AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene91308

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91308.t1 MTR_1g106860 97.439 781 20 0 1 781 1 781 0.0 1577
MS.gene91308.t1 MTR_2g008240 55.906 762 317 8 5 759 16 765 0.0 867
MS.gene91308.t1 MTR_4g094285 54.818 768 317 9 6 759 13 764 0.0 854
MS.gene91308.t1 MTR_1g087240 54.090 758 335 6 3 759 2 747 0.0 842
MS.gene91308.t1 MTR_7g109390 53.668 736 329 6 25 759 29 753 0.0 823
MS.gene91308.t1 MTR_2g034720 53.197 735 328 5 25 759 28 746 0.0 808
MS.gene91308.t1 MTR_5g062430 48.928 793 370 15 4 774 3 782 0.0 765
MS.gene91308.t1 MTR_5g062320 49.605 760 361 13 24 774 34 780 0.0 757
MS.gene91308.t1 MTR_3g074060 49.933 749 348 11 25 759 31 766 0.0 753
MS.gene91308.t1 MTR_5g062370 48.469 784 378 15 5 776 15 784 0.0 751
MS.gene91308.t1 MTR_5g030860 48.793 787 370 11 8 774 9 782 0.0 751
MS.gene91308.t1 MTR_5g062650 47.995 798 373 16 4 774 3 785 0.0 740
MS.gene91308.t1 MTR_5g062370 52.677 579 258 10 5 573 15 587 0.0 621
MS.gene91308.t1 MTR_6g028120 26.119 670 349 29 32 625 3 602 2.07e-36 146
MS.gene91308.t1 MTR_7g086030 26.923 624 338 27 38 591 4 579 6.77e-35 141
MS.gene91308.t1 MTR_7g086030 26.923 624 338 27 38 591 29 604 1.06e-34 141
MS.gene91308.t1 MTR_6g028090 26.929 661 325 31 47 625 37 621 3.97e-34 139
MS.gene91308.t1 MTR_6g028100 25.775 613 341 25 47 591 37 603 2.89e-32 133
MS.gene91308.t1 MTR_3g079750 25.629 636 363 29 48 625 38 621 6.98e-32 132
MS.gene91308.t1 MTR_6g028110 25.122 617 340 25 47 591 38 604 1.80e-31 131
MS.gene91308.t1 MTR_6g028110 24.451 638 360 25 26 591 17 604 2.72e-31 130
MS.gene91308.t1 MTR_2g030000 25.608 617 335 27 48 591 40 605 3.76e-29 124
MS.gene91308.t1 MTR_5g069800 25.735 544 314 23 73 581 85 573 7.71e-27 116
MS.gene91308.t1 MTR_3g462820 25.077 650 345 26 11 581 3 589 1.05e-26 116
MS.gene91308.t1 MTR_5g069740 25.508 541 307 24 73 581 85 561 4.12e-25 111
MS.gene91308.t1 MTR_7g086010 28.338 367 215 17 73 423 118 452 1.19e-23 105
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91308.t1 AT3G19620 70.526 760 209 8 21 774 23 773 0.0 1114
MS.gene91308.t1 AT5G64570 55.556 783 316 12 4 774 22 784 0.0 865
MS.gene91308.t1 AT5G09730 53.224 791 331 16 2 774 4 773 0.0 831
MS.gene91308.t1 AT1G02640 52.987 770 334 8 3 763 4 754 0.0 825
MS.gene91308.t1 AT5G49360 53.264 766 338 10 1 759 10 762 0.0 811
MS.gene91308.t1 AT5G10560 48.745 757 351 9 31 759 35 782 0.0 741
MS.gene91308.t1 AT1G78060 48.079 755 378 9 14 761 12 759 0.0 730
MS.gene91308.t1 AT5G64570 61.274 581 211 8 4 578 22 594 0.0 724
MS.gene91308.t1 AT5G64570 55.263 646 260 10 138 774 1 626 0.0 713
MS.gene91308.t1 AT5G09700 47.686 497 237 7 286 774 45 526 1.95e-156 466
MS.gene91308.t1 AT3G47040 25.571 657 364 30 38 628 10 607 7.90e-32 132
MS.gene91308.t1 AT3G47000 25.496 655 361 27 38 625 10 604 1.18e-31 131
MS.gene91308.t1 AT3G47010 25.801 624 371 25 32 599 5 592 1.20e-31 131
MS.gene91308.t1 AT3G62710 26.873 614 349 31 45 624 101 648 2.22e-31 131
MS.gene91308.t1 AT5G20950 25.309 648 357 28 48 629 36 622 1.22e-30 128
MS.gene91308.t1 AT5G20950 25.309 648 357 28 48 629 36 622 1.22e-30 128
MS.gene91308.t1 AT5G20950 25.466 644 353 28 48 625 114 696 1.91e-30 128
MS.gene91308.t1 AT3G47010 24.960 621 379 23 32 599 5 591 1.28e-29 125
MS.gene91308.t1 AT3G47050 25.980 612 364 24 35 591 7 584 2.35e-29 124
MS.gene91308.t1 AT5G04885 26.316 551 323 24 72 592 125 622 6.46e-29 123
MS.gene91308.t1 AT5G04885 26.316 551 323 24 72 592 108 605 6.51e-29 123
MS.gene91308.t1 AT5G04885 26.316 551 323 24 72 592 108 605 6.51e-29 123
MS.gene91308.t1 AT3G47040 25.037 683 360 32 38 628 10 632 1.76e-28 122
MS.gene91308.t1 AT3G47000 28.000 450 226 18 38 423 10 425 1.98e-27 116
MS.gene91308.t1 AT3G47040 27.169 438 245 18 38 423 10 425 3.06e-26 113
MS.gene91308.t1 AT5G20940 26.667 555 310 27 73 591 111 604 2.32e-25 112
MS.gene91308.t1 AT3G47010 27.540 443 249 18 32 423 5 426 9.36e-25 108
MS.gene91308.t1 AT3G47010 25.060 415 270 16 199 599 26 413 9.49e-20 93.2
MS.gene91308.t1 AT3G47050 26.133 375 219 14 35 365 7 367 1.18e-17 86.3
MS.gene91308.t1 AT3G47000 24.516 465 287 21 183 625 5 427 3.84e-17 85.1

Find 165 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTGGCTGGTTTGACATTT+TGG 0.130488 1.3:-72984551 MS.gene91308:CDS
GCAACATAGGAGGGATATTA+TGG 0.220056 1.3:-72982626 MS.gene91308:CDS
TGAAACATTATGGTACAAAA+TGG 0.221947 1.3:-72984616 MS.gene91308:CDS
CTGCTTATGATGTTGATAAT+TGG 0.227264 1.3:-72984347 MS.gene91308:CDS
AGGGAAATTTCTACTGATAT+TGG 0.228239 1.3:+72981888 None:intergenic
GGGAAATCCCTCTATGAATT+TGG 0.249033 1.3:-72981841 MS.gene91308:CDS
GTGTCATGTGCTCATATAAT+AGG 0.254476 1.3:-72984046 MS.gene91308:CDS
GATTGTGGATACCATGTAAA+TGG 0.264876 1.3:+72981952 None:intergenic
GCCATAGCACAAGTAATATT+TGG 0.265418 1.3:-72982573 MS.gene91308:CDS
TCCAACACACAGCTCTTAAA+TGG 0.278527 1.3:+72984083 None:intergenic
TTATTACCTTAGCATCAAAA+TGG 0.295146 1.3:+72984307 None:intergenic
CAAAGAAGCCAAGTCTCATT+AGG 0.298010 1.3:+72983189 None:intergenic
TGTCAAATTCAAACAACTTA+TGG 0.308883 1.3:+72981684 None:intergenic
AATCCTATCAATTGTTTCAA+TGG 0.312892 1.3:+72981559 None:intergenic
TAAAACCTGTATGTTCTTCC+AGG 0.325928 1.3:+72981868 None:intergenic
GCCCTTCTGCTTCTATAGAT+TGG 0.325933 1.3:+72982784 None:intergenic
GATAGTGAAGTGTTGCAAAA+TGG 0.335511 1.3:+72984867 None:intergenic
AGCCTTGAAATGCCGGTAGA+AGG 0.350533 1.3:+72984774 None:intergenic
GATTGGACAGCACACTATTC+TGG 0.361517 1.3:-72981431 MS.gene91308:CDS
AGAGGCCAGTGGGGTCTAGA+TGG 0.363411 1.3:-72983972 MS.gene91308:CDS
GTTCCATTGAAACAATTGAT+AGG 0.364046 1.3:-72981562 MS.gene91308:CDS
CACCACATTGATATTACAAT+TGG 0.364152 1.3:-72981379 MS.gene91308:CDS
GCAAGAGCCACTGCATCTTC+AGG 0.368484 1.3:+72983445 None:intergenic
GACTAAAATCAATGTTCCTT+TGG 0.370514 1.3:+72982695 None:intergenic
AGCTATGTACAATGTGGATT+TGG 0.386393 1.3:-72984568 MS.gene91308:CDS
TTCTGGATCATTATAGTAGA+AGG 0.386843 1.3:+72981772 None:intergenic
AGAGTTAACTTGACATTGCC+TGG 0.387425 1.3:-72982756 MS.gene91308:CDS
CCACTCACCACTTCTGAACT+TGG 0.388607 1.3:+72981586 None:intergenic
TTAGTGAAAGAAGTATCAAT+TGG 0.395134 1.3:+72982657 None:intergenic
TTTGCAAATGGAAGTGACTT+TGG 0.397416 1.3:+72983161 None:intergenic
TTGCAAATGGAAGTGACTTT+GGG 0.402569 1.3:+72983162 None:intergenic
TGCTAAAGATGATAGACTTA+AGG 0.403929 1.3:-72984394 MS.gene91308:CDS
AACTCCAGGGGAAGATCCTT+TGG 0.404077 1.3:-72984478 MS.gene91308:CDS
GATACAGTGGTGTTGGTTGT+TGG 0.412529 1.3:-72982813 MS.gene91308:CDS
ACTGTGGTGGCATTTGCATT+TGG 0.412568 1.3:+72982996 None:intergenic
CTCATGTTCATGTCTGTCAT+TGG 0.420175 1.3:+72981913 None:intergenic
AAAGAGCACAAGTTAAGGTT+GGG 0.420572 1.3:-72981534 MS.gene91308:CDS
ACAAGCTTCTCTTGAAATCC+AGG 0.424917 1.3:+72982738 None:intergenic
TCTACCGGCATTTCAAGGCT+TGG 0.426574 1.3:-72984771 MS.gene91308:CDS
ACCCTTCTACCGGCATTTCA+AGG 0.433066 1.3:-72984776 MS.gene91308:CDS
AGTGGTGTTGGTTGTTGGAT+TGG 0.437442 1.3:-72982808 MS.gene91308:CDS
ACTTCTGTAGTCCTTGTAAA+GGG 0.438650 1.3:+72982931 None:intergenic
TACTTCTGTAGTCCTTGTAA+AGG 0.441252 1.3:+72982930 None:intergenic
CACTAAAGAAAATCAGCAAT+TGG 0.455452 1.3:-72983117 MS.gene91308:CDS
ATTTGAAAGAGCACAAGTTA+AGG 0.457325 1.3:-72981539 MS.gene91308:CDS
TGCTCATATAATAGGGTGAA+TGG 0.462881 1.3:-72984038 MS.gene91308:CDS
TTGGTGTTCCTGCTTATGAA+TGG 0.463212 1.3:-72984752 MS.gene91308:CDS
ATTACACCTTGGAGAAGGTC+TGG 0.463689 1.3:+72983996 None:intergenic
GAAACATTATGGTACAAAAT+GGG 0.466706 1.3:-72984615 MS.gene91308:CDS
GAAAGAGCACAAGTTAAGGT+TGG 0.467163 1.3:-72981535 MS.gene91308:CDS
ATCTATAGAAGCAGAAGGGC+TGG 0.468944 1.3:-72982781 MS.gene91308:CDS
TGTCATGTGCTCATATAATA+GGG 0.473992 1.3:-72984045 MS.gene91308:CDS
TCCCTCTATGAATTTGGCTA+TGG 0.484680 1.3:-72981835 MS.gene91308:CDS
CTCTGCTGATACAGTGGTGT+TGG 0.484940 1.3:-72982820 MS.gene91308:CDS
ATTTAAGAGCTGTGTGTTGG+AGG 0.484967 1.3:-72984081 MS.gene91308:CDS
ACTAAAAGTGTAAGCAACAT+AGG 0.484978 1.3:-72982639 MS.gene91308:CDS
TGACACTAAGTCCTTGGCTC+TGG 0.485207 1.3:+72984836 None:intergenic
TCACTTCCATTTGCAAACCT+TGG 0.486006 1.3:-72983155 MS.gene91308:CDS
ATTTCCCTGGAAGAACATAC+AGG 0.486697 1.3:-72981873 MS.gene91308:CDS
CTGCTGTCGAAACGCGTCCC+TGG 0.488388 1.3:+72984693 None:intergenic
AACACCAAGCCTTGAAATGC+CGG 0.491966 1.3:+72984767 None:intergenic
TATGCTGTAAATTATGTTCG+TGG 0.495123 1.3:-72984444 MS.gene91308:CDS
CAACATAGGAGGGATATTAT+GGG 0.496768 1.3:-72982625 MS.gene91308:CDS
ATTGTGGATACCATGTAAAT+GGG 0.498218 1.3:+72981953 None:intergenic
TAGTGAAAGAAGTATCAATT+GGG 0.498444 1.3:+72982658 None:intergenic
CAGGGACGCGTTTCGACAGC+AGG 0.500208 1.3:-72984692 MS.gene91308:CDS
ATATTTGGTGACTATAACCC+AGG 0.500832 1.3:-72982558 MS.gene91308:intron
CGATATTCAAGCCCTTTACA+AGG 0.501394 1.3:-72982942 MS.gene91308:CDS
TCCATTTAAGAGCTGTGTGT+TGG 0.505176 1.3:-72984084 MS.gene91308:CDS
CGTTTCGACAGCAGGGTACC+AGG 0.507269 1.3:-72984684 MS.gene91308:CDS
ATGTACAATGTGGATTTGGC+TGG 0.507340 1.3:-72984564 MS.gene91308:CDS
ACCAAATATTACTTGTGCTA+TGG 0.508709 1.3:+72982572 None:intergenic
GATGGTCCAAGGTTTGCAAA+TGG 0.509359 1.3:+72983149 None:intergenic
GCCTTGAAATGCCGGTAGAA+GGG 0.510160 1.3:+72984775 None:intergenic
ATATTATGGGTAGGTTATCC+TGG 0.512772 1.3:-72982612 MS.gene91308:CDS
CTTGTAAAGGGCTTGAATAT+CGG 0.513958 1.3:+72982943 None:intergenic
GCAGGTGACAAAGCAAGACT+TGG 0.520570 1.3:-72984123 MS.gene91308:intron
TCTTTAGTGCATACATCAGA+TGG 0.520982 1.3:+72983131 None:intergenic
TGGTGGTCAGAGGCACTTCA+TGG 0.521560 1.3:-72984732 MS.gene91308:CDS
GGTGACAAAGCAAGACTTGG+AGG 0.523632 1.3:-72984120 MS.gene91308:CDS
TCAAGGAAGATATTATTAAG+TGG 0.524739 1.3:+72981730 None:intergenic
TATCAATTGCTTGATCATCA+AGG 0.526561 1.3:+72981713 None:intergenic
GGTAAACGAAAGTTGGTGAT+TGG 0.526693 1.3:-72981448 MS.gene91308:CDS
GTGGCTCTTGCACTGAAAGC+AGG 0.529634 1.3:-72983433 MS.gene91308:intron
CTTCATGGTGTCTCAAATGT+AGG 0.539417 1.3:-72984717 MS.gene91308:CDS
AATATCAGTAGAAATTTCCC+TGG 0.539925 1.3:-72981886 MS.gene91308:CDS
GGGCGTGGACAAGAAACTCC+AGG 0.541036 1.3:-72984492 MS.gene91308:CDS
TTTAAGAGCTGTGTGTTGGA+GGG 0.541333 1.3:-72984080 MS.gene91308:CDS
GTTCGTGGACTACAAGAAGT+TGG 0.541602 1.3:-72984429 MS.gene91308:CDS
GGCAGCCTCTGCTGATACAG+TGG 0.544457 1.3:-72982826 MS.gene91308:CDS
AGAAGGAGCAGATGCTATGT+GGG 0.551576 1.3:+72981789 None:intergenic
ACCACATGAGATCCATCAAA+AGG 0.551827 1.3:+72981628 None:intergenic
ATAATTGGAAAGGCGTTGAT+CGG 0.552315 1.3:-72984332 MS.gene91308:CDS
GGACAGCACACTATTCTGGT+TGG 0.552636 1.3:-72981427 MS.gene91308:CDS
ATCCATAGCCAAATTCATAG+AGG 0.557580 1.3:+72981833 None:intergenic
TAAGCGTGACACTAAGTCCT+TGG 0.559465 1.3:+72984830 None:intergenic
GTTATGATTAGTAACTATGC+TGG 0.561465 1.3:-72982975 MS.gene91308:CDS
CTCTGATTACACCTTGGAGA+AGG 0.562519 1.3:+72983991 None:intergenic
ATCTATTGTAGACCAAGCCT+TGG 0.563804 1.3:-72983228 MS.gene91308:CDS
GAGGCCAGTGGGGTCTAGAT+GGG 0.564760 1.3:-72983971 MS.gene91308:intron
GCAGCTGATAGTATCACTGC+TGG 0.566392 1.3:+72984648 None:intergenic
AAAACCTGTATGTTCTTCCA+GGG 0.569628 1.3:+72981869 None:intergenic
CTCACCACTTCTGAACTTGG+TGG 0.569744 1.3:+72981589 None:intergenic
TCTGACCACCATTCATAAGC+AGG 0.570631 1.3:+72984744 None:intergenic
TGTTTCAGACTGTGATTCAG+TGG 0.570986 1.3:-72983503 MS.gene91308:CDS
GCTCTAGAAGCTGCGAAGCA+AGG 0.571329 1.3:-72983095 MS.gene91308:CDS
GGTGTCTCAAATGTAGGACC+AGG 0.572126 1.3:-72984711 MS.gene91308:CDS
GTGTTCCTGCTTATGAATGG+TGG 0.572399 1.3:-72984749 MS.gene91308:CDS
TGCATACATCAGATGGTCCA+AGG 0.572554 1.3:+72983138 None:intergenic
AAAAGTGTAAGCAACATAGG+AGG 0.573233 1.3:-72982636 MS.gene91308:CDS
AGGTGTAATCAGAGGCCAGT+GGG 0.573573 1.3:-72983982 MS.gene91308:CDS
GTAGGTTATCCTGGTCAAGA+TGG 0.574821 1.3:-72982603 MS.gene91308:CDS
TACATAGTCCTAATGAGACT+TGG 0.576502 1.3:-72983197 MS.gene91308:CDS
TAGAAGGAGCAGATGCTATG+TGG 0.577310 1.3:+72981788 None:intergenic
TCCATAGCCAAATTCATAGA+GGG 0.577492 1.3:+72981834 None:intergenic
TAGTGATGGTAAACGAAAGT+TGG 0.578355 1.3:-72981455 MS.gene91308:CDS
GGAGCCACCAAGTTCAGAAG+TGG 0.580834 1.3:-72981593 MS.gene91308:CDS
CAAATTCAAACAACTTATGG+TGG 0.582768 1.3:+72981687 None:intergenic
TGTAGTTGTATACCAAGGCT+TGG 0.586966 1.3:+72983216 None:intergenic
GCATTTCCTCCATCTTGACC+AGG 0.588584 1.3:+72982594 None:intergenic
GTGGTAGGTCCCCATTTACA+TGG 0.594929 1.3:-72981963 MS.gene91308:CDS
CAACTAGTAAACCCTTCTAC+CGG 0.596049 1.3:-72984786 MS.gene91308:CDS
ACAACCAAAGGATCTTCCCC+TGG 0.596108 1.3:+72984474 None:intergenic
GGCGTGGACAAGAAACTCCA+GGG 0.596923 1.3:-72984491 MS.gene91308:CDS
GACCAATCTATAGAAGCAGA+AGG 0.600841 1.3:-72982786 MS.gene91308:CDS
TGCTATGTGGGTAGAGAATG+TGG 0.601022 1.3:+72981801 None:intergenic
CTAAGTAATGTTGATAGTGA+TGG 0.602583 1.3:-72981469 MS.gene91308:CDS
TGCTTATGAATGGTGGTCAG+AGG 0.605760 1.3:-72984742 MS.gene91308:CDS
ATCTTATGAAACCAGAGCCA+AGG 0.606136 1.3:-72984847 MS.gene91308:CDS
TCTTCAGTAACTTACGCGCA+TGG 0.611081 1.3:-72982903 MS.gene91308:CDS
AAAGTGTAAGCAACATAGGA+GGG 0.615065 1.3:-72982635 MS.gene91308:CDS
TATGATGTTGATAATTGGAA+AGG 0.616039 1.3:-72984342 MS.gene91308:CDS
AGGTCTGGATCAGCACATGT+AGG 0.621412 1.3:+72984011 None:intergenic
AAAGACTCCTGAAGATGCAG+TGG 0.622680 1.3:-72983452 MS.gene91308:CDS
GTGATTGGTGTGAAGAACAA+TGG 0.624345 1.3:-72981652 MS.gene91308:CDS
GATGTGGCTGCTGCTACCAA+AGG 0.627255 1.3:-72982711 MS.gene91308:CDS
GGTTATCCTGGTCAAGATGG+AGG 0.630089 1.3:-72982600 MS.gene91308:CDS
GTTACTAATCATAACTGTGG+TGG 0.637990 1.3:+72982983 None:intergenic
ACTGGCCTCTGATTACACCT+TGG 0.640961 1.3:+72983985 None:intergenic
CATTGATATTACAATTGGAG+AGG 0.641938 1.3:-72981374 MS.gene91308:CDS
CTTCTCCAAGGTGTAATCAG+AGG 0.642134 1.3:-72983990 MS.gene91308:CDS
GTTCTGCTTGAAAACAACAA+AGG 0.647276 1.3:-72983068 MS.gene91308:CDS
CAAACCCATCTAGACCCCAC+TGG 0.647961 1.3:+72983967 None:intergenic
GCTGGAAAGCTAGTAGCACC+TGG 0.652192 1.3:+72984666 None:intergenic
ACTTGATCGACATATGATTG+TGG 0.652204 1.3:+72981937 None:intergenic
GACTATGTAGTTGTATACCA+AGG 0.652901 1.3:+72983211 None:intergenic
AACACACAGCTCTTAAATGG+AGG 0.654259 1.3:+72984086 None:intergenic
GCTGATCCAGACCTTCTCCA+AGG 0.658385 1.3:-72984002 MS.gene91308:CDS
ATAGGAGGGATATTATGGGT+AGG 0.660257 1.3:-72982621 MS.gene91308:CDS
ACCAATCTATAGAAGCAGAA+GGG 0.660435 1.3:-72982785 MS.gene91308:CDS
CCAAGTTCAGAAGTGGTGAG+TGG 0.668174 1.3:-72981586 MS.gene91308:CDS
AGCTAGAGCTATGTACAATG+TGG 0.670531 1.3:-72984574 MS.gene91308:CDS
CTCCAATTGTAATATCAATG+TGG 0.675550 1.3:+72981377 None:intergenic
CAACACCACTGTATCAGCAG+AGG 0.676614 1.3:+72982821 None:intergenic
AAAGGGCTTGAATATCGGCA+TGG 0.678069 1.3:+72982948 None:intergenic
ATAGTTACTAATCATAACTG+TGG 0.682010 1.3:+72982980 None:intergenic
AAGGTGTAATCAGAGGCCAG+TGG 0.694576 1.3:-72983983 MS.gene91308:CDS
GCATATCTAGAAACAACCAA+AGG 0.695865 1.3:+72984462 None:intergenic
GCGTGGACAAGAAACTCCAG+GGG 0.698903 1.3:-72984490 MS.gene91308:CDS
GTGTCTCAAATGTAGGACCA+GGG 0.699223 1.3:-72984710 MS.gene91308:CDS
AGGGACGCGTTTCGACAGCA+GGG 0.700672 1.3:-72984691 MS.gene91308:CDS
AGAGAAGCTTGTGAAAGATG+TGG 0.705643 1.3:-72982727 MS.gene91308:CDS
GGTGTAATCAGAGGCCAGTG+GGG 0.715668 1.3:-72983981 MS.gene91308:CDS
TTGTGGATACCATGTAAATG+GGG 0.746412 1.3:+72981954 None:intergenic
GCAGGTTTAAACATGAACTG+CGG 0.750864 1.3:-72983305 MS.gene91308:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAACTAAGATAAAAACTT+TGG - chr1.3:72983302-72983321 MS.gene91308:CDS 15.0%
!! AAAATAAAAGTTTATGTGTT+TGG + chr1.3:72984269-72984288 None:intergenic 15.0%
!! AAATATGTAAAGATAAATGT+AGG + chr1.3:72983828-72983847 None:intergenic 15.0%
!!! AAAAAAAGTATAAGATATCA+GGG + chr1.3:72982797-72982816 None:intergenic 15.0%
!!! ACAGTGAAAATTTTATTTAT+AGG - chr1.3:72984347-72984366 MS.gene91308:CDS 15.0%
!!! GCTATTATAAATTGATAATT+AGG + chr1.3:72984050-72984069 None:intergenic 15.0%
!!! TTTATCTTAGTTTTTGATAA+AGG + chr1.3:72983297-72983316 None:intergenic 15.0%
!! AAAAAATCAAATGATTGCTT+AGG + chr1.3:72982399-72982418 None:intergenic 20.0%
!! AAAAATCAAATGATTGCTTA+GGG + chr1.3:72982398-72982417 None:intergenic 20.0%
!! GTAAAAATATTTAACTCGTT+CGG + chr1.3:72982141-72982160 None:intergenic 20.0%
!! TATTGGATTATTAAATGGTA+TGG - chr1.3:72982991-72983010 MS.gene91308:CDS 20.0%
!! TCAACTAAATCCTATATTTA+GGG + chr1.3:72982509-72982528 None:intergenic 20.0%
!! TCTATCATAGTATTTATTAC+AGG - chr1.3:72982623-72982642 MS.gene91308:CDS 20.0%
!! TTGACTAAATTACTAGAATT+TGG - chr1.3:72982525-72982544 MS.gene91308:intron 20.0%
!! TTGATTCATAAAAATCAGTT+TGG - chr1.3:72984083-72984102 MS.gene91308:CDS 20.0%
!!! AAATTTTATTTATAGGTGGT+AGG - chr1.3:72984354-72984373 MS.gene91308:CDS 20.0%
!!! AACATTGATTTTAGTCATAA+TGG - chr1.3:72983644-72983663 MS.gene91308:intron 20.0%
!!! AATGTTTTTTTTACTGTCAT+AGG + chr1.3:72983856-72983875 None:intergenic 20.0%
!!! AATTAGTAGTATTGTTTTAC+AGG - chr1.3:72982580-72982599 MS.gene91308:CDS 20.0%
!!! ATTATTAAGTGGTTTTGAAA+TGG + chr1.3:72984594-72984613 None:intergenic 20.0%
!!! CAAAAAAAGTATAAGATATC+AGG + chr1.3:72982798-72982817 None:intergenic 20.0%
!!! CTAGTTTTAATGAAACATTA+TGG - chr1.3:72981706-72981725 MS.gene91308:CDS 20.0%
!!! GTGAAAATTTTATTTATAGG+TGG - chr1.3:72984350-72984369 MS.gene91308:CDS 20.0%
! AATAAAGTTATGACTGGTAT+TGG - chr1.3:72982974-72982993 MS.gene91308:CDS 25.0%
! AATCCTATCAATTGTTTCAA+TGG + chr1.3:72984776-72984795 None:intergenic 25.0%
! ACTGCAAAAAAAATTCTGAT+TGG - chr1.3:72982946-72982965 MS.gene91308:CDS 25.0%
! ATAGTTACTAATCATAACTG+TGG + chr1.3:72983355-72983374 None:intergenic 25.0%
! ATTACTAGAATTTGGAAAGT+TGG - chr1.3:72982533-72982552 MS.gene91308:intron 25.0%
! CTGCAAAAAAAATTCTGATT+GGG - chr1.3:72982947-72982966 MS.gene91308:CDS 25.0%
! GAAACATTATGGTACAAAAT+GGG - chr1.3:72981717-72981736 MS.gene91308:CDS 25.0%
! GTCAACTAAATCCTATATTT+AGG + chr1.3:72982510-72982529 None:intergenic 25.0%
! TAGTTTATCATAGCTATCAT+AGG + chr1.3:72982472-72982491 None:intergenic 25.0%
! TATCACCATGTAGATATTTA+CGG - chr1.3:72982178-72982197 MS.gene91308:intron 25.0%
! TCAAGGAAGATATTATTAAG+TGG + chr1.3:72984605-72984624 None:intergenic 25.0%
! TGAAACATTATGGTACAAAA+TGG - chr1.3:72981716-72981735 MS.gene91308:CDS 25.0%
! TGTCAAATTCAAACAACTTA+TGG + chr1.3:72984651-72984670 None:intergenic 25.0%
! TTATGTGTTTGGTATAAACT+TGG + chr1.3:72984258-72984277 None:intergenic 25.0%
! TTATTACCTTAGCATCAAAA+TGG + chr1.3:72982028-72982047 None:intergenic 25.0%
! TTTAATAGAAAGCTATACCT+GGG + chr1.3:72983794-72983813 None:intergenic 25.0%
! TTTATTACAGGTTGTAGAAA+AGG - chr1.3:72982635-72982654 MS.gene91308:CDS 25.0%
!! ACTGGTATTGGATTATTAAA+TGG - chr1.3:72982986-72983005 MS.gene91308:CDS 25.0%
!! TGTTTATATTTGAGACCATA+AGG + chr1.3:72984215-72984234 None:intergenic 25.0%
!!! TACAATTCGGTTTTATGTAA+AGG - chr1.3:72984116-72984135 MS.gene91308:CDS 25.0%
!!! TAGTGAAAGAAGTATCAATT+GGG + chr1.3:72983677-72983696 None:intergenic 25.0%
!!! TATGATGTTGATAATTGGAA+AGG - chr1.3:72981990-72982009 MS.gene91308:intron 25.0%
!!! TTAGTGAAAGAAGTATCAAT+TGG + chr1.3:72983678-72983697 None:intergenic 25.0%
AAAAATCAAACGATGACGAA+TGG + chr1.3:72983975-72983994 None:intergenic 30.0%
AAAATTGAACCAAAGCAAAC+CGG + chr1.3:72983948-72983967 None:intergenic 30.0%
AACAACTCTAACATTCGATT+TGG - chr1.3:72983997-72984016 MS.gene91308:CDS 30.0%
AATATCAGTAGAAATTTCCC+TGG - chr1.3:72984446-72984465 MS.gene91308:CDS 30.0%
AATCTCCGTAAATATCTACA+TGG + chr1.3:72982186-72982205 None:intergenic 30.0%
ACCAAATATTACTTGTGCTA+TGG + chr1.3:72983763-72983782 None:intergenic 30.0%
ACGCAGTTGAAAATTTGAAA+CGG - chr1.3:72982699-72982718 MS.gene91308:CDS 30.0%
AGGGAAATTTCTACTGATAT+TGG + chr1.3:72984447-72984466 None:intergenic 30.0%
ATAAAAACTTTGGCTGTGAT+TGG - chr1.3:72983312-72983331 MS.gene91308:intron 30.0%
ATTGTGGATACCATGTAAAT+GGG + chr1.3:72984382-72984401 None:intergenic 30.0%
CAAATTCAAACAACTTATGG+TGG + chr1.3:72984648-72984667 None:intergenic 30.0%
CACCACATTGATATTACAAT+TGG - chr1.3:72984953-72984972 MS.gene91308:CDS 30.0%
CACTAAAGAAAATCAGCAAT+TGG - chr1.3:72983215-72983234 MS.gene91308:CDS 30.0%
CATAGCTATCATAGGTATAA+AGG + chr1.3:72982464-72982483 None:intergenic 30.0%
CATTGATATTACAATTGGAG+AGG - chr1.3:72984958-72984977 MS.gene91308:CDS 30.0%
CTATCTTAGTCCCTAAATAT+AGG - chr1.3:72982496-72982515 MS.gene91308:intron 30.0%
CTCCAATTGTAATATCAATG+TGG + chr1.3:72984958-72984977 None:intergenic 30.0%
GAAACGGTGTCTTATAAAAA+GGG - chr1.3:72982715-72982734 MS.gene91308:CDS 30.0%
GACTAAAATCAATGTTCCTT+TGG + chr1.3:72983640-72983659 None:intergenic 30.0%
GGAAGAAATAAAGTTATGAC+TGG - chr1.3:72982968-72982987 MS.gene91308:CDS 30.0%
GTGTCTTATAAAAAGGGATA+AGG - chr1.3:72982721-72982740 MS.gene91308:CDS 30.0%
GTTATGATTAGTAACTATGC+TGG - chr1.3:72983357-72983376 MS.gene91308:intron 30.0%
GTTCCATTGAAACAATTGAT+AGG - chr1.3:72984770-72984789 MS.gene91308:CDS 30.0%
GTTTAATAGAAAGCTATACC+TGG + chr1.3:72983795-72983814 None:intergenic 30.0%
TAATGTTACCACATACCTTA+TGG - chr1.3:72984197-72984216 MS.gene91308:intron 30.0%
TATCAATTGCTTGATCATCA+AGG + chr1.3:72984622-72984641 None:intergenic 30.0%
TATGCTGTAAATTATGTTCG+TGG - chr1.3:72981888-72981907 MS.gene91308:CDS 30.0%
TCTACATGGTGATATATGAT+TGG + chr1.3:72982172-72982191 None:intergenic 30.0%
TGAAACGGTGTCTTATAAAA+AGG - chr1.3:72982714-72982733 MS.gene91308:CDS 30.0%
TGCTAAAGATGATAGACTTA+AGG - chr1.3:72981938-72981957 MS.gene91308:CDS 30.0%
TGGCAGCATATTAAATTTCA+TGG + chr1.3:72982067-72982086 None:intergenic 30.0%
TGGTTCGAAAAACTACAATT+CGG - chr1.3:72984103-72984122 MS.gene91308:CDS 30.0%
TGTCATGTGCTCATATAATA+GGG - chr1.3:72982287-72982306 MS.gene91308:intron 30.0%
TTCTGGATCATTATAGTAGA+AGG + chr1.3:72984563-72984582 None:intergenic 30.0%
! AATTTTCACTGTTAGTCCAA+AGG + chr1.3:72984339-72984358 None:intergenic 30.0%
! ACTAAAAGTGTAAGCAACAT+AGG - chr1.3:72983693-72983712 MS.gene91308:intron 30.0%
! AGAACATACAGGTTTTACAA+TGG - chr1.3:72984470-72984489 MS.gene91308:CDS 30.0%
! ATTTGAAAGAGCACAAGTTA+AGG - chr1.3:72984793-72984812 MS.gene91308:CDS 30.0%
! GAACATACAGGTTTTACAAT+GGG - chr1.3:72984471-72984490 MS.gene91308:CDS 30.0%
! TCCAATTGCTTATGCATTTT+TGG + chr1.3:72982087-72982106 None:intergenic 30.0%
! TTAAGTTAGCTTGACATGTA+AGG + chr1.3:72982423-72982442 None:intergenic 30.0%
! TTATATTTGAGACTTGAGAC+CGG - chr1.3:72984291-72984310 MS.gene91308:intron 30.0%
! TTGAAATGGATGTGTTTTTC+TGG + chr1.3:72984580-72984599 None:intergenic 30.0%
!! CTAAGTAATGTTGATAGTGA+TGG - chr1.3:72984863-72984882 MS.gene91308:CDS 30.0%
!! CTGCTTATGATGTTGATAAT+TGG - chr1.3:72981985-72982004 MS.gene91308:intron 30.0%
!! GCATGTTTTTGACTAGTAAT+TGG + chr1.3:72981411-72981430 None:intergenic 30.0%
!! GGTTTTATGTAAAGGTAGTT+CGG - chr1.3:72984124-72984143 MS.gene91308:intron 30.0%
!!! AATGGAAAGTTGCTAGTTTT+AGG + chr1.3:72981450-72981469 None:intergenic 30.0%
AAAACCTGTATGTTCTTCCA+GGG + chr1.3:72984466-72984485 None:intergenic 35.0%
AAAGTGTAAGCAACATAGGA+GGG - chr1.3:72983697-72983716 MS.gene91308:intron 35.0%
ACCAATCTATAGAAGCAGAA+GGG - chr1.3:72983547-72983566 MS.gene91308:intron 35.0%
ACTTCTGTAGTCCTTGTAAA+GGG + chr1.3:72983404-72983423 None:intergenic 35.0%
ACTTGATCGACATATGATTG+TGG + chr1.3:72984398-72984417 None:intergenic 35.0%
AGCTATGTACAATGTGGATT+TGG - chr1.3:72981764-72981783 MS.gene91308:CDS 35.0%
ATATTATGGGTAGGTTATCC+TGG - chr1.3:72983720-72983739 MS.gene91308:intron 35.0%
ATCCATAGCCAAATTCATAG+AGG + chr1.3:72984502-72984521 None:intergenic 35.0%
CAAAAACATGCATGTGACAA+AGG - chr1.3:72981420-72981439 MS.gene91308:CDS 35.0%
CAACATAGGAGGGATATTAT+GGG - chr1.3:72983707-72983726 MS.gene91308:intron 35.0%
CGAACTTAACTAAACCAATC+CGG - chr1.3:72983926-72983945 MS.gene91308:intron 35.0%
CGCGAAAAACATTCACATTA+GGG + chr1.3:72981809-72981828 None:intergenic 35.0%
CTTGTAAAGGGCTTGAATAT+CGG + chr1.3:72983392-72983411 None:intergenic 35.0%
GACTATGTAGTTGTATACCA+AGG + chr1.3:72983124-72983143 None:intergenic 35.0%
GATTGTGGATACCATGTAAA+TGG + chr1.3:72984383-72984402 None:intergenic 35.0%
GCATATCTAGAAACAACCAA+AGG + chr1.3:72981873-72981892 None:intergenic 35.0%
GCCAAAAATGCATAAGCAAT+TGG - chr1.3:72982083-72982102 MS.gene91308:intron 35.0%
GCCATAGCACAAGTAATATT+TGG - chr1.3:72983759-72983778 MS.gene91308:intron 35.0%
GTGTCATGTGCTCATATAAT+AGG - chr1.3:72982286-72982305 MS.gene91308:intron 35.0%
GTTACTAATCATAACTGTGG+TGG + chr1.3:72983352-72983371 None:intergenic 35.0%
GTTCTGCTTGAAAACAACAA+AGG - chr1.3:72983264-72983283 MS.gene91308:CDS 35.0%
TAAAACCTGTATGTTCTTCC+AGG + chr1.3:72984467-72984486 None:intergenic 35.0%
TACATAGTCCTAATGAGACT+TGG - chr1.3:72983135-72983154 MS.gene91308:CDS 35.0%
TACTTCTGTAGTCCTTGTAA+AGG + chr1.3:72983405-72983424 None:intergenic 35.0%
TAGTGATGGTAAACGAAAGT+TGG - chr1.3:72984877-72984896 MS.gene91308:CDS 35.0%
TATGGTCTCATATATCATGC+AGG - chr1.3:72983009-72983028 MS.gene91308:CDS 35.0%
TCCATAGCCAAATTCATAGA+GGG + chr1.3:72984501-72984520 None:intergenic 35.0%
TCGCGAAAAACATTCACATT+AGG + chr1.3:72981810-72981829 None:intergenic 35.0%
TCTTTAGTGCATACATCAGA+TGG + chr1.3:72983204-72983223 None:intergenic 35.0%
TGCTCATATAATAGGGTGAA+TGG - chr1.3:72982294-72982313 MS.gene91308:intron 35.0%
TTGCAAATGGAAGTGACTTT+GGG + chr1.3:72983173-72983192 None:intergenic 35.0%
TTGTGGATACCATGTAAATG+GGG + chr1.3:72984381-72984400 None:intergenic 35.0%
TTTGCAAATGGAAGTGACTT+TGG + chr1.3:72983174-72983193 None:intergenic 35.0%
! AAAAGTGTAAGCAACATAGG+AGG - chr1.3:72983696-72983715 MS.gene91308:intron 35.0%
! AAAGAGCACAAGTTAAGGTT+GGG - chr1.3:72984798-72984817 MS.gene91308:CDS 35.0%
! AAGAACAATGGACCTTTTGA+TGG - chr1.3:72984692-72984711 MS.gene91308:CDS 35.0%
! ATATTTACGGAGATTTTCGC+AGG - chr1.3:72982191-72982210 MS.gene91308:intron 35.0%
! ATATTTGGTGACTATAACCC+AGG - chr1.3:72983774-72983793 MS.gene91308:intron 35.0%
! ATTTGAGACCATAAGGTATG+TGG + chr1.3:72984208-72984227 None:intergenic 35.0%
! TTGACATTTTCGCTTGTGAT+TGG - chr1.3:72984665-72984684 MS.gene91308:CDS 35.0%
!! ATAATTGGAAAGGCGTTGAT+CGG - chr1.3:72982000-72982019 MS.gene91308:intron 35.0%
!! ATTTTAGTCATAATGGCAGC+AGG - chr1.3:72983651-72983670 MS.gene91308:intron 35.0%
!! CTCTAACATTCGATTTGGTT+TGG - chr1.3:72984002-72984021 MS.gene91308:CDS 35.0%
!! GATAGTGAAGTGTTGCAAAA+TGG + chr1.3:72981468-72981487 None:intergenic 35.0%
!! TCATGTGGTGTTAGTGTTTT+TGG - chr1.3:72984718-72984737 MS.gene91308:CDS 35.0%
!!! ATTTGGCTGGTTTGACATTT+TGG - chr1.3:72981781-72981800 MS.gene91308:CDS 35.0%
AACACACAGCTCTTAAATGG+AGG + chr1.3:72982249-72982268 None:intergenic 40.0%
AATGTTTGCACTGCATCCTT+TGG - chr1.3:72984320-72984339 MS.gene91308:CDS 40.0%
ACAAGCTTCTCTTGAAATCC+AGG + chr1.3:72983597-72983616 None:intergenic 40.0%
ACCACATGAGATCCATCAAA+AGG + chr1.3:72984707-72984726 None:intergenic 40.0%
AGAGAAGCTTGTGAAAGATG+TGG - chr1.3:72983605-72983624 MS.gene91308:intron 40.0%
AGCTAGAGCTATGTACAATG+TGG - chr1.3:72981758-72981777 MS.gene91308:CDS 40.0%
ATAGGAGGGATATTATGGGT+AGG - chr1.3:72983711-72983730 MS.gene91308:intron 40.0%
ATCTATTGTAGACCAAGCCT+TGG - chr1.3:72983104-72983123 MS.gene91308:CDS 40.0%
ATCTTATGAAACCAGAGCCA+AGG - chr1.3:72981485-72981504 MS.gene91308:CDS 40.0%
ATGTACAATGTGGATTTGGC+TGG - chr1.3:72981768-72981787 MS.gene91308:CDS 40.0%
ATTTAAGAGCTGTGTGTTGG+AGG - chr1.3:72982251-72982270 MS.gene91308:intron 40.0%
ATTTCCCTGGAAGAACATAC+AGG - chr1.3:72984459-72984478 MS.gene91308:CDS 40.0%
CAAAGAAGCCAAGTCTCATT+AGG + chr1.3:72983146-72983165 None:intergenic 40.0%
CAACTAGTAAACCCTTCTAC+CGG - chr1.3:72981546-72981565 MS.gene91308:CDS 40.0%
CGATATTCAAGCCCTTTACA+AGG - chr1.3:72983390-72983409 MS.gene91308:intron 40.0%
CTCATGTTCATGTCTGTCAT+TGG + chr1.3:72984422-72984441 None:intergenic 40.0%
CTTCATGGTGTCTCAAATGT+AGG - chr1.3:72981615-72981634 MS.gene91308:CDS 40.0%
GACCAATCTATAGAAGCAGA+AGG - chr1.3:72983546-72983565 MS.gene91308:intron 40.0%
GCAACATAGGAGGGATATTA+TGG - chr1.3:72983706-72983725 MS.gene91308:intron 40.0%
GCAGGTTTAAACATGAACTG+CGG - chr1.3:72983027-72983046 MS.gene91308:CDS 40.0%
GGGAAATCCCTCTATGAATT+TGG - chr1.3:72984491-72984510 MS.gene91308:CDS 40.0%
GTGATTGGTGTGAAGAACAA+TGG - chr1.3:72984680-72984699 MS.gene91308:CDS 40.0%
TCACTTCCATTTGCAAACCT+TGG - chr1.3:72983177-72983196 MS.gene91308:CDS 40.0%
TCCAACACACAGCTCTTAAA+TGG + chr1.3:72982252-72982271 None:intergenic 40.0%
TCCATTTAAGAGCTGTGTGT+TGG - chr1.3:72982248-72982267 MS.gene91308:intron 40.0%
TCCCTCTATGAATTTGGCTA+TGG - chr1.3:72984497-72984516 MS.gene91308:CDS 40.0%
TGTAGTTGTATACCAAGGCT+TGG + chr1.3:72983119-72983138 None:intergenic 40.0%
TGTTTCAGACTGTGATTCAG+TGG - chr1.3:72982829-72982848 MS.gene91308:CDS 40.0%
TTTAAGAGCTGTGTGTTGGA+GGG - chr1.3:72982252-72982271 MS.gene91308:intron 40.0%
! AGAGTTAACTTGACATTGCC+TGG - chr1.3:72983576-72983595 MS.gene91308:intron 40.0%
! GAAAGAGCACAAGTTAAGGT+TGG - chr1.3:72984797-72984816 MS.gene91308:CDS 40.0%
! TAAACCAATCCGGTTTGCTT+TGG - chr1.3:72983936-72983955 MS.gene91308:intron 40.0%
! TCTTTTTGCAGCAGCAGTTA+AGG - chr1.3:72983482-72983501 MS.gene91308:CDS 40.0%
! TTGGTGTTCCTGCTTATGAA+TGG - chr1.3:72981580-72981599 MS.gene91308:CDS 40.0%
!! ACCTTTTGATGGATCTCATG+TGG - chr1.3:72984703-72984722 MS.gene91308:CDS 40.0%
!! GGTAAACGAAAGTTGGTGAT+TGG - chr1.3:72984884-72984903 MS.gene91308:CDS 40.0%
!! TCGGTTCCATTTTGATGCTA+AGG - chr1.3:72982019-72982038 MS.gene91308:intron 40.0%
AAAGACTCCTGAAGATGCAG+TGG - chr1.3:72982880-72982899 MS.gene91308:CDS 45.0%
AAAGGGCTTGAATATCGGCA+TGG + chr1.3:72983387-72983406 None:intergenic 45.0%
AACACCAAGCCTTGAAATGC+CGG + chr1.3:72981568-72981587 None:intergenic 45.0%
ACTGTGGTGGCATTTGCATT+TGG + chr1.3:72983339-72983358 None:intergenic 45.0%
AGAAGGAGCAGATGCTATGT+GGG + chr1.3:72984546-72984565 None:intergenic 45.0%
ATCTATAGAAGCAGAAGGGC+TGG - chr1.3:72983551-72983570 MS.gene91308:intron 45.0%
ATTACACCTTGGAGAAGGTC+TGG + chr1.3:72982339-72982358 None:intergenic 45.0%
CAGTGCAAACATTACTCCTC+CGG + chr1.3:72984313-72984332 None:intergenic 45.0%
CTCTGATTACACCTTGGAGA+AGG + chr1.3:72982344-72982363 None:intergenic 45.0%
CTTCTCCAAGGTGTAATCAG+AGG - chr1.3:72982342-72982361 MS.gene91308:intron 45.0%
GATGGTCCAAGGTTTGCAAA+TGG + chr1.3:72983186-72983205 None:intergenic 45.0%
GATTGGACAGCACACTATTC+TGG - chr1.3:72984901-72984920 MS.gene91308:CDS 45.0%
GCCCTTCTGCTTCTATAGAT+TGG + chr1.3:72983551-72983570 None:intergenic 45.0%
GTAGGTTATCCTGGTCAAGA+TGG - chr1.3:72983729-72983748 MS.gene91308:intron 45.0%
GTGTCTCAAATGTAGGACCA+GGG - chr1.3:72981622-72981641 MS.gene91308:CDS 45.0%
GTGTTCCTGCTTATGAATGG+TGG - chr1.3:72981583-72981602 MS.gene91308:CDS 45.0%
TAAGCGTGACACTAAGTCCT+TGG + chr1.3:72981505-72981524 None:intergenic 45.0%
TAGAAGGAGCAGATGCTATG+TGG + chr1.3:72984547-72984566 None:intergenic 45.0%
TCTGACCACCATTCATAAGC+AGG + chr1.3:72981591-72981610 None:intergenic 45.0%
TCTTCAGTAACTTACGCGCA+TGG - chr1.3:72983429-72983448 MS.gene91308:intron 45.0%
TGAACCAAAGCAAACCGGAT+TGG + chr1.3:72983943-72983962 None:intergenic 45.0%
TGCATACATCAGATGGTCCA+AGG + chr1.3:72983197-72983216 None:intergenic 45.0%
TGCTATGTGGGTAGAGAATG+TGG + chr1.3:72984534-72984553 None:intergenic 45.0%
TGCTTATGAATGGTGGTCAG+AGG - chr1.3:72981590-72981609 MS.gene91308:CDS 45.0%
! AACGAACCTTCATACCGGTT+CGG - chr1.3:72984163-72984182 MS.gene91308:intron 45.0%
! GTTCGTGGACTACAAGAAGT+TGG - chr1.3:72981903-72981922 MS.gene91308:CDS 45.0%
! TATTTGAGACTTGAGACCGG+AGG - chr1.3:72984294-72984313 MS.gene91308:intron 45.0%
! TGAATGTTTTTCGCGATCCG+AGG - chr1.3:72981814-72981833 MS.gene91308:CDS 45.0%
! TTTTGCAGCAGCAGTTAAGG+CGG - chr1.3:72983485-72983504 MS.gene91308:CDS 45.0%
!! AGTGGTGTTGGTTGTTGGAT+TGG - chr1.3:72983524-72983543 MS.gene91308:intron 45.0%
!! GATACAGTGGTGTTGGTTGT+TGG - chr1.3:72983519-72983538 MS.gene91308:intron 45.0%
AACTCCAGGGGAAGATCCTT+TGG - chr1.3:72981854-72981873 MS.gene91308:CDS 50.0%
AAGGTGTAATCAGAGGCCAG+TGG - chr1.3:72982349-72982368 MS.gene91308:intron 50.0%
ACAACCAAAGGATCTTCCCC+TGG + chr1.3:72981861-72981880 None:intergenic 50.0%
ACCCTTCTACCGGCATTTCA+AGG - chr1.3:72981556-72981575 MS.gene91308:CDS 50.0%
AGCCTTGAAATGCCGGTAGA+AGG + chr1.3:72981561-72981580 None:intergenic 50.0%
AGGTCTGGATCAGCACATGT+AGG + chr1.3:72982324-72982343 None:intergenic 50.0%
AGGTGTAATCAGAGGCCAGT+GGG - chr1.3:72982350-72982369 MS.gene91308:intron 50.0%
CAACACCACTGTATCAGCAG+AGG + chr1.3:72983514-72983533 None:intergenic 50.0%
CCAAGTTCAGAAGTGGTGAG+TGG - chr1.3:72984746-72984765 MS.gene91308:CDS 50.0%
CCACTCACCACTTCTGAACT+TGG + chr1.3:72984749-72984768 None:intergenic 50.0%
CGGTATGAAGGTTCGTTCAC+CGG + chr1.3:72984160-72984179 None:intergenic 50.0%
CGGTGAACGAACCTTCATAC+CGG - chr1.3:72984158-72984177 MS.gene91308:intron 50.0%
CTCACCACTTCTGAACTTGG+TGG + chr1.3:72984746-72984765 None:intergenic 50.0%
CTCTGCTGATACAGTGGTGT+TGG - chr1.3:72983512-72983531 MS.gene91308:CDS 50.0%
GCAGCTGATAGTATCACTGC+TGG + chr1.3:72981687-72981706 None:intergenic 50.0%
GCAGGTGACAAAGCAAGACT+TGG - chr1.3:72982209-72982228 MS.gene91308:intron 50.0%
GCATTTCCTCCATCTTGACC+AGG + chr1.3:72983741-72983760 None:intergenic 50.0%
GCCTTGAAATGCCGGTAGAA+GGG + chr1.3:72981560-72981579 None:intergenic 50.0%
GGACAGCACACTATTCTGGT+TGG - chr1.3:72984905-72984924 MS.gene91308:CDS 50.0%
GGTGACAAAGCAAGACTTGG+AGG - chr1.3:72982212-72982231 MS.gene91308:intron 50.0%
GGTGTCTCAAATGTAGGACC+AGG - chr1.3:72981621-72981640 MS.gene91308:CDS 50.0%
GGTTATCCTGGTCAAGATGG+AGG - chr1.3:72983732-72983751 MS.gene91308:intron 50.0%
GTAGTTCGGAACCACAGAAC+CGG - chr1.3:72984138-72984157 MS.gene91308:intron 50.0%
GTGGTAGGTCCCCATTTACA+TGG - chr1.3:72984369-72984388 MS.gene91308:CDS 50.0%
TCTACCGGCATTTCAAGGCT+TGG - chr1.3:72981561-72981580 MS.gene91308:CDS 50.0%
TGACACTAAGTCCTTGGCTC+TGG + chr1.3:72981499-72981518 None:intergenic 50.0%
TTATTACCGTCGTCCCGAAC+CGG + chr1.3:72984180-72984199 None:intergenic 50.0%
! ACTGGCCTCTGATTACACCT+TGG + chr1.3:72982350-72982369 None:intergenic 50.0%
! ATGTTTTTCGCGATCCGAGG+TGG - chr1.3:72981817-72981836 MS.gene91308:CDS 50.0%
! TGTTTTTCGCGATCCGAGGT+GGG - chr1.3:72981818-72981837 MS.gene91308:CDS 50.0%
!! ACGAACCTTCATACCGGTTC+GGG - chr1.3:72984164-72984183 MS.gene91308:intron 50.0%
CAAACCCATCTAGACCCCAC+TGG + chr1.3:72982368-72982387 None:intergenic 55.0%
GATGTGGCTGCTGCTACCAA+AGG - chr1.3:72983621-72983640 MS.gene91308:intron 55.0%
GCAAGAGCCACTGCATCTTC+AGG + chr1.3:72982890-72982909 None:intergenic 55.0%
GCGTGGACAAGAAACTCCAG+GGG - chr1.3:72981842-72981861 MS.gene91308:CDS 55.0%
GCTGATCCAGACCTTCTCCA+AGG - chr1.3:72982330-72982349 MS.gene91308:intron 55.0%
GCTGGAAAGCTAGTAGCACC+TGG + chr1.3:72981669-72981688 None:intergenic 55.0%
GGAGCCACCAAGTTCAGAAG+TGG - chr1.3:72984739-72984758 MS.gene91308:CDS 55.0%
GGCGTGGACAAGAAACTCCA+GGG - chr1.3:72981841-72981860 MS.gene91308:CDS 55.0%
GGTGTAATCAGAGGCCAGTG+GGG - chr1.3:72982351-72982370 MS.gene91308:intron 55.0%
GTGGCTCTTGCACTGAAAGC+AGG - chr1.3:72982899-72982918 MS.gene91308:CDS 55.0%
! GTTTTTCGCGATCCGAGGTG+GGG - chr1.3:72981819-72981838 MS.gene91308:CDS 55.0%
! TTTTTCGCGATCCGAGGTGG+GGG - chr1.3:72981820-72981839 MS.gene91308:CDS 55.0%
!! AGGTTCGTTCACCGGTTCTG+TGG + chr1.3:72984152-72984171 None:intergenic 55.0%
!! GCTCTAGAAGCTGCGAAGCA+AGG - chr1.3:72983237-72983256 MS.gene91308:CDS 55.0%
!! TGGTGGTCAGAGGCACTTCA+TGG - chr1.3:72981600-72981619 MS.gene91308:CDS 55.0%
!! TTCATACCGGTTCGGGACGA+CGG - chr1.3:72984171-72984190 MS.gene91308:intron 55.0%
AGAGGCCAGTGGGGTCTAGA+TGG - chr1.3:72982360-72982379 MS.gene91308:intron 60.0%
AGGGACGCGTTTCGACAGCA+GGG - chr1.3:72981641-72981660 MS.gene91308:CDS 60.0%
GAGGCCAGTGGGGTCTAGAT+GGG - chr1.3:72982361-72982380 MS.gene91308:intron 60.0%
GGCAGCCTCTGCTGATACAG+TGG - chr1.3:72983506-72983525 MS.gene91308:CDS 60.0%
GGGCGTGGACAAGAAACTCC+AGG - chr1.3:72981840-72981859 MS.gene91308:CDS 60.0%
GTCGTCCCGAACCGGTATGA+AGG + chr1.3:72984172-72984191 None:intergenic 60.0%
! CGTTTCGACAGCAGGGTACC+AGG - chr1.3:72981648-72981667 MS.gene91308:CDS 60.0%
CAGGGACGCGTTTCGACAGC+AGG - chr1.3:72981640-72981659 MS.gene91308:CDS 65.0%
CTGCTGTCGAAACGCGTCCC+TGG + chr1.3:72981642-72981661 None:intergenic 65.0%
TCTTGTCCACGCCCCCACCT+CGG + chr1.3:72981834-72981853 None:intergenic 65.0%
! CGCGATCCGAGGTGGGGGCG+TGG - chr1.3:72981825-72981844 MS.gene91308:CDS 80.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 72981357 72984997 72981357 ID=MS.gene91308
chr1.3 mRNA 72981357 72984997 72981357 ID=MS.gene91308.t1;Parent=MS.gene91308
chr1.3 exon 72984314 72984997 72984314 ID=MS.gene91308.t1.exon1;Parent=MS.gene91308.t1
chr1.3 CDS 72984314 72984997 72984314 ID=cds.MS.gene91308.t1;Parent=MS.gene91308.t1
chr1.3 exon 72983972 72984141 72983972 ID=MS.gene91308.t1.exon2;Parent=MS.gene91308.t1
chr1.3 CDS 72983972 72984141 72983972 ID=cds.MS.gene91308.t1;Parent=MS.gene91308.t1
chr1.3 exon 72983434 72983531 72983434 ID=MS.gene91308.t1.exon3;Parent=MS.gene91308.t1
chr1.3 CDS 72983434 72983531 72983434 ID=cds.MS.gene91308.t1;Parent=MS.gene91308.t1
chr1.3 exon 72982559 72983323 72982559 ID=MS.gene91308.t1.exon4;Parent=MS.gene91308.t1
chr1.3 CDS 72982559 72983323 72982559 ID=cds.MS.gene91308.t1;Parent=MS.gene91308.t1
chr1.3 exon 72981357 72981985 72981357 ID=MS.gene91308.t1.exon5;Parent=MS.gene91308.t1
chr1.3 CDS 72981357 72981985 72981357 ID=cds.MS.gene91308.t1;Parent=MS.gene91308.t1
Gene Sequence

>MS.gene91308

ATGAAAAATCATCTTTTGTTCACATGTATTTTCTTTTCATTTTTGATACATCCAATTACTAGTCAAAAACATGCATGTGACAAAGGCTCTCCTAAAACTAGCAACTTTCCATTTTGCAACACTTCACTATCTTATGAAACCAGAGCCAAGGACTTAGTGTCACGCTTAACACTTCAAGAAAAAGCACAACAACTAGTAAACCCTTCTACCGGCATTTCAAGGCTTGGTGTTCCTGCTTATGAATGGTGGTCAGAGGCACTTCATGGTGTCTCAAATGTAGGACCAGGGACGCGTTTCGACAGCAGGGTACCAGGTGCTACTAGCTTTCCAGCAGTGATACTATCAGCTGCTAGTTTTAATGAAACATTATGGTACAAAATGGGACAAGTTGTGTCAAATGAAGCTAGAGCTATGTACAATGTGGATTTGGCTGGTTTGACATTTTGGAGCCCTAATGTGAATGTTTTTCGCGATCCGAGGTGGGGGCGTGGACAAGAAACTCCAGGGGAAGATCCTTTGGTTGTTTCTAGATATGCTGTAAATTATGTTCGTGGACTACAAGAAGTTGGTGATGAAGCAAGTGCTAAAGATGATAGACTTAAGGTTTCTAGCTGTTGTAAGCATTATACTGCTTATGATGTTGATAATTGGAAAGGCGTTGATCGGTTCCATTTTGATGCTAAGGTAATAAAGATAACAAAATTAGACCATGAAATTTAATATGCTGCCAAAAATGCATAAGCAATTGGATCATGATGAGAGAATAATTTAATGACTATCACCGAACGAGTTAAATATTTTTACAACTGCATCCAATCATATATCACCATGTAGATATTTACGGAGATTTTCGCAGGTGACAAAGCAAGACTTGGAGGATACTTATCAGCCTCCATTTAAGAGCTGTGTGTTGGAGGGACATGTTAGCAGTGTCATGTGCTCATATAATAGGGTGAATGGAATTCCTACATGTGCTGATCCAGACCTTCTCCAAGGTGTAATCAGAGGCCAGTGGGGTCTAGATGGGTTTGTCTCTATCCCTAAGCAATCATTTGATTTTTTTCCTTACATGTCAAGCTAACTTAAACACTAAAGCAATTTATACCTTTATACCTATGATAGCTATGATAAACTACATACTATCTTAGTCCCTAAATATAGGATTTAGTTGACTAAATTACTAGAATTTGGAAAGTTGGTATAGCAGTATGAAATTTGTTAAGAATTAGTAGTATTGTTTTACAGGAAAGACAACTAATTTATATTTCTATCATAGTATTTATTACAGGTTGTAGAAAAGGATGTAACGTAATTAAGAGTATGTTGATAAAAATAATAATTAACGCAGTTGAAAATTTGAAACGGTGTCTTATAAAAAGGGATAAGGAAAAATCTCAACATAATCTTATATTTAGAGACAGATAACTAAAAGAAGCTCCCTGATATCTTATACTTTTTTTGAACAGATATATTGTTTCAGACTGTGATTCAGTGGAAGTTTATTACGACTCAATTCATTACACAAAGACTCCTGAAGATGCAGTGGCTCTTGCACTGAAAGCAGGTAATCAAGTAGAACTGAAGTTGAAACTGCAAAAAAAATTCTGATTGGGAAGAAATAAAGTTATGACTGGTATTGGATTATTAAATGGTATGGTCTCATATATCATGCAGGTTTAAACATGAACTGCGGCGACTTTCTTAAAAAGTACACTGCAAATGCTGTAAACTTGAAGAAAGTAGATGTATCTATTGTAGACCAAGCCTTGGTATACAACTACATAGTCCTAATGAGACTTGGCTTCTTTGAAAACCCAAAGTCACTTCCATTTGCAAACCTTGGACCATCTGATGTATGCACTAAAGAAAATCAGCAATTGGCTCTAGAAGCTGCGAAGCAAGGAATAGTTCTGCTTGAAAACAACAAAGGAGCTCTTCCTTTATCAAAAACTAAGATAAAAACTTTGGCTGTGATTGGACCAAATGCAAATGCCACCACAGTTATGATTAGTAACTATGCTGGCATACCATGCCGATATTCAAGCCCTTTACAAGGACTACAGAAGTACATTTCTTCAGTAACTTACGCGCATGGTTGCAGTGATGTTAAATGCAGTAATCAGAATCTTTTTGCAGCAGCAGTTAAGGCGGCAGCCTCTGCTGATACAGTGGTGTTGGTTGTTGGATTGGACCAATCTATAGAAGCAGAAGGGCTGGATAGAGTTAACTTGACATTGCCTGGATTTCAAGAGAAGCTTGTGAAAGATGTGGCTGCTGCTACCAAAGGAACATTGATTTTAGTCATAATGGCAGCAGGCCCAATTGATACTTCTTTCACTAAAAGTGTAAGCAACATAGGAGGGATATTATGGGTAGGTTATCCTGGTCAAGATGGAGGAAATGCCATAGCACAAGTAATATTTGGTGACTATAACCCAGGTATAGCTTTCTATTAAACTATTAAAATACCTACATTTATCTTTACATATTTTGTTACCTATGACAGTAAAAAAAACATTAATTGATCTGTTAAACTGAACTGAAAAATATGAAATGTGCTGATAGTTCACGAACTTAACTAAACCAATCCGGTTTGCTTTGGTTCAATTTTTGAACCATTCGTCATCGTTTGATTTTTTAAACAACTCTAACATTCGATTTGGTTTGGTTTTTGATATTTTTTCAATAATCCTAATTATCAATTTATAATAGCAATTCGACGTACTTTGATTCATAAAAATCAGTTTGGTTCGAAAAACTACAATTCGGTTTTATGTAAAGGTAGTTCGGAACCACAGAACCGGTGAACGAACCTTCATACCGGTTCGGGACGACGGTAATAATGTTACCACATACCTTATGGTCTCAAATATAAACAAACAAGTCTGCACATTTAATCCAAGTTTATACCAAACACATAAACTTTTATTTTTCTTATATTTGAGACTTGAGACCGGAGGAGTAATGTTTGCACTGCATCCTTTGGACTAACAGTGAAAATTTTATTTATAGGTGGTAGGTCCCCATTTACATGGTATCCACAATCATATGTCGATCAAGTTCCAATGACAGACATGAACATGAGAGCCAATATCAGTAGAAATTTCCCTGGAAGAACATACAGGTTTTACAATGGGAAATCCCTCTATGAATTTGGCTATGGATTAAGCTACTCCACATTCTCTACCCACATAGCATCTGCTCCTTCTACTATAATGATCCAGAAAAACACATCCATTTCAAAACCACTTAATAATATCTTCCTTGATGATCAAGCAATTGATATTTCCACCATAAGTTGTTTGAATTTGACATTTTCGCTTGTGATTGGTGTGAAGAACAATGGACCTTTTGATGGATCTCATGTGGTGTTAGTGTTTTTGGAGCCACCAAGTTCAGAAGTGGTGAGTGGTGTTCCATTGAAACAATTGATAGGATTTGAAAGAGCACAAGTTAAGGTTGGGATGACAGAGTTTGTGACAGTGAAAATTGATATATGCAAATTGCTAAGTAATGTTGATAGTGATGGTAAACGAAAGTTGGTGATTGGACAGCACACTATTCTGGTTGGAGCTTCTAGCGAAAAACAAGTTACACACCACATTGATATTACAATTGGAGAGGAATTTATGTCTGAGTGA
Protein sequence

>MS.gene91308.t1

MKNHLLFTCIFFSFLIHPITSQKHACDKGSPKTSNFPFCNTSLSYETRAKDLVSRLTLQEKAQQLVNPSTGISRLGVPAYEWWSEALHGVSNVGPGTRFDSRVPGATSFPAVILSAASFNETLWYKMGQVVSNEARAMYNVDLAGLTFWSPNVNVFRDPRWGRGQETPGEDPLVVSRYAVNYVRGLQEVGDEASAKDDRLKVSSCCKHYTAYDVDNWKGVDRFHFDAKVTKQDLEDTYQPPFKSCVLEGHVSSVMCSYNRVNGIPTCADPDLLQGVIRGQWGLDGYIVSDCDSVEVYYDSIHYTKTPEDAVALALKAGLNMNCGDFLKKYTANAVNLKKVDVSIVDQALVYNYIVLMRLGFFENPKSLPFANLGPSDVCTKENQQLALEAAKQGIVLLENNKGALPLSKTKIKTLAVIGPNANATTVMISNYAGIPCRYSSPLQGLQKYISSVTYAHGCSDVKCSNQNLFAAAVKAAASADTVVLVVGLDQSIEAEGLDRVNLTLPGFQEKLVKDVAAATKGTLILVIMAAGPIDTSFTKSVSNIGGILWVGYPGQDGGNAIAQVIFGDYNPGGRSPFTWYPQSYVDQVPMTDMNMRANISRNFPGRTYRFYNGKSLYEFGYGLSYSTFSTHIASAPSTIMIQKNTSISKPLNNIFLDDQAIDISTISCLNLTFSLVIGVKNNGPFDGSHVVLVFLEPPSSEVVSGVPLKQLIGFERAQVKVGMTEFVTVKIDICKLLSNVDSDGKRKLVIGQHTILVGASSEKQVTHHIDITIGEEFMSE