AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene036433


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene036433.t1 MTR_1g080370 98.214 560 10 0 1 560 1 560 0.0 1144
MS.gene036433.t1 MTR_1g080410 98.214 560 10 0 1 560 1 560 0.0 1144
MS.gene036433.t1 MTR_5g007860 56.491 570 231 7 4 558 38 605 0.0 665
MS.gene036433.t1 MTR_4g077620 55.360 569 239 8 1 558 3 567 0.0 657
MS.gene036433.t1 MTR_2g062430 47.434 565 265 12 6 558 8 552 3.22e-175 506
MS.gene036433.t1 MTR_2g067640 45.471 552 264 10 20 558 13 540 6.91e-170 493
MS.gene036433.t1 MTR_2g062410 46.014 552 271 10 18 558 50 585 1.97e-167 488
MS.gene036433.t1 MTR_2g062370 44.991 549 273 9 23 558 57 589 9.59e-161 471
MS.gene036433.t1 MTR_4g131710 44.646 551 274 10 23 558 51 585 2.72e-160 470
MS.gene036433.t1 MTR_2g062380 45.810 537 261 9 35 558 40 559 5.37e-154 452
MS.gene036433.t1 MTR_2g062340 44.505 546 244 9 23 558 20 516 4.34e-151 444
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene036433.t1 AT3G04350 64.685 572 185 7 1 560 1 567 0.0 764
MS.gene036433.t1 AT5G18490 63.298 564 187 8 4 560 3 553 0.0 735
MS.gene036433.t1 AT3G04350 65.234 535 172 6 35 560 16 545 0.0 724
MS.gene036433.t1 AT1G04090 53.899 577 244 9 1 560 1 572 0.0 650
MS.gene036433.t1 AT5G43950 53.578 573 242 9 1 558 1 564 0.0 632
MS.gene036433.t1 AT2G44260 45.588 544 268 9 23 558 29 552 5.45e-167 486
MS.gene036433.t1 AT2G44230 45.155 547 264 10 23 558 20 541 3.29e-166 483
MS.gene036433.t1 AT2G44260 45.489 532 262 9 35 558 71 582 1.24e-161 473
MS.gene036433.t1 AT3G01870 41.355 561 289 13 15 558 46 583 1.66e-139 416
MS.gene036433.t1 AT3G01880 41.637 562 288 14 15 558 50 589 1.94e-138 414

Find 139 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTCATCAATGACACTTTA+AGG 0.107306 1.4:-65400462 None:intergenic
TAAACAAGTTTGAGAAAGTT+TGG 0.235719 1.4:+65399513 MS.gene036433:CDS
CTGAGCACAGTGGAGGTAAA+TGG 0.247800 1.4:+65400581 MS.gene036433:CDS
TTATTTCCAACAGAGCTTTC+TGG 0.254169 1.4:+65400955 MS.gene036433:CDS
CACTTAATTACTCATTAATA+TGG 0.264581 1.4:+65399735 MS.gene036433:CDS
AGCCAATTGTCCTTCTCCTT+TGG 0.307063 1.4:-65400997 None:intergenic
GCGAACTCCTATTCCAAGTT+TGG 0.314359 1.4:-65400713 None:intergenic
TGGGTTTGGTAAGGGATGTT+TGG 0.319083 1.4:+65398908 None:intergenic
TGTCTTGATGAATAAACTAT+TGG 0.322222 1.4:-65400643 None:intergenic
ACAGAAAACCTAACAAATAT+TGG 0.329471 1.4:-65400916 None:intergenic
GATATAATGATGGTGCGTTT+TGG 0.329648 1.4:+65400287 MS.gene036433:CDS
CATCGAACTTCTTCAACTTT+CGG 0.340671 1.4:-65399857 None:intergenic
TCTTCAACTTTCGGTTCATC+TGG 0.342527 1.4:-65399848 None:intergenic
ATGGGTTAATGCATTCGATT+TGG 0.345620 1.4:+65400600 MS.gene036433:CDS
ATTCGATTTGGAGTTTATTC+AGG 0.347982 1.4:+65400612 MS.gene036433:CDS
ATGATGAATGTGTTTACTTT+TGG 0.348745 1.4:+65399771 MS.gene036433:CDS
TCCTTCTCCTTTGGACCAGT+TGG 0.349557 1.4:-65400988 None:intergenic
ACATGCTTCCAATATTTGTT+AGG 0.353415 1.4:+65400908 MS.gene036433:CDS
CATGCTCTTATTGAGCATTA+CGG 0.358178 1.4:+65400121 MS.gene036433:CDS
AATGACACTTTAAGGGTTGC+AGG 0.360391 1.4:-65400454 None:intergenic
ATGCTCTTATTGAGCATTAC+GGG 0.370883 1.4:+65400122 MS.gene036433:CDS
GTTCATCAATGACACTTTAA+GGG 0.377575 1.4:-65400461 None:intergenic
TCTGGTGAGGAGGGGCCAAC+TGG 0.379305 1.4:+65400973 MS.gene036433:CDS
AACTTTCGGTTCATCTGGAT+TGG 0.384698 1.4:-65399843 None:intergenic
TTACTCATTAATATGGTGTA+TGG 0.386638 1.4:+65399742 MS.gene036433:CDS
CTGTTGGAAATAATTCAAAA+AGG 0.390774 1.4:-65400945 None:intergenic
AGAGGTGAAGGAAGAGAAAA+GGG 0.395917 1.4:-65398986 None:intergenic
AAGAGGTGAAGGAAGAGAAA+AGG 0.400057 1.4:-65398987 None:intergenic
TCATGCAGGGACTTACCTTC+AGG 0.415789 1.4:+65400684 MS.gene036433:CDS
CATATTAATGAGTAATTAAG+TGG 0.423515 1.4:-65399734 None:intergenic
AGGGTTGCAGGTCCATTGAA+TGG 0.426014 1.4:-65400442 None:intergenic
TCCTCGCAACGGCTGATCAT+TGG 0.426252 1.4:-65399633 None:intergenic
GTTCATGTAAAACCAGCATT+AGG 0.426763 1.4:+65400382 MS.gene036433:CDS
GCTCAATAAGAGCATGAATC+TGG 0.427486 1.4:-65400114 None:intergenic
ATTGTTGCTGCCGGGTATCT+TGG 0.427869 1.4:+65400787 MS.gene036433:CDS
CCGACGGCTTTATAACCCTT+TGG 0.428360 1.4:-65399806 None:intergenic
CTTCAGGGATCATCCAAACT+TGG 0.432488 1.4:+65400700 MS.gene036433:CDS
CGGTGAACATGTCGGTGATT+GGG 0.432674 1.4:+65400501 MS.gene036433:CDS
TCGGTGAACATGTCGGTGAT+TGG 0.434338 1.4:+65400500 MS.gene036433:CDS
GCAACTTCACCGGAGAGCTT+TGG 0.443367 1.4:+65400545 MS.gene036433:CDS
TTATAACCCTTTGGAGGGTT+AGG 0.448233 1.4:-65399797 None:intergenic
GGATCATCCAAACTTGGAAT+AGG 0.450282 1.4:+65400706 MS.gene036433:CDS
GATGGCATGTATTTCTCATC+AGG 0.457793 1.4:-65400163 None:intergenic
CCCAAGTGATATTCTTCCAC+CGG 0.460813 1.4:-65399471 None:intergenic
TCCTCACCAGAAAGCTCTGT+TGG 0.461764 1.4:-65400961 None:intergenic
GCATGAATCTGGTTGAGATT+CGG 0.468325 1.4:-65400103 None:intergenic
AATACACAACCTTGCGATAG+AGG 0.468770 1.4:+65399965 MS.gene036433:CDS
CCAAGACAGGAAAATCCATC+TGG 0.469039 1.4:-65399596 None:intergenic
GAGGACACGTTCTTGTCGCT+CGG 0.471944 1.4:+65399651 MS.gene036433:CDS
TGAGCACAGTGGAGGTAAAT+GGG 0.475593 1.4:+65400582 MS.gene036433:CDS
CTTTACTGATATTGCAATGT+GGG 0.475927 1.4:+65400411 MS.gene036433:CDS
GAAGGAAGAGAAAAGGGAAG+TGG 0.478043 1.4:-65398980 None:intergenic
TGCGAGAAATAATCTTAAGA+AGG 0.480833 1.4:+65400333 MS.gene036433:CDS
ACGGCTTTATAACCCTTTGG+AGG 0.486012 1.4:-65399803 None:intergenic
TTTCGGTTCATCTGGATTGG+TGG 0.487936 1.4:-65399840 None:intergenic
GTCCAAAGGAGAAGGACAAT+TGG 0.490950 1.4:+65400995 MS.gene036433:CDS
GGGTTGCAGGTCCATTGAAT+GGG 0.500640 1.4:-65400441 None:intergenic
CTACTTTGATTCTGAACAAG+TGG 0.505519 1.4:+65400033 MS.gene036433:CDS
CTCGCAAACTTCTGTTAGAT+CGG 0.508339 1.4:-65399888 None:intergenic
CGGTGAAGTTGCTCACGCGA+AGG 0.508371 1.4:-65400534 None:intergenic
CATGCTAGCTATCCTCATGC+AGG 0.510869 1.4:+65400670 MS.gene036433:CDS
CCTTGTGGCCATTGTGGAAG+AGG 0.512962 1.4:-65399004 None:intergenic
CCACATTGCAATATCAGTAA+AGG 0.513990 1.4:-65400410 None:intergenic
CTAGCTAGAGGTGTATCTGT+TGG 0.516741 1.4:+65399992 MS.gene036433:CDS
TTGGTTGCCTAACCCTCCAA+AGG 0.523651 1.4:+65399790 MS.gene036433:CDS
GATACAAGATTGTTGCTGCC+GGG 0.529740 1.4:+65400779 MS.gene036433:CDS
CATGCAGGGACTTACCTTCA+GGG 0.530671 1.4:+65400685 MS.gene036433:CDS
AACAGAGCTTTCTGGTGAGG+AGG 0.540070 1.4:+65400963 MS.gene036433:CDS
GTATACTGCGGGTAATGCAA+AGG 0.543009 1.4:+65400222 MS.gene036433:CDS
ACAGAGCTTTCTGGTGAGGA+GGG 0.543440 1.4:+65400964 MS.gene036433:CDS
GCCGGTGGAAGAATATCACT+TGG 0.543957 1.4:+65399470 MS.gene036433:CDS
GTAAAGGCTCCTCCTAATGC+TGG 0.544725 1.4:-65400394 None:intergenic
AGAATACCTTGTGGCCATTG+TGG 0.547018 1.4:-65399010 None:intergenic
AAGAGCTGGGGATTCTGACT+CGG 0.549133 1.4:-65399705 None:intergenic
AGGACACGTTCTTGTCGCTC+GGG 0.549143 1.4:+65399652 MS.gene036433:CDS
AATTCTAACGGAAAGGCACT+AGG 0.549895 1.4:+65399545 MS.gene036433:CDS
AGACCTTTGGAGATTCCAGA+TGG 0.551683 1.4:+65399581 MS.gene036433:CDS
TTCCTTCACCTCTTCCACAA+TGG 0.552183 1.4:+65398996 MS.gene036433:CDS
AGATACAAGATTGTTGCTGC+CGG 0.552734 1.4:+65400778 MS.gene036433:CDS
CGGCTTTATAACCCTTTGGA+GGG 0.557691 1.4:-65399802 None:intergenic
GACTCCATCACCAAGATACC+CGG 0.558460 1.4:-65400797 None:intergenic
GGTGAAGTTGCTCACGCGAA+GGG 0.560176 1.4:-65400533 None:intergenic
ATTATTTCTCGCATCTTCAT+CGG 0.561997 1.4:-65400323 None:intergenic
CGTGAATCATATACAATGGT+AGG 0.564534 1.4:-65400862 None:intergenic
TCCAACAGAGCTTTCTGGTG+AGG 0.565118 1.4:+65400960 MS.gene036433:CDS
GCGAGAAATAATCTTAAGAA+GGG 0.567421 1.4:+65400334 MS.gene036433:CDS
GACTCGGAACAATCAGCTTG+AGG 0.567833 1.4:-65399689 None:intergenic
TTTCTCGCATCTTCATCGGT+AGG 0.570074 1.4:-65400319 None:intergenic
TATACTGCGGGTAATGCAAA+GGG 0.571900 1.4:+65400223 MS.gene036433:CDS
CATGTAAAACCAGCATTAGG+AGG 0.572269 1.4:+65400385 MS.gene036433:CDS
AACATTGAGATGAACAAGAT+CGG 0.572272 1.4:+65400481 MS.gene036433:CDS
TGGAGATGCACAAATTCTAA+CGG 0.580046 1.4:+65399533 MS.gene036433:CDS
TGGTTGCCTAACCCTCCAAA+GGG 0.582899 1.4:+65399791 MS.gene036433:CDS
CTTCGCGTGAGCAACTTCAC+CGG 0.582952 1.4:+65400535 MS.gene036433:CDS
TCCAATGATCAGCCGTTGCG+AGG 0.585934 1.4:+65399632 MS.gene036433:CDS
GCCAACTGGTCCAAAGGAGA+AGG 0.588714 1.4:+65400987 MS.gene036433:CDS
GTGGCAGTAGTAACCAAGAC+AGG 0.592567 1.4:-65399609 None:intergenic
AAGGTTGTGTATTCCAAACC+TGG 0.594362 1.4:-65399955 None:intergenic
AATCCATCTGGAATCTCCAA+AGG 0.594832 1.4:-65399584 None:intergenic
ACATGCCATCATCGGTGTCG+TGG 0.595421 1.4:+65400176 MS.gene036433:CDS
TATTGAGCATTACGGGCCAA+CGG 0.595833 1.4:+65400129 MS.gene036433:CDS
TCTGTTGGAACATTCTTCTG+TGG 0.597430 1.4:+65400007 MS.gene036433:CDS
CTCATATATTGCAACCAACA+TGG 0.598495 1.4:-65400829 None:intergenic
CCTCTTCCACAATGGCCACA+AGG 0.602749 1.4:+65399004 MS.gene036433:CDS
GGCACAAATTTACCTGGTGG+AGG 0.603301 1.4:+65400265 MS.gene036433:CDS
GGTTGCAATATATGAGAGAG+TGG 0.604682 1.4:+65400836 MS.gene036433:CDS
GCTGCCGGGTATCTTGGTGA+TGG 0.606924 1.4:+65400793 MS.gene036433:CDS
TGAGAAATACATGCCATCAT+CGG 0.607689 1.4:+65400168 MS.gene036433:CDS
TATCACGGCACAAATTTACC+TGG 0.610377 1.4:+65400259 MS.gene036433:CDS
AAGGAGAAGGACAATTGGCT+AGG 0.611868 1.4:+65401000 MS.gene036433:CDS
TAGTTTATTCATCAAGACAT+GGG 0.614112 1.4:+65400647 MS.gene036433:CDS
CCAAAGGGTTATAAAGCCGT+CGG 0.615266 1.4:+65399806 MS.gene036433:CDS
GGAGGGGCCAACTGGTCCAA+AGG 0.615580 1.4:+65400981 MS.gene036433:CDS
CCTGGTGGAGGATATAATGA+TGG 0.615594 1.4:+65400277 MS.gene036433:CDS
TCAGGATGAAAATATACCGT+TGG 0.617396 1.4:-65400145 None:intergenic
GGTGGTAACTACTATGCCGA+CGG 0.618472 1.4:-65399822 None:intergenic
CAAGTTTGGATGATCCCTGA+AGG 0.618933 1.4:-65400699 None:intergenic
GGTAAAGCTATAGATTATCA+CGG 0.619614 1.4:+65400244 MS.gene036433:CDS
ATGCACAAATTCTAACGGAA+AGG 0.619830 1.4:+65399538 MS.gene036433:CDS
CCTTTACTGATATTGCAATG+TGG 0.624376 1.4:+65400410 MS.gene036433:CDS
CACGGCACAAATTTACCTGG+TGG 0.625316 1.4:+65400262 MS.gene036433:CDS
CCATCATTATATCCTCCACC+AGG 0.627153 1.4:-65400277 None:intergenic
GTTGCAATATATGAGAGAGT+GGG 0.627285 1.4:+65400837 MS.gene036433:CDS
GGCCATTGTGGAAGAGGTGA+AGG 0.627997 1.4:-65398998 None:intergenic
GAAGGGAAACATAGAGAGTG+CGG 0.636222 1.4:+65400351 MS.gene036433:CDS
TGAAGGTAAGTCCCTGCATG+AGG 0.636865 1.4:-65400682 None:intergenic
ATAGTTTATTCATCAAGACA+TGG 0.637290 1.4:+65400646 MS.gene036433:CDS
ACAAGAACGTGTCCTCGCAA+CGG 0.637737 1.4:-65399644 None:intergenic
AACAAGATCGGTGAACATGT+CGG 0.653405 1.4:+65400493 MS.gene036433:CDS
CACTTGTTCAGAATCAAAGT+AGG 0.653816 1.4:-65400032 None:intergenic
AGAACGTGAATCATATACAA+TGG 0.654517 1.4:-65400866 None:intergenic
GCTAGCATACCTCTATCGCA+AGG 0.655324 1.4:-65399974 None:intergenic
ATGCTAGCTATCCTCATGCA+GGG 0.655682 1.4:+65400671 MS.gene036433:CDS
CAGAGCTTTCTGGTGAGGAG+GGG 0.657357 1.4:+65400965 MS.gene036433:CDS
CCGGTGGAAGAATATCACTT+GGG 0.660476 1.4:+65399471 MS.gene036433:CDS
GCAACGGCTGATCATTGGAG+TGG 0.664542 1.4:-65399628 None:intergenic
GAGTCATTACAGAACCATGT+TGG 0.666649 1.4:+65400815 MS.gene036433:CDS
TTGCAATATATGAGAGAGTG+GGG 0.676061 1.4:+65400838 MS.gene036433:CDS
GATAGAGGTATGCTAGCTAG+AGG 0.685865 1.4:+65399980 MS.gene036433:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATACTATTTGATTTCTTTT+TGG + chr1.4:65399349-65399368 MS.gene036433:intron 15.0%
!! ATTACTAAGCTTGAAAATTA+AGG - chr1.4:65399222-65399241 None:intergenic 20.0%
!! CACTTAATTACTCATTAATA+TGG + chr1.4:65399735-65399754 MS.gene036433:CDS 20.0%
!! CATATTAATGAGTAATTAAG+TGG - chr1.4:65399737-65399756 None:intergenic 20.0%
!!! ACTGTTTTCTTTCTATTTTT+TGG + chr1.4:65399083-65399102 MS.gene036433:intron 20.0%
!!! GATCTTATTGTCATTAATTT+TGG + chr1.4:65399164-65399183 MS.gene036433:intron 20.0%
!!! TAGTATTTTTTGCAGATATT+GGG + chr1.4:65399193-65399212 MS.gene036433:intron 20.0%
!!! TGCTAAAAGTAATTTTATTC+TGG + chr1.4:65400744-65400763 MS.gene036433:CDS 20.0%
!!! TTTGATTTCTTTTTGGTTAT+TGG + chr1.4:65399356-65399375 MS.gene036433:intron 20.0%
! AAGAAAAAAAGAATACCTTG+TGG - chr1.4:65399022-65399041 None:intergenic 25.0%
! ACAGAAAACCTAACAAATAT+TGG - chr1.4:65400919-65400938 None:intergenic 25.0%
! ATAGTTTATTCATCAAGACA+TGG + chr1.4:65400646-65400665 MS.gene036433:CDS 25.0%
! CTGTTGGAAATAATTCAAAA+AGG - chr1.4:65400948-65400967 None:intergenic 25.0%
! TAAACAAGTTTGAGAAAGTT+TGG + chr1.4:65399513-65399532 MS.gene036433:CDS 25.0%
! TAGTTTATTCATCAAGACAT+GGG + chr1.4:65400647-65400666 MS.gene036433:CDS 25.0%
! TGTCTTGATGAATAAACTAT+TGG - chr1.4:65400646-65400665 None:intergenic 25.0%
! TTACTCATTAATATGGTGTA+TGG + chr1.4:65399742-65399761 MS.gene036433:CDS 25.0%
!! ATGATGAATGTGTTTACTTT+TGG + chr1.4:65399771-65399790 MS.gene036433:CDS 25.0%
!! TTTTACGTTTTATAGACCTT+TGG + chr1.4:65399568-65399587 MS.gene036433:CDS 25.0%
!!! AATATTTGTTAGGTTTTCTG+TGG + chr1.4:65400918-65400937 MS.gene036433:CDS 25.0%
!!! CTTTATTTCATATTTTGCTG+TGG + chr1.4:65399274-65399293 MS.gene036433:intron 25.0%
!!! GTAGTATTTTTTGCAGATAT+TGG + chr1.4:65399192-65399211 MS.gene036433:intron 25.0%
AACATTGAGATGAACAAGAT+CGG + chr1.4:65400481-65400500 MS.gene036433:CDS 30.0%
ACATGCTTCCAATATTTGTT+AGG + chr1.4:65400908-65400927 MS.gene036433:CDS 30.0%
AGAAAAATTCTTTCCAGGTT+TGG + chr1.4:65399942-65399961 MS.gene036433:CDS 30.0%
AGAACGTGAATCATATACAA+TGG - chr1.4:65400869-65400888 None:intergenic 30.0%
CTTTACTGATATTGCAATGT+GGG + chr1.4:65400411-65400430 MS.gene036433:CDS 30.0%
GATCAGAGTCAAAAAATTCT+GGG - chr1.4:65398961-65398980 None:intergenic 30.0%
GCGAGAAATAATCTTAAGAA+GGG + chr1.4:65400334-65400353 MS.gene036433:CDS 30.0%
GGTAAAGCTATAGATTATCA+CGG + chr1.4:65400244-65400263 MS.gene036433:CDS 30.0%
GTTCATCAATGACACTTTAA+GGG - chr1.4:65400464-65400483 None:intergenic 30.0%
TGCGAGAAATAATCTTAAGA+AGG + chr1.4:65400333-65400352 MS.gene036433:CDS 30.0%
TGTTCATCAATGACACTTTA+AGG - chr1.4:65400465-65400484 None:intergenic 30.0%
! ATTATTTCTCGCATCTTCAT+CGG - chr1.4:65400326-65400345 None:intergenic 30.0%
!! ATTCGATTTGGAGTTTATTC+AGG + chr1.4:65400612-65400631 MS.gene036433:CDS 30.0%
ATGCACAAATTCTAACGGAA+AGG + chr1.4:65399538-65399557 MS.gene036433:CDS 35.0%
ATGCTCTTATTGAGCATTAC+GGG + chr1.4:65400122-65400141 MS.gene036433:CDS 35.0%
CACTTGTTCAGAATCAAAGT+AGG - chr1.4:65400035-65400054 None:intergenic 35.0%
CATCGAACTTCTTCAACTTT+CGG - chr1.4:65399860-65399879 None:intergenic 35.0%
CATGCTCTTATTGAGCATTA+CGG + chr1.4:65400121-65400140 MS.gene036433:CDS 35.0%
CCACATTGCAATATCAGTAA+AGG - chr1.4:65400413-65400432 None:intergenic 35.0%
CCTTTACTGATATTGCAATG+TGG + chr1.4:65400410-65400429 MS.gene036433:CDS 35.0%
CGTGAATCATATACAATGGT+AGG - chr1.4:65400865-65400884 None:intergenic 35.0%
CTACTTTGATTCTGAACAAG+TGG + chr1.4:65400033-65400052 MS.gene036433:CDS 35.0%
CTCATATATTGCAACCAACA+TGG - chr1.4:65400832-65400851 None:intergenic 35.0%
GGATCAGAGTCAAAAAATTC+TGG - chr1.4:65398962-65398981 None:intergenic 35.0%
GTCGAAGAAAAATTCTTTCC+AGG + chr1.4:65399937-65399956 MS.gene036433:CDS 35.0%
GTTCATGTAAAACCAGCATT+AGG + chr1.4:65400382-65400401 MS.gene036433:CDS 35.0%
GTTGCAATATATGAGAGAGT+GGG + chr1.4:65400837-65400856 MS.gene036433:CDS 35.0%
TCAGGATGAAAATATACCGT+TGG - chr1.4:65400148-65400167 None:intergenic 35.0%
TGAGAAATACATGCCATCAT+CGG + chr1.4:65400168-65400187 MS.gene036433:CDS 35.0%
TGGAGATGCACAAATTCTAA+CGG + chr1.4:65399533-65399552 MS.gene036433:CDS 35.0%
TTATTTCCAACAGAGCTTTC+TGG + chr1.4:65400955-65400974 MS.gene036433:CDS 35.0%
TTGCAATATATGAGAGAGTG+GGG + chr1.4:65400838-65400857 MS.gene036433:CDS 35.0%
! ATGGGTTAATGCATTCGATT+TGG + chr1.4:65400600-65400619 MS.gene036433:CDS 35.0%
! TGGAGCAATTTTGTATACTG+CGG + chr1.4:65400210-65400229 MS.gene036433:CDS 35.0%
!! GATATAATGATGGTGCGTTT+TGG + chr1.4:65400287-65400306 MS.gene036433:CDS 35.0%
!! TAAGTGGCTTTTTAAGAGCT+GGG - chr1.4:65399721-65399740 None:intergenic 35.0%
!! TGGTTGTGAGTGTTTTTGTT+GGG + chr1.4:65398928-65398947 MS.gene036433:CDS 35.0%
!! TTAAGTGGCTTTTTAAGAGC+TGG - chr1.4:65399722-65399741 None:intergenic 35.0%
!! TTGGTTGTGAGTGTTTTTGT+TGG + chr1.4:65398927-65398946 MS.gene036433:CDS 35.0%
AAAAACAGACCAAAGCTCTC+CGG - chr1.4:65400557-65400576 None:intergenic 40.0%
AACAAGATCGGTGAACATGT+CGG + chr1.4:65400493-65400512 MS.gene036433:CDS 40.0%
AACTTTCGGTTCATCTGGAT+TGG - chr1.4:65399846-65399865 None:intergenic 40.0%
AAGAGGTGAAGGAAGAGAAA+AGG - chr1.4:65398990-65399009 None:intergenic 40.0%
AAGGTTGTGTATTCCAAACC+TGG - chr1.4:65399958-65399977 None:intergenic 40.0%
AATACACAACCTTGCGATAG+AGG + chr1.4:65399965-65399984 MS.gene036433:CDS 40.0%
AGAGGTGAAGGAAGAGAAAA+GGG - chr1.4:65398989-65399008 None:intergenic 40.0%
AGATACAAGATTGTTGCTGC+CGG + chr1.4:65400778-65400797 MS.gene036433:CDS 40.0%
AGTTTGTGAGTGATCTACTC+AGG + chr1.4:65399437-65399456 MS.gene036433:intron 40.0%
CATGTAAAACCAGCATTAGG+AGG + chr1.4:65400385-65400404 MS.gene036433:CDS 40.0%
CTCGCAAACTTCTGTTAGAT+CGG - chr1.4:65399891-65399910 None:intergenic 40.0%
GAGTCATTACAGAACCATGT+TGG + chr1.4:65400815-65400834 MS.gene036433:CDS 40.0%
GATGGCATGTATTTCTCATC+AGG - chr1.4:65400166-65400185 None:intergenic 40.0%
GCATGAATCTGGTTGAGATT+CGG - chr1.4:65400106-65400125 None:intergenic 40.0%
GGATCATCCAAACTTGGAAT+AGG + chr1.4:65400706-65400725 MS.gene036433:CDS 40.0%
GGTTGCAATATATGAGAGAG+TGG + chr1.4:65400836-65400855 MS.gene036433:CDS 40.0%
TATACTGCGGGTAATGCAAA+GGG + chr1.4:65400223-65400242 MS.gene036433:CDS 40.0%
TATCACGGCACAAATTTACC+TGG + chr1.4:65400259-65400278 MS.gene036433:CDS 40.0%
TCTGTTGGAACATTCTTCTG+TGG + chr1.4:65400007-65400026 MS.gene036433:CDS 40.0%
TCTTCAACTTTCGGTTCATC+TGG - chr1.4:65399851-65399870 None:intergenic 40.0%
! AATCCATCTGGAATCTCCAA+AGG - chr1.4:65399587-65399606 None:intergenic 40.0%
! AATGACACTTTAAGGGTTGC+AGG - chr1.4:65400457-65400476 None:intergenic 40.0%
! GCTCAATAAGAGCATGAATC+TGG - chr1.4:65400117-65400136 None:intergenic 40.0%
! GGAGCAATTTTGTATACTGC+GGG + chr1.4:65400211-65400230 MS.gene036433:CDS 40.0%
! TTATAACCCTTTGGAGGGTT+AGG - chr1.4:65399800-65399819 None:intergenic 40.0%
!! AAGTGGCTTTTTAAGAGCTG+GGG - chr1.4:65399720-65399739 None:intergenic 40.0%
!! AATTCTAACGGAAAGGCACT+AGG + chr1.4:65399545-65399564 MS.gene036433:CDS 40.0%
!!! GTGTCGTGGTTTTTCAAGAA+TGG + chr1.4:65400190-65400209 MS.gene036433:CDS 40.0%
!!! GTTTTTTTCTCTGAGCACAG+TGG + chr1.4:65400571-65400590 MS.gene036433:CDS 40.0%
!!! TGGGTTTTTTGCCCATTCAA+TGG + chr1.4:65400430-65400449 MS.gene036433:CDS 40.0%
AAAAACCACGACACCGATGA+TGG - chr1.4:65400184-65400203 None:intergenic 45.0%
AAGGAGAAGGACAATTGGCT+AGG + chr1.4:65401000-65401019 MS.gene036433:CDS 45.0%
AGAATACCTTGTGGCCATTG+TGG - chr1.4:65399013-65399032 None:intergenic 45.0%
AGCCAATTGTCCTTCTCCTT+TGG - chr1.4:65401000-65401019 None:intergenic 45.0%
ATGCTAGCTATCCTCATGCA+GGG + chr1.4:65400671-65400690 MS.gene036433:CDS 45.0%
CAAGTTTGGATGATCCCTGA+AGG - chr1.4:65400702-65400721 None:intergenic 45.0%
CCAAAGGGTTATAAAGCCGT+CGG + chr1.4:65399806-65399825 MS.gene036433:CDS 45.0%
CCAAGACAGGAAAATCCATC+TGG - chr1.4:65399599-65399618 None:intergenic 45.0%
CCATCATTATATCCTCCACC+AGG - chr1.4:65400280-65400299 None:intergenic 45.0%
CCCAAGTGATATTCTTCCAC+CGG - chr1.4:65399474-65399493 None:intergenic 45.0%
CCGGTGGAAGAATATCACTT+GGG + chr1.4:65399471-65399490 MS.gene036433:CDS 45.0%
CCTGGTGGAGGATATAATGA+TGG + chr1.4:65400277-65400296 MS.gene036433:CDS 45.0%
CTTCAGGGATCATCCAAACT+TGG + chr1.4:65400700-65400719 MS.gene036433:CDS 45.0%
GAAGGAAGAGAAAAGGGAAG+TGG - chr1.4:65398983-65399002 None:intergenic 45.0%
GAAGGGAAACATAGAGAGTG+CGG + chr1.4:65400351-65400370 MS.gene036433:CDS 45.0%
GATACAAGATTGTTGCTGCC+GGG + chr1.4:65400779-65400798 MS.gene036433:CDS 45.0%
GCGAACTCCTATTCCAAGTT+TGG - chr1.4:65400716-65400735 None:intergenic 45.0%
GTATACTGCGGGTAATGCAA+AGG + chr1.4:65400222-65400241 MS.gene036433:CDS 45.0%
GTCCAAAGGAGAAGGACAAT+TGG + chr1.4:65400995-65401014 MS.gene036433:CDS 45.0%
TATTGAGCATTACGGGCCAA+CGG + chr1.4:65400129-65400148 MS.gene036433:CDS 45.0%
TGAGCACAGTGGAGGTAAAT+GGG + chr1.4:65400582-65400601 MS.gene036433:CDS 45.0%
TTCCTTCACCTCTTCCACAA+TGG + chr1.4:65398996-65399015 MS.gene036433:CDS 45.0%
TTGTGAGTGATCTACTCAGG+TGG + chr1.4:65399440-65399459 MS.gene036433:intron 45.0%
TTTCTCGCATCTTCATCGGT+AGG - chr1.4:65400322-65400341 None:intergenic 45.0%
! ACGGCTTTATAACCCTTTGG+AGG - chr1.4:65399806-65399825 None:intergenic 45.0%
! AGACCTTTGGAGATTCCAGA+TGG + chr1.4:65399581-65399600 MS.gene036433:CDS 45.0%
! CGGCTTTATAACCCTTTGGA+GGG - chr1.4:65399805-65399824 None:intergenic 45.0%
! CTAGCTAGAGGTGTATCTGT+TGG + chr1.4:65399992-65400011 MS.gene036433:CDS 45.0%
! GATAGAGGTATGCTAGCTAG+AGG + chr1.4:65399980-65399999 MS.gene036433:CDS 45.0%
! TTTCGGTTCATCTGGATTGG+TGG - chr1.4:65399843-65399862 None:intergenic 45.0%
! TTTTTCTCTGAGCACAGTGG+AGG + chr1.4:65400574-65400593 MS.gene036433:CDS 45.0%
!! CCAGATGGATTTTCCTGTCT+TGG + chr1.4:65399596-65399615 MS.gene036433:CDS 45.0%
AAGAGCTGGGGATTCTGACT+CGG - chr1.4:65399708-65399727 None:intergenic 50.0%
ACAAGAACGTGTCCTCGCAA+CGG - chr1.4:65399647-65399666 None:intergenic 50.0%
AGGGTTGCAGGTCCATTGAA+TGG - chr1.4:65400445-65400464 None:intergenic 50.0%
ATTGTTGCTGCCGGGTATCT+TGG + chr1.4:65400787-65400806 MS.gene036433:CDS 50.0%
CACGGCACAAATTTACCTGG+TGG + chr1.4:65400262-65400281 MS.gene036433:CDS 50.0%
CATGCAGGGACTTACCTTCA+GGG + chr1.4:65400685-65400704 MS.gene036433:CDS 50.0%
CATGCTAGCTATCCTCATGC+AGG + chr1.4:65400670-65400689 MS.gene036433:CDS 50.0%
CGGTGAACATGTCGGTGATT+GGG + chr1.4:65400501-65400520 MS.gene036433:CDS 50.0%
CTGAGCACAGTGGAGGTAAA+TGG + chr1.4:65400581-65400600 MS.gene036433:CDS 50.0%
GACTCCATCACCAAGATACC+CGG - chr1.4:65400800-65400819 None:intergenic 50.0%
GACTCGGAACAATCAGCTTG+AGG - chr1.4:65399692-65399711 None:intergenic 50.0%
GCCGGTGGAAGAATATCACT+TGG + chr1.4:65399470-65399489 MS.gene036433:CDS 50.0%
GCTAGCATACCTCTATCGCA+AGG - chr1.4:65399977-65399996 None:intergenic 50.0%
GGCACAAATTTACCTGGTGG+AGG + chr1.4:65400265-65400284 MS.gene036433:CDS 50.0%
GGGTTGCAGGTCCATTGAAT+GGG - chr1.4:65400444-65400463 None:intergenic 50.0%
GGTGGTAACTACTATGCCGA+CGG - chr1.4:65399825-65399844 None:intergenic 50.0%
GTAAAGGCTCCTCCTAATGC+TGG - chr1.4:65400397-65400416 None:intergenic 50.0%
GTGGCAGTAGTAACCAAGAC+AGG - chr1.4:65399612-65399631 None:intergenic 50.0%
TCATGCAGGGACTTACCTTC+AGG + chr1.4:65400684-65400703 MS.gene036433:CDS 50.0%
TCCTCACCAGAAAGCTCTGT+TGG - chr1.4:65400964-65400983 None:intergenic 50.0%
TCCTTCTCCTTTGGACCAGT+TGG - chr1.4:65400991-65401010 None:intergenic 50.0%
TCGGTGAACATGTCGGTGAT+TGG + chr1.4:65400500-65400519 MS.gene036433:CDS 50.0%
TGAAGGTAAGTCCCTGCATG+AGG - chr1.4:65400685-65400704 None:intergenic 50.0%
TGAGTGATCTACTCAGGTGG+CGG + chr1.4:65399443-65399462 MS.gene036433:intron 50.0%
TGGTTGCCTAACCCTCCAAA+GGG + chr1.4:65399791-65399810 MS.gene036433:CDS 50.0%
TTGGTTGCCTAACCCTCCAA+AGG + chr1.4:65399790-65399809 MS.gene036433:CDS 50.0%
! AACAGAGCTTTCTGGTGAGG+AGG + chr1.4:65400963-65400982 MS.gene036433:CDS 50.0%
! ACAGAGCTTTCTGGTGAGGA+GGG + chr1.4:65400964-65400983 MS.gene036433:CDS 50.0%
! CCGACGGCTTTATAACCCTT+TGG - chr1.4:65399809-65399828 None:intergenic 50.0%
! TCCAACAGAGCTTTCTGGTG+AGG + chr1.4:65400960-65400979 MS.gene036433:CDS 50.0%
AGGACACGTTCTTGTCGCTC+GGG + chr1.4:65399652-65399671 MS.gene036433:CDS 55.0%
CCTCTTCCACAATGGCCACA+AGG + chr1.4:65399004-65399023 MS.gene036433:CDS 55.0%
CCTTGTGGCCATTGTGGAAG+AGG - chr1.4:65399007-65399026 None:intergenic 55.0%
CTTCGCGTGAGCAACTTCAC+CGG + chr1.4:65400535-65400554 MS.gene036433:CDS 55.0%
GAGGACACGTTCTTGTCGCT+CGG + chr1.4:65399651-65399670 MS.gene036433:CDS 55.0%
GCAACGGCTGATCATTGGAG+TGG - chr1.4:65399631-65399650 None:intergenic 55.0%
GCAACTTCACCGGAGAGCTT+TGG + chr1.4:65400545-65400564 MS.gene036433:CDS 55.0%
GCCAACTGGTCCAAAGGAGA+AGG + chr1.4:65400987-65401006 MS.gene036433:CDS 55.0%
GGCCATTGTGGAAGAGGTGA+AGG - chr1.4:65399001-65399020 None:intergenic 55.0%
GGTGAAGTTGCTCACGCGAA+GGG - chr1.4:65400536-65400555 None:intergenic 55.0%
TCCAATGATCAGCCGTTGCG+AGG + chr1.4:65399632-65399651 MS.gene036433:CDS 55.0%
TCCTCGCAACGGCTGATCAT+TGG - chr1.4:65399636-65399655 None:intergenic 55.0%
! CAGAGCTTTCTGGTGAGGAG+GGG + chr1.4:65400965-65400984 MS.gene036433:CDS 55.0%
!! ACATGCCATCATCGGTGTCG+TGG + chr1.4:65400176-65400195 MS.gene036433:CDS 55.0%
!! TACTCAGGTGGCGGTTTTGC+CGG + chr1.4:65399452-65399471 MS.gene036433:intron 55.0%
CGGTGAAGTTGCTCACGCGA+AGG - chr1.4:65400537-65400556 None:intergenic 60.0%
GCTGCCGGGTATCTTGGTGA+TGG + chr1.4:65400793-65400812 MS.gene036433:CDS 60.0%
GGAGGGGCCAACTGGTCCAA+AGG + chr1.4:65400981-65401000 MS.gene036433:CDS 65.0%
TCTGGTGAGGAGGGGCCAAC+TGG + chr1.4:65400973-65400992 MS.gene036433:CDS 65.0%
!! TCAGGTGGCGGTTTTGCCGG+TGG + chr1.4:65399455-65399474 MS.gene036433:intron 65.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 65398923 65401038 65398923 ID=MS.gene036433
chr1.4 mRNA 65398923 65401038 65398923 ID=MS.gene036433.t1;Parent=MS.gene036433
chr1.4 exon 65398923 65399025 65398923 ID=MS.gene036433.t1.exon1;Parent=MS.gene036433.t1
chr1.4 CDS 65398923 65399025 65398923 ID=cds.MS.gene036433.t1;Parent=MS.gene036433.t1
chr1.4 exon 65399459 65401038 65399459 ID=MS.gene036433.t1.exon2;Parent=MS.gene036433.t1
chr1.4 CDS 65399459 65401038 65399459 ID=cds.MS.gene036433.t1;Parent=MS.gene036433.t1
Gene Sequence

>MS.gene036433

ATGTTTGGTTGTGAGTGTTTTTGTTGGGATAGTTTCCCAGAATTTTTTGACTCTGATCCACTTCCCTTTTCTCTTCCTTCACCTCTTCCACAATGGCCACAAGGTATTCTTTTTTTCTTTCTATTTAATCATCAACTCAAACTAGATAGACACTTTTATTACTGTTTTCTTTCTATTTTTTGGAGAGATTATTCAATCATAATTTACTTTTTTAATACTATATATTTGTACTGTTTTTATTGATCTTATTGTCATTAATTTTGGAAATTGTAGTATTTTTTGCAGATATTGGGTTTCCTTAATTTTCAAGCTTAGTAATTGATTTTGTTTGATATTGATGCAAATAAGTATCTTTATTTCATATTTTGCTGTGGCAATATTTTACAAAGTTCTTACTATATACATCAAAATTGAATTTTTACTATGAATACTATTTGATTTCTTTTTGGTTATTGGCTATGTATGATGTCAAATGTTTGTGACTCAAATTATCTTATTTATCAACTAAGTACTAAGTTTGTGAGTGATCTACTCAGGTGGCGGTTTTGCCGGTGGAAGAATATCACTTGGGAAAATACAAGTTACAAAAGTAAACAAGTTTGAGAAAGTTTGGAGATGCACAAATTCTAACGGAAAGGCACTAGGTTTTACGTTTTATAGACCTTTGGAGATTCCAGATGGATTTTCCTGTCTTGGTTACTACTGCCACTCCAATGATCAGCCGTTGCGAGGACACGTTCTTGTCGCTCGGGAGACTACTTACGAACCTCAAGCTGATTGTTCCGAGTCAGAATCCCCAGCTCTTAAAAAGCCACTTAATTACTCATTAATATGGTGTATGGACTCACATGATGAATGTGTTTACTTTTGGTTGCCTAACCCTCCAAAGGGTTATAAAGCCGTCGGCATAGTAGTTACCACCAATCCAGATGAACCGAAAGTTGAAGAAGTTCGATGCGTGCGAACCGATCTAACAGAAGTTTGCGAGACATCTGATCTCTTACTAACAATAAAGTCGAAGAAAAATTCTTTCCAGGTTTGGAATACACAACCTTGCGATAGAGGTATGCTAGCTAGAGGTGTATCTGTTGGAACATTCTTCTGTGGCACCTACTTTGATTCTGAACAAGTGGTTGATGTTGTGTGTTTGAAGAATCTTGATTCTTCGTTGCACGCAATGCCGAATCTCAACCAGATTCATGCTCTTATTGAGCATTACGGGCCAACGGTATATTTTCATCCTGATGAGAAATACATGCCATCATCGGTGTCGTGGTTTTTCAAGAATGGAGCAATTTTGTATACTGCGGGTAATGCAAAGGGTAAAGCTATAGATTATCACGGCACAAATTTACCTGGTGGAGGATATAATGATGGTGCGTTTTGGATTGATTTGCCTACCGATGAAGATGCGAGAAATAATCTTAAGAAGGGAAACATAGAGAGTGCGGAACTCTATGTTCATGTAAAACCAGCATTAGGAGGAGCCTTTACTGATATTGCAATGTGGGTTTTTTGCCCATTCAATGGACCTGCAACCCTTAAAGTGTCATTGATGAACATTGAGATGAACAAGATCGGTGAACATGTCGGTGATTGGGAGCACTTCACCCTTCGCGTGAGCAACTTCACCGGAGAGCTTTGGTCTGTTTTTTTCTCTGAGCACAGTGGAGGTAAATGGGTTAATGCATTCGATTTGGAGTTTATTCAGGAGAATAAACCAATAGTTTATTCATCAAGACATGGGCATGCTAGCTATCCTCATGCAGGGACTTACCTTCAGGGATCATCCAAACTTGGAATAGGAGTTCGCAACGATGCTGCTAAAAGTAATTTTATTCTGGATTCGAGCTTTAGATACAAGATTGTTGCTGCCGGGTATCTTGGTGATGGAGTCATTACAGAACCATGTTGGTTGCAATATATGAGAGAGTGGGGTCCTACCATTGTATATGATTCACGTTCTGAAATAGAGAAGATAATAGACATGCTTCCAATATTTGTTAGGTTTTCTGTGGAGAACCTTTTTGAATTATTTCCAACAGAGCTTTCTGGTGAGGAGGGGCCAACTGGTCCAAAGGAGAAGGACAATTGGCTAGGTGATGAATATTGCTAG

Protein sequence

>MS.gene036433.t1

MFGCECFCWDSFPEFFDSDPLPFSLPSPLPQWPQGGGFAGGRISLGKIQVTKVNKFEKVWRCTNSNGKALGFTFYRPLEIPDGFSCLGYYCHSNDQPLRGHVLVARETTYEPQADCSESESPALKKPLNYSLIWCMDSHDECVYFWLPNPPKGYKAVGIVVTTNPDEPKVEEVRCVRTDLTEVCETSDLLLTIKSKKNSFQVWNTQPCDRGMLARGVSVGTFFCGTYFDSEQVVDVVCLKNLDSSLHAMPNLNQIHALIEHYGPTVYFHPDEKYMPSSVSWFFKNGAILYTAGNAKGKAIDYHGTNLPGGGYNDGAFWIDLPTDEDARNNLKKGNIESAELYVHVKPALGGAFTDIAMWVFCPFNGPATLKVSLMNIEMNKIGEHVGDWEHFTLRVSNFTGELWSVFFSEHSGGKWVNAFDLEFIQENKPIVYSSRHGHASYPHAGTYLQGSSKLGIGVRNDAAKSNFILDSSFRYKIVAAGYLGDGVITEPCWLQYMREWGPTIVYDSRSEIEKIIDMLPIFVRFSVENLFELFPTELSGEEGPTGPKEKDNWLGDEYC