Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene036433.t1 | XP_003590981.1 | 98 | 560 | 11 | 0 | 1 | 560 | 1 | 560 | 2.60E-304 | 1053.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene036433.t1 | G7I6T7 | 98.0 | 560 | 11 | 0 | 1 | 560 | 1 | 560 | 1.9e-304 | 1053.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene60888 | MS.gene036433 | PPI |
MS.gene000193 | MS.gene036433 | PPI |
MS.gene60881 | MS.gene036433 | PPI |
MS.gene60886 | MS.gene036433 | PPI |
MS.gene042257 | MS.gene036433 | PPI |
MS.gene000192 | MS.gene036433 | PPI |
MS.gene012606 | MS.gene036433 | PPI |
MS.gene061203 | MS.gene036433 | PPI |
MS.gene60887 | MS.gene036433 | PPI |
MS.gene043858 | MS.gene036433 | PPI |
MS.gene60889 | MS.gene036433 | PPI |
MS.gene043855 | MS.gene036433 | PPI |
MS.gene60884 | MS.gene036433 | PPI |
MS.gene000191 | MS.gene036433 | PPI |
MS.gene043859 | MS.gene036433 | PPI |
MS.gene33537 | MS.gene036433 | PPI |
MS.gene000190 | MS.gene036433 | PPI |
MS.gene60883 | MS.gene036433 | PPI |
MS.gene042258 | MS.gene036433 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene036433.t1 | MTR_1g080370 | 98.214 | 560 | 10 | 0 | 1 | 560 | 1 | 560 | 0.0 | 1144 |
MS.gene036433.t1 | MTR_1g080410 | 98.214 | 560 | 10 | 0 | 1 | 560 | 1 | 560 | 0.0 | 1144 |
MS.gene036433.t1 | MTR_5g007860 | 56.491 | 570 | 231 | 7 | 4 | 558 | 38 | 605 | 0.0 | 665 |
MS.gene036433.t1 | MTR_4g077620 | 55.360 | 569 | 239 | 8 | 1 | 558 | 3 | 567 | 0.0 | 657 |
MS.gene036433.t1 | MTR_2g062430 | 47.434 | 565 | 265 | 12 | 6 | 558 | 8 | 552 | 3.22e-175 | 506 |
MS.gene036433.t1 | MTR_2g067640 | 45.471 | 552 | 264 | 10 | 20 | 558 | 13 | 540 | 6.91e-170 | 493 |
MS.gene036433.t1 | MTR_2g062410 | 46.014 | 552 | 271 | 10 | 18 | 558 | 50 | 585 | 1.97e-167 | 488 |
MS.gene036433.t1 | MTR_2g062370 | 44.991 | 549 | 273 | 9 | 23 | 558 | 57 | 589 | 9.59e-161 | 471 |
MS.gene036433.t1 | MTR_4g131710 | 44.646 | 551 | 274 | 10 | 23 | 558 | 51 | 585 | 2.72e-160 | 470 |
MS.gene036433.t1 | MTR_2g062380 | 45.810 | 537 | 261 | 9 | 35 | 558 | 40 | 559 | 5.37e-154 | 452 |
MS.gene036433.t1 | MTR_2g062340 | 44.505 | 546 | 244 | 9 | 23 | 558 | 20 | 516 | 4.34e-151 | 444 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene036433.t1 | AT3G04350 | 64.685 | 572 | 185 | 7 | 1 | 560 | 1 | 567 | 0.0 | 764 |
MS.gene036433.t1 | AT5G18490 | 63.298 | 564 | 187 | 8 | 4 | 560 | 3 | 553 | 0.0 | 735 |
MS.gene036433.t1 | AT3G04350 | 65.234 | 535 | 172 | 6 | 35 | 560 | 16 | 545 | 0.0 | 724 |
MS.gene036433.t1 | AT1G04090 | 53.899 | 577 | 244 | 9 | 1 | 560 | 1 | 572 | 0.0 | 650 |
MS.gene036433.t1 | AT5G43950 | 53.578 | 573 | 242 | 9 | 1 | 558 | 1 | 564 | 0.0 | 632 |
MS.gene036433.t1 | AT2G44260 | 45.588 | 544 | 268 | 9 | 23 | 558 | 29 | 552 | 5.45e-167 | 486 |
MS.gene036433.t1 | AT2G44230 | 45.155 | 547 | 264 | 10 | 23 | 558 | 20 | 541 | 3.29e-166 | 483 |
MS.gene036433.t1 | AT2G44260 | 45.489 | 532 | 262 | 9 | 35 | 558 | 71 | 582 | 1.24e-161 | 473 |
MS.gene036433.t1 | AT3G01870 | 41.355 | 561 | 289 | 13 | 15 | 558 | 46 | 583 | 1.66e-139 | 416 |
MS.gene036433.t1 | AT3G01880 | 41.637 | 562 | 288 | 14 | 15 | 558 | 50 | 589 | 1.94e-138 | 414 |
Find 139 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTTCATCAATGACACTTTA+AGG | 0.107306 | 1.4:-65400462 | None:intergenic |
TAAACAAGTTTGAGAAAGTT+TGG | 0.235719 | 1.4:+65399513 | MS.gene036433:CDS |
CTGAGCACAGTGGAGGTAAA+TGG | 0.247800 | 1.4:+65400581 | MS.gene036433:CDS |
TTATTTCCAACAGAGCTTTC+TGG | 0.254169 | 1.4:+65400955 | MS.gene036433:CDS |
CACTTAATTACTCATTAATA+TGG | 0.264581 | 1.4:+65399735 | MS.gene036433:CDS |
AGCCAATTGTCCTTCTCCTT+TGG | 0.307063 | 1.4:-65400997 | None:intergenic |
GCGAACTCCTATTCCAAGTT+TGG | 0.314359 | 1.4:-65400713 | None:intergenic |
TGGGTTTGGTAAGGGATGTT+TGG | 0.319083 | 1.4:+65398908 | None:intergenic |
TGTCTTGATGAATAAACTAT+TGG | 0.322222 | 1.4:-65400643 | None:intergenic |
ACAGAAAACCTAACAAATAT+TGG | 0.329471 | 1.4:-65400916 | None:intergenic |
GATATAATGATGGTGCGTTT+TGG | 0.329648 | 1.4:+65400287 | MS.gene036433:CDS |
CATCGAACTTCTTCAACTTT+CGG | 0.340671 | 1.4:-65399857 | None:intergenic |
TCTTCAACTTTCGGTTCATC+TGG | 0.342527 | 1.4:-65399848 | None:intergenic |
ATGGGTTAATGCATTCGATT+TGG | 0.345620 | 1.4:+65400600 | MS.gene036433:CDS |
ATTCGATTTGGAGTTTATTC+AGG | 0.347982 | 1.4:+65400612 | MS.gene036433:CDS |
ATGATGAATGTGTTTACTTT+TGG | 0.348745 | 1.4:+65399771 | MS.gene036433:CDS |
TCCTTCTCCTTTGGACCAGT+TGG | 0.349557 | 1.4:-65400988 | None:intergenic |
ACATGCTTCCAATATTTGTT+AGG | 0.353415 | 1.4:+65400908 | MS.gene036433:CDS |
CATGCTCTTATTGAGCATTA+CGG | 0.358178 | 1.4:+65400121 | MS.gene036433:CDS |
AATGACACTTTAAGGGTTGC+AGG | 0.360391 | 1.4:-65400454 | None:intergenic |
ATGCTCTTATTGAGCATTAC+GGG | 0.370883 | 1.4:+65400122 | MS.gene036433:CDS |
GTTCATCAATGACACTTTAA+GGG | 0.377575 | 1.4:-65400461 | None:intergenic |
TCTGGTGAGGAGGGGCCAAC+TGG | 0.379305 | 1.4:+65400973 | MS.gene036433:CDS |
AACTTTCGGTTCATCTGGAT+TGG | 0.384698 | 1.4:-65399843 | None:intergenic |
TTACTCATTAATATGGTGTA+TGG | 0.386638 | 1.4:+65399742 | MS.gene036433:CDS |
CTGTTGGAAATAATTCAAAA+AGG | 0.390774 | 1.4:-65400945 | None:intergenic |
AGAGGTGAAGGAAGAGAAAA+GGG | 0.395917 | 1.4:-65398986 | None:intergenic |
AAGAGGTGAAGGAAGAGAAA+AGG | 0.400057 | 1.4:-65398987 | None:intergenic |
TCATGCAGGGACTTACCTTC+AGG | 0.415789 | 1.4:+65400684 | MS.gene036433:CDS |
CATATTAATGAGTAATTAAG+TGG | 0.423515 | 1.4:-65399734 | None:intergenic |
AGGGTTGCAGGTCCATTGAA+TGG | 0.426014 | 1.4:-65400442 | None:intergenic |
TCCTCGCAACGGCTGATCAT+TGG | 0.426252 | 1.4:-65399633 | None:intergenic |
GTTCATGTAAAACCAGCATT+AGG | 0.426763 | 1.4:+65400382 | MS.gene036433:CDS |
GCTCAATAAGAGCATGAATC+TGG | 0.427486 | 1.4:-65400114 | None:intergenic |
ATTGTTGCTGCCGGGTATCT+TGG | 0.427869 | 1.4:+65400787 | MS.gene036433:CDS |
CCGACGGCTTTATAACCCTT+TGG | 0.428360 | 1.4:-65399806 | None:intergenic |
CTTCAGGGATCATCCAAACT+TGG | 0.432488 | 1.4:+65400700 | MS.gene036433:CDS |
CGGTGAACATGTCGGTGATT+GGG | 0.432674 | 1.4:+65400501 | MS.gene036433:CDS |
TCGGTGAACATGTCGGTGAT+TGG | 0.434338 | 1.4:+65400500 | MS.gene036433:CDS |
GCAACTTCACCGGAGAGCTT+TGG | 0.443367 | 1.4:+65400545 | MS.gene036433:CDS |
TTATAACCCTTTGGAGGGTT+AGG | 0.448233 | 1.4:-65399797 | None:intergenic |
GGATCATCCAAACTTGGAAT+AGG | 0.450282 | 1.4:+65400706 | MS.gene036433:CDS |
GATGGCATGTATTTCTCATC+AGG | 0.457793 | 1.4:-65400163 | None:intergenic |
CCCAAGTGATATTCTTCCAC+CGG | 0.460813 | 1.4:-65399471 | None:intergenic |
TCCTCACCAGAAAGCTCTGT+TGG | 0.461764 | 1.4:-65400961 | None:intergenic |
GCATGAATCTGGTTGAGATT+CGG | 0.468325 | 1.4:-65400103 | None:intergenic |
AATACACAACCTTGCGATAG+AGG | 0.468770 | 1.4:+65399965 | MS.gene036433:CDS |
CCAAGACAGGAAAATCCATC+TGG | 0.469039 | 1.4:-65399596 | None:intergenic |
GAGGACACGTTCTTGTCGCT+CGG | 0.471944 | 1.4:+65399651 | MS.gene036433:CDS |
TGAGCACAGTGGAGGTAAAT+GGG | 0.475593 | 1.4:+65400582 | MS.gene036433:CDS |
CTTTACTGATATTGCAATGT+GGG | 0.475927 | 1.4:+65400411 | MS.gene036433:CDS |
GAAGGAAGAGAAAAGGGAAG+TGG | 0.478043 | 1.4:-65398980 | None:intergenic |
TGCGAGAAATAATCTTAAGA+AGG | 0.480833 | 1.4:+65400333 | MS.gene036433:CDS |
ACGGCTTTATAACCCTTTGG+AGG | 0.486012 | 1.4:-65399803 | None:intergenic |
TTTCGGTTCATCTGGATTGG+TGG | 0.487936 | 1.4:-65399840 | None:intergenic |
GTCCAAAGGAGAAGGACAAT+TGG | 0.490950 | 1.4:+65400995 | MS.gene036433:CDS |
GGGTTGCAGGTCCATTGAAT+GGG | 0.500640 | 1.4:-65400441 | None:intergenic |
CTACTTTGATTCTGAACAAG+TGG | 0.505519 | 1.4:+65400033 | MS.gene036433:CDS |
CTCGCAAACTTCTGTTAGAT+CGG | 0.508339 | 1.4:-65399888 | None:intergenic |
CGGTGAAGTTGCTCACGCGA+AGG | 0.508371 | 1.4:-65400534 | None:intergenic |
CATGCTAGCTATCCTCATGC+AGG | 0.510869 | 1.4:+65400670 | MS.gene036433:CDS |
CCTTGTGGCCATTGTGGAAG+AGG | 0.512962 | 1.4:-65399004 | None:intergenic |
CCACATTGCAATATCAGTAA+AGG | 0.513990 | 1.4:-65400410 | None:intergenic |
CTAGCTAGAGGTGTATCTGT+TGG | 0.516741 | 1.4:+65399992 | MS.gene036433:CDS |
TTGGTTGCCTAACCCTCCAA+AGG | 0.523651 | 1.4:+65399790 | MS.gene036433:CDS |
GATACAAGATTGTTGCTGCC+GGG | 0.529740 | 1.4:+65400779 | MS.gene036433:CDS |
CATGCAGGGACTTACCTTCA+GGG | 0.530671 | 1.4:+65400685 | MS.gene036433:CDS |
AACAGAGCTTTCTGGTGAGG+AGG | 0.540070 | 1.4:+65400963 | MS.gene036433:CDS |
GTATACTGCGGGTAATGCAA+AGG | 0.543009 | 1.4:+65400222 | MS.gene036433:CDS |
ACAGAGCTTTCTGGTGAGGA+GGG | 0.543440 | 1.4:+65400964 | MS.gene036433:CDS |
GCCGGTGGAAGAATATCACT+TGG | 0.543957 | 1.4:+65399470 | MS.gene036433:CDS |
GTAAAGGCTCCTCCTAATGC+TGG | 0.544725 | 1.4:-65400394 | None:intergenic |
AGAATACCTTGTGGCCATTG+TGG | 0.547018 | 1.4:-65399010 | None:intergenic |
AAGAGCTGGGGATTCTGACT+CGG | 0.549133 | 1.4:-65399705 | None:intergenic |
AGGACACGTTCTTGTCGCTC+GGG | 0.549143 | 1.4:+65399652 | MS.gene036433:CDS |
AATTCTAACGGAAAGGCACT+AGG | 0.549895 | 1.4:+65399545 | MS.gene036433:CDS |
AGACCTTTGGAGATTCCAGA+TGG | 0.551683 | 1.4:+65399581 | MS.gene036433:CDS |
TTCCTTCACCTCTTCCACAA+TGG | 0.552183 | 1.4:+65398996 | MS.gene036433:CDS |
AGATACAAGATTGTTGCTGC+CGG | 0.552734 | 1.4:+65400778 | MS.gene036433:CDS |
CGGCTTTATAACCCTTTGGA+GGG | 0.557691 | 1.4:-65399802 | None:intergenic |
GACTCCATCACCAAGATACC+CGG | 0.558460 | 1.4:-65400797 | None:intergenic |
GGTGAAGTTGCTCACGCGAA+GGG | 0.560176 | 1.4:-65400533 | None:intergenic |
ATTATTTCTCGCATCTTCAT+CGG | 0.561997 | 1.4:-65400323 | None:intergenic |
CGTGAATCATATACAATGGT+AGG | 0.564534 | 1.4:-65400862 | None:intergenic |
TCCAACAGAGCTTTCTGGTG+AGG | 0.565118 | 1.4:+65400960 | MS.gene036433:CDS |
GCGAGAAATAATCTTAAGAA+GGG | 0.567421 | 1.4:+65400334 | MS.gene036433:CDS |
GACTCGGAACAATCAGCTTG+AGG | 0.567833 | 1.4:-65399689 | None:intergenic |
TTTCTCGCATCTTCATCGGT+AGG | 0.570074 | 1.4:-65400319 | None:intergenic |
TATACTGCGGGTAATGCAAA+GGG | 0.571900 | 1.4:+65400223 | MS.gene036433:CDS |
CATGTAAAACCAGCATTAGG+AGG | 0.572269 | 1.4:+65400385 | MS.gene036433:CDS |
AACATTGAGATGAACAAGAT+CGG | 0.572272 | 1.4:+65400481 | MS.gene036433:CDS |
TGGAGATGCACAAATTCTAA+CGG | 0.580046 | 1.4:+65399533 | MS.gene036433:CDS |
TGGTTGCCTAACCCTCCAAA+GGG | 0.582899 | 1.4:+65399791 | MS.gene036433:CDS |
CTTCGCGTGAGCAACTTCAC+CGG | 0.582952 | 1.4:+65400535 | MS.gene036433:CDS |
TCCAATGATCAGCCGTTGCG+AGG | 0.585934 | 1.4:+65399632 | MS.gene036433:CDS |
GCCAACTGGTCCAAAGGAGA+AGG | 0.588714 | 1.4:+65400987 | MS.gene036433:CDS |
GTGGCAGTAGTAACCAAGAC+AGG | 0.592567 | 1.4:-65399609 | None:intergenic |
AAGGTTGTGTATTCCAAACC+TGG | 0.594362 | 1.4:-65399955 | None:intergenic |
AATCCATCTGGAATCTCCAA+AGG | 0.594832 | 1.4:-65399584 | None:intergenic |
ACATGCCATCATCGGTGTCG+TGG | 0.595421 | 1.4:+65400176 | MS.gene036433:CDS |
TATTGAGCATTACGGGCCAA+CGG | 0.595833 | 1.4:+65400129 | MS.gene036433:CDS |
TCTGTTGGAACATTCTTCTG+TGG | 0.597430 | 1.4:+65400007 | MS.gene036433:CDS |
CTCATATATTGCAACCAACA+TGG | 0.598495 | 1.4:-65400829 | None:intergenic |
CCTCTTCCACAATGGCCACA+AGG | 0.602749 | 1.4:+65399004 | MS.gene036433:CDS |
GGCACAAATTTACCTGGTGG+AGG | 0.603301 | 1.4:+65400265 | MS.gene036433:CDS |
GGTTGCAATATATGAGAGAG+TGG | 0.604682 | 1.4:+65400836 | MS.gene036433:CDS |
GCTGCCGGGTATCTTGGTGA+TGG | 0.606924 | 1.4:+65400793 | MS.gene036433:CDS |
TGAGAAATACATGCCATCAT+CGG | 0.607689 | 1.4:+65400168 | MS.gene036433:CDS |
TATCACGGCACAAATTTACC+TGG | 0.610377 | 1.4:+65400259 | MS.gene036433:CDS |
AAGGAGAAGGACAATTGGCT+AGG | 0.611868 | 1.4:+65401000 | MS.gene036433:CDS |
TAGTTTATTCATCAAGACAT+GGG | 0.614112 | 1.4:+65400647 | MS.gene036433:CDS |
CCAAAGGGTTATAAAGCCGT+CGG | 0.615266 | 1.4:+65399806 | MS.gene036433:CDS |
GGAGGGGCCAACTGGTCCAA+AGG | 0.615580 | 1.4:+65400981 | MS.gene036433:CDS |
CCTGGTGGAGGATATAATGA+TGG | 0.615594 | 1.4:+65400277 | MS.gene036433:CDS |
TCAGGATGAAAATATACCGT+TGG | 0.617396 | 1.4:-65400145 | None:intergenic |
GGTGGTAACTACTATGCCGA+CGG | 0.618472 | 1.4:-65399822 | None:intergenic |
CAAGTTTGGATGATCCCTGA+AGG | 0.618933 | 1.4:-65400699 | None:intergenic |
GGTAAAGCTATAGATTATCA+CGG | 0.619614 | 1.4:+65400244 | MS.gene036433:CDS |
ATGCACAAATTCTAACGGAA+AGG | 0.619830 | 1.4:+65399538 | MS.gene036433:CDS |
CCTTTACTGATATTGCAATG+TGG | 0.624376 | 1.4:+65400410 | MS.gene036433:CDS |
CACGGCACAAATTTACCTGG+TGG | 0.625316 | 1.4:+65400262 | MS.gene036433:CDS |
CCATCATTATATCCTCCACC+AGG | 0.627153 | 1.4:-65400277 | None:intergenic |
GTTGCAATATATGAGAGAGT+GGG | 0.627285 | 1.4:+65400837 | MS.gene036433:CDS |
GGCCATTGTGGAAGAGGTGA+AGG | 0.627997 | 1.4:-65398998 | None:intergenic |
GAAGGGAAACATAGAGAGTG+CGG | 0.636222 | 1.4:+65400351 | MS.gene036433:CDS |
TGAAGGTAAGTCCCTGCATG+AGG | 0.636865 | 1.4:-65400682 | None:intergenic |
ATAGTTTATTCATCAAGACA+TGG | 0.637290 | 1.4:+65400646 | MS.gene036433:CDS |
ACAAGAACGTGTCCTCGCAA+CGG | 0.637737 | 1.4:-65399644 | None:intergenic |
AACAAGATCGGTGAACATGT+CGG | 0.653405 | 1.4:+65400493 | MS.gene036433:CDS |
CACTTGTTCAGAATCAAAGT+AGG | 0.653816 | 1.4:-65400032 | None:intergenic |
AGAACGTGAATCATATACAA+TGG | 0.654517 | 1.4:-65400866 | None:intergenic |
GCTAGCATACCTCTATCGCA+AGG | 0.655324 | 1.4:-65399974 | None:intergenic |
ATGCTAGCTATCCTCATGCA+GGG | 0.655682 | 1.4:+65400671 | MS.gene036433:CDS |
CAGAGCTTTCTGGTGAGGAG+GGG | 0.657357 | 1.4:+65400965 | MS.gene036433:CDS |
CCGGTGGAAGAATATCACTT+GGG | 0.660476 | 1.4:+65399471 | MS.gene036433:CDS |
GCAACGGCTGATCATTGGAG+TGG | 0.664542 | 1.4:-65399628 | None:intergenic |
GAGTCATTACAGAACCATGT+TGG | 0.666649 | 1.4:+65400815 | MS.gene036433:CDS |
TTGCAATATATGAGAGAGTG+GGG | 0.676061 | 1.4:+65400838 | MS.gene036433:CDS |
GATAGAGGTATGCTAGCTAG+AGG | 0.685865 | 1.4:+65399980 | MS.gene036433:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AATACTATTTGATTTCTTTT+TGG | + | chr1.4:65399349-65399368 | MS.gene036433:intron | 15.0% |
!! | ATTACTAAGCTTGAAAATTA+AGG | - | chr1.4:65399222-65399241 | None:intergenic | 20.0% |
!! | CACTTAATTACTCATTAATA+TGG | + | chr1.4:65399735-65399754 | MS.gene036433:CDS | 20.0% |
!! | CATATTAATGAGTAATTAAG+TGG | - | chr1.4:65399737-65399756 | None:intergenic | 20.0% |
!!! | ACTGTTTTCTTTCTATTTTT+TGG | + | chr1.4:65399083-65399102 | MS.gene036433:intron | 20.0% |
!!! | GATCTTATTGTCATTAATTT+TGG | + | chr1.4:65399164-65399183 | MS.gene036433:intron | 20.0% |
!!! | TAGTATTTTTTGCAGATATT+GGG | + | chr1.4:65399193-65399212 | MS.gene036433:intron | 20.0% |
!!! | TGCTAAAAGTAATTTTATTC+TGG | + | chr1.4:65400744-65400763 | MS.gene036433:CDS | 20.0% |
!!! | TTTGATTTCTTTTTGGTTAT+TGG | + | chr1.4:65399356-65399375 | MS.gene036433:intron | 20.0% |
! | AAGAAAAAAAGAATACCTTG+TGG | - | chr1.4:65399022-65399041 | None:intergenic | 25.0% |
! | ACAGAAAACCTAACAAATAT+TGG | - | chr1.4:65400919-65400938 | None:intergenic | 25.0% |
! | ATAGTTTATTCATCAAGACA+TGG | + | chr1.4:65400646-65400665 | MS.gene036433:CDS | 25.0% |
! | CTGTTGGAAATAATTCAAAA+AGG | - | chr1.4:65400948-65400967 | None:intergenic | 25.0% |
! | TAAACAAGTTTGAGAAAGTT+TGG | + | chr1.4:65399513-65399532 | MS.gene036433:CDS | 25.0% |
! | TAGTTTATTCATCAAGACAT+GGG | + | chr1.4:65400647-65400666 | MS.gene036433:CDS | 25.0% |
! | TGTCTTGATGAATAAACTAT+TGG | - | chr1.4:65400646-65400665 | None:intergenic | 25.0% |
! | TTACTCATTAATATGGTGTA+TGG | + | chr1.4:65399742-65399761 | MS.gene036433:CDS | 25.0% |
!! | ATGATGAATGTGTTTACTTT+TGG | + | chr1.4:65399771-65399790 | MS.gene036433:CDS | 25.0% |
!! | TTTTACGTTTTATAGACCTT+TGG | + | chr1.4:65399568-65399587 | MS.gene036433:CDS | 25.0% |
!!! | AATATTTGTTAGGTTTTCTG+TGG | + | chr1.4:65400918-65400937 | MS.gene036433:CDS | 25.0% |
!!! | CTTTATTTCATATTTTGCTG+TGG | + | chr1.4:65399274-65399293 | MS.gene036433:intron | 25.0% |
!!! | GTAGTATTTTTTGCAGATAT+TGG | + | chr1.4:65399192-65399211 | MS.gene036433:intron | 25.0% |
AACATTGAGATGAACAAGAT+CGG | + | chr1.4:65400481-65400500 | MS.gene036433:CDS | 30.0% | |
ACATGCTTCCAATATTTGTT+AGG | + | chr1.4:65400908-65400927 | MS.gene036433:CDS | 30.0% | |
AGAAAAATTCTTTCCAGGTT+TGG | + | chr1.4:65399942-65399961 | MS.gene036433:CDS | 30.0% | |
AGAACGTGAATCATATACAA+TGG | - | chr1.4:65400869-65400888 | None:intergenic | 30.0% | |
CTTTACTGATATTGCAATGT+GGG | + | chr1.4:65400411-65400430 | MS.gene036433:CDS | 30.0% | |
GATCAGAGTCAAAAAATTCT+GGG | - | chr1.4:65398961-65398980 | None:intergenic | 30.0% | |
GCGAGAAATAATCTTAAGAA+GGG | + | chr1.4:65400334-65400353 | MS.gene036433:CDS | 30.0% | |
GGTAAAGCTATAGATTATCA+CGG | + | chr1.4:65400244-65400263 | MS.gene036433:CDS | 30.0% | |
GTTCATCAATGACACTTTAA+GGG | - | chr1.4:65400464-65400483 | None:intergenic | 30.0% | |
TGCGAGAAATAATCTTAAGA+AGG | + | chr1.4:65400333-65400352 | MS.gene036433:CDS | 30.0% | |
TGTTCATCAATGACACTTTA+AGG | - | chr1.4:65400465-65400484 | None:intergenic | 30.0% | |
! | ATTATTTCTCGCATCTTCAT+CGG | - | chr1.4:65400326-65400345 | None:intergenic | 30.0% |
!! | ATTCGATTTGGAGTTTATTC+AGG | + | chr1.4:65400612-65400631 | MS.gene036433:CDS | 30.0% |
ATGCACAAATTCTAACGGAA+AGG | + | chr1.4:65399538-65399557 | MS.gene036433:CDS | 35.0% | |
ATGCTCTTATTGAGCATTAC+GGG | + | chr1.4:65400122-65400141 | MS.gene036433:CDS | 35.0% | |
CACTTGTTCAGAATCAAAGT+AGG | - | chr1.4:65400035-65400054 | None:intergenic | 35.0% | |
CATCGAACTTCTTCAACTTT+CGG | - | chr1.4:65399860-65399879 | None:intergenic | 35.0% | |
CATGCTCTTATTGAGCATTA+CGG | + | chr1.4:65400121-65400140 | MS.gene036433:CDS | 35.0% | |
CCACATTGCAATATCAGTAA+AGG | - | chr1.4:65400413-65400432 | None:intergenic | 35.0% | |
CCTTTACTGATATTGCAATG+TGG | + | chr1.4:65400410-65400429 | MS.gene036433:CDS | 35.0% | |
CGTGAATCATATACAATGGT+AGG | - | chr1.4:65400865-65400884 | None:intergenic | 35.0% | |
CTACTTTGATTCTGAACAAG+TGG | + | chr1.4:65400033-65400052 | MS.gene036433:CDS | 35.0% | |
CTCATATATTGCAACCAACA+TGG | - | chr1.4:65400832-65400851 | None:intergenic | 35.0% | |
GGATCAGAGTCAAAAAATTC+TGG | - | chr1.4:65398962-65398981 | None:intergenic | 35.0% | |
GTCGAAGAAAAATTCTTTCC+AGG | + | chr1.4:65399937-65399956 | MS.gene036433:CDS | 35.0% | |
GTTCATGTAAAACCAGCATT+AGG | + | chr1.4:65400382-65400401 | MS.gene036433:CDS | 35.0% | |
GTTGCAATATATGAGAGAGT+GGG | + | chr1.4:65400837-65400856 | MS.gene036433:CDS | 35.0% | |
TCAGGATGAAAATATACCGT+TGG | - | chr1.4:65400148-65400167 | None:intergenic | 35.0% | |
TGAGAAATACATGCCATCAT+CGG | + | chr1.4:65400168-65400187 | MS.gene036433:CDS | 35.0% | |
TGGAGATGCACAAATTCTAA+CGG | + | chr1.4:65399533-65399552 | MS.gene036433:CDS | 35.0% | |
TTATTTCCAACAGAGCTTTC+TGG | + | chr1.4:65400955-65400974 | MS.gene036433:CDS | 35.0% | |
TTGCAATATATGAGAGAGTG+GGG | + | chr1.4:65400838-65400857 | MS.gene036433:CDS | 35.0% | |
! | ATGGGTTAATGCATTCGATT+TGG | + | chr1.4:65400600-65400619 | MS.gene036433:CDS | 35.0% |
! | TGGAGCAATTTTGTATACTG+CGG | + | chr1.4:65400210-65400229 | MS.gene036433:CDS | 35.0% |
!! | GATATAATGATGGTGCGTTT+TGG | + | chr1.4:65400287-65400306 | MS.gene036433:CDS | 35.0% |
!! | TAAGTGGCTTTTTAAGAGCT+GGG | - | chr1.4:65399721-65399740 | None:intergenic | 35.0% |
!! | TGGTTGTGAGTGTTTTTGTT+GGG | + | chr1.4:65398928-65398947 | MS.gene036433:CDS | 35.0% |
!! | TTAAGTGGCTTTTTAAGAGC+TGG | - | chr1.4:65399722-65399741 | None:intergenic | 35.0% |
!! | TTGGTTGTGAGTGTTTTTGT+TGG | + | chr1.4:65398927-65398946 | MS.gene036433:CDS | 35.0% |
AAAAACAGACCAAAGCTCTC+CGG | - | chr1.4:65400557-65400576 | None:intergenic | 40.0% | |
AACAAGATCGGTGAACATGT+CGG | + | chr1.4:65400493-65400512 | MS.gene036433:CDS | 40.0% | |
AACTTTCGGTTCATCTGGAT+TGG | - | chr1.4:65399846-65399865 | None:intergenic | 40.0% | |
AAGAGGTGAAGGAAGAGAAA+AGG | - | chr1.4:65398990-65399009 | None:intergenic | 40.0% | |
AAGGTTGTGTATTCCAAACC+TGG | - | chr1.4:65399958-65399977 | None:intergenic | 40.0% | |
AATACACAACCTTGCGATAG+AGG | + | chr1.4:65399965-65399984 | MS.gene036433:CDS | 40.0% | |
AGAGGTGAAGGAAGAGAAAA+GGG | - | chr1.4:65398989-65399008 | None:intergenic | 40.0% | |
AGATACAAGATTGTTGCTGC+CGG | + | chr1.4:65400778-65400797 | MS.gene036433:CDS | 40.0% | |
AGTTTGTGAGTGATCTACTC+AGG | + | chr1.4:65399437-65399456 | MS.gene036433:intron | 40.0% | |
CATGTAAAACCAGCATTAGG+AGG | + | chr1.4:65400385-65400404 | MS.gene036433:CDS | 40.0% | |
CTCGCAAACTTCTGTTAGAT+CGG | - | chr1.4:65399891-65399910 | None:intergenic | 40.0% | |
GAGTCATTACAGAACCATGT+TGG | + | chr1.4:65400815-65400834 | MS.gene036433:CDS | 40.0% | |
GATGGCATGTATTTCTCATC+AGG | - | chr1.4:65400166-65400185 | None:intergenic | 40.0% | |
GCATGAATCTGGTTGAGATT+CGG | - | chr1.4:65400106-65400125 | None:intergenic | 40.0% | |
GGATCATCCAAACTTGGAAT+AGG | + | chr1.4:65400706-65400725 | MS.gene036433:CDS | 40.0% | |
GGTTGCAATATATGAGAGAG+TGG | + | chr1.4:65400836-65400855 | MS.gene036433:CDS | 40.0% | |
TATACTGCGGGTAATGCAAA+GGG | + | chr1.4:65400223-65400242 | MS.gene036433:CDS | 40.0% | |
TATCACGGCACAAATTTACC+TGG | + | chr1.4:65400259-65400278 | MS.gene036433:CDS | 40.0% | |
TCTGTTGGAACATTCTTCTG+TGG | + | chr1.4:65400007-65400026 | MS.gene036433:CDS | 40.0% | |
TCTTCAACTTTCGGTTCATC+TGG | - | chr1.4:65399851-65399870 | None:intergenic | 40.0% | |
! | AATCCATCTGGAATCTCCAA+AGG | - | chr1.4:65399587-65399606 | None:intergenic | 40.0% |
! | AATGACACTTTAAGGGTTGC+AGG | - | chr1.4:65400457-65400476 | None:intergenic | 40.0% |
! | GCTCAATAAGAGCATGAATC+TGG | - | chr1.4:65400117-65400136 | None:intergenic | 40.0% |
! | GGAGCAATTTTGTATACTGC+GGG | + | chr1.4:65400211-65400230 | MS.gene036433:CDS | 40.0% |
! | TTATAACCCTTTGGAGGGTT+AGG | - | chr1.4:65399800-65399819 | None:intergenic | 40.0% |
!! | AAGTGGCTTTTTAAGAGCTG+GGG | - | chr1.4:65399720-65399739 | None:intergenic | 40.0% |
!! | AATTCTAACGGAAAGGCACT+AGG | + | chr1.4:65399545-65399564 | MS.gene036433:CDS | 40.0% |
!!! | GTGTCGTGGTTTTTCAAGAA+TGG | + | chr1.4:65400190-65400209 | MS.gene036433:CDS | 40.0% |
!!! | GTTTTTTTCTCTGAGCACAG+TGG | + | chr1.4:65400571-65400590 | MS.gene036433:CDS | 40.0% |
!!! | TGGGTTTTTTGCCCATTCAA+TGG | + | chr1.4:65400430-65400449 | MS.gene036433:CDS | 40.0% |
AAAAACCACGACACCGATGA+TGG | - | chr1.4:65400184-65400203 | None:intergenic | 45.0% | |
AAGGAGAAGGACAATTGGCT+AGG | + | chr1.4:65401000-65401019 | MS.gene036433:CDS | 45.0% | |
AGAATACCTTGTGGCCATTG+TGG | - | chr1.4:65399013-65399032 | None:intergenic | 45.0% | |
AGCCAATTGTCCTTCTCCTT+TGG | - | chr1.4:65401000-65401019 | None:intergenic | 45.0% | |
ATGCTAGCTATCCTCATGCA+GGG | + | chr1.4:65400671-65400690 | MS.gene036433:CDS | 45.0% | |
CAAGTTTGGATGATCCCTGA+AGG | - | chr1.4:65400702-65400721 | None:intergenic | 45.0% | |
CCAAAGGGTTATAAAGCCGT+CGG | + | chr1.4:65399806-65399825 | MS.gene036433:CDS | 45.0% | |
CCAAGACAGGAAAATCCATC+TGG | - | chr1.4:65399599-65399618 | None:intergenic | 45.0% | |
CCATCATTATATCCTCCACC+AGG | - | chr1.4:65400280-65400299 | None:intergenic | 45.0% | |
CCCAAGTGATATTCTTCCAC+CGG | - | chr1.4:65399474-65399493 | None:intergenic | 45.0% | |
CCGGTGGAAGAATATCACTT+GGG | + | chr1.4:65399471-65399490 | MS.gene036433:CDS | 45.0% | |
CCTGGTGGAGGATATAATGA+TGG | + | chr1.4:65400277-65400296 | MS.gene036433:CDS | 45.0% | |
CTTCAGGGATCATCCAAACT+TGG | + | chr1.4:65400700-65400719 | MS.gene036433:CDS | 45.0% | |
GAAGGAAGAGAAAAGGGAAG+TGG | - | chr1.4:65398983-65399002 | None:intergenic | 45.0% | |
GAAGGGAAACATAGAGAGTG+CGG | + | chr1.4:65400351-65400370 | MS.gene036433:CDS | 45.0% | |
GATACAAGATTGTTGCTGCC+GGG | + | chr1.4:65400779-65400798 | MS.gene036433:CDS | 45.0% | |
GCGAACTCCTATTCCAAGTT+TGG | - | chr1.4:65400716-65400735 | None:intergenic | 45.0% | |
GTATACTGCGGGTAATGCAA+AGG | + | chr1.4:65400222-65400241 | MS.gene036433:CDS | 45.0% | |
GTCCAAAGGAGAAGGACAAT+TGG | + | chr1.4:65400995-65401014 | MS.gene036433:CDS | 45.0% | |
TATTGAGCATTACGGGCCAA+CGG | + | chr1.4:65400129-65400148 | MS.gene036433:CDS | 45.0% | |
TGAGCACAGTGGAGGTAAAT+GGG | + | chr1.4:65400582-65400601 | MS.gene036433:CDS | 45.0% | |
TTCCTTCACCTCTTCCACAA+TGG | + | chr1.4:65398996-65399015 | MS.gene036433:CDS | 45.0% | |
TTGTGAGTGATCTACTCAGG+TGG | + | chr1.4:65399440-65399459 | MS.gene036433:intron | 45.0% | |
TTTCTCGCATCTTCATCGGT+AGG | - | chr1.4:65400322-65400341 | None:intergenic | 45.0% | |
! | ACGGCTTTATAACCCTTTGG+AGG | - | chr1.4:65399806-65399825 | None:intergenic | 45.0% |
! | AGACCTTTGGAGATTCCAGA+TGG | + | chr1.4:65399581-65399600 | MS.gene036433:CDS | 45.0% |
! | CGGCTTTATAACCCTTTGGA+GGG | - | chr1.4:65399805-65399824 | None:intergenic | 45.0% |
! | CTAGCTAGAGGTGTATCTGT+TGG | + | chr1.4:65399992-65400011 | MS.gene036433:CDS | 45.0% |
! | GATAGAGGTATGCTAGCTAG+AGG | + | chr1.4:65399980-65399999 | MS.gene036433:CDS | 45.0% |
! | TTTCGGTTCATCTGGATTGG+TGG | - | chr1.4:65399843-65399862 | None:intergenic | 45.0% |
! | TTTTTCTCTGAGCACAGTGG+AGG | + | chr1.4:65400574-65400593 | MS.gene036433:CDS | 45.0% |
!! | CCAGATGGATTTTCCTGTCT+TGG | + | chr1.4:65399596-65399615 | MS.gene036433:CDS | 45.0% |
AAGAGCTGGGGATTCTGACT+CGG | - | chr1.4:65399708-65399727 | None:intergenic | 50.0% | |
ACAAGAACGTGTCCTCGCAA+CGG | - | chr1.4:65399647-65399666 | None:intergenic | 50.0% | |
AGGGTTGCAGGTCCATTGAA+TGG | - | chr1.4:65400445-65400464 | None:intergenic | 50.0% | |
ATTGTTGCTGCCGGGTATCT+TGG | + | chr1.4:65400787-65400806 | MS.gene036433:CDS | 50.0% | |
CACGGCACAAATTTACCTGG+TGG | + | chr1.4:65400262-65400281 | MS.gene036433:CDS | 50.0% | |
CATGCAGGGACTTACCTTCA+GGG | + | chr1.4:65400685-65400704 | MS.gene036433:CDS | 50.0% | |
CATGCTAGCTATCCTCATGC+AGG | + | chr1.4:65400670-65400689 | MS.gene036433:CDS | 50.0% | |
CGGTGAACATGTCGGTGATT+GGG | + | chr1.4:65400501-65400520 | MS.gene036433:CDS | 50.0% | |
CTGAGCACAGTGGAGGTAAA+TGG | + | chr1.4:65400581-65400600 | MS.gene036433:CDS | 50.0% | |
GACTCCATCACCAAGATACC+CGG | - | chr1.4:65400800-65400819 | None:intergenic | 50.0% | |
GACTCGGAACAATCAGCTTG+AGG | - | chr1.4:65399692-65399711 | None:intergenic | 50.0% | |
GCCGGTGGAAGAATATCACT+TGG | + | chr1.4:65399470-65399489 | MS.gene036433:CDS | 50.0% | |
GCTAGCATACCTCTATCGCA+AGG | - | chr1.4:65399977-65399996 | None:intergenic | 50.0% | |
GGCACAAATTTACCTGGTGG+AGG | + | chr1.4:65400265-65400284 | MS.gene036433:CDS | 50.0% | |
GGGTTGCAGGTCCATTGAAT+GGG | - | chr1.4:65400444-65400463 | None:intergenic | 50.0% | |
GGTGGTAACTACTATGCCGA+CGG | - | chr1.4:65399825-65399844 | None:intergenic | 50.0% | |
GTAAAGGCTCCTCCTAATGC+TGG | - | chr1.4:65400397-65400416 | None:intergenic | 50.0% | |
GTGGCAGTAGTAACCAAGAC+AGG | - | chr1.4:65399612-65399631 | None:intergenic | 50.0% | |
TCATGCAGGGACTTACCTTC+AGG | + | chr1.4:65400684-65400703 | MS.gene036433:CDS | 50.0% | |
TCCTCACCAGAAAGCTCTGT+TGG | - | chr1.4:65400964-65400983 | None:intergenic | 50.0% | |
TCCTTCTCCTTTGGACCAGT+TGG | - | chr1.4:65400991-65401010 | None:intergenic | 50.0% | |
TCGGTGAACATGTCGGTGAT+TGG | + | chr1.4:65400500-65400519 | MS.gene036433:CDS | 50.0% | |
TGAAGGTAAGTCCCTGCATG+AGG | - | chr1.4:65400685-65400704 | None:intergenic | 50.0% | |
TGAGTGATCTACTCAGGTGG+CGG | + | chr1.4:65399443-65399462 | MS.gene036433:intron | 50.0% | |
TGGTTGCCTAACCCTCCAAA+GGG | + | chr1.4:65399791-65399810 | MS.gene036433:CDS | 50.0% | |
TTGGTTGCCTAACCCTCCAA+AGG | + | chr1.4:65399790-65399809 | MS.gene036433:CDS | 50.0% | |
! | AACAGAGCTTTCTGGTGAGG+AGG | + | chr1.4:65400963-65400982 | MS.gene036433:CDS | 50.0% |
! | ACAGAGCTTTCTGGTGAGGA+GGG | + | chr1.4:65400964-65400983 | MS.gene036433:CDS | 50.0% |
! | CCGACGGCTTTATAACCCTT+TGG | - | chr1.4:65399809-65399828 | None:intergenic | 50.0% |
! | TCCAACAGAGCTTTCTGGTG+AGG | + | chr1.4:65400960-65400979 | MS.gene036433:CDS | 50.0% |
AGGACACGTTCTTGTCGCTC+GGG | + | chr1.4:65399652-65399671 | MS.gene036433:CDS | 55.0% | |
CCTCTTCCACAATGGCCACA+AGG | + | chr1.4:65399004-65399023 | MS.gene036433:CDS | 55.0% | |
CCTTGTGGCCATTGTGGAAG+AGG | - | chr1.4:65399007-65399026 | None:intergenic | 55.0% | |
CTTCGCGTGAGCAACTTCAC+CGG | + | chr1.4:65400535-65400554 | MS.gene036433:CDS | 55.0% | |
GAGGACACGTTCTTGTCGCT+CGG | + | chr1.4:65399651-65399670 | MS.gene036433:CDS | 55.0% | |
GCAACGGCTGATCATTGGAG+TGG | - | chr1.4:65399631-65399650 | None:intergenic | 55.0% | |
GCAACTTCACCGGAGAGCTT+TGG | + | chr1.4:65400545-65400564 | MS.gene036433:CDS | 55.0% | |
GCCAACTGGTCCAAAGGAGA+AGG | + | chr1.4:65400987-65401006 | MS.gene036433:CDS | 55.0% | |
GGCCATTGTGGAAGAGGTGA+AGG | - | chr1.4:65399001-65399020 | None:intergenic | 55.0% | |
GGTGAAGTTGCTCACGCGAA+GGG | - | chr1.4:65400536-65400555 | None:intergenic | 55.0% | |
TCCAATGATCAGCCGTTGCG+AGG | + | chr1.4:65399632-65399651 | MS.gene036433:CDS | 55.0% | |
TCCTCGCAACGGCTGATCAT+TGG | - | chr1.4:65399636-65399655 | None:intergenic | 55.0% | |
! | CAGAGCTTTCTGGTGAGGAG+GGG | + | chr1.4:65400965-65400984 | MS.gene036433:CDS | 55.0% |
!! | ACATGCCATCATCGGTGTCG+TGG | + | chr1.4:65400176-65400195 | MS.gene036433:CDS | 55.0% |
!! | TACTCAGGTGGCGGTTTTGC+CGG | + | chr1.4:65399452-65399471 | MS.gene036433:intron | 55.0% |
CGGTGAAGTTGCTCACGCGA+AGG | - | chr1.4:65400537-65400556 | None:intergenic | 60.0% | |
GCTGCCGGGTATCTTGGTGA+TGG | + | chr1.4:65400793-65400812 | MS.gene036433:CDS | 60.0% | |
GGAGGGGCCAACTGGTCCAA+AGG | + | chr1.4:65400981-65401000 | MS.gene036433:CDS | 65.0% | |
TCTGGTGAGGAGGGGCCAAC+TGG | + | chr1.4:65400973-65400992 | MS.gene036433:CDS | 65.0% | |
!! | TCAGGTGGCGGTTTTGCCGG+TGG | + | chr1.4:65399455-65399474 | MS.gene036433:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.4 | gene | 65398923 | 65401038 | 65398923 | ID=MS.gene036433 |
chr1.4 | mRNA | 65398923 | 65401038 | 65398923 | ID=MS.gene036433.t1;Parent=MS.gene036433 |
chr1.4 | exon | 65398923 | 65399025 | 65398923 | ID=MS.gene036433.t1.exon1;Parent=MS.gene036433.t1 |
chr1.4 | CDS | 65398923 | 65399025 | 65398923 | ID=cds.MS.gene036433.t1;Parent=MS.gene036433.t1 |
chr1.4 | exon | 65399459 | 65401038 | 65399459 | ID=MS.gene036433.t1.exon2;Parent=MS.gene036433.t1 |
chr1.4 | CDS | 65399459 | 65401038 | 65399459 | ID=cds.MS.gene036433.t1;Parent=MS.gene036433.t1 |
Gene Sequence |
Protein sequence |