Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene036431.t1 | XP_003590981.1 | 98.2 | 560 | 10 | 0 | 1 | 560 | 1 | 560 | 4.50E-304 | 1053.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene036431.t1 | G7I6T7 | 98.2 | 560 | 10 | 0 | 1 | 560 | 1 | 560 | 3.2e-304 | 1053.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene000193 | MS.gene036431 | PPI |
MS.gene60881 | MS.gene036431 | PPI |
MS.gene061203 | MS.gene036431 | PPI |
MS.gene60886 | MS.gene036431 | PPI |
MS.gene036431 | MS.gene000192 | PPI |
MS.gene60884 | MS.gene036431 | PPI |
MS.gene000191 | MS.gene036431 | PPI |
MS.gene012606 | MS.gene036431 | PPI |
MS.gene043859 | MS.gene036431 | PPI |
MS.gene33537 | MS.gene036431 | PPI |
MS.gene60887 | MS.gene036431 | PPI |
MS.gene043858 | MS.gene036431 | PPI |
MS.gene036431 | MS.gene60889 | PPI |
MS.gene043855 | MS.gene036431 | PPI |
MS.gene036431 | MS.gene000190 | PPI |
MS.gene036431 | MS.gene60888 | PPI |
MS.gene60883 | MS.gene036431 | PPI |
MS.gene036431 | MS.gene042257 | PPI |
MS.gene042258 | MS.gene036431 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene036431.t1 | MTR_1g080370 | 98.393 | 560 | 9 | 0 | 1 | 560 | 1 | 560 | 0.0 | 1147 |
MS.gene036431.t1 | MTR_1g080410 | 98.393 | 560 | 9 | 0 | 1 | 560 | 1 | 560 | 0.0 | 1147 |
MS.gene036431.t1 | MTR_5g007860 | 55.729 | 576 | 226 | 7 | 5 | 558 | 37 | 605 | 0.0 | 666 |
MS.gene036431.t1 | MTR_4g077620 | 55.185 | 569 | 240 | 8 | 1 | 558 | 3 | 567 | 0.0 | 652 |
MS.gene036431.t1 | MTR_2g062430 | 47.434 | 565 | 265 | 12 | 6 | 558 | 8 | 552 | 1.57e-176 | 510 |
MS.gene036431.t1 | MTR_2g067640 | 45.652 | 552 | 263 | 10 | 20 | 558 | 13 | 540 | 1.55e-171 | 497 |
MS.gene036431.t1 | MTR_2g062410 | 46.196 | 552 | 270 | 10 | 18 | 558 | 50 | 585 | 8.47e-170 | 494 |
MS.gene036431.t1 | MTR_2g062370 | 45.355 | 549 | 271 | 9 | 23 | 558 | 57 | 589 | 6.32e-163 | 476 |
MS.gene036431.t1 | MTR_4g131710 | 44.828 | 551 | 273 | 10 | 23 | 558 | 51 | 585 | 3.36e-162 | 474 |
MS.gene036431.t1 | MTR_2g062380 | 45.996 | 537 | 260 | 9 | 35 | 558 | 40 | 559 | 6.06e-157 | 460 |
MS.gene036431.t1 | MTR_2g062340 | 44.872 | 546 | 242 | 9 | 23 | 558 | 20 | 516 | 6.52e-153 | 448 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene036431.t1 | AT3G04350 | 64.510 | 572 | 186 | 7 | 1 | 560 | 1 | 567 | 0.0 | 759 |
MS.gene036431.t1 | AT5G18490 | 64.825 | 543 | 174 | 7 | 22 | 560 | 24 | 553 | 0.0 | 736 |
MS.gene036431.t1 | AT3G04350 | 65.421 | 535 | 171 | 6 | 35 | 560 | 16 | 545 | 0.0 | 726 |
MS.gene036431.t1 | AT1G04090 | 54.073 | 577 | 243 | 9 | 1 | 560 | 1 | 572 | 0.0 | 654 |
MS.gene036431.t1 | AT5G43950 | 53.752 | 573 | 241 | 9 | 1 | 558 | 1 | 564 | 0.0 | 631 |
MS.gene036431.t1 | AT2G44260 | 45.772 | 544 | 267 | 9 | 23 | 558 | 29 | 552 | 1.00e-169 | 493 |
MS.gene036431.t1 | AT2G44230 | 45.704 | 547 | 261 | 10 | 23 | 558 | 20 | 541 | 2.58e-169 | 491 |
MS.gene036431.t1 | AT2G44260 | 45.677 | 532 | 261 | 9 | 35 | 558 | 71 | 582 | 2.29e-164 | 480 |
MS.gene036431.t1 | AT3G01870 | 41.593 | 565 | 290 | 13 | 11 | 558 | 42 | 583 | 1.83e-141 | 421 |
MS.gene036431.t1 | AT3G01880 | 41.103 | 562 | 291 | 13 | 15 | 558 | 50 | 589 | 2.47e-139 | 416 |
Find 139 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTTCATCAATGACACTTTA+AGG | 0.107306 | 1.4:-65321332 | None:intergenic |
TAAACAAGTTTGAGAAAGTT+TGG | 0.235719 | 1.4:+65320383 | MS.gene036431:CDS |
CTGAGCACAGTGGAGGTAAA+TGG | 0.247800 | 1.4:+65321451 | MS.gene036431:CDS |
TTATTTCCAACAGAGCTTTC+TGG | 0.254169 | 1.4:+65321825 | MS.gene036431:CDS |
CACTTAATTACTCGTTAATA+TGG | 0.260129 | 1.4:+65320605 | MS.gene036431:CDS |
ATTCGATTTGGAGTTTATTA+AGG | 0.263278 | 1.4:+65321482 | MS.gene036431:CDS |
AGCCAATTGTCCTTCTCCTT+TGG | 0.307063 | 1.4:-65321867 | None:intergenic |
GCGAACTCCTATTCCAAGTT+TGG | 0.314359 | 1.4:-65321583 | None:intergenic |
TGTCTTGATGAATAAACTAT+TGG | 0.322222 | 1.4:-65321513 | None:intergenic |
ACAGAAAACCTAACAAATAT+TGG | 0.329471 | 1.4:-65321786 | None:intergenic |
GATATAATGATGGTGCGTTT+TGG | 0.329648 | 1.4:+65321157 | MS.gene036431:CDS |
CATCGAACTTCTTCAACTTT+CGG | 0.340671 | 1.4:-65320727 | None:intergenic |
ATGGGTTAATGCATTCGATT+TGG | 0.345620 | 1.4:+65321470 | MS.gene036431:CDS |
ATGATGAATGTGTTTACTTT+TGG | 0.348745 | 1.4:+65320641 | MS.gene036431:CDS |
TCCTTCTCCTTTGGACCAGT+TGG | 0.349557 | 1.4:-65321858 | None:intergenic |
ACATGCTTCCAATATTTGTT+AGG | 0.353415 | 1.4:+65321778 | MS.gene036431:CDS |
TCTTCAACTTTCGGTTCATC+TGG | 0.355411 | 1.4:-65320718 | None:intergenic |
AATGACACTTTAAGGGTTGC+AGG | 0.360391 | 1.4:-65321324 | None:intergenic |
CATGCTCTCATTGAGCATTA+CGG | 0.360621 | 1.4:+65320991 | MS.gene036431:CDS |
GGAACAATCAGCTTGAGATT+TGG | 0.364813 | 1.4:-65320554 | None:intergenic |
GTTCATCAATGACACTTTAA+GGG | 0.377575 | 1.4:-65321331 | None:intergenic |
GGATCAGAGTCAAAGAATTC+TGG | 0.378539 | 1.4:-65319774 | None:intergenic |
TCTGGTGAGGAGGGGCCAAC+TGG | 0.379305 | 1.4:+65321843 | MS.gene036431:CDS |
ATGCTCTCATTGAGCATTAC+GGG | 0.380356 | 1.4:+65320992 | MS.gene036431:CDS |
TGGAGATGCACAAATTCTAA+TGG | 0.385168 | 1.4:+65320403 | MS.gene036431:CDS |
CTGTTGGAAATAATTCAAAA+AGG | 0.390774 | 1.4:-65321815 | None:intergenic |
AGAGGTGAAGGAAGAGAAAA+GGG | 0.395917 | 1.4:-65319801 | None:intergenic |
AAGAGGTGAAGGAAGAGAAA+AGG | 0.400057 | 1.4:-65319802 | None:intergenic |
TCATGCAGGGACTTACCTTC+AGG | 0.415789 | 1.4:+65321554 | MS.gene036431:CDS |
TGTGGTTGGTAAGAGATGTT+TGG | 0.416589 | 1.4:+65319723 | None:intergenic |
AACTTTCGGTTCATCTGGAC+TGG | 0.420215 | 1.4:-65320713 | None:intergenic |
AGGGTTGCAGGTCCATTGAA+TGG | 0.426014 | 1.4:-65321312 | None:intergenic |
TCCTCGCAACGGCTGATCAT+TGG | 0.426252 | 1.4:-65320503 | None:intergenic |
GTTCATGTAAAACCAGCATT+AGG | 0.426763 | 1.4:+65321252 | MS.gene036431:CDS |
CCGACGGCTTTATAACCCTT+TGG | 0.428360 | 1.4:-65320676 | None:intergenic |
CTTCAGGGATCATCCAAACT+TGG | 0.432488 | 1.4:+65321570 | MS.gene036431:CDS |
CGGTGAACATGTCGGTGATT+GGG | 0.432674 | 1.4:+65321371 | MS.gene036431:CDS |
TCGGTGAACATGTCGGTGAT+TGG | 0.434338 | 1.4:+65321370 | MS.gene036431:CDS |
CATATTAACGAGTAATTAAG+TGG | 0.438102 | 1.4:-65320604 | None:intergenic |
GCAACTTCACCGGAGAGCTT+TGG | 0.443367 | 1.4:+65321415 | MS.gene036431:CDS |
TTATAACCCTTTGGAGGGTT+AGG | 0.448233 | 1.4:-65320667 | None:intergenic |
GGATCATCCAAACTTGGAAT+AGG | 0.450282 | 1.4:+65321576 | MS.gene036431:CDS |
GACGGCATGTATTTCTCATC+AGG | 0.451359 | 1.4:-65321033 | None:intergenic |
CCCAAGGGATATTCTTCCAC+CGG | 0.460403 | 1.4:-65320341 | None:intergenic |
TCCTCACCAGAAAGCTCTGT+TGG | 0.461764 | 1.4:-65321831 | None:intergenic |
GCATGAATCTGGTTGAGATT+CGG | 0.468325 | 1.4:-65320973 | None:intergenic |
AATACACAACCTTGCGATAG+AGG | 0.468770 | 1.4:+65320835 | MS.gene036431:CDS |
CCAAGACAGGAAAATCCATC+TGG | 0.469039 | 1.4:-65320466 | None:intergenic |
GAGGACACGTTCTTGTCGCT+CGG | 0.471944 | 1.4:+65320521 | MS.gene036431:CDS |
TGAGCACAGTGGAGGTAAAT+GGG | 0.475593 | 1.4:+65321452 | MS.gene036431:CDS |
CTTTACTGATATTGCAATGT+GGG | 0.475927 | 1.4:+65321281 | MS.gene036431:CDS |
GAAGGAAGAGAAAAGGGAAG+TGG | 0.478043 | 1.4:-65319795 | None:intergenic |
TGCGAGAAATAATCTTAAGA+AGG | 0.480833 | 1.4:+65321203 | MS.gene036431:CDS |
ACGGCTTTATAACCCTTTGG+AGG | 0.486012 | 1.4:-65320673 | None:intergenic |
ATTGTTGCTGCCGAGTATCT+TGG | 0.490221 | 1.4:+65321657 | MS.gene036431:CDS |
GCTCAATGAGAGCATGAATC+TGG | 0.490735 | 1.4:-65320984 | None:intergenic |
GTCCAAAGGAGAAGGACAAT+TGG | 0.490950 | 1.4:+65321865 | MS.gene036431:CDS |
CTCACAAACTTCTGTTAGAT+CGG | 0.493970 | 1.4:-65320758 | None:intergenic |
GGGTTGCAGGTCCATTGAAT+GGG | 0.500640 | 1.4:-65321311 | None:intergenic |
GCCGGTGGAAGAATATCCCT+TGG | 0.503378 | 1.4:+65320340 | MS.gene036431:CDS |
CTACTTTGATTCTGAACAAG+TGG | 0.505519 | 1.4:+65320903 | MS.gene036431:CDS |
CGGTGAAGTTGCTCACGCGA+AGG | 0.508371 | 1.4:-65321404 | None:intergenic |
TTGTTCCGAGTCAGAATCCT+TGG | 0.510563 | 1.4:+65320570 | MS.gene036431:CDS |
CATGCTAGCTATCCTCATGC+AGG | 0.510869 | 1.4:+65321540 | MS.gene036431:CDS |
CCTTGTGGCCATTGTGGAAG+AGG | 0.512962 | 1.4:-65319819 | None:intergenic |
CCACATTGCAATATCAGTAA+AGG | 0.513990 | 1.4:-65321280 | None:intergenic |
TTGGTTGCCTAACCCTCCAA+AGG | 0.523651 | 1.4:+65320660 | MS.gene036431:CDS |
AATTCTAATGGAAAGGCACT+AGG | 0.529623 | 1.4:+65320415 | MS.gene036431:CDS |
CATGCAGGGACTTACCTTCA+GGG | 0.530671 | 1.4:+65321555 | MS.gene036431:CDS |
AACAGAGCTTTCTGGTGAGG+AGG | 0.540070 | 1.4:+65321833 | MS.gene036431:CDS |
GTATACTGCGGGTAATGCAA+AGG | 0.543009 | 1.4:+65321092 | MS.gene036431:CDS |
ACAGAGCTTTCTGGTGAGGA+GGG | 0.543440 | 1.4:+65321834 | MS.gene036431:CDS |
GTAAAGGCTCCTCCTAATGC+TGG | 0.544725 | 1.4:-65321264 | None:intergenic |
AGGACACGTTCTTGTCGCTC+GGG | 0.549143 | 1.4:+65320522 | MS.gene036431:CDS |
CCGGTGGAAGAATATCCCTT+GGG | 0.549609 | 1.4:+65320341 | MS.gene036431:CDS |
AGACCTTTGGAGATTCCAGA+TGG | 0.551683 | 1.4:+65320451 | MS.gene036431:CDS |
TTCCTTCACCTCTTCCACAA+TGG | 0.552183 | 1.4:+65319811 | MS.gene036431:CDS |
GACTCCATCACCAAGATACT+CGG | 0.556847 | 1.4:-65321667 | None:intergenic |
TTACTCGTTAATATGGTGCA+TGG | 0.557123 | 1.4:+65320612 | MS.gene036431:CDS |
CGGCTTTATAACCCTTTGGA+GGG | 0.557691 | 1.4:-65320672 | None:intergenic |
GGTGAAGTTGCTCACGCGAA+GGG | 0.560176 | 1.4:-65321403 | None:intergenic |
ATTATTTCTCGCATCTTCAT+CGG | 0.561997 | 1.4:-65321193 | None:intergenic |
ACATGCCGTCATCGGTGTCG+TGG | 0.562228 | 1.4:+65321046 | MS.gene036431:CDS |
CGTGAATCATATACAATGGT+AGG | 0.564534 | 1.4:-65321732 | None:intergenic |
TCCAACAGAGCTTTCTGGTG+AGG | 0.565118 | 1.4:+65321830 | MS.gene036431:CDS |
GCGAGAAATAATCTTAAGAA+GGG | 0.567421 | 1.4:+65321204 | MS.gene036431:CDS |
TTTCTCGCATCTTCATCGGT+AGG | 0.570074 | 1.4:-65321189 | None:intergenic |
ATGCACAAATTCTAATGGAA+AGG | 0.570132 | 1.4:+65320408 | MS.gene036431:CDS |
TATACTGCGGGTAATGCAAA+GGG | 0.571900 | 1.4:+65321093 | MS.gene036431:CDS |
CATGTAAAACCAGCATTAGG+AGG | 0.572269 | 1.4:+65321255 | MS.gene036431:CDS |
AACATTGAGATGAACAAGAT+CGG | 0.572272 | 1.4:+65321351 | MS.gene036431:CDS |
TGGTTGCCTAACCCTCCAAA+GGG | 0.582899 | 1.4:+65320661 | MS.gene036431:CDS |
CTTCGCGTGAGCAACTTCAC+CGG | 0.582952 | 1.4:+65321405 | MS.gene036431:CDS |
TGAGAAATACATGCCGTCAT+CGG | 0.585107 | 1.4:+65321038 | MS.gene036431:CDS |
TCCAATGATCAGCCGTTGCG+AGG | 0.585934 | 1.4:+65320502 | MS.gene036431:CDS |
GCCAACTGGTCCAAAGGAGA+AGG | 0.588714 | 1.4:+65321857 | MS.gene036431:CDS |
GTGGCAGTAGTAACCAAGAC+AGG | 0.592567 | 1.4:-65320479 | None:intergenic |
AAGGTTGTGTATTCCAAACC+TGG | 0.594362 | 1.4:-65320825 | None:intergenic |
AATCCATCTGGAATCTCCAA+AGG | 0.594832 | 1.4:-65320454 | None:intergenic |
CTCATATATTGCAACCAACA+TGG | 0.598495 | 1.4:-65321699 | None:intergenic |
AAGAGCCAAGGATTCTGACT+CGG | 0.598761 | 1.4:-65320575 | None:intergenic |
CCTCTTCCACAATGGCCACA+AGG | 0.602749 | 1.4:+65319819 | MS.gene036431:CDS |
GGCACAAATTTACCTGGTGG+AGG | 0.603301 | 1.4:+65321135 | MS.gene036431:CDS |
GGTTGCAATATATGAGAGAG+TGG | 0.604682 | 1.4:+65321706 | MS.gene036431:CDS |
CATTGAGCATTACGGGCCAA+CGG | 0.604760 | 1.4:+65320999 | MS.gene036431:CDS |
CTAGCTAGAGGTGTATCTGT+CGG | 0.607900 | 1.4:+65320862 | MS.gene036431:CDS |
GGTGGTAACTACTATGCCGA+CGG | 0.610312 | 1.4:-65320692 | None:intergenic |
TATCACGGCACAAATTTACC+TGG | 0.610377 | 1.4:+65321129 | MS.gene036431:CDS |
AAGGAGAAGGACAATTGGCT+AGG | 0.611868 | 1.4:+65321870 | MS.gene036431:CDS |
TAGTTTATTCATCAAGACAT+GGG | 0.614112 | 1.4:+65321517 | MS.gene036431:CDS |
CCAAAGGGTTATAAAGCCGT+CGG | 0.615266 | 1.4:+65320676 | MS.gene036431:CDS |
GGAGGGGCCAACTGGTCCAA+AGG | 0.615580 | 1.4:+65321851 | MS.gene036431:CDS |
CCTGGTGGAGGATATAATGA+TGG | 0.615594 | 1.4:+65321147 | MS.gene036431:CDS |
TCAGGATGAAAATATACCGT+TGG | 0.617396 | 1.4:-65321015 | None:intergenic |
CAAGTTTGGATGATCCCTGA+AGG | 0.618933 | 1.4:-65321569 | None:intergenic |
GGTAAAGCTATAGATTATCA+CGG | 0.619614 | 1.4:+65321114 | MS.gene036431:CDS |
TTTCGGTTCATCTGGACTGG+TGG | 0.621856 | 1.4:-65320710 | None:intergenic |
CCTTTACTGATATTGCAATG+TGG | 0.624376 | 1.4:+65321280 | MS.gene036431:CDS |
CACGGCACAAATTTACCTGG+TGG | 0.625316 | 1.4:+65321132 | MS.gene036431:CDS |
ATAATACCTTGTGGCCATTG+TGG | 0.625787 | 1.4:-65319825 | None:intergenic |
CCATCATTATATCCTCCACC+AGG | 0.627153 | 1.4:-65321147 | None:intergenic |
GTTGCAATATATGAGAGAGT+GGG | 0.627285 | 1.4:+65321707 | MS.gene036431:CDS |
GGCCATTGTGGAAGAGGTGA+AGG | 0.627997 | 1.4:-65319813 | None:intergenic |
GCTGCCGAGTATCTTGGTGA+TGG | 0.635810 | 1.4:+65321663 | MS.gene036431:CDS |
GAAGGGAAACATAGAGAGTG+CGG | 0.636222 | 1.4:+65321221 | MS.gene036431:CDS |
TGAAGGTAAGTCCCTGCATG+AGG | 0.636865 | 1.4:-65321552 | None:intergenic |
ATAGTTTATTCATCAAGACA+TGG | 0.637290 | 1.4:+65321516 | MS.gene036431:CDS |
ACAAGAACGTGTCCTCGCAA+CGG | 0.637737 | 1.4:-65320514 | None:intergenic |
TCTGTCGGAACATTCTTCTG+TGG | 0.649136 | 1.4:+65320877 | MS.gene036431:CDS |
AACAAGATCGGTGAACATGT+CGG | 0.653405 | 1.4:+65321363 | MS.gene036431:CDS |
CACTTGTTCAGAATCAAAGT+AGG | 0.653816 | 1.4:-65320902 | None:intergenic |
AGAACGTGAATCATATACAA+TGG | 0.654517 | 1.4:-65321736 | None:intergenic |
GCTAGCATACCTCTATCGCA+AGG | 0.655324 | 1.4:-65320844 | None:intergenic |
ATGCTAGCTATCCTCATGCA+GGG | 0.655682 | 1.4:+65321541 | MS.gene036431:CDS |
CAGAGCTTTCTGGTGAGGAG+GGG | 0.657357 | 1.4:+65321835 | MS.gene036431:CDS |
GCAACGGCTGATCATTGGAG+TGG | 0.664542 | 1.4:-65320498 | None:intergenic |
GAGTCATTACAGAACCATGT+TGG | 0.666649 | 1.4:+65321685 | MS.gene036431:CDS |
TTGCAATATATGAGAGAGTG+GGG | 0.676061 | 1.4:+65321708 | MS.gene036431:CDS |
GATAGAGGTATGCTAGCTAG+AGG | 0.685865 | 1.4:+65320850 | MS.gene036431:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAGAAAAAAATAATAGAAAA+AGG | - | chr1.4:65319862-65319881 | None:intergenic | 10.0% |
!! | AGAAAAAAATAATAGAAAAA+GGG | - | chr1.4:65319861-65319880 | None:intergenic | 10.0% |
!! | AAAAATAATAGAAAAAGGGA+AGG | - | chr1.4:65319857-65319876 | None:intergenic | 20.0% |
!!! | AATACTATTTGATTTCGTTT+TGG | + | chr1.4:65320219-65320238 | MS.gene036431:intron | 20.0% |
!!! | ATATTTGTGCTGTTTTTTAT+TGG | + | chr1.4:65320009-65320028 | MS.gene036431:intron | 20.0% |
!!! | TGCTAAAAGTAATTTTATTC+TGG | + | chr1.4:65321614-65321633 | MS.gene036431:CDS | 20.0% |
! | ACAGAAAACCTAACAAATAT+TGG | - | chr1.4:65321789-65321808 | None:intergenic | 25.0% |
! | ATAGTTTATTCATCAAGACA+TGG | + | chr1.4:65321516-65321535 | MS.gene036431:CDS | 25.0% |
! | CACTTAATTACTCGTTAATA+TGG | + | chr1.4:65320605-65320624 | MS.gene036431:CDS | 25.0% |
! | CATATTAACGAGTAATTAAG+TGG | - | chr1.4:65320607-65320626 | None:intergenic | 25.0% |
! | CTGTTGGAAATAATTCAAAA+AGG | - | chr1.4:65321818-65321837 | None:intergenic | 25.0% |
! | TAAACAAGTTTGAGAAAGTT+TGG | + | chr1.4:65320383-65320402 | MS.gene036431:CDS | 25.0% |
! | TAGTTTATTCATCAAGACAT+GGG | + | chr1.4:65321517-65321536 | MS.gene036431:CDS | 25.0% |
! | TGTCTTGATGAATAAACTAT+TGG | - | chr1.4:65321516-65321535 | None:intergenic | 25.0% |
!! | ATGATGAATGTGTTTACTTT+TGG | + | chr1.4:65320641-65320660 | MS.gene036431:CDS | 25.0% |
!! | GGTATTACTGTGATTAATTT+TGG | + | chr1.4:65320030-65320049 | MS.gene036431:intron | 25.0% |
!! | TTACTGTGTTCTTTCTATTT+TGG | + | chr1.4:65319945-65319964 | MS.gene036431:intron | 25.0% |
!! | TTTCACATTTTATAGACCTT+TGG | + | chr1.4:65320438-65320457 | MS.gene036431:CDS | 25.0% |
!!! | AATATTTGTTAGGTTTTCTG+TGG | + | chr1.4:65321788-65321807 | MS.gene036431:CDS | 25.0% |
!!! | ATTCGATTTGGAGTTTATTA+AGG | + | chr1.4:65321482-65321501 | MS.gene036431:CDS | 25.0% |
!!! | GTAGTATTTTTTGCAGATAT+TGG | + | chr1.4:65320058-65320077 | MS.gene036431:intron | 25.0% |
!!! | TTTGAGTTGATGATTAAAAC+AGG | - | chr1.4:65319908-65319927 | None:intergenic | 25.0% |
!!! | TTTGATTTCGTTTTGGTTAT+TGG | + | chr1.4:65320226-65320245 | MS.gene036431:intron | 25.0% |
AACATTGAGATGAACAAGAT+CGG | + | chr1.4:65321351-65321370 | MS.gene036431:CDS | 30.0% | |
ACATGCTTCCAATATTTGTT+AGG | + | chr1.4:65321778-65321797 | MS.gene036431:CDS | 30.0% | |
AGAAAAATTCTTTCCAGGTT+TGG | + | chr1.4:65320812-65320831 | MS.gene036431:CDS | 30.0% | |
AGAACGTGAATCATATACAA+TGG | - | chr1.4:65321739-65321758 | None:intergenic | 30.0% | |
ATGCACAAATTCTAATGGAA+AGG | + | chr1.4:65320408-65320427 | MS.gene036431:CDS | 30.0% | |
CTTTACTGATATTGCAATGT+GGG | + | chr1.4:65321281-65321300 | MS.gene036431:CDS | 30.0% | |
GCGAGAAATAATCTTAAGAA+GGG | + | chr1.4:65321204-65321223 | MS.gene036431:CDS | 30.0% | |
GGTAAAGCTATAGATTATCA+CGG | + | chr1.4:65321114-65321133 | MS.gene036431:CDS | 30.0% | |
GTCAAAGAAAAATTCTTTCC+AGG | + | chr1.4:65320807-65320826 | MS.gene036431:CDS | 30.0% | |
GTTCATCAATGACACTTTAA+GGG | - | chr1.4:65321334-65321353 | None:intergenic | 30.0% | |
TGCGAGAAATAATCTTAAGA+AGG | + | chr1.4:65321203-65321222 | MS.gene036431:CDS | 30.0% | |
TGTTCATCAATGACACTTTA+AGG | - | chr1.4:65321335-65321354 | None:intergenic | 30.0% | |
! | ATTATTTCTCGCATCTTCAT+CGG | - | chr1.4:65321196-65321215 | None:intergenic | 30.0% |
!! | TGTAACTTGTATTTTCCCAA+GGG | - | chr1.4:65320359-65320378 | None:intergenic | 30.0% |
!! | TTGTAACTTGTATTTTCCCA+AGG | - | chr1.4:65320360-65320379 | None:intergenic | 30.0% |
CACTTGTTCAGAATCAAAGT+AGG | - | chr1.4:65320905-65320924 | None:intergenic | 35.0% | |
CATCGAACTTCTTCAACTTT+CGG | - | chr1.4:65320730-65320749 | None:intergenic | 35.0% | |
CCACATTGCAATATCAGTAA+AGG | - | chr1.4:65321283-65321302 | None:intergenic | 35.0% | |
CCTTTACTGATATTGCAATG+TGG | + | chr1.4:65321280-65321299 | MS.gene036431:CDS | 35.0% | |
CGTGAATCATATACAATGGT+AGG | - | chr1.4:65321735-65321754 | None:intergenic | 35.0% | |
CTACTTTGATTCTGAACAAG+TGG | + | chr1.4:65320903-65320922 | MS.gene036431:CDS | 35.0% | |
CTCACAAACTTCTGTTAGAT+CGG | - | chr1.4:65320761-65320780 | None:intergenic | 35.0% | |
CTCATATATTGCAACCAACA+TGG | - | chr1.4:65321702-65321721 | None:intergenic | 35.0% | |
GTTCATGTAAAACCAGCATT+AGG | + | chr1.4:65321252-65321271 | MS.gene036431:CDS | 35.0% | |
GTTGCAATATATGAGAGAGT+GGG | + | chr1.4:65321707-65321726 | MS.gene036431:CDS | 35.0% | |
TCAGGATGAAAATATACCGT+TGG | - | chr1.4:65321018-65321037 | None:intergenic | 35.0% | |
TGGAGATGCACAAATTCTAA+TGG | + | chr1.4:65320403-65320422 | MS.gene036431:CDS | 35.0% | |
TTACTCGTTAATATGGTGCA+TGG | + | chr1.4:65320612-65320631 | MS.gene036431:CDS | 35.0% | |
TTATTTCCAACAGAGCTTTC+TGG | + | chr1.4:65321825-65321844 | MS.gene036431:CDS | 35.0% | |
TTGCAATATATGAGAGAGTG+GGG | + | chr1.4:65321708-65321727 | MS.gene036431:CDS | 35.0% | |
! | ATGGGTTAATGCATTCGATT+TGG | + | chr1.4:65321470-65321489 | MS.gene036431:CDS | 35.0% |
! | TGGAGCAATTTTGTATACTG+CGG | + | chr1.4:65321080-65321099 | MS.gene036431:CDS | 35.0% |
!! | AATTCTAATGGAAAGGCACT+AGG | + | chr1.4:65320415-65320434 | MS.gene036431:CDS | 35.0% |
!! | AGGTTGATGATAATACCTTG+TGG | - | chr1.4:65319837-65319856 | None:intergenic | 35.0% |
!! | GATATAATGATGGTGCGTTT+TGG | + | chr1.4:65321157-65321176 | MS.gene036431:CDS | 35.0% |
!!! | TGGTTTTGAGTGTTCTTGTT+GGG | + | chr1.4:65319743-65319762 | MS.gene036431:CDS | 35.0% |
!!! | TTGGTTTTGAGTGTTCTTGT+TGG | + | chr1.4:65319742-65319761 | MS.gene036431:CDS | 35.0% |
AAAAACAGACCAAAGCTCTC+CGG | - | chr1.4:65321427-65321446 | None:intergenic | 40.0% | |
AACAAGATCGGTGAACATGT+CGG | + | chr1.4:65321363-65321382 | MS.gene036431:CDS | 40.0% | |
AAGAGGTGAAGGAAGAGAAA+AGG | - | chr1.4:65319805-65319824 | None:intergenic | 40.0% | |
AAGGTTGTGTATTCCAAACC+TGG | - | chr1.4:65320828-65320847 | None:intergenic | 40.0% | |
AATACACAACCTTGCGATAG+AGG | + | chr1.4:65320835-65320854 | MS.gene036431:CDS | 40.0% | |
AGAGGTGAAGGAAGAGAAAA+GGG | - | chr1.4:65319804-65319823 | None:intergenic | 40.0% | |
ATAATACCTTGTGGCCATTG+TGG | - | chr1.4:65319828-65319847 | None:intergenic | 40.0% | |
ATGCTCTCATTGAGCATTAC+GGG | + | chr1.4:65320992-65321011 | MS.gene036431:CDS | 40.0% | |
CATGCTCTCATTGAGCATTA+CGG | + | chr1.4:65320991-65321010 | MS.gene036431:CDS | 40.0% | |
CATGTAAAACCAGCATTAGG+AGG | + | chr1.4:65321255-65321274 | MS.gene036431:CDS | 40.0% | |
GAGTCATTACAGAACCATGT+TGG | + | chr1.4:65321685-65321704 | MS.gene036431:CDS | 40.0% | |
GCATGAATCTGGTTGAGATT+CGG | - | chr1.4:65320976-65320995 | None:intergenic | 40.0% | |
GGAACAATCAGCTTGAGATT+TGG | - | chr1.4:65320557-65320576 | None:intergenic | 40.0% | |
GGATCAGAGTCAAAGAATTC+TGG | - | chr1.4:65319777-65319796 | None:intergenic | 40.0% | |
GGATCATCCAAACTTGGAAT+AGG | + | chr1.4:65321576-65321595 | MS.gene036431:CDS | 40.0% | |
GGTTGCAATATATGAGAGAG+TGG | + | chr1.4:65321706-65321725 | MS.gene036431:CDS | 40.0% | |
TATACTGCGGGTAATGCAAA+GGG | + | chr1.4:65321093-65321112 | MS.gene036431:CDS | 40.0% | |
TATCACGGCACAAATTTACC+TGG | + | chr1.4:65321129-65321148 | MS.gene036431:CDS | 40.0% | |
TCTTCAACTTTCGGTTCATC+TGG | - | chr1.4:65320721-65320740 | None:intergenic | 40.0% | |
TGAGAAATACATGCCGTCAT+CGG | + | chr1.4:65321038-65321057 | MS.gene036431:CDS | 40.0% | |
! | AATCCATCTGGAATCTCCAA+AGG | - | chr1.4:65320457-65320476 | None:intergenic | 40.0% |
! | AATGACACTTTAAGGGTTGC+AGG | - | chr1.4:65321327-65321346 | None:intergenic | 40.0% |
! | GGAGCAATTTTGTATACTGC+GGG | + | chr1.4:65321081-65321100 | MS.gene036431:CDS | 40.0% |
! | TTATAACCCTTTGGAGGGTT+AGG | - | chr1.4:65320670-65320689 | None:intergenic | 40.0% |
!! | AAGTGGCTTTTTAAGAGCCA+AGG | - | chr1.4:65320590-65320609 | None:intergenic | 40.0% |
!!! | GTGTCGTGGTTTTTCAAGAA+TGG | + | chr1.4:65321060-65321079 | MS.gene036431:CDS | 40.0% |
!!! | GTTTTTTTCTCTGAGCACAG+TGG | + | chr1.4:65321441-65321460 | MS.gene036431:CDS | 40.0% |
!!! | TGGGTTTTTTGCCCATTCAA+TGG | + | chr1.4:65321300-65321319 | MS.gene036431:CDS | 40.0% |
AAAAACCACGACACCGATGA+CGG | - | chr1.4:65321054-65321073 | None:intergenic | 45.0% | |
AACTTTCGGTTCATCTGGAC+TGG | - | chr1.4:65320716-65320735 | None:intergenic | 45.0% | |
AAGAGCCAAGGATTCTGACT+CGG | - | chr1.4:65320578-65320597 | None:intergenic | 45.0% | |
AAGGAGAAGGACAATTGGCT+AGG | + | chr1.4:65321870-65321889 | MS.gene036431:CDS | 45.0% | |
AGCCAATTGTCCTTCTCCTT+TGG | - | chr1.4:65321870-65321889 | None:intergenic | 45.0% | |
AGCTTGTGAGTGATCTACTC+AGG | + | chr1.4:65320307-65320326 | MS.gene036431:intron | 45.0% | |
ATGCTAGCTATCCTCATGCA+GGG | + | chr1.4:65321541-65321560 | MS.gene036431:CDS | 45.0% | |
ATTGTTGCTGCCGAGTATCT+TGG | + | chr1.4:65321657-65321676 | MS.gene036431:CDS | 45.0% | |
CAAGTTTGGATGATCCCTGA+AGG | - | chr1.4:65321572-65321591 | None:intergenic | 45.0% | |
CCAAAGGGTTATAAAGCCGT+CGG | + | chr1.4:65320676-65320695 | MS.gene036431:CDS | 45.0% | |
CCAAGACAGGAAAATCCATC+TGG | - | chr1.4:65320469-65320488 | None:intergenic | 45.0% | |
CCATCATTATATCCTCCACC+AGG | - | chr1.4:65321150-65321169 | None:intergenic | 45.0% | |
CCTGGTGGAGGATATAATGA+TGG | + | chr1.4:65321147-65321166 | MS.gene036431:CDS | 45.0% | |
CTTCAGGGATCATCCAAACT+TGG | + | chr1.4:65321570-65321589 | MS.gene036431:CDS | 45.0% | |
GAAGGAAGAGAAAAGGGAAG+TGG | - | chr1.4:65319798-65319817 | None:intergenic | 45.0% | |
GAAGGGAAACATAGAGAGTG+CGG | + | chr1.4:65321221-65321240 | MS.gene036431:CDS | 45.0% | |
GACGGCATGTATTTCTCATC+AGG | - | chr1.4:65321036-65321055 | None:intergenic | 45.0% | |
GACTCCATCACCAAGATACT+CGG | - | chr1.4:65321670-65321689 | None:intergenic | 45.0% | |
GCGAACTCCTATTCCAAGTT+TGG | - | chr1.4:65321586-65321605 | None:intergenic | 45.0% | |
GTATACTGCGGGTAATGCAA+AGG | + | chr1.4:65321092-65321111 | MS.gene036431:CDS | 45.0% | |
GTCCAAAGGAGAAGGACAAT+TGG | + | chr1.4:65321865-65321884 | MS.gene036431:CDS | 45.0% | |
TCTGTCGGAACATTCTTCTG+TGG | + | chr1.4:65320877-65320896 | MS.gene036431:CDS | 45.0% | |
TGAGCACAGTGGAGGTAAAT+GGG | + | chr1.4:65321452-65321471 | MS.gene036431:CDS | 45.0% | |
TTCCTTCACCTCTTCCACAA+TGG | + | chr1.4:65319811-65319830 | MS.gene036431:CDS | 45.0% | |
TTGTGAGTGATCTACTCAGG+TGG | + | chr1.4:65320310-65320329 | MS.gene036431:intron | 45.0% | |
TTGTTCCGAGTCAGAATCCT+TGG | + | chr1.4:65320570-65320589 | MS.gene036431:CDS | 45.0% | |
TTTCTCGCATCTTCATCGGT+AGG | - | chr1.4:65321192-65321211 | None:intergenic | 45.0% | |
! | ACGGCTTTATAACCCTTTGG+AGG | - | chr1.4:65320676-65320695 | None:intergenic | 45.0% |
! | AGACCTTTGGAGATTCCAGA+TGG | + | chr1.4:65320451-65320470 | MS.gene036431:CDS | 45.0% |
! | CGGCTTTATAACCCTTTGGA+GGG | - | chr1.4:65320675-65320694 | None:intergenic | 45.0% |
! | CTAGCTAGAGGTGTATCTGT+CGG | + | chr1.4:65320862-65320881 | MS.gene036431:CDS | 45.0% |
! | GATAGAGGTATGCTAGCTAG+AGG | + | chr1.4:65320850-65320869 | MS.gene036431:CDS | 45.0% |
! | GCTCAATGAGAGCATGAATC+TGG | - | chr1.4:65320987-65321006 | None:intergenic | 45.0% |
! | TTTTTCTCTGAGCACAGTGG+AGG | + | chr1.4:65321444-65321463 | MS.gene036431:CDS | 45.0% |
!! | CCAGATGGATTTTCCTGTCT+TGG | + | chr1.4:65320466-65320485 | MS.gene036431:CDS | 45.0% |
ACAAGAACGTGTCCTCGCAA+CGG | - | chr1.4:65320517-65320536 | None:intergenic | 50.0% | |
AGGGTTGCAGGTCCATTGAA+TGG | - | chr1.4:65321315-65321334 | None:intergenic | 50.0% | |
CACGGCACAAATTTACCTGG+TGG | + | chr1.4:65321132-65321151 | MS.gene036431:CDS | 50.0% | |
CATGCAGGGACTTACCTTCA+GGG | + | chr1.4:65321555-65321574 | MS.gene036431:CDS | 50.0% | |
CATGCTAGCTATCCTCATGC+AGG | + | chr1.4:65321540-65321559 | MS.gene036431:CDS | 50.0% | |
CATTGAGCATTACGGGCCAA+CGG | + | chr1.4:65320999-65321018 | MS.gene036431:CDS | 50.0% | |
CCCAAGGGATATTCTTCCAC+CGG | - | chr1.4:65320344-65320363 | None:intergenic | 50.0% | |
CCGGTGGAAGAATATCCCTT+GGG | + | chr1.4:65320341-65320360 | MS.gene036431:CDS | 50.0% | |
CGGTGAACATGTCGGTGATT+GGG | + | chr1.4:65321371-65321390 | MS.gene036431:CDS | 50.0% | |
CTGAGCACAGTGGAGGTAAA+TGG | + | chr1.4:65321451-65321470 | MS.gene036431:CDS | 50.0% | |
GCTAGCATACCTCTATCGCA+AGG | - | chr1.4:65320847-65320866 | None:intergenic | 50.0% | |
GGCACAAATTTACCTGGTGG+AGG | + | chr1.4:65321135-65321154 | MS.gene036431:CDS | 50.0% | |
GGGTTGCAGGTCCATTGAAT+GGG | - | chr1.4:65321314-65321333 | None:intergenic | 50.0% | |
GGTGGTAACTACTATGCCGA+CGG | - | chr1.4:65320695-65320714 | None:intergenic | 50.0% | |
GTAAAGGCTCCTCCTAATGC+TGG | - | chr1.4:65321267-65321286 | None:intergenic | 50.0% | |
GTGGCAGTAGTAACCAAGAC+AGG | - | chr1.4:65320482-65320501 | None:intergenic | 50.0% | |
TCATGCAGGGACTTACCTTC+AGG | + | chr1.4:65321554-65321573 | MS.gene036431:CDS | 50.0% | |
TCCTCACCAGAAAGCTCTGT+TGG | - | chr1.4:65321834-65321853 | None:intergenic | 50.0% | |
TCCTTCTCCTTTGGACCAGT+TGG | - | chr1.4:65321861-65321880 | None:intergenic | 50.0% | |
TCGGTGAACATGTCGGTGAT+TGG | + | chr1.4:65321370-65321389 | MS.gene036431:CDS | 50.0% | |
TGAAGGTAAGTCCCTGCATG+AGG | - | chr1.4:65321555-65321574 | None:intergenic | 50.0% | |
TGAGTGATCTACTCAGGTGG+TGG | + | chr1.4:65320313-65320332 | MS.gene036431:intron | 50.0% | |
TGGTTGCCTAACCCTCCAAA+GGG | + | chr1.4:65320661-65320680 | MS.gene036431:CDS | 50.0% | |
TTGGTTGCCTAACCCTCCAA+AGG | + | chr1.4:65320660-65320679 | MS.gene036431:CDS | 50.0% | |
! | AACAGAGCTTTCTGGTGAGG+AGG | + | chr1.4:65321833-65321852 | MS.gene036431:CDS | 50.0% |
! | ACAGAGCTTTCTGGTGAGGA+GGG | + | chr1.4:65321834-65321853 | MS.gene036431:CDS | 50.0% |
! | CCGACGGCTTTATAACCCTT+TGG | - | chr1.4:65320679-65320698 | None:intergenic | 50.0% |
! | TCCAACAGAGCTTTCTGGTG+AGG | + | chr1.4:65321830-65321849 | MS.gene036431:CDS | 50.0% |
! | TTTCGGTTCATCTGGACTGG+TGG | - | chr1.4:65320713-65320732 | None:intergenic | 50.0% |
!! | TACTCAGGTGGTGGTTTTGC+CGG | + | chr1.4:65320322-65320341 | MS.gene036431:intron | 50.0% |
AGGACACGTTCTTGTCGCTC+GGG | + | chr1.4:65320522-65320541 | MS.gene036431:CDS | 55.0% | |
CCTCTTCCACAATGGCCACA+AGG | + | chr1.4:65319819-65319838 | MS.gene036431:CDS | 55.0% | |
CCTTGTGGCCATTGTGGAAG+AGG | - | chr1.4:65319822-65319841 | None:intergenic | 55.0% | |
CTTCGCGTGAGCAACTTCAC+CGG | + | chr1.4:65321405-65321424 | MS.gene036431:CDS | 55.0% | |
GAGGACACGTTCTTGTCGCT+CGG | + | chr1.4:65320521-65320540 | MS.gene036431:CDS | 55.0% | |
GCAACGGCTGATCATTGGAG+TGG | - | chr1.4:65320501-65320520 | None:intergenic | 55.0% | |
GCAACTTCACCGGAGAGCTT+TGG | + | chr1.4:65321415-65321434 | MS.gene036431:CDS | 55.0% | |
GCCAACTGGTCCAAAGGAGA+AGG | + | chr1.4:65321857-65321876 | MS.gene036431:CDS | 55.0% | |
GCCGGTGGAAGAATATCCCT+TGG | + | chr1.4:65320340-65320359 | MS.gene036431:CDS | 55.0% | |
GCTGCCGAGTATCTTGGTGA+TGG | + | chr1.4:65321663-65321682 | MS.gene036431:CDS | 55.0% | |
GGCCATTGTGGAAGAGGTGA+AGG | - | chr1.4:65319816-65319835 | None:intergenic | 55.0% | |
GGTGAAGTTGCTCACGCGAA+GGG | - | chr1.4:65321406-65321425 | None:intergenic | 55.0% | |
TCCAATGATCAGCCGTTGCG+AGG | + | chr1.4:65320502-65320521 | MS.gene036431:CDS | 55.0% | |
TCCTCGCAACGGCTGATCAT+TGG | - | chr1.4:65320506-65320525 | None:intergenic | 55.0% | |
! | CAGAGCTTTCTGGTGAGGAG+GGG | + | chr1.4:65321835-65321854 | MS.gene036431:CDS | 55.0% |
CGGTGAAGTTGCTCACGCGA+AGG | - | chr1.4:65321407-65321426 | None:intergenic | 60.0% | |
!! | ACATGCCGTCATCGGTGTCG+TGG | + | chr1.4:65321046-65321065 | MS.gene036431:CDS | 60.0% |
!! | TCAGGTGGTGGTTTTGCCGG+TGG | + | chr1.4:65320325-65320344 | MS.gene036431:intron | 60.0% |
GGAGGGGCCAACTGGTCCAA+AGG | + | chr1.4:65321851-65321870 | MS.gene036431:CDS | 65.0% | |
TCTGGTGAGGAGGGGCCAAC+TGG | + | chr1.4:65321843-65321862 | MS.gene036431:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.4 | gene | 65319738 | 65321908 | 65319738 | ID=MS.gene036431 |
chr1.4 | mRNA | 65319738 | 65321908 | 65319738 | ID=MS.gene036431.t1;Parent=MS.gene036431 |
chr1.4 | exon | 65319738 | 65319840 | 65319738 | ID=MS.gene036431.t1.exon1;Parent=MS.gene036431.t1 |
chr1.4 | CDS | 65319738 | 65319840 | 65319738 | ID=cds.MS.gene036431.t1;Parent=MS.gene036431.t1 |
chr1.4 | exon | 65320329 | 65321908 | 65320329 | ID=MS.gene036431.t1.exon2;Parent=MS.gene036431.t1 |
chr1.4 | CDS | 65320329 | 65321908 | 65320329 | ID=cds.MS.gene036431.t1;Parent=MS.gene036431.t1 |
Gene Sequence |
Protein sequence |