AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene036431


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene036431.t1 MTR_1g080370 98.393 560 9 0 1 560 1 560 0.0 1147
MS.gene036431.t1 MTR_1g080410 98.393 560 9 0 1 560 1 560 0.0 1147
MS.gene036431.t1 MTR_5g007860 55.729 576 226 7 5 558 37 605 0.0 666
MS.gene036431.t1 MTR_4g077620 55.185 569 240 8 1 558 3 567 0.0 652
MS.gene036431.t1 MTR_2g062430 47.434 565 265 12 6 558 8 552 1.57e-176 510
MS.gene036431.t1 MTR_2g067640 45.652 552 263 10 20 558 13 540 1.55e-171 497
MS.gene036431.t1 MTR_2g062410 46.196 552 270 10 18 558 50 585 8.47e-170 494
MS.gene036431.t1 MTR_2g062370 45.355 549 271 9 23 558 57 589 6.32e-163 476
MS.gene036431.t1 MTR_4g131710 44.828 551 273 10 23 558 51 585 3.36e-162 474
MS.gene036431.t1 MTR_2g062380 45.996 537 260 9 35 558 40 559 6.06e-157 460
MS.gene036431.t1 MTR_2g062340 44.872 546 242 9 23 558 20 516 6.52e-153 448
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene036431.t1 AT3G04350 64.510 572 186 7 1 560 1 567 0.0 759
MS.gene036431.t1 AT5G18490 64.825 543 174 7 22 560 24 553 0.0 736
MS.gene036431.t1 AT3G04350 65.421 535 171 6 35 560 16 545 0.0 726
MS.gene036431.t1 AT1G04090 54.073 577 243 9 1 560 1 572 0.0 654
MS.gene036431.t1 AT5G43950 53.752 573 241 9 1 558 1 564 0.0 631
MS.gene036431.t1 AT2G44260 45.772 544 267 9 23 558 29 552 1.00e-169 493
MS.gene036431.t1 AT2G44230 45.704 547 261 10 23 558 20 541 2.58e-169 491
MS.gene036431.t1 AT2G44260 45.677 532 261 9 35 558 71 582 2.29e-164 480
MS.gene036431.t1 AT3G01870 41.593 565 290 13 11 558 42 583 1.83e-141 421
MS.gene036431.t1 AT3G01880 41.103 562 291 13 15 558 50 589 2.47e-139 416

Find 139 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTCATCAATGACACTTTA+AGG 0.107306 1.4:-65321332 None:intergenic
TAAACAAGTTTGAGAAAGTT+TGG 0.235719 1.4:+65320383 MS.gene036431:CDS
CTGAGCACAGTGGAGGTAAA+TGG 0.247800 1.4:+65321451 MS.gene036431:CDS
TTATTTCCAACAGAGCTTTC+TGG 0.254169 1.4:+65321825 MS.gene036431:CDS
CACTTAATTACTCGTTAATA+TGG 0.260129 1.4:+65320605 MS.gene036431:CDS
ATTCGATTTGGAGTTTATTA+AGG 0.263278 1.4:+65321482 MS.gene036431:CDS
AGCCAATTGTCCTTCTCCTT+TGG 0.307063 1.4:-65321867 None:intergenic
GCGAACTCCTATTCCAAGTT+TGG 0.314359 1.4:-65321583 None:intergenic
TGTCTTGATGAATAAACTAT+TGG 0.322222 1.4:-65321513 None:intergenic
ACAGAAAACCTAACAAATAT+TGG 0.329471 1.4:-65321786 None:intergenic
GATATAATGATGGTGCGTTT+TGG 0.329648 1.4:+65321157 MS.gene036431:CDS
CATCGAACTTCTTCAACTTT+CGG 0.340671 1.4:-65320727 None:intergenic
ATGGGTTAATGCATTCGATT+TGG 0.345620 1.4:+65321470 MS.gene036431:CDS
ATGATGAATGTGTTTACTTT+TGG 0.348745 1.4:+65320641 MS.gene036431:CDS
TCCTTCTCCTTTGGACCAGT+TGG 0.349557 1.4:-65321858 None:intergenic
ACATGCTTCCAATATTTGTT+AGG 0.353415 1.4:+65321778 MS.gene036431:CDS
TCTTCAACTTTCGGTTCATC+TGG 0.355411 1.4:-65320718 None:intergenic
AATGACACTTTAAGGGTTGC+AGG 0.360391 1.4:-65321324 None:intergenic
CATGCTCTCATTGAGCATTA+CGG 0.360621 1.4:+65320991 MS.gene036431:CDS
GGAACAATCAGCTTGAGATT+TGG 0.364813 1.4:-65320554 None:intergenic
GTTCATCAATGACACTTTAA+GGG 0.377575 1.4:-65321331 None:intergenic
GGATCAGAGTCAAAGAATTC+TGG 0.378539 1.4:-65319774 None:intergenic
TCTGGTGAGGAGGGGCCAAC+TGG 0.379305 1.4:+65321843 MS.gene036431:CDS
ATGCTCTCATTGAGCATTAC+GGG 0.380356 1.4:+65320992 MS.gene036431:CDS
TGGAGATGCACAAATTCTAA+TGG 0.385168 1.4:+65320403 MS.gene036431:CDS
CTGTTGGAAATAATTCAAAA+AGG 0.390774 1.4:-65321815 None:intergenic
AGAGGTGAAGGAAGAGAAAA+GGG 0.395917 1.4:-65319801 None:intergenic
AAGAGGTGAAGGAAGAGAAA+AGG 0.400057 1.4:-65319802 None:intergenic
TCATGCAGGGACTTACCTTC+AGG 0.415789 1.4:+65321554 MS.gene036431:CDS
TGTGGTTGGTAAGAGATGTT+TGG 0.416589 1.4:+65319723 None:intergenic
AACTTTCGGTTCATCTGGAC+TGG 0.420215 1.4:-65320713 None:intergenic
AGGGTTGCAGGTCCATTGAA+TGG 0.426014 1.4:-65321312 None:intergenic
TCCTCGCAACGGCTGATCAT+TGG 0.426252 1.4:-65320503 None:intergenic
GTTCATGTAAAACCAGCATT+AGG 0.426763 1.4:+65321252 MS.gene036431:CDS
CCGACGGCTTTATAACCCTT+TGG 0.428360 1.4:-65320676 None:intergenic
CTTCAGGGATCATCCAAACT+TGG 0.432488 1.4:+65321570 MS.gene036431:CDS
CGGTGAACATGTCGGTGATT+GGG 0.432674 1.4:+65321371 MS.gene036431:CDS
TCGGTGAACATGTCGGTGAT+TGG 0.434338 1.4:+65321370 MS.gene036431:CDS
CATATTAACGAGTAATTAAG+TGG 0.438102 1.4:-65320604 None:intergenic
GCAACTTCACCGGAGAGCTT+TGG 0.443367 1.4:+65321415 MS.gene036431:CDS
TTATAACCCTTTGGAGGGTT+AGG 0.448233 1.4:-65320667 None:intergenic
GGATCATCCAAACTTGGAAT+AGG 0.450282 1.4:+65321576 MS.gene036431:CDS
GACGGCATGTATTTCTCATC+AGG 0.451359 1.4:-65321033 None:intergenic
CCCAAGGGATATTCTTCCAC+CGG 0.460403 1.4:-65320341 None:intergenic
TCCTCACCAGAAAGCTCTGT+TGG 0.461764 1.4:-65321831 None:intergenic
GCATGAATCTGGTTGAGATT+CGG 0.468325 1.4:-65320973 None:intergenic
AATACACAACCTTGCGATAG+AGG 0.468770 1.4:+65320835 MS.gene036431:CDS
CCAAGACAGGAAAATCCATC+TGG 0.469039 1.4:-65320466 None:intergenic
GAGGACACGTTCTTGTCGCT+CGG 0.471944 1.4:+65320521 MS.gene036431:CDS
TGAGCACAGTGGAGGTAAAT+GGG 0.475593 1.4:+65321452 MS.gene036431:CDS
CTTTACTGATATTGCAATGT+GGG 0.475927 1.4:+65321281 MS.gene036431:CDS
GAAGGAAGAGAAAAGGGAAG+TGG 0.478043 1.4:-65319795 None:intergenic
TGCGAGAAATAATCTTAAGA+AGG 0.480833 1.4:+65321203 MS.gene036431:CDS
ACGGCTTTATAACCCTTTGG+AGG 0.486012 1.4:-65320673 None:intergenic
ATTGTTGCTGCCGAGTATCT+TGG 0.490221 1.4:+65321657 MS.gene036431:CDS
GCTCAATGAGAGCATGAATC+TGG 0.490735 1.4:-65320984 None:intergenic
GTCCAAAGGAGAAGGACAAT+TGG 0.490950 1.4:+65321865 MS.gene036431:CDS
CTCACAAACTTCTGTTAGAT+CGG 0.493970 1.4:-65320758 None:intergenic
GGGTTGCAGGTCCATTGAAT+GGG 0.500640 1.4:-65321311 None:intergenic
GCCGGTGGAAGAATATCCCT+TGG 0.503378 1.4:+65320340 MS.gene036431:CDS
CTACTTTGATTCTGAACAAG+TGG 0.505519 1.4:+65320903 MS.gene036431:CDS
CGGTGAAGTTGCTCACGCGA+AGG 0.508371 1.4:-65321404 None:intergenic
TTGTTCCGAGTCAGAATCCT+TGG 0.510563 1.4:+65320570 MS.gene036431:CDS
CATGCTAGCTATCCTCATGC+AGG 0.510869 1.4:+65321540 MS.gene036431:CDS
CCTTGTGGCCATTGTGGAAG+AGG 0.512962 1.4:-65319819 None:intergenic
CCACATTGCAATATCAGTAA+AGG 0.513990 1.4:-65321280 None:intergenic
TTGGTTGCCTAACCCTCCAA+AGG 0.523651 1.4:+65320660 MS.gene036431:CDS
AATTCTAATGGAAAGGCACT+AGG 0.529623 1.4:+65320415 MS.gene036431:CDS
CATGCAGGGACTTACCTTCA+GGG 0.530671 1.4:+65321555 MS.gene036431:CDS
AACAGAGCTTTCTGGTGAGG+AGG 0.540070 1.4:+65321833 MS.gene036431:CDS
GTATACTGCGGGTAATGCAA+AGG 0.543009 1.4:+65321092 MS.gene036431:CDS
ACAGAGCTTTCTGGTGAGGA+GGG 0.543440 1.4:+65321834 MS.gene036431:CDS
GTAAAGGCTCCTCCTAATGC+TGG 0.544725 1.4:-65321264 None:intergenic
AGGACACGTTCTTGTCGCTC+GGG 0.549143 1.4:+65320522 MS.gene036431:CDS
CCGGTGGAAGAATATCCCTT+GGG 0.549609 1.4:+65320341 MS.gene036431:CDS
AGACCTTTGGAGATTCCAGA+TGG 0.551683 1.4:+65320451 MS.gene036431:CDS
TTCCTTCACCTCTTCCACAA+TGG 0.552183 1.4:+65319811 MS.gene036431:CDS
GACTCCATCACCAAGATACT+CGG 0.556847 1.4:-65321667 None:intergenic
TTACTCGTTAATATGGTGCA+TGG 0.557123 1.4:+65320612 MS.gene036431:CDS
CGGCTTTATAACCCTTTGGA+GGG 0.557691 1.4:-65320672 None:intergenic
GGTGAAGTTGCTCACGCGAA+GGG 0.560176 1.4:-65321403 None:intergenic
ATTATTTCTCGCATCTTCAT+CGG 0.561997 1.4:-65321193 None:intergenic
ACATGCCGTCATCGGTGTCG+TGG 0.562228 1.4:+65321046 MS.gene036431:CDS
CGTGAATCATATACAATGGT+AGG 0.564534 1.4:-65321732 None:intergenic
TCCAACAGAGCTTTCTGGTG+AGG 0.565118 1.4:+65321830 MS.gene036431:CDS
GCGAGAAATAATCTTAAGAA+GGG 0.567421 1.4:+65321204 MS.gene036431:CDS
TTTCTCGCATCTTCATCGGT+AGG 0.570074 1.4:-65321189 None:intergenic
ATGCACAAATTCTAATGGAA+AGG 0.570132 1.4:+65320408 MS.gene036431:CDS
TATACTGCGGGTAATGCAAA+GGG 0.571900 1.4:+65321093 MS.gene036431:CDS
CATGTAAAACCAGCATTAGG+AGG 0.572269 1.4:+65321255 MS.gene036431:CDS
AACATTGAGATGAACAAGAT+CGG 0.572272 1.4:+65321351 MS.gene036431:CDS
TGGTTGCCTAACCCTCCAAA+GGG 0.582899 1.4:+65320661 MS.gene036431:CDS
CTTCGCGTGAGCAACTTCAC+CGG 0.582952 1.4:+65321405 MS.gene036431:CDS
TGAGAAATACATGCCGTCAT+CGG 0.585107 1.4:+65321038 MS.gene036431:CDS
TCCAATGATCAGCCGTTGCG+AGG 0.585934 1.4:+65320502 MS.gene036431:CDS
GCCAACTGGTCCAAAGGAGA+AGG 0.588714 1.4:+65321857 MS.gene036431:CDS
GTGGCAGTAGTAACCAAGAC+AGG 0.592567 1.4:-65320479 None:intergenic
AAGGTTGTGTATTCCAAACC+TGG 0.594362 1.4:-65320825 None:intergenic
AATCCATCTGGAATCTCCAA+AGG 0.594832 1.4:-65320454 None:intergenic
CTCATATATTGCAACCAACA+TGG 0.598495 1.4:-65321699 None:intergenic
AAGAGCCAAGGATTCTGACT+CGG 0.598761 1.4:-65320575 None:intergenic
CCTCTTCCACAATGGCCACA+AGG 0.602749 1.4:+65319819 MS.gene036431:CDS
GGCACAAATTTACCTGGTGG+AGG 0.603301 1.4:+65321135 MS.gene036431:CDS
GGTTGCAATATATGAGAGAG+TGG 0.604682 1.4:+65321706 MS.gene036431:CDS
CATTGAGCATTACGGGCCAA+CGG 0.604760 1.4:+65320999 MS.gene036431:CDS
CTAGCTAGAGGTGTATCTGT+CGG 0.607900 1.4:+65320862 MS.gene036431:CDS
GGTGGTAACTACTATGCCGA+CGG 0.610312 1.4:-65320692 None:intergenic
TATCACGGCACAAATTTACC+TGG 0.610377 1.4:+65321129 MS.gene036431:CDS
AAGGAGAAGGACAATTGGCT+AGG 0.611868 1.4:+65321870 MS.gene036431:CDS
TAGTTTATTCATCAAGACAT+GGG 0.614112 1.4:+65321517 MS.gene036431:CDS
CCAAAGGGTTATAAAGCCGT+CGG 0.615266 1.4:+65320676 MS.gene036431:CDS
GGAGGGGCCAACTGGTCCAA+AGG 0.615580 1.4:+65321851 MS.gene036431:CDS
CCTGGTGGAGGATATAATGA+TGG 0.615594 1.4:+65321147 MS.gene036431:CDS
TCAGGATGAAAATATACCGT+TGG 0.617396 1.4:-65321015 None:intergenic
CAAGTTTGGATGATCCCTGA+AGG 0.618933 1.4:-65321569 None:intergenic
GGTAAAGCTATAGATTATCA+CGG 0.619614 1.4:+65321114 MS.gene036431:CDS
TTTCGGTTCATCTGGACTGG+TGG 0.621856 1.4:-65320710 None:intergenic
CCTTTACTGATATTGCAATG+TGG 0.624376 1.4:+65321280 MS.gene036431:CDS
CACGGCACAAATTTACCTGG+TGG 0.625316 1.4:+65321132 MS.gene036431:CDS
ATAATACCTTGTGGCCATTG+TGG 0.625787 1.4:-65319825 None:intergenic
CCATCATTATATCCTCCACC+AGG 0.627153 1.4:-65321147 None:intergenic
GTTGCAATATATGAGAGAGT+GGG 0.627285 1.4:+65321707 MS.gene036431:CDS
GGCCATTGTGGAAGAGGTGA+AGG 0.627997 1.4:-65319813 None:intergenic
GCTGCCGAGTATCTTGGTGA+TGG 0.635810 1.4:+65321663 MS.gene036431:CDS
GAAGGGAAACATAGAGAGTG+CGG 0.636222 1.4:+65321221 MS.gene036431:CDS
TGAAGGTAAGTCCCTGCATG+AGG 0.636865 1.4:-65321552 None:intergenic
ATAGTTTATTCATCAAGACA+TGG 0.637290 1.4:+65321516 MS.gene036431:CDS
ACAAGAACGTGTCCTCGCAA+CGG 0.637737 1.4:-65320514 None:intergenic
TCTGTCGGAACATTCTTCTG+TGG 0.649136 1.4:+65320877 MS.gene036431:CDS
AACAAGATCGGTGAACATGT+CGG 0.653405 1.4:+65321363 MS.gene036431:CDS
CACTTGTTCAGAATCAAAGT+AGG 0.653816 1.4:-65320902 None:intergenic
AGAACGTGAATCATATACAA+TGG 0.654517 1.4:-65321736 None:intergenic
GCTAGCATACCTCTATCGCA+AGG 0.655324 1.4:-65320844 None:intergenic
ATGCTAGCTATCCTCATGCA+GGG 0.655682 1.4:+65321541 MS.gene036431:CDS
CAGAGCTTTCTGGTGAGGAG+GGG 0.657357 1.4:+65321835 MS.gene036431:CDS
GCAACGGCTGATCATTGGAG+TGG 0.664542 1.4:-65320498 None:intergenic
GAGTCATTACAGAACCATGT+TGG 0.666649 1.4:+65321685 MS.gene036431:CDS
TTGCAATATATGAGAGAGTG+GGG 0.676061 1.4:+65321708 MS.gene036431:CDS
GATAGAGGTATGCTAGCTAG+AGG 0.685865 1.4:+65320850 MS.gene036431:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAAAAAAATAATAGAAAA+AGG - chr1.4:65319862-65319881 None:intergenic 10.0%
!! AGAAAAAAATAATAGAAAAA+GGG - chr1.4:65319861-65319880 None:intergenic 10.0%
!! AAAAATAATAGAAAAAGGGA+AGG - chr1.4:65319857-65319876 None:intergenic 20.0%
!!! AATACTATTTGATTTCGTTT+TGG + chr1.4:65320219-65320238 MS.gene036431:intron 20.0%
!!! ATATTTGTGCTGTTTTTTAT+TGG + chr1.4:65320009-65320028 MS.gene036431:intron 20.0%
!!! TGCTAAAAGTAATTTTATTC+TGG + chr1.4:65321614-65321633 MS.gene036431:CDS 20.0%
! ACAGAAAACCTAACAAATAT+TGG - chr1.4:65321789-65321808 None:intergenic 25.0%
! ATAGTTTATTCATCAAGACA+TGG + chr1.4:65321516-65321535 MS.gene036431:CDS 25.0%
! CACTTAATTACTCGTTAATA+TGG + chr1.4:65320605-65320624 MS.gene036431:CDS 25.0%
! CATATTAACGAGTAATTAAG+TGG - chr1.4:65320607-65320626 None:intergenic 25.0%
! CTGTTGGAAATAATTCAAAA+AGG - chr1.4:65321818-65321837 None:intergenic 25.0%
! TAAACAAGTTTGAGAAAGTT+TGG + chr1.4:65320383-65320402 MS.gene036431:CDS 25.0%
! TAGTTTATTCATCAAGACAT+GGG + chr1.4:65321517-65321536 MS.gene036431:CDS 25.0%
! TGTCTTGATGAATAAACTAT+TGG - chr1.4:65321516-65321535 None:intergenic 25.0%
!! ATGATGAATGTGTTTACTTT+TGG + chr1.4:65320641-65320660 MS.gene036431:CDS 25.0%
!! GGTATTACTGTGATTAATTT+TGG + chr1.4:65320030-65320049 MS.gene036431:intron 25.0%
!! TTACTGTGTTCTTTCTATTT+TGG + chr1.4:65319945-65319964 MS.gene036431:intron 25.0%
!! TTTCACATTTTATAGACCTT+TGG + chr1.4:65320438-65320457 MS.gene036431:CDS 25.0%
!!! AATATTTGTTAGGTTTTCTG+TGG + chr1.4:65321788-65321807 MS.gene036431:CDS 25.0%
!!! ATTCGATTTGGAGTTTATTA+AGG + chr1.4:65321482-65321501 MS.gene036431:CDS 25.0%
!!! GTAGTATTTTTTGCAGATAT+TGG + chr1.4:65320058-65320077 MS.gene036431:intron 25.0%
!!! TTTGAGTTGATGATTAAAAC+AGG - chr1.4:65319908-65319927 None:intergenic 25.0%
!!! TTTGATTTCGTTTTGGTTAT+TGG + chr1.4:65320226-65320245 MS.gene036431:intron 25.0%
AACATTGAGATGAACAAGAT+CGG + chr1.4:65321351-65321370 MS.gene036431:CDS 30.0%
ACATGCTTCCAATATTTGTT+AGG + chr1.4:65321778-65321797 MS.gene036431:CDS 30.0%
AGAAAAATTCTTTCCAGGTT+TGG + chr1.4:65320812-65320831 MS.gene036431:CDS 30.0%
AGAACGTGAATCATATACAA+TGG - chr1.4:65321739-65321758 None:intergenic 30.0%
ATGCACAAATTCTAATGGAA+AGG + chr1.4:65320408-65320427 MS.gene036431:CDS 30.0%
CTTTACTGATATTGCAATGT+GGG + chr1.4:65321281-65321300 MS.gene036431:CDS 30.0%
GCGAGAAATAATCTTAAGAA+GGG + chr1.4:65321204-65321223 MS.gene036431:CDS 30.0%
GGTAAAGCTATAGATTATCA+CGG + chr1.4:65321114-65321133 MS.gene036431:CDS 30.0%
GTCAAAGAAAAATTCTTTCC+AGG + chr1.4:65320807-65320826 MS.gene036431:CDS 30.0%
GTTCATCAATGACACTTTAA+GGG - chr1.4:65321334-65321353 None:intergenic 30.0%
TGCGAGAAATAATCTTAAGA+AGG + chr1.4:65321203-65321222 MS.gene036431:CDS 30.0%
TGTTCATCAATGACACTTTA+AGG - chr1.4:65321335-65321354 None:intergenic 30.0%
! ATTATTTCTCGCATCTTCAT+CGG - chr1.4:65321196-65321215 None:intergenic 30.0%
!! TGTAACTTGTATTTTCCCAA+GGG - chr1.4:65320359-65320378 None:intergenic 30.0%
!! TTGTAACTTGTATTTTCCCA+AGG - chr1.4:65320360-65320379 None:intergenic 30.0%
CACTTGTTCAGAATCAAAGT+AGG - chr1.4:65320905-65320924 None:intergenic 35.0%
CATCGAACTTCTTCAACTTT+CGG - chr1.4:65320730-65320749 None:intergenic 35.0%
CCACATTGCAATATCAGTAA+AGG - chr1.4:65321283-65321302 None:intergenic 35.0%
CCTTTACTGATATTGCAATG+TGG + chr1.4:65321280-65321299 MS.gene036431:CDS 35.0%
CGTGAATCATATACAATGGT+AGG - chr1.4:65321735-65321754 None:intergenic 35.0%
CTACTTTGATTCTGAACAAG+TGG + chr1.4:65320903-65320922 MS.gene036431:CDS 35.0%
CTCACAAACTTCTGTTAGAT+CGG - chr1.4:65320761-65320780 None:intergenic 35.0%
CTCATATATTGCAACCAACA+TGG - chr1.4:65321702-65321721 None:intergenic 35.0%
GTTCATGTAAAACCAGCATT+AGG + chr1.4:65321252-65321271 MS.gene036431:CDS 35.0%
GTTGCAATATATGAGAGAGT+GGG + chr1.4:65321707-65321726 MS.gene036431:CDS 35.0%
TCAGGATGAAAATATACCGT+TGG - chr1.4:65321018-65321037 None:intergenic 35.0%
TGGAGATGCACAAATTCTAA+TGG + chr1.4:65320403-65320422 MS.gene036431:CDS 35.0%
TTACTCGTTAATATGGTGCA+TGG + chr1.4:65320612-65320631 MS.gene036431:CDS 35.0%
TTATTTCCAACAGAGCTTTC+TGG + chr1.4:65321825-65321844 MS.gene036431:CDS 35.0%
TTGCAATATATGAGAGAGTG+GGG + chr1.4:65321708-65321727 MS.gene036431:CDS 35.0%
! ATGGGTTAATGCATTCGATT+TGG + chr1.4:65321470-65321489 MS.gene036431:CDS 35.0%
! TGGAGCAATTTTGTATACTG+CGG + chr1.4:65321080-65321099 MS.gene036431:CDS 35.0%
!! AATTCTAATGGAAAGGCACT+AGG + chr1.4:65320415-65320434 MS.gene036431:CDS 35.0%
!! AGGTTGATGATAATACCTTG+TGG - chr1.4:65319837-65319856 None:intergenic 35.0%
!! GATATAATGATGGTGCGTTT+TGG + chr1.4:65321157-65321176 MS.gene036431:CDS 35.0%
!!! TGGTTTTGAGTGTTCTTGTT+GGG + chr1.4:65319743-65319762 MS.gene036431:CDS 35.0%
!!! TTGGTTTTGAGTGTTCTTGT+TGG + chr1.4:65319742-65319761 MS.gene036431:CDS 35.0%
AAAAACAGACCAAAGCTCTC+CGG - chr1.4:65321427-65321446 None:intergenic 40.0%
AACAAGATCGGTGAACATGT+CGG + chr1.4:65321363-65321382 MS.gene036431:CDS 40.0%
AAGAGGTGAAGGAAGAGAAA+AGG - chr1.4:65319805-65319824 None:intergenic 40.0%
AAGGTTGTGTATTCCAAACC+TGG - chr1.4:65320828-65320847 None:intergenic 40.0%
AATACACAACCTTGCGATAG+AGG + chr1.4:65320835-65320854 MS.gene036431:CDS 40.0%
AGAGGTGAAGGAAGAGAAAA+GGG - chr1.4:65319804-65319823 None:intergenic 40.0%
ATAATACCTTGTGGCCATTG+TGG - chr1.4:65319828-65319847 None:intergenic 40.0%
ATGCTCTCATTGAGCATTAC+GGG + chr1.4:65320992-65321011 MS.gene036431:CDS 40.0%
CATGCTCTCATTGAGCATTA+CGG + chr1.4:65320991-65321010 MS.gene036431:CDS 40.0%
CATGTAAAACCAGCATTAGG+AGG + chr1.4:65321255-65321274 MS.gene036431:CDS 40.0%
GAGTCATTACAGAACCATGT+TGG + chr1.4:65321685-65321704 MS.gene036431:CDS 40.0%
GCATGAATCTGGTTGAGATT+CGG - chr1.4:65320976-65320995 None:intergenic 40.0%
GGAACAATCAGCTTGAGATT+TGG - chr1.4:65320557-65320576 None:intergenic 40.0%
GGATCAGAGTCAAAGAATTC+TGG - chr1.4:65319777-65319796 None:intergenic 40.0%
GGATCATCCAAACTTGGAAT+AGG + chr1.4:65321576-65321595 MS.gene036431:CDS 40.0%
GGTTGCAATATATGAGAGAG+TGG + chr1.4:65321706-65321725 MS.gene036431:CDS 40.0%
TATACTGCGGGTAATGCAAA+GGG + chr1.4:65321093-65321112 MS.gene036431:CDS 40.0%
TATCACGGCACAAATTTACC+TGG + chr1.4:65321129-65321148 MS.gene036431:CDS 40.0%
TCTTCAACTTTCGGTTCATC+TGG - chr1.4:65320721-65320740 None:intergenic 40.0%
TGAGAAATACATGCCGTCAT+CGG + chr1.4:65321038-65321057 MS.gene036431:CDS 40.0%
! AATCCATCTGGAATCTCCAA+AGG - chr1.4:65320457-65320476 None:intergenic 40.0%
! AATGACACTTTAAGGGTTGC+AGG - chr1.4:65321327-65321346 None:intergenic 40.0%
! GGAGCAATTTTGTATACTGC+GGG + chr1.4:65321081-65321100 MS.gene036431:CDS 40.0%
! TTATAACCCTTTGGAGGGTT+AGG - chr1.4:65320670-65320689 None:intergenic 40.0%
!! AAGTGGCTTTTTAAGAGCCA+AGG - chr1.4:65320590-65320609 None:intergenic 40.0%
!!! GTGTCGTGGTTTTTCAAGAA+TGG + chr1.4:65321060-65321079 MS.gene036431:CDS 40.0%
!!! GTTTTTTTCTCTGAGCACAG+TGG + chr1.4:65321441-65321460 MS.gene036431:CDS 40.0%
!!! TGGGTTTTTTGCCCATTCAA+TGG + chr1.4:65321300-65321319 MS.gene036431:CDS 40.0%
AAAAACCACGACACCGATGA+CGG - chr1.4:65321054-65321073 None:intergenic 45.0%
AACTTTCGGTTCATCTGGAC+TGG - chr1.4:65320716-65320735 None:intergenic 45.0%
AAGAGCCAAGGATTCTGACT+CGG - chr1.4:65320578-65320597 None:intergenic 45.0%
AAGGAGAAGGACAATTGGCT+AGG + chr1.4:65321870-65321889 MS.gene036431:CDS 45.0%
AGCCAATTGTCCTTCTCCTT+TGG - chr1.4:65321870-65321889 None:intergenic 45.0%
AGCTTGTGAGTGATCTACTC+AGG + chr1.4:65320307-65320326 MS.gene036431:intron 45.0%
ATGCTAGCTATCCTCATGCA+GGG + chr1.4:65321541-65321560 MS.gene036431:CDS 45.0%
ATTGTTGCTGCCGAGTATCT+TGG + chr1.4:65321657-65321676 MS.gene036431:CDS 45.0%
CAAGTTTGGATGATCCCTGA+AGG - chr1.4:65321572-65321591 None:intergenic 45.0%
CCAAAGGGTTATAAAGCCGT+CGG + chr1.4:65320676-65320695 MS.gene036431:CDS 45.0%
CCAAGACAGGAAAATCCATC+TGG - chr1.4:65320469-65320488 None:intergenic 45.0%
CCATCATTATATCCTCCACC+AGG - chr1.4:65321150-65321169 None:intergenic 45.0%
CCTGGTGGAGGATATAATGA+TGG + chr1.4:65321147-65321166 MS.gene036431:CDS 45.0%
CTTCAGGGATCATCCAAACT+TGG + chr1.4:65321570-65321589 MS.gene036431:CDS 45.0%
GAAGGAAGAGAAAAGGGAAG+TGG - chr1.4:65319798-65319817 None:intergenic 45.0%
GAAGGGAAACATAGAGAGTG+CGG + chr1.4:65321221-65321240 MS.gene036431:CDS 45.0%
GACGGCATGTATTTCTCATC+AGG - chr1.4:65321036-65321055 None:intergenic 45.0%
GACTCCATCACCAAGATACT+CGG - chr1.4:65321670-65321689 None:intergenic 45.0%
GCGAACTCCTATTCCAAGTT+TGG - chr1.4:65321586-65321605 None:intergenic 45.0%
GTATACTGCGGGTAATGCAA+AGG + chr1.4:65321092-65321111 MS.gene036431:CDS 45.0%
GTCCAAAGGAGAAGGACAAT+TGG + chr1.4:65321865-65321884 MS.gene036431:CDS 45.0%
TCTGTCGGAACATTCTTCTG+TGG + chr1.4:65320877-65320896 MS.gene036431:CDS 45.0%
TGAGCACAGTGGAGGTAAAT+GGG + chr1.4:65321452-65321471 MS.gene036431:CDS 45.0%
TTCCTTCACCTCTTCCACAA+TGG + chr1.4:65319811-65319830 MS.gene036431:CDS 45.0%
TTGTGAGTGATCTACTCAGG+TGG + chr1.4:65320310-65320329 MS.gene036431:intron 45.0%
TTGTTCCGAGTCAGAATCCT+TGG + chr1.4:65320570-65320589 MS.gene036431:CDS 45.0%
TTTCTCGCATCTTCATCGGT+AGG - chr1.4:65321192-65321211 None:intergenic 45.0%
! ACGGCTTTATAACCCTTTGG+AGG - chr1.4:65320676-65320695 None:intergenic 45.0%
! AGACCTTTGGAGATTCCAGA+TGG + chr1.4:65320451-65320470 MS.gene036431:CDS 45.0%
! CGGCTTTATAACCCTTTGGA+GGG - chr1.4:65320675-65320694 None:intergenic 45.0%
! CTAGCTAGAGGTGTATCTGT+CGG + chr1.4:65320862-65320881 MS.gene036431:CDS 45.0%
! GATAGAGGTATGCTAGCTAG+AGG + chr1.4:65320850-65320869 MS.gene036431:CDS 45.0%
! GCTCAATGAGAGCATGAATC+TGG - chr1.4:65320987-65321006 None:intergenic 45.0%
! TTTTTCTCTGAGCACAGTGG+AGG + chr1.4:65321444-65321463 MS.gene036431:CDS 45.0%
!! CCAGATGGATTTTCCTGTCT+TGG + chr1.4:65320466-65320485 MS.gene036431:CDS 45.0%
ACAAGAACGTGTCCTCGCAA+CGG - chr1.4:65320517-65320536 None:intergenic 50.0%
AGGGTTGCAGGTCCATTGAA+TGG - chr1.4:65321315-65321334 None:intergenic 50.0%
CACGGCACAAATTTACCTGG+TGG + chr1.4:65321132-65321151 MS.gene036431:CDS 50.0%
CATGCAGGGACTTACCTTCA+GGG + chr1.4:65321555-65321574 MS.gene036431:CDS 50.0%
CATGCTAGCTATCCTCATGC+AGG + chr1.4:65321540-65321559 MS.gene036431:CDS 50.0%
CATTGAGCATTACGGGCCAA+CGG + chr1.4:65320999-65321018 MS.gene036431:CDS 50.0%
CCCAAGGGATATTCTTCCAC+CGG - chr1.4:65320344-65320363 None:intergenic 50.0%
CCGGTGGAAGAATATCCCTT+GGG + chr1.4:65320341-65320360 MS.gene036431:CDS 50.0%
CGGTGAACATGTCGGTGATT+GGG + chr1.4:65321371-65321390 MS.gene036431:CDS 50.0%
CTGAGCACAGTGGAGGTAAA+TGG + chr1.4:65321451-65321470 MS.gene036431:CDS 50.0%
GCTAGCATACCTCTATCGCA+AGG - chr1.4:65320847-65320866 None:intergenic 50.0%
GGCACAAATTTACCTGGTGG+AGG + chr1.4:65321135-65321154 MS.gene036431:CDS 50.0%
GGGTTGCAGGTCCATTGAAT+GGG - chr1.4:65321314-65321333 None:intergenic 50.0%
GGTGGTAACTACTATGCCGA+CGG - chr1.4:65320695-65320714 None:intergenic 50.0%
GTAAAGGCTCCTCCTAATGC+TGG - chr1.4:65321267-65321286 None:intergenic 50.0%
GTGGCAGTAGTAACCAAGAC+AGG - chr1.4:65320482-65320501 None:intergenic 50.0%
TCATGCAGGGACTTACCTTC+AGG + chr1.4:65321554-65321573 MS.gene036431:CDS 50.0%
TCCTCACCAGAAAGCTCTGT+TGG - chr1.4:65321834-65321853 None:intergenic 50.0%
TCCTTCTCCTTTGGACCAGT+TGG - chr1.4:65321861-65321880 None:intergenic 50.0%
TCGGTGAACATGTCGGTGAT+TGG + chr1.4:65321370-65321389 MS.gene036431:CDS 50.0%
TGAAGGTAAGTCCCTGCATG+AGG - chr1.4:65321555-65321574 None:intergenic 50.0%
TGAGTGATCTACTCAGGTGG+TGG + chr1.4:65320313-65320332 MS.gene036431:intron 50.0%
TGGTTGCCTAACCCTCCAAA+GGG + chr1.4:65320661-65320680 MS.gene036431:CDS 50.0%
TTGGTTGCCTAACCCTCCAA+AGG + chr1.4:65320660-65320679 MS.gene036431:CDS 50.0%
! AACAGAGCTTTCTGGTGAGG+AGG + chr1.4:65321833-65321852 MS.gene036431:CDS 50.0%
! ACAGAGCTTTCTGGTGAGGA+GGG + chr1.4:65321834-65321853 MS.gene036431:CDS 50.0%
! CCGACGGCTTTATAACCCTT+TGG - chr1.4:65320679-65320698 None:intergenic 50.0%
! TCCAACAGAGCTTTCTGGTG+AGG + chr1.4:65321830-65321849 MS.gene036431:CDS 50.0%
! TTTCGGTTCATCTGGACTGG+TGG - chr1.4:65320713-65320732 None:intergenic 50.0%
!! TACTCAGGTGGTGGTTTTGC+CGG + chr1.4:65320322-65320341 MS.gene036431:intron 50.0%
AGGACACGTTCTTGTCGCTC+GGG + chr1.4:65320522-65320541 MS.gene036431:CDS 55.0%
CCTCTTCCACAATGGCCACA+AGG + chr1.4:65319819-65319838 MS.gene036431:CDS 55.0%
CCTTGTGGCCATTGTGGAAG+AGG - chr1.4:65319822-65319841 None:intergenic 55.0%
CTTCGCGTGAGCAACTTCAC+CGG + chr1.4:65321405-65321424 MS.gene036431:CDS 55.0%
GAGGACACGTTCTTGTCGCT+CGG + chr1.4:65320521-65320540 MS.gene036431:CDS 55.0%
GCAACGGCTGATCATTGGAG+TGG - chr1.4:65320501-65320520 None:intergenic 55.0%
GCAACTTCACCGGAGAGCTT+TGG + chr1.4:65321415-65321434 MS.gene036431:CDS 55.0%
GCCAACTGGTCCAAAGGAGA+AGG + chr1.4:65321857-65321876 MS.gene036431:CDS 55.0%
GCCGGTGGAAGAATATCCCT+TGG + chr1.4:65320340-65320359 MS.gene036431:CDS 55.0%
GCTGCCGAGTATCTTGGTGA+TGG + chr1.4:65321663-65321682 MS.gene036431:CDS 55.0%
GGCCATTGTGGAAGAGGTGA+AGG - chr1.4:65319816-65319835 None:intergenic 55.0%
GGTGAAGTTGCTCACGCGAA+GGG - chr1.4:65321406-65321425 None:intergenic 55.0%
TCCAATGATCAGCCGTTGCG+AGG + chr1.4:65320502-65320521 MS.gene036431:CDS 55.0%
TCCTCGCAACGGCTGATCAT+TGG - chr1.4:65320506-65320525 None:intergenic 55.0%
! CAGAGCTTTCTGGTGAGGAG+GGG + chr1.4:65321835-65321854 MS.gene036431:CDS 55.0%
CGGTGAAGTTGCTCACGCGA+AGG - chr1.4:65321407-65321426 None:intergenic 60.0%
!! ACATGCCGTCATCGGTGTCG+TGG + chr1.4:65321046-65321065 MS.gene036431:CDS 60.0%
!! TCAGGTGGTGGTTTTGCCGG+TGG + chr1.4:65320325-65320344 MS.gene036431:intron 60.0%
GGAGGGGCCAACTGGTCCAA+AGG + chr1.4:65321851-65321870 MS.gene036431:CDS 65.0%
TCTGGTGAGGAGGGGCCAAC+TGG + chr1.4:65321843-65321862 MS.gene036431:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 65319738 65321908 65319738 ID=MS.gene036431
chr1.4 mRNA 65319738 65321908 65319738 ID=MS.gene036431.t1;Parent=MS.gene036431
chr1.4 exon 65319738 65319840 65319738 ID=MS.gene036431.t1.exon1;Parent=MS.gene036431.t1
chr1.4 CDS 65319738 65319840 65319738 ID=cds.MS.gene036431.t1;Parent=MS.gene036431.t1
chr1.4 exon 65320329 65321908 65320329 ID=MS.gene036431.t1.exon2;Parent=MS.gene036431.t1
chr1.4 CDS 65320329 65321908 65320329 ID=cds.MS.gene036431.t1;Parent=MS.gene036431.t1
Gene Sequence

>MS.gene036431

ATGTTTGGTTTTGAGTGTTCTTGTTGGGATAGTTTGCCAGAATTCTTTGACTCTGATCCACTTCCCTTTTCTCTTCCTTCACCTCTTCCACAATGGCCACAAGGTATTATCATCAACCTTCCCTTTTTCTATTATTTTTTTCTTCTTTCTAATTAAAGCAACATATTCCTGTTTTAATCATCAACTCAAACTAGACAGACACTTTTATTACTGTGTTCTTTCTATTTTGGACAGATTATTCAATCATAATTTGTTTTTTTTTTTTTTTTTTATATTTGTGCTGTTTTTTATTGGTATTACTGTGATTAATTTTGGAAATTGTAGTATTTTTTGCAGATATTGGTTTTACTTAATTTTCAAGCTTACTTCTTGATTTTGTTTCATATTGATGCATTAAATAAGTATCTTTATTGCATATTTTGCTATGTCAATGTTTTACAAAGTTCTCGCTACATATATCAAAATTGAATTTTTTACTATGAATACTATTTGATTTCGTTTTGGTTATTGGCTATGTATAATGTCGAATGTTTGTGACTTAAATTATCTTATTTATAAACTAAGTTCTAAGCTTGTGAGTGATCTACTCAGGTGGTGGTTTTGCCGGTGGAAGAATATCCCTTGGGAAAATACAAGTTACAAAAGTAAACAAGTTTGAGAAAGTTTGGAGATGCACAAATTCTAATGGAAAGGCACTAGGTTTCACATTTTATAGACCTTTGGAGATTCCAGATGGATTTTCCTGTCTTGGTTACTACTGCCACTCCAATGATCAGCCGTTGCGAGGACACGTTCTTGTCGCTCGGGAGATTACTTCCAAATCTCAAGCTGATTGTTCCGAGTCAGAATCCTTGGCTCTTAAAAAGCCACTTAATTACTCGTTAATATGGTGCATGGACTCACATGATGAATGTGTTTACTTTTGGTTGCCTAACCCTCCAAAGGGTTATAAAGCCGTCGGCATAGTAGTTACCACCAGTCCAGATGAACCGAAAGTTGAAGAAGTTCGATGCGTGCGAACCGATCTAACAGAAGTTTGTGAGACATCTGATCTCTTACTAACAATAAAGTCAAAGAAAAATTCTTTCCAGGTTTGGAATACACAACCTTGCGATAGAGGTATGCTAGCTAGAGGTGTATCTGTCGGAACATTCTTCTGTGGCACCTACTTTGATTCTGAACAAGTGGTTGATGTTGTGTGTTTGAAGAATCTTGATTCTTCGTTGCACGCAATGCCGAATCTCAACCAGATTCATGCTCTCATTGAGCATTACGGGCCAACGGTATATTTTCATCCTGATGAGAAATACATGCCGTCATCGGTGTCGTGGTTTTTCAAGAATGGAGCAATTTTGTATACTGCGGGTAATGCAAAGGGTAAAGCTATAGATTATCACGGCACAAATTTACCTGGTGGAGGATATAATGATGGTGCGTTTTGGATTGATTTGCCTACCGATGAAGATGCGAGAAATAATCTTAAGAAGGGAAACATAGAGAGTGCGGAACTCTATGTTCATGTAAAACCAGCATTAGGAGGAGCCTTTACTGATATTGCAATGTGGGTTTTTTGCCCATTCAATGGACCTGCAACCCTTAAAGTGTCATTGATGAACATTGAGATGAACAAGATCGGTGAACATGTCGGTGATTGGGAGCACTTCACCCTTCGCGTGAGCAACTTCACCGGAGAGCTTTGGTCTGTTTTTTTCTCTGAGCACAGTGGAGGTAAATGGGTTAATGCATTCGATTTGGAGTTTATTAAGGAGAATAAACCAATAGTTTATTCATCAAGACATGGGCATGCTAGCTATCCTCATGCAGGGACTTACCTTCAGGGATCATCCAAACTTGGAATAGGAGTTCGCAACGATGCTGCTAAAAGTAATTTTATTCTGGATTCGAGCTTTAGATACAAGATTGTTGCTGCCGAGTATCTTGGTGATGGAGTCATTACAGAACCATGTTGGTTGCAATATATGAGAGAGTGGGGTCCTACCATTGTATATGATTCACGTTCTGAAATAGAGAAGATAATAGACATGCTTCCAATATTTGTTAGGTTTTCTGTGGAGAACCTTTTTGAATTATTTCCAACAGAGCTTTCTGGTGAGGAGGGGCCAACTGGTCCAAAGGAGAAGGACAATTGGCTAGGTGATGAATATTGCTAG

Protein sequence

>MS.gene036431.t1

MFGFECSCWDSLPEFFDSDPLPFSLPSPLPQWPQGGGFAGGRISLGKIQVTKVNKFEKVWRCTNSNGKALGFTFYRPLEIPDGFSCLGYYCHSNDQPLRGHVLVAREITSKSQADCSESESLALKKPLNYSLIWCMDSHDECVYFWLPNPPKGYKAVGIVVTTSPDEPKVEEVRCVRTDLTEVCETSDLLLTIKSKKNSFQVWNTQPCDRGMLARGVSVGTFFCGTYFDSEQVVDVVCLKNLDSSLHAMPNLNQIHALIEHYGPTVYFHPDEKYMPSSVSWFFKNGAILYTAGNAKGKAIDYHGTNLPGGGYNDGAFWIDLPTDEDARNNLKKGNIESAELYVHVKPALGGAFTDIAMWVFCPFNGPATLKVSLMNIEMNKIGEHVGDWEHFTLRVSNFTGELWSVFFSEHSGGKWVNAFDLEFIKENKPIVYSSRHGHASYPHAGTYLQGSSKLGIGVRNDAAKSNFILDSSFRYKIVAAEYLGDGVITEPCWLQYMREWGPTIVYDSRSEIEKIIDMLPIFVRFSVENLFELFPTELSGEEGPTGPKEKDNWLGDEYC