGCGAATTAC+GGG - chr4.1:19424754-19424773 MS.gene051339:CDS 45.0%
AACCCGTAATTCGCCAATGC+TGG + chr4.1:19424759-19424778 None:intergenic 50.0%
AAGGCTGTTAGGCCTTGCAA+AGG + chr4.1:19426910-19426929 None:intergenic 50.0%
AATCACGGTTGCATCTGCTG+AGG + chr4.1:19427013-19427032 None:intergenic 50.0%
ACATTACACCAAGACCCCTG+AGG - chr4.1:19426199-19426218 MS.gene051339:CDS 50.0%
ACTAACTGTTGCTGCTGTCC+TGG + chr4.1:19427096-19427115 None:intergenic 50.0%
AGATCAGGGTCAGCACAAGT+CGG + chr4.1:19425627-19425646 None:intergenic 50.0%
CAAGAGCAATGCACAACGTC+GGG - chr4.1:19425161-19425180 MS.gene051339:CDS 50.0%
CATAATGTCTGGAGGAGGCA+TGG - chr4.1:19427158-19427177 MS.gene051339:intron 50.0%
CATGAAAATTGCCCCCCACA+AGG - chr4.1:19427616-19427635 MS.gene051339:CDS 50.0%
CATGCCTCCTCCAGACATTA+TGG + chr4.1:19427160-19427179 None:intergenic 50.0%
CTTGCCATAATGTCTGGAGG+AGG - chr4.1:19427153-19427172 MS.gene051339:intron 50.0%
GCAAGAGCAATGCACAACGT+CGG - chr4.1:19425160-19425179 MS.gene051339:CDS 50.0%
GCAAGTAAAGGGTCTTCTCC+TGG + chr4.1:19425262-19425281 None:intergenic 50.0%
GCAGCCAAGTCTATTCTAGC+AGG - chr4.1:19426227-19426246 MS.gene051339:CDS 50.0%
GCGTTACACCTTCAATGCTG+TGG - chr4.1:19425411-19425430 MS.gene051339:intron 50.0%
GCTGTCAAGCAAGGGCTTAT+AGG - chr4.1:19426464-19426483 MS.gene051339:CDS 50.0%
GGAAGAGGTCAAGAAACACC+AGG - chr4.1:19425241-19425260 MS.gene051339:intron 50.0%
GGAGTCTCTAACATTGGTCC+AGG - chr4.1:19424930-19424949 MS.gene051339:CDS 50.0%
GGCAACAGAAAAGTTGCCCT+AGG - chr4.1:19428270-19428289 MS.gene051339:CDS 50.0%
GGCCCAATGCTAATGCTACT+AGG - chr4.1:19426723-19426742 MS.gene051339:CDS 50.0%
GGCCCTAGTAGCATTAGCAT+TGG + chr4.1:19426729-19426748 None:intergenic 50.0%
GGGTGAAAGACCTTGTGAGA+AGG - chr4.1:19424808-19424827 MS.gene051339:CDS 50.0%
GGTGTCTGTTCCTTTAGCTG+AGG - chr4.1:19427975-19427994 MS.gene051339:CDS 50.0%
TAGAGGCAGAGAGTCATGAC+AGG - chr4.1:19427055-19427074 MS.gene051339:intron 50.0%
TATGCAGCAGGGTACGTGAA+AGG - chr4.1:19425289-19425308 MS.gene051339:intron 50.0%
TCTTGACCTCTTCCCCATCT+TGG + chr4.1:19425235-19425254 None:intergenic 50.0%
TGGATTCTTGGCAACATCGC+AGG + chr4.1:19424739-19424758 None:intergenic 50.0%
TGTCTGCACTTCAGCAAACC+AGG - chr4.1:19426598-19426617 MS.gene051339:intron 50.0%
! GCCACACTTTTGCTGAGTTG+TGG - chr4.1:19424681-19424700 MS.gene051339:CDS 50.0%
! TGGTGGTCTGAAGCACTTCA+TGG - chr4.1:19424909-19424928 MS.gene051339:CDS 50.0%
!! ACAGAAGGTGCTGTCAAGCA+AGG - chr4.1:19426455-19426474 MS.gene051339:CDS 50.0%
!! ATTCTGTGGGTTGGCTATCC+TGG - chr4.1:19427219-19427238 MS.gene051339:intron 50.0%
!! CAGAAGGTGCTGTCAAGCAA+GGG - chr4.1:19426456-19426475 MS.gene051339:CDS 50.0%
ACAGCCAGCAGCAAAGCTTG+TGG + chr4.1:19426938-19426957 None:intergenic 55.0%
ACTTGGCTGCAGCTTCCTCA+GGG + chr4.1:19426217-19426236 None:intergenic 55.0%
AGCAATGCACAACGTCGGGT+TGG - chr4.1:19425165-19425184 MS.gene051339:intron 55.0%
AGCTAGCTCGTGAAGCTGCA+AGG - chr4.1:19426621-19426640 MS.gene051339:intron 55.0%
AGGGATCCAAGATGGGGAAG+AGG - chr4.1:19425226-19425245 MS.gene051339:intron 55.0%
CAGCCAGCAGCAAAGCTTGT+GGG + chr4.1:19426937-19426956 None:intergenic 55.0%
CTCGTGAAGCTGCAAGGCAA+GGG - chr4.1:19426627-19426646 MS.gene051339:intron 55.0%
GGCATCGTCTAGTGCAGCAT+TGG + chr4.1:19426977-19426996 None:intergenic 55.0%
GTGGAAGGCTACCCATGACA+TGG - chr4.1:19427776-19427795 MS.gene051339:CDS 55.0%
GTTCCCACAAGCTTTGCTGC+TGG - chr4.1:19426931-19426950 MS.gene051339:intron 55.0%
GTTGGCTATCCTGGAGAAGC+TGG - chr4.1:19427228-19427247 MS.gene051339:intron 55.0%
TGAGGTGCATTGTGCACTGC+AGG + chr4.1:19428144-19428163 None:intergenic 55.0%
ATGAGGCCGGATCCTGCTAC+AGG - chr4.1:19427844-19427863 MS.gene051339:intron 60.0%
CAGCTTCACGAGCTAGCTCC+TGG + chr4.1:19426619-19426638 None:intergenic 60.0%
CTACCAGGGTAGCCTGTAGC+AGG + chr4.1:19427859-19427878 None:intergenic 60.0%
CTTGGCTGCAGCTTCCTCAG+GGG + chr4.1:19426216-19426235 None:intergenic 60.0%
GACTTGGCTGCAGCTTCCTC+AGG + chr4.1:19426218-19426237 None:intergenic 60.0%
GATCCTGCTACAGGCTACCC+TGG - chr4.1:19427853-19427872 MS.gene051339:intron 60.0%
GCTCGTGAAGCTGCAAGGCA+AGG - chr4.1:19426626-19426645 MS.gene051339:intron 60.0%
GGCTATCCTGGAGAAGCTGG+TGG - chr4.1:19427231-19427250 MS.gene051339:intron 60.0%
GGGTAGCCTGTAGCAGGATC+CGG + chr4.1:19427853-19427872 None:intergenic 60.0%
GGTGCATTGTGCACTGCAGG+AGG + chr4.1:19428141-19428160 None:intergenic 60.0%
TGCAGCTTCCTCAGGGGTCT+TGG + chr4.1:19426210-19426229 None:intergenic 60.0%
!! ATGCACAACGTCGGGTTGGC+TGG - chr4.1:19425169-19425188 MS.gene051339:intron 60.0%
GCAGCTCCACCAGCTTCTCC+AGG + chr4.1:19427240-19427259 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 19424612 19428347 19424612 ID=MS.gene051339
chr4.1 mRNA 19424612 19428347 19424612 ID=MS.gene051339.t1;Parent=MS.gene051339
chr4.1 exon 19427907 19428347 19427907 ID=MS.gene051339.t1.exon1;Parent=MS.gene051339.t1
chr4.1 CDS 19427907 19428347 19427907 ID=cds.MS.gene051339.t1;Parent=MS.gene051339.t1
chr4.1 exon 19427527 19427814 19427527 ID=MS.gene051339.t1.exon2;Parent=MS.gene051339.t1
chr4.1 CDS 19427527 19427814 19427527 ID=cds.MS.gene051339.t1;Parent=MS.gene051339.t1
chr4.1 exon 19427274 19427443 19427274 ID=MS.gene051339.t1.exon3;Parent=MS.gene051339.t1
chr4.1 CDS 19427274 19427443 19427274 ID=cds.MS.gene051339.t1;Parent=MS.gene051339.t1
chr4.1 exon 19426711 19426808 19426711 ID=MS.gene051339.t1.exon4;Parent=MS.gene051339.t1
chr4.1 CDS 19426711 19426808 19426711 ID=cds.MS.gene051339.t1;Parent=MS.gene051339.t1
chr4.1 exon 19426192 19426542 19426192 ID=MS.gene051339.t1.exon5;Parent=MS.gene051339.t1
chr4.1 CDS 19426192 19426542 19426192 ID=cds.MS.gene051339.t1;Parent=MS.gene051339.t1
chr4.1 exon 19425665 19426075 19425665 ID=MS.gene051339.t1.exon6;Parent=MS.gene051339.t1
chr4.1 CDS 19425665 19426075 19425665 ID=cds.MS.gene051339.t1;Parent=MS.gene051339.t1
chr4.1 exon 19424612 19425183 19424612 ID=MS.gene051339.t1.exon7;Parent=MS.gene051339.t1
chr4.1 CDS 19424612 19425183 19424612 ID=cds.MS.gene051339.t1;Parent=MS.gene051339.t1
Gene Sequence

>MS.gene051339

GTCATAATGGCCTCTGTTGAAAACAGAACACCTAACGTCTCTGTTTTCCTCTGTTTCTTTGTTCTGTTTGCCACACTTTTGCTGAGTTGTGGTCGAGTTTCGAGCCAAACATCTGCAGTTTTCGCCTGCGATGTTGCCAAGAATCCAGCATTGGCGAATTACGGGTTCTGCAACAAGAAATTGAGTGTGGATGCAAGGGTGAAAGACCTTGTGAGAAGGTTGACATTGCAAGAGAAGGTTGGTAACCTTGTGAATTCTGCTGTTGATGTAAGCAGACTTGGGATTCCAAAATATGAATGGTGGTCTGAAGCACTTCATGGAGTCTCTAACATTGGTCCAGGAACTCATTTTTCCAATGTTATACCTGGAGCAACCAGTTTTCCTATGCCTATTCTCATTGCAGCTTCTTTCAATGCTTCCTTGTTTCAAACCATAGGAAAGGTAAGGTTTCTCTTATCATATCCTGCATGTTAATGGTGTAAATAACATGTATTTTAAACTTTTAAATATTGTTTTATGGCTATTTTGTGTAGGTGGTTTCGACGGAAGCAAGAGCAATGCACAACGTCGGGTTGGCTGGTTTAACATATTGGTCACCAAACATTAACATATTTAGGGATCCAAGATGGGGAAGAGGTCAAGAAACACCAGGAGAAGACCCTTTACTTGCTAGCAAATATGCAGCAGGGTACGTGAAAGGTCTACAACAAACTGATGATGGAGATTCCAACAAGCTTAAGGTTGCTGCTTGTTGCAAACACTACACAGCATATGATGTTGATGACTGGAAAGGTGTTCAGCGTTACACCTTCAATGCTGTGGTAATGTATCAATATCATTGTTTGAAATGAAAGCTAGTTAATGTGTTTTTGAGGATTGTTTTAATTGCTGTTGATTTTGTTAGGTGACACAACAAGATTTAGATGACACATACCAACCACCTTTTAAGAGCTGTGTGATTGATGGAAATGTTGCTAGTGTTATGTGTTCCTACAATCAAGTAAATGGAAAACCGACTTGTGCTGACCCTGATCTTCTTAAAGGTGTTATCCGTGGCAAATGGAAACTAAATGGGTATCTTTTCATTTTTCAAACCTCTTAATTCTTGTATCTCACTCCATTCAAATATAAACAAAATATATTATCTCATACTTTTTTGAAAACAAGCTATAGAATGCGGCAACTTTAAAACTCTTGAGTGAGAACTTTGTTGTTCACTGTAATTCTATCCGGGTTGAGGAATTAGTTTTTGTAGTTGCGAACAAAGAATACCCAATTTACATCCAAAAAAATTATCTTTTATATGAGAATAAAAAAGATTGTTAGAAAATAAATATATATTAATTAAATGACATTTAGAAATAATATTATTAGATAGAGTGAAATCAAATAAGATTTATTTATATTTTAGACCAGCAAACATGAGTTTATTTTGCTTATATTGAAGATTTGAGAAAAATAATGATGTTTGCCATTCTTTTCTGTTTTCGACTTTTTTACAATAAATATGAATATGTTGTTTATCTATGTGATATGCAGATATATAGTCTCTGATTGTGACTCAGTAGATGTGCTTTTCAAAAATCAACATTACACCAAGACCCCTGAGGAAGCTGCAGCCAAGTCTATTCTAGCAGGTAAACTACATTCGAAAAGATTACACAATCACATATTCATAGGCAACAACAGTTGAATTGTAATTTTATTTAGATGATTCATTTGAAATTTAATCTGTGTAGCTTCTTTAGAATTATACAAGGCAACTATTTATTTATCATTTTTGTGTACAAATTTTGATTTTACAGGATTGGATTTGAACTGTGGAAGTTTTCTTGGCCGATATACAGAAGGTGCTGTCAAGCAAGGGCTTATAGGTGAAGCATCCATTAACAATGCCGTCTACAATAATTTTGCGACATTAATGCGTCTAGGTTTCTTTGATGGCGATCCTAGCAAGCAACCTTATGGAAACCTTGGTCCAAAAGATGTCTGCACTTCAGCAAACCAGGAGCTAGCTCGTGAAGCTGCAAGGCAAGGGATTGTGTTGCTTAAAAACTGTGCAGGATCATTGCCTCTGAATGCCAAAGCTATTAAATCATTGGCAGTTATTGGGCCCAATGCTAATGCTACTAGGGCCATGATTGGAAACTACGAAGGTATCAAATTTTCCCACTCCTATAACTTTTATAGGAAAAATGTATGATATAGTTTGTTTTTGAAGTTGAATTGACATAATATTTAAGAAATACTAACAAGTTCTAAAACTTTGCAGGCATTCCATGCAAATATACATCACCTTTGCAAGGCCTAACAGCCTTAGTTCCCACAAGCTTTGCTGCTGGCTGTCCTGATGTTCAATGCACCAATGCTGCACTAGACGATGCCAAAAAGATTGCAGCCTCAGCAGATGCAACCGTGATTGTAGTCGGTGCAAATCTTGCAATAGAGGCAGAGAGTCATGACAGGATTAACATACTTCTTCCAGGACAGCAGCAACAGTTAGTTACAGAAGTTGCAAATGTAGCTAAGGGTCCTGTGATTCTTGCCATAATGTCTGGAGGAGGCATGGATGTTTCCTTTGCTAAAACTAATAAAAAGATCACAAGCATTCTGTGGGTTGGCTATCCTGGAGAAGCTGGTGGAGCTGCCATAGCTGATGTCATCTTTGGGTATCATAATCCAAGTAAGTCAATCTCACTGACATTCTTTCCTCATATTACAGAATTATCATTCCAATAACTTGGATTTCCTTTTGTCACAATTTTCAAGCACTCACGCATGCAGTAAGACGAAGTTGTTGGATCAAACAACTTTGATTTTAAACTCGGTATATCAGCTTCAAAAACAAACATGAAATTATAGTCGTTCAATCTTGATCTAATGGCTCCAAGTTGCTACAAACTTGAAATTGTAGCCGTTCGATCTTGATCTAATGGCTTCAGGTTGCTAAATGCATGAATGTGTGGAAATTGTGACGGCTTACAACCTAAATAATGGTTTCGCTCATGAAAATTGCCCCCCACAAGGTTCCAATAATTCTCAATAATATATGTTTATATATTAGCTGCATTAGCATATACACTTGTATATATTATATGCTCAGTGACCTCACTAGGATCTAATTATATGGGTATGGTCTGCACAACTTAATTTTTTTTATTCAGGTGGAAGGCTACCCATGACATGGTATCCACAATCATATGTAGACAAAGTACCAATGACCAATATGAACATGAGGCCGGATCCTGCTACAGGCTACCCTGGTAGAACATACAGATTTTATAAAGGGGAAACTGTCTTCTCATTTGGAGATGGAATAAGCTACTCAACTTTCGAGCATAAATTGGTTAAAGCACCACAATTGGTGTCTGTTCCTTTAGCTGAGGATCATGTTTGTCGTTCCTCAAAATGTAAGTCGCTTGATGTTGTTGGCGAACATTGTCAAAACTTAGCCTTTGATATTCACCTCAGGATCAAGAACAAAGGGAAAATGAGCAGTAGCCAAACAGTGTTTTTGTTCTCTACTCCTCCTGCAGTGCACAATGCACCTCAGAAACACTTGTTGGCTTTCGAGAAAGTACACTTGACAGGAAAATCAGAAGCACTGGTCAGTTTCAAAGTAGATGTTTGTAATGATTTGAGTGTGGTTGATGAACTTGGCAACAGAAAAGTTGCCCTAGGAAAACATATGCTTCATGTAGGAGACTTGAAGCATCCTTTGAGCGTGATGATTTAA

Protein sequence

>MS.gene051339.t1

VIMASVENRTPNVSVFLCFFVLFATLLLSCGRVSSQTSAVFACDVAKNPALANYGFCNKKLSVDARVKDLVRRLTLQEKVGNLVNSAVDVSRLGIPKYEWWSEALHGVSNIGPGTHFSNVIPGATSFPMPILIAASFNASLFQTIGKVVSTEARAMHNVGLAGLTYWSPNINIFRDPRWGRGQETPGEDPLLASKYAAGYVKGLQQTDDGDSNKLKVAACCKHYTAYDVDDWKGVQRYTFNAVVTQQDLDDTYQPPFKSCVIDGNVASVMCSYNQVNGKPTCADPDLLKGVIRGKWKLNGYIVSDCDSVDVLFKNQHYTKTPEEAAAKSILAGLDLNCGSFLGRYTEGAVKQGLIGEASINNAVYNNFATLMRLGFFDGDPSKQPYGNLGPKDVCTSANQELAREAARQGIVLLKNCAGSLPLNAKAIKSLAVIGPNANATRAMIGNYEGIPCKYTSPLQGLTALVPTSFAAGCPDVQCTNAALDDAKKIAASADATVIVVGANLAIEAESHDRINILLPGQQQQLVTEVANVAKGPVILAIMSGGGMDVSFAKTNKKITSILWVGYPGEAGGAAIADVIFGYHNPSGRLPMTWYPQSYVDKVPMTNMNMRPDPATGYPGRTYRFYKGETVFSFGDGISYSTFEHKLVKAPQLVSVPLAEDHVCRSSKCKSLDVVGEHCQNLAFDIHLRIKNKGKMSSSQTVFLFSTPPAVHNAPQKHLLAFEKVHLTGKSEALVSFKVDVCNDLSVVDELGNRKVALGKHMLHVGDLKHPLSVMI