Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040097.t1 | XP_003631146.1 | 99 | 315 | 3 | 0 | 1 | 315 | 1 | 315 | 8.40E-175 | 622.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040097.t1 | Q9C9X3 | 56.2 | 315 | 137 | 1 | 1 | 314 | 1 | 315 | 7.8e-97 | 355.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040097.t1 | G7LE90 | 99.0 | 315 | 3 | 0 | 1 | 315 | 1 | 315 | 6.0e-175 | 622.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene058336 | MS.gene040097 | PPI |
| MS.gene57291 | MS.gene040097 | PPI |
| MS.gene45772 | MS.gene040097 | PPI |
| MS.gene67887 | MS.gene040097 | PPI |
| MS.gene061777 | MS.gene040097 | PPI |
| MS.gene89484 | MS.gene040097 | PPI |
| MS.gene030809 | MS.gene040097 | PPI |
| MS.gene056195 | MS.gene040097 | PPI |
| MS.gene040097 | MS.gene043964 | PPI |
| MS.gene55897 | MS.gene040097 | PPI |
| MS.gene016642 | MS.gene040097 | PPI |
| MS.gene28077 | MS.gene040097 | PPI |
| MS.gene010215 | MS.gene040097 | PPI |
| MS.gene00058 | MS.gene040097 | PPI |
| MS.gene92405 | MS.gene040097 | PPI |
| MS.gene035891 | MS.gene040097 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040097.t1 | MTR_8g107640 | 99.048 | 315 | 3 | 0 | 1 | 315 | 1 | 315 | 0.0 | 654 |
| MS.gene040097.t1 | MTR_6g071615 | 79.618 | 314 | 64 | 0 | 1 | 314 | 1 | 314 | 0.0 | 513 |
| MS.gene040097.t1 | MTR_1g112520 | 77.707 | 314 | 70 | 0 | 1 | 314 | 1 | 314 | 1.88e-180 | 501 |
| MS.gene040097.t1 | MTR_6g071605 | 74.841 | 314 | 79 | 0 | 1 | 314 | 1 | 314 | 9.74e-180 | 499 |
| MS.gene040097.t1 | MTR_6g071595 | 77.707 | 314 | 70 | 0 | 1 | 314 | 1 | 314 | 6.47e-173 | 481 |
| MS.gene040097.t1 | MTR_1g033560 | 59.554 | 314 | 123 | 3 | 1 | 312 | 1 | 312 | 1.10e-139 | 397 |
| MS.gene040097.t1 | MTR_6g071595 | 76.800 | 250 | 58 | 0 | 1 | 250 | 1 | 250 | 5.02e-139 | 394 |
| MS.gene040097.t1 | MTR_8g038150 | 40.379 | 317 | 182 | 3 | 1 | 312 | 1 | 315 | 4.44e-74 | 231 |
| MS.gene040097.t1 | MTR_8g038180 | 38.978 | 313 | 188 | 3 | 1 | 312 | 1 | 311 | 2.39e-72 | 226 |
| MS.gene040097.t1 | MTR_8g038220 | 38.978 | 313 | 188 | 3 | 1 | 312 | 1 | 311 | 1.11e-71 | 224 |
| MS.gene040097.t1 | MTR_3g018780 | 38.217 | 314 | 191 | 3 | 1 | 313 | 1 | 312 | 3.17e-71 | 223 |
| MS.gene040097.t1 | MTR_8g038220 | 38.689 | 305 | 185 | 2 | 9 | 312 | 7 | 310 | 2.11e-70 | 221 |
| MS.gene040097.t1 | MTR_3g018790 | 38.585 | 311 | 189 | 2 | 6 | 315 | 5 | 314 | 8.67e-70 | 219 |
| MS.gene040097.t1 | MTR_5g063670 | 37.539 | 317 | 192 | 6 | 1 | 314 | 1 | 314 | 2.13e-68 | 216 |
| MS.gene040097.t1 | MTR_0276s0050 | 36.593 | 317 | 197 | 3 | 1 | 315 | 1 | 315 | 8.68e-67 | 212 |
| MS.gene040097.t1 | MTR_8g038210 | 36.190 | 315 | 199 | 2 | 1 | 315 | 1 | 313 | 8.60e-66 | 209 |
| MS.gene040097.t1 | MTR_2g031980 | 35.762 | 302 | 192 | 2 | 12 | 312 | 11 | 311 | 2.07e-64 | 206 |
| MS.gene040097.t1 | MTR_8g038210 | 35.873 | 315 | 200 | 2 | 1 | 315 | 1 | 313 | 9.17e-64 | 204 |
| MS.gene040097.t1 | MTR_3g018790 | 34.568 | 243 | 157 | 2 | 74 | 315 | 19 | 260 | 1.27e-42 | 148 |
| MS.gene040097.t1 | MTR_6g028030 | 31.250 | 304 | 195 | 7 | 16 | 310 | 9 | 307 | 4.73e-37 | 135 |
| MS.gene040097.t1 | MTR_8g038170 | 29.870 | 308 | 191 | 6 | 22 | 312 | 12 | 311 | 8.50e-34 | 126 |
| MS.gene040097.t1 | MTR_8g038170 | 29.870 | 308 | 191 | 6 | 22 | 312 | 12 | 311 | 8.50e-34 | 126 |
| MS.gene040097.t1 | MTR_3g018920 | 35.096 | 208 | 99 | 4 | 6 | 209 | 5 | 180 | 1.56e-30 | 114 |
| MS.gene040097.t1 | MTR_3g018925 | 41.667 | 96 | 56 | 0 | 220 | 315 | 14 | 109 | 2.07e-16 | 74.3 |
| MS.gene040097.t1 | MTR_8g038090 | 49.275 | 69 | 34 | 1 | 245 | 312 | 22 | 90 | 8.01e-13 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040097.t1 | AT1G68090 | 56.190 | 315 | 137 | 1 | 1 | 314 | 1 | 315 | 7.58e-130 | 372 |
| MS.gene040097.t1 | AT1G68090 | 53.200 | 250 | 116 | 1 | 1 | 249 | 1 | 250 | 1.65e-92 | 275 |
| MS.gene040097.t1 | AT1G68090 | 28.767 | 146 | 100 | 2 | 170 | 315 | 16 | 157 | 3.28e-11 | 62.8 |
| MS.gene040097.t1 | AT5G10230 | 40.256 | 313 | 185 | 2 | 1 | 312 | 1 | 312 | 4.08e-82 | 251 |
| MS.gene040097.t1 | AT5G10220 | 40.823 | 316 | 181 | 5 | 1 | 312 | 1 | 314 | 1.82e-81 | 249 |
| MS.gene040097.t1 | AT5G65020 | 40.952 | 315 | 181 | 4 | 1 | 312 | 1 | 313 | 6.31e-80 | 246 |
| MS.gene040097.t1 | AT1G35720 | 38.291 | 316 | 192 | 3 | 1 | 314 | 1 | 315 | 6.51e-73 | 228 |
| MS.gene040097.t1 | AT5G65020 | 40.000 | 290 | 169 | 4 | 26 | 312 | 11 | 298 | 4.69e-69 | 217 |
| MS.gene040097.t1 | AT5G65020 | 30.714 | 140 | 94 | 1 | 173 | 312 | 3 | 139 | 4.27e-13 | 68.9 |
| MS.gene040097.t1 | AT5G12380 | 36.825 | 315 | 192 | 4 | 1 | 312 | 1 | 311 | 1.85e-67 | 214 |
| MS.gene040097.t1 | AT2G38760 | 34.796 | 319 | 200 | 3 | 1 | 312 | 1 | 318 | 1.86e-62 | 201 |
| MS.gene040097.t1 | AT2G38750 | 29.904 | 311 | 185 | 9 | 26 | 314 | 2 | 301 | 8.16e-30 | 115 |
| MS.gene040097.t1 | AT2G38750 | 29.904 | 311 | 185 | 9 | 26 | 314 | 19 | 318 | 8.21e-30 | 115 |
Find 80 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCTTATCTTCTGAGCTTTC+TGG | 0.083778 | 4.4:+66175 | MS.gene040097:CDS |
| CATCCCAGCTCCAATATTTA+AGG | 0.208022 | 4.4:+66326 | MS.gene040097:CDS |
| AGACGGTCAGAGTCTGTTTA+AGG | 0.250402 | 4.4:-66258 | None:intergenic |
| TTCTGAGCTTTCTGGCAAAT+TGG | 0.253655 | 4.4:+66183 | MS.gene040097:CDS |
| TGGAGAATGCTGTTCTTCTT+TGG | 0.257631 | 4.4:+66203 | MS.gene040097:CDS |
| CTATGGTCATTCATTGAAAA+AGG | 0.272511 | 4.4:+66685 | MS.gene040097:CDS |
| ACCTTTGCGAAATACTTTGC+AGG | 0.321834 | 4.4:-66874 | None:intergenic |
| TGCCTCTGGGGATCATAAAA+AGG | 0.322450 | 4.4:+66402 | MS.gene040097:CDS |
| GGTAAATCTGCCTTAAATAT+TGG | 0.325628 | 4.4:-66336 | None:intergenic |
| TAAAGCAGGTGAGAAGAAAC+TGG | 0.345893 | 4.4:+66577 | MS.gene040097:CDS |
| AAGTTGCATAGCATCGTCTC+TGG | 0.368282 | 4.4:-65867 | None:intergenic |
| TATTAACCTCGGGGCCTTCA+TGG | 0.371117 | 4.4:-66520 | None:intergenic |
| TTTCAATGAATGACCATAGT+TGG | 0.381777 | 4.4:-66681 | None:intergenic |
| AGGCATTTCTTTCAATATCA+TGG | 0.384021 | 4.4:-66384 | None:intergenic |
| GATAAACGCCGAATCTAGTA+TGG | 0.386843 | 4.4:-66357 | None:intergenic |
| GCCATTTCTCTATTAACCTC+GGG | 0.416575 | 4.4:-66530 | None:intergenic |
| ATGATCGCATCGCGGGTGGC+AGG | 0.418114 | 4.4:-66235 | None:intergenic |
| GCAATAAAGAATGAAACATC+AGG | 0.421465 | 4.4:+66805 | MS.gene040097:CDS |
| CATTTGGACTGCTACTGGTT+GGG | 0.425583 | 4.4:-67568 | None:intergenic |
| ACGTAAGGCAATGAAAGGTC+TGG | 0.431308 | 4.4:+67381 | MS.gene040097:CDS |
| CAGATTTACCATACTAGATT+CGG | 0.431656 | 4.4:+66349 | MS.gene040097:CDS |
| CCGATGACACGAAACTTATG+AGG | 0.444443 | 4.4:+67407 | MS.gene040097:CDS |
| TTTGAGAAGATCTTCAGAAT+AGG | 0.444725 | 4.4:-66152 | None:intergenic |
| TAGCTCTGTATTCTTGTTGG+AGG | 0.449864 | 4.4:-66129 | None:intergenic |
| TCTGCCTTAAATATTGGAGC+TGG | 0.456137 | 4.4:-66330 | None:intergenic |
| CCAACTGTGCGGCACTCCGT+TGG | 0.459909 | 4.4:-66634 | None:intergenic |
| GCAGTTCACTCGGAAACATC+TGG | 0.461957 | 4.4:+67511 | MS.gene040097:CDS |
| CCCCGAGGTTAATAGAGAAA+TGG | 0.469091 | 4.4:+66529 | MS.gene040097:CDS |
| CGTAAGGCAATGAAAGGTCT+GGG | 0.471119 | 4.4:+67382 | MS.gene040097:CDS |
| CGGAAACATCTGGCCACTAC+AGG | 0.473093 | 4.4:+67521 | MS.gene040097:CDS |
| GCCAAGGTTCTTTATAAAGC+AGG | 0.481064 | 4.4:+66563 | MS.gene040097:CDS |
| AGGTAGCTCTGTATTCTTGT+TGG | 0.495794 | 4.4:-66132 | None:intergenic |
| AGCCATTTCTCTATTAACCT+CGG | 0.502469 | 4.4:-66531 | None:intergenic |
| GATATTGAAAGAAATGCCTC+TGG | 0.502650 | 4.4:+66388 | MS.gene040097:CDS |
| CTTAAATATTGGAGCTGGGA+TGG | 0.506218 | 4.4:-66325 | None:intergenic |
| TCTGTATTCTTGTTGGAGGT+AGG | 0.508043 | 4.4:-66125 | None:intergenic |
| CAACTTCACCGTGCTTTCAA+AGG | 0.508493 | 4.4:+65884 | MS.gene040097:CDS |
| CCTCATAAGTTTCGTGTCAT+CGG | 0.515712 | 4.4:-67407 | None:intergenic |
| CCAACGGAGTGCCGCACAGT+TGG | 0.517490 | 4.4:+66634 | MS.gene040097:CDS |
| ACCTCGGGGCCTTCATGGCG+TGG | 0.520754 | 4.4:-66515 | None:intergenic |
| TTTAAGGATGATCGCATCGC+GGG | 0.525060 | 4.4:-66242 | None:intergenic |
| ATGTAGATCTATCTCACTCC+TGG | 0.533758 | 4.4:-67440 | None:intergenic |
| GCATTTGGACTGCTACTGGT+TGG | 0.546867 | 4.4:-67569 | None:intergenic |
| GAAATACTTTGCAGGACTCT+CGG | 0.548694 | 4.4:-66866 | None:intergenic |
| CTGCCTTAAATATTGGAGCT+GGG | 0.548696 | 4.4:-66329 | None:intergenic |
| ACCTGCTTTATAAAGAACCT+TGG | 0.551796 | 4.4:-66564 | None:intergenic |
| TCATAGAGATGCCACTCAGC+GGG | 0.554538 | 4.4:+66102 | MS.gene040097:CDS |
| ATGAATGACCATAGTTGGCA+TGG | 0.568883 | 4.4:-66676 | None:intergenic |
| AAGTATATTGATCACAGCGC+TGG | 0.572934 | 4.4:-66077 | None:intergenic |
| TGATCGCATCGCGGGTGGCA+GGG | 0.577286 | 4.4:-66234 | None:intergenic |
| TTGTGCAAATATTCAGCCAA+CGG | 0.579000 | 4.4:+66618 | MS.gene040097:CDS |
| AGAGAAGAAAAGCCCTGTAG+TGG | 0.580742 | 4.4:-67534 | None:intergenic |
| TTGCAGGACTCTCGGCACAT+TGG | 0.581738 | 4.4:-66858 | None:intergenic |
| GTAAGCACGCCACGCCATGA+AGG | 0.585985 | 4.4:+66506 | MS.gene040097:CDS |
| AGTTGCATAGCATCGTCTCT+GGG | 0.589297 | 4.4:-65866 | None:intergenic |
| AGAAGGAACCTTTGAAAGCA+CGG | 0.590481 | 4.4:-65892 | None:intergenic |
| GTCCTACGTAAGGCAATGAA+AGG | 0.594808 | 4.4:+67376 | MS.gene040097:CDS |
| ATATTGAAAGAAATGCCTCT+GGG | 0.595614 | 4.4:+66389 | MS.gene040097:CDS |
| GCTGAATGATGCAGTTCACT+CGG | 0.599454 | 4.4:+67501 | MS.gene040097:CDS |
| ATGTATGCAGGTCCTACGTA+AGG | 0.602486 | 4.4:+67366 | MS.gene040097:intron |
| AAGGATGATCGCATCGCGGG+TGG | 0.610475 | 4.4:-66239 | None:intergenic |
| GGAAACATCTGGCCACTACA+GGG | 0.629881 | 4.4:+67522 | MS.gene040097:CDS |
| GTTTAAGGATGATCGCATCG+CGG | 0.634734 | 4.4:-66243 | None:intergenic |
| TCCTGCAAAGTATTTCGCAA+AGG | 0.635917 | 4.4:+66873 | MS.gene040097:CDS |
| CAATAAAGAATGAAACATCA+GGG | 0.640821 | 4.4:+66806 | MS.gene040097:CDS |
| TTGGAGGTAGGCCCGCTGAG+TGG | 0.643177 | 4.4:-66113 | None:intergenic |
| TTGCATAGCATCGTCTCTGG+GGG | 0.646475 | 4.4:-65864 | None:intergenic |
| CCATTTCTCTATTAACCTCG+GGG | 0.647560 | 4.4:-66529 | None:intergenic |
| TCGAGAACATATAACTTCAG+TGG | 0.648591 | 4.4:-66299 | None:intergenic |
| AAAGCAGGTGAGAAGAAACT+GGG | 0.649440 | 4.4:+66578 | MS.gene040097:CDS |
| AATGGCTGAGAACGATGCCA+AGG | 0.650141 | 4.4:+66547 | MS.gene040097:CDS |
| GTTGCATAGCATCGTCTCTG+GGG | 0.658534 | 4.4:-65865 | None:intergenic |
| TTATGAGGGTGATTGTAACC+AGG | 0.659039 | 4.4:+67422 | MS.gene040097:CDS |
| CGATGACACGAAACTTATGA+GGG | 0.666861 | 4.4:+67408 | MS.gene040097:CDS |
| CTCATAGAGATGCCACTCAG+CGG | 0.668547 | 4.4:+66101 | MS.gene040097:CDS |
| GACCTTTCATTGCCTTACGT+AGG | 0.695083 | 4.4:-67378 | None:intergenic |
| GCCACGCCATGAAGGCCCCG+AGG | 0.698151 | 4.4:+66514 | MS.gene040097:CDS |
| TATTGAAAGAAATGCCTCTG+GGG | 0.698736 | 4.4:+66390 | MS.gene040097:CDS |
| GTAAGGCAATGAAAGGTCTG+GGG | 0.711244 | 4.4:+67383 | MS.gene040097:CDS |
| ATTTATGGCAGCCAACTGTG+CGG | 0.736814 | 4.4:-66645 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACTTATTGTTAAAATAATTT+TGG | + | chr4.4:67015-67034 | MS.gene040097:intron | 10.0% |
| !!! | CTTATTGTTAAAATAATTTT+GGG | + | chr4.4:67016-67035 | MS.gene040097:intron | 10.0% |
| !! | AAAATAAATACAATAAAGCT+TGG | - | chr4.4:67158-67177 | None:intergenic | 15.0% |
| !! | AAATAAATACAATAAAGCTT+GGG | - | chr4.4:67157-67176 | None:intergenic | 15.0% |
| !! | GAATTAGAATTAGAATTAGA+AGG | - | chr4.4:66010-66029 | None:intergenic | 20.0% |
| !!! | TTAAAATAATTTTGGGAAGA+AGG | + | chr4.4:67023-67042 | MS.gene040097:intron | 20.0% |
| !!! | TTAAGGGTATAAATTTAAAG+TGG | - | chr4.4:66729-66748 | None:intergenic | 20.0% |
| ! | AAGGTAAAAATAATGTAGGA+GGG | - | chr4.4:66907-66926 | None:intergenic | 25.0% |
| ! | CAATAAAGAATGAAACATCA+GGG | + | chr4.4:66806-66825 | MS.gene040097:CDS | 25.0% |
| ! | CATCAAGGTAAAAATAATGT+AGG | - | chr4.4:66911-66930 | None:intergenic | 25.0% |
| ! | TTACATATGCAAGTAAAATC+TGG | - | chr4.4:66490-66509 | None:intergenic | 25.0% |
| !! | CTCTTAAAAATTTTATTGCC+AGG | + | chr4.4:67305-67324 | MS.gene040097:intron | 25.0% |
| !! | TTTTATTGCCAGGATAATTA+AGG | + | chr4.4:67315-67334 | MS.gene040097:intron | 25.0% |
| !!! | CTACATTATTTTTACCTTGA+TGG | + | chr4.4:66909-66928 | MS.gene040097:intron | 25.0% |
| !!! | CTGGCAATAAAATTTTTAAG+AGG | - | chr4.4:67307-67326 | None:intergenic | 25.0% |
| AGAATTAGAATTAGAAGGCA+TGG | - | chr4.4:66005-66024 | None:intergenic | 30.0% | |
| AGGCATTTCTTTCAATATCA+TGG | - | chr4.4:66387-66406 | None:intergenic | 30.0% | |
| AGTGTTAACGCTAAATTATG+TGG | + | chr4.4:67252-67271 | MS.gene040097:intron | 30.0% | |
| ATATTGAAAGAAATGCCTCT+GGG | + | chr4.4:66389-66408 | MS.gene040097:CDS | 30.0% | |
| CAAGGTAAAAATAATGTAGG+AGG | - | chr4.4:66908-66927 | None:intergenic | 30.0% | |
| CAGATTTACCATACTAGATT+CGG | + | chr4.4:66349-66368 | MS.gene040097:CDS | 30.0% | |
| CTATGGTCATTCATTGAAAA+AGG | + | chr4.4:66685-66704 | MS.gene040097:CDS | 30.0% | |
| GAAGAAATGAAAACCAAAGA+AGG | - | chr4.4:65912-65931 | None:intergenic | 30.0% | |
| GCAATAAAGAATGAAACATC+AGG | + | chr4.4:66805-66824 | MS.gene040097:CDS | 30.0% | |
| GGCATGGTAAAAATGATTTA+TGG | - | chr4.4:66663-66682 | None:intergenic | 30.0% | |
| GGTAAATCTGCCTTAAATAT+TGG | - | chr4.4:66339-66358 | None:intergenic | 30.0% | |
| TTTCAATGAATGACCATAGT+TGG | - | chr4.4:66684-66703 | None:intergenic | 30.0% | |
| TTTGAGAAGATCTTCAGAAT+AGG | - | chr4.4:66155-66174 | None:intergenic | 30.0% | |
| ! | AATTGTATTAGTCTCCATCA+AGG | - | chr4.4:66926-66945 | None:intergenic | 30.0% |
| ! | GTCATCTTTTATCAGGATTT+GGG | + | chr4.4:66047-66066 | MS.gene040097:intron | 30.0% |
| ! | TCATTCTGTCATCTTTTATC+AGG | + | chr4.4:66040-66059 | MS.gene040097:intron | 30.0% |
| ! | TGTCATCTTTTATCAGGATT+TGG | + | chr4.4:66046-66065 | MS.gene040097:intron | 30.0% |
| !!! | TGGTTGTTTTTAAGGATAGA+GGG | + | chr4.4:67279-67298 | MS.gene040097:intron | 30.0% |
| !!! | TTGGTTGTTTTTAAGGATAG+AGG | + | chr4.4:67278-67297 | MS.gene040097:intron | 30.0% |
| ACCTGCTTTATAAAGAACCT+TGG | - | chr4.4:66567-66586 | None:intergenic | 35.0% | |
| ACCTTTCTTTCAGTGAGAAA+AGG | - | chr4.4:67221-67240 | None:intergenic | 35.0% | |
| ACGCTAAATTATGTGGTTGT+TGG | + | chr4.4:67259-67278 | MS.gene040097:intron | 35.0% | |
| AGCCATTTCTCTATTAACCT+CGG | - | chr4.4:66534-66553 | None:intergenic | 35.0% | |
| ATGAATTCAGCTTGGATAAG+TGG | - | chr4.4:66782-66801 | None:intergenic | 35.0% | |
| GATATTGAAAGAAATGCCTC+TGG | + | chr4.4:66388-66407 | MS.gene040097:CDS | 35.0% | |
| GCTTATCTCCTTAATTATCC+TGG | - | chr4.4:67326-67345 | None:intergenic | 35.0% | |
| TAAAGAGTGAGAGAAGACTA+TGG | - | chr4.4:66752-66771 | None:intergenic | 35.0% | |
| TATTGAAAGAAATGCCTCTG+GGG | + | chr4.4:66390-66409 | MS.gene040097:CDS | 35.0% | |
| TCGAGAACATATAACTTCAG+TGG | - | chr4.4:66302-66321 | None:intergenic | 35.0% | |
| TGAGAGAAGACTATGGTTAA+GGG | - | chr4.4:66745-66764 | None:intergenic | 35.0% | |
| TTATCCAAGCTGAATTCATC+AGG | + | chr4.4:66783-66802 | MS.gene040097:intron | 35.0% | |
| TTGTGCAAATATTCAGCCAA+CGG | + | chr4.4:66618-66637 | MS.gene040097:CDS | 35.0% | |
| TTTCTCACTGAAAGAAAGGT+TGG | + | chr4.4:67221-67240 | MS.gene040097:intron | 35.0% | |
| ! | AGTGGTAGCTTCAAGATTTT+TGG | - | chr4.4:66284-66303 | None:intergenic | 35.0% |
| ! | CATTTTTACCATGCCAACTA+TGG | + | chr4.4:66668-66687 | MS.gene040097:CDS | 35.0% |
| ! | TCCTTTTCTCACTGAAAGAA+AGG | + | chr4.4:67217-67236 | MS.gene040097:intron | 35.0% |
| !! | AACTTGGTTGCTTTGAAACT+AGG | + | chr4.4:67049-67068 | MS.gene040097:intron | 35.0% |
| !! | AGCTTCAAGATTTTTGGAGA+CGG | - | chr4.4:66278-66297 | None:intergenic | 35.0% |
| !! | GCTTTTCTTCTCTCACTTTT+AGG | + | chr4.4:67544-67563 | MS.gene040097:CDS | 35.0% |
| !!! | GTGGTTGTTGGTTGTTTTTA+AGG | + | chr4.4:67271-67290 | MS.gene040097:intron | 35.0% |
| AAAGCAGGTGAGAAGAAACT+GGG | + | chr4.4:66578-66597 | MS.gene040097:CDS | 40.0% | |
| AAGTATATTGATCACAGCGC+TGG | - | chr4.4:66080-66099 | None:intergenic | 40.0% | |
| AATTCAGCTTGGATAAGTGG+CGG | - | chr4.4:66779-66798 | None:intergenic | 40.0% | |
| ACCTTTGCGAAATACTTTGC+AGG | - | chr4.4:66877-66896 | None:intergenic | 40.0% | |
| ATGAATGACCATAGTTGGCA+TGG | - | chr4.4:66679-66698 | None:intergenic | 40.0% | |
| ATGTAGATCTATCTCACTCC+TGG | - | chr4.4:67443-67462 | None:intergenic | 40.0% | |
| ATTGCCTGATGAATTCAGCT+TGG | - | chr4.4:66790-66809 | None:intergenic | 40.0% | |
| CATCCCAGCTCCAATATTTA+AGG | + | chr4.4:66326-66345 | MS.gene040097:CDS | 40.0% | |
| CCATTTCTCTATTAACCTCG+GGG | - | chr4.4:66532-66551 | None:intergenic | 40.0% | |
| CCTCATAAGTTTCGTGTCAT+CGG | - | chr4.4:67410-67429 | None:intergenic | 40.0% | |
| CGATGACACGAAACTTATGA+GGG | + | chr4.4:67408-67427 | MS.gene040097:CDS | 40.0% | |
| CTGCCTTAAATATTGGAGCT+GGG | - | chr4.4:66332-66351 | None:intergenic | 40.0% | |
| CTTAAATATTGGAGCTGGGA+TGG | - | chr4.4:66328-66347 | None:intergenic | 40.0% | |
| GAAATACTTTGCAGGACTCT+CGG | - | chr4.4:66869-66888 | None:intergenic | 40.0% | |
| GATAAACGCCGAATCTAGTA+TGG | - | chr4.4:66360-66379 | None:intergenic | 40.0% | |
| GCCAAGGTTCTTTATAAAGC+AGG | + | chr4.4:66563-66582 | MS.gene040097:CDS | 40.0% | |
| GCCATTTCTCTATTAACCTC+GGG | - | chr4.4:66533-66552 | None:intergenic | 40.0% | |
| GCTTTCAAAGGTTCCTTCTT+TGG | + | chr4.4:65896-65915 | MS.gene040097:intron | 40.0% | |
| GTGAGAGAAGACTATGGTTA+AGG | - | chr4.4:66746-66765 | None:intergenic | 40.0% | |
| TAAAGCAGGTGAGAAGAAAC+TGG | + | chr4.4:66577-66596 | MS.gene040097:CDS | 40.0% | |
| TCTGCCTTAAATATTGGAGC+TGG | - | chr4.4:66333-66352 | None:intergenic | 40.0% | |
| TCTGTATTCTTGTTGGAGGT+AGG | - | chr4.4:66128-66147 | None:intergenic | 40.0% | |
| TGGAGAATGCTGTTCTTCTT+TGG | + | chr4.4:66203-66222 | MS.gene040097:CDS | 40.0% | |
| TTATCTGTACAACAACGTGC+TGG | + | chr4.4:67177-67196 | MS.gene040097:intron | 40.0% | |
| TTATGAGGGTGATTGTAACC+AGG | + | chr4.4:67422-67441 | MS.gene040097:CDS | 40.0% | |
| ! | AGAAGGAACCTTTGAAAGCA+CGG | - | chr4.4:65895-65914 | None:intergenic | 40.0% |
| ! | AGGTAGCTCTGTATTCTTGT+TGG | - | chr4.4:66135-66154 | None:intergenic | 40.0% |
| ! | TACCTTTTTATGATCCCCAG+AGG | - | chr4.4:66407-66426 | None:intergenic | 40.0% |
| ! | TAGCTCTGTATTCTTGTTGG+AGG | - | chr4.4:66132-66151 | None:intergenic | 40.0% |
| ! | TCCTGCAAAGTATTTCGCAA+AGG | + | chr4.4:66873-66892 | MS.gene040097:CDS | 40.0% |
| ! | TTCTGAGCTTTCTGGCAAAT+TGG | + | chr4.4:66183-66202 | MS.gene040097:CDS | 40.0% |
| AAGTTGCATAGCATCGTCTC+TGG | - | chr4.4:65870-65889 | None:intergenic | 45.0% | |
| ACGTAAGGCAATGAAAGGTC+TGG | + | chr4.4:67381-67400 | MS.gene040097:CDS | 45.0% | |
| ACGTTTGCCACTATGTATGC+AGG | + | chr4.4:67354-67373 | MS.gene040097:intron | 45.0% | |
| AGACGGTCAGAGTCTGTTTA+AGG | - | chr4.4:66261-66280 | None:intergenic | 45.0% | |
| AGAGAAGAAAAGCCCTGTAG+TGG | - | chr4.4:67537-67556 | None:intergenic | 45.0% | |
| AGTTGCATAGCATCGTCTCT+GGG | - | chr4.4:65869-65888 | None:intergenic | 45.0% | |
| ATGTATGCAGGTCCTACGTA+AGG | + | chr4.4:67366-67385 | MS.gene040097:intron | 45.0% | |
| ATTTATGGCAGCCAACTGTG+CGG | - | chr4.4:66648-66667 | None:intergenic | 45.0% | |
| CAACTTCACCGTGCTTTCAA+AGG | + | chr4.4:65884-65903 | MS.gene040097:CDS | 45.0% | |
| CCCCGAGGTTAATAGAGAAA+TGG | + | chr4.4:66529-66548 | MS.gene040097:CDS | 45.0% | |
| CCGATGACACGAAACTTATG+AGG | + | chr4.4:67407-67426 | MS.gene040097:CDS | 45.0% | |
| CGCTTATCTTCTGAGCTTTC+TGG | + | chr4.4:66175-66194 | MS.gene040097:CDS | 45.0% | |
| CGTAAGGCAATGAAAGGTCT+GGG | + | chr4.4:67382-67401 | MS.gene040097:CDS | 45.0% | |
| GACCTTTCATTGCCTTACGT+AGG | - | chr4.4:67381-67400 | None:intergenic | 45.0% | |
| GCTGAATGATGCAGTTCACT+CGG | + | chr4.4:67501-67520 | MS.gene040097:CDS | 45.0% | |
| GTAAGGCAATGAAAGGTCTG+GGG | + | chr4.4:67383-67402 | MS.gene040097:CDS | 45.0% | |
| GTCCTACGTAAGGCAATGAA+AGG | + | chr4.4:67376-67395 | MS.gene040097:CDS | 45.0% | |
| GTTTAAGGATGATCGCATCG+CGG | - | chr4.4:66246-66265 | None:intergenic | 45.0% | |
| TTTAAGGATGATCGCATCGC+GGG | - | chr4.4:66245-66264 | None:intergenic | 45.0% | |
| TTTGGGAAGAAGGAGCAACT+TGG | + | chr4.4:67033-67052 | MS.gene040097:intron | 45.0% | |
| ! | AGGAATAGGGGGTACATTCA+CGG | - | chr4.4:65840-65859 | None:intergenic | 45.0% |
| ! | TGCCTCTGGGGATCATAAAA+AGG | + | chr4.4:66402-66421 | MS.gene040097:CDS | 45.0% |
| AATGGCTGAGAACGATGCCA+AGG | + | chr4.4:66547-66566 | MS.gene040097:CDS | 50.0% | |
| CGTAGGACCTGCATACATAG+TGG | - | chr4.4:67364-67383 | None:intergenic | 50.0% | |
| CTCATAGAGATGCCACTCAG+CGG | + | chr4.4:66101-66120 | MS.gene040097:CDS | 50.0% | |
| GCAGTTCACTCGGAAACATC+TGG | + | chr4.4:67511-67530 | MS.gene040097:CDS | 50.0% | |
| GGAAACATCTGGCCACTACA+GGG | + | chr4.4:67522-67541 | MS.gene040097:CDS | 50.0% | |
| GTTGCATAGCATCGTCTCTG+GGG | - | chr4.4:65868-65887 | None:intergenic | 50.0% | |
| TATTAACCTCGGGGCCTTCA+TGG | - | chr4.4:66523-66542 | None:intergenic | 50.0% | |
| TCATAGAGATGCCACTCAGC+GGG | + | chr4.4:66102-66121 | MS.gene040097:CDS | 50.0% | |
| TTGCATAGCATCGTCTCTGG+GGG | - | chr4.4:65867-65886 | None:intergenic | 50.0% | |
| CGGAAACATCTGGCCACTAC+AGG | + | chr4.4:67521-67540 | MS.gene040097:CDS | 55.0% | |
| TCTGGGGGAAGGAGGAATAG+GGG | - | chr4.4:65852-65871 | None:intergenic | 55.0% | |
| TTGCAGGACTCTCGGCACAT+TGG | - | chr4.4:66861-66880 | None:intergenic | 55.0% | |
| ! | ATAGCATCGTCTCTGGGGGA+AGG | - | chr4.4:65863-65882 | None:intergenic | 55.0% |
| ! | CTCTGGGGGAAGGAGGAATA+GGG | - | chr4.4:65853-65872 | None:intergenic | 55.0% |
| ! | TCTCTGGGGGAAGGAGGAAT+AGG | - | chr4.4:65854-65873 | None:intergenic | 55.0% |
| AAGGATGATCGCATCGCGGG+TGG | - | chr4.4:66242-66261 | None:intergenic | 60.0% | |
| CTGGGGGAAGGAGGAATAGG+GGG | - | chr4.4:65851-65870 | None:intergenic | 60.0% | |
| GTAAGCACGCCACGCCATGA+AGG | + | chr4.4:66506-66525 | MS.gene040097:CDS | 60.0% | |
| ATGATCGCATCGCGGGTGGC+AGG | - | chr4.4:66238-66257 | None:intergenic | 65.0% | |
| CCAACTGTGCGGCACTCCGT+TGG | - | chr4.4:66637-66656 | None:intergenic | 65.0% | |
| TGATCGCATCGCGGGTGGCA+GGG | - | chr4.4:66237-66256 | None:intergenic | 65.0% | |
| TTGGAGGTAGGCCCGCTGAG+TGG | - | chr4.4:66116-66135 | None:intergenic | 65.0% | |
| ! | GCATCGTCTCTGGGGGAAGG+AGG | - | chr4.4:65860-65879 | None:intergenic | 65.0% |
| !! | CCAACGGAGTGCCGCACAGT+TGG | + | chr4.4:66634-66653 | MS.gene040097:CDS | 65.0% |
| ACCTCGGGGCCTTCATGGCG+TGG | - | chr4.4:66518-66537 | None:intergenic | 70.0% | |
| GCCACGCCATGAAGGCCCCG+AGG | + | chr4.4:66514-66533 | MS.gene040097:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 65830 | 67579 | 65830 | ID=MS.gene040097 |
| chr4.4 | mRNA | 65830 | 67579 | 65830 | ID=MS.gene040097.t1;Parent=MS.gene040097 |
| chr4.4 | exon | 65830 | 65905 | 65830 | ID=MS.gene040097.t1.exon1;Parent=MS.gene040097.t1 |
| chr4.4 | CDS | 65830 | 65905 | 65830 | ID=cds.MS.gene040097.t1;Parent=MS.gene040097.t1 |
| chr4.4 | exon | 66062 | 66423 | 66062 | ID=MS.gene040097.t1.exon2;Parent=MS.gene040097.t1 |
| chr4.4 | CDS | 66062 | 66423 | 66062 | ID=cds.MS.gene040097.t1;Parent=MS.gene040097.t1 |
| chr4.4 | exon | 66491 | 66706 | 66491 | ID=MS.gene040097.t1.exon3;Parent=MS.gene040097.t1 |
| chr4.4 | CDS | 66491 | 66706 | 66491 | ID=cds.MS.gene040097.t1;Parent=MS.gene040097.t1 |
| chr4.4 | exon | 66805 | 66894 | 66805 | ID=MS.gene040097.t1.exon4;Parent=MS.gene040097.t1 |
| chr4.4 | CDS | 66805 | 66894 | 66805 | ID=cds.MS.gene040097.t1;Parent=MS.gene040097.t1 |
| chr4.4 | exon | 67376 | 67579 | 67376 | ID=MS.gene040097.t1.exon5;Parent=MS.gene040097.t1 |
| chr4.4 | CDS | 67376 | 67579 | 67376 | ID=cds.MS.gene040097.t1;Parent=MS.gene040097.t1 |
| Gene Sequence |
| Protein sequence |
