Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040887.t1 | XP_013466662.1 | 97.5 | 315 | 8 | 0 | 1 | 315 | 1 | 315 | 2.40E-169 | 604.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040887.t1 | Q9C9X3 | 55.6 | 313 | 138 | 1 | 1 | 312 | 1 | 313 | 4.8e-94 | 345.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040887.t1 | A0A072VGY1 | 97.5 | 315 | 8 | 0 | 1 | 315 | 1 | 315 | 1.7e-169 | 604.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene016642 | MS.gene040887 | PPI |
| MS.gene040887 | MS.gene030809 | PPI |
| MS.gene28077 | MS.gene040887 | PPI |
| MS.gene040887 | MS.gene55897 | PPI |
| MS.gene040887 | MS.gene00058 | PPI |
| MS.gene040887 | MS.gene89484 | PPI |
| MS.gene040887 | MS.gene058336 | PPI |
| MS.gene040887 | MS.gene67887 | PPI |
| MS.gene056195 | MS.gene040887 | PPI |
| MS.gene57291 | MS.gene040887 | PPI |
| MS.gene45772 | MS.gene040887 | PPI |
| MS.gene061777 | MS.gene040887 | PPI |
| MS.gene040887 | MS.gene035891 | PPI |
| MS.gene040887 | MS.gene010215 | PPI |
| MS.gene040887 | MS.gene92405 | PPI |
| MS.gene040887 | MS.gene043964 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040887.t1 | MTR_1g033560 | 97.460 | 315 | 8 | 0 | 1 | 315 | 1 | 315 | 0.0 | 632 |
| MS.gene040887.t1 | MTR_8g107640 | 59.873 | 314 | 122 | 3 | 1 | 312 | 1 | 312 | 1.52e-139 | 397 |
| MS.gene040887.t1 | MTR_6g071605 | 60.000 | 315 | 120 | 3 | 1 | 312 | 1 | 312 | 6.27e-133 | 380 |
| MS.gene040887.t1 | MTR_6g071615 | 58.991 | 317 | 124 | 3 | 1 | 314 | 1 | 314 | 5.47e-128 | 368 |
| MS.gene040887.t1 | MTR_1g112520 | 57.862 | 318 | 128 | 3 | 1 | 315 | 1 | 315 | 2.10e-126 | 364 |
| MS.gene040887.t1 | MTR_6g071595 | 60.377 | 318 | 120 | 3 | 1 | 315 | 1 | 315 | 7.66e-125 | 360 |
| MS.gene040887.t1 | MTR_6g071595 | 58.893 | 253 | 98 | 3 | 1 | 250 | 1 | 250 | 2.56e-97 | 288 |
| MS.gene040887.t1 | MTR_3g018790 | 36.508 | 315 | 197 | 3 | 1 | 314 | 1 | 313 | 9.84e-68 | 214 |
| MS.gene040887.t1 | MTR_5g063670 | 36.422 | 313 | 197 | 2 | 1 | 312 | 1 | 312 | 3.46e-67 | 213 |
| MS.gene040887.t1 | MTR_8g038180 | 37.380 | 313 | 193 | 3 | 1 | 312 | 1 | 311 | 1.00e-66 | 212 |
| MS.gene040887.t1 | MTR_8g038210 | 38.413 | 315 | 190 | 4 | 1 | 314 | 1 | 312 | 1.47e-66 | 211 |
| MS.gene040887.t1 | MTR_3g018780 | 37.061 | 313 | 194 | 3 | 1 | 312 | 1 | 311 | 3.18e-66 | 210 |
| MS.gene040887.t1 | MTR_0276s0050 | 36.709 | 316 | 196 | 3 | 1 | 314 | 1 | 314 | 1.36e-65 | 209 |
| MS.gene040887.t1 | MTR_8g038220 | 37.061 | 313 | 194 | 3 | 1 | 312 | 1 | 311 | 2.22e-65 | 208 |
| MS.gene040887.t1 | MTR_8g038210 | 37.778 | 315 | 192 | 4 | 1 | 314 | 1 | 312 | 6.33e-65 | 207 |
| MS.gene040887.t1 | MTR_8g038150 | 35.127 | 316 | 200 | 3 | 1 | 312 | 1 | 315 | 9.07e-65 | 207 |
| MS.gene040887.t1 | MTR_8g038220 | 37.061 | 313 | 193 | 3 | 1 | 312 | 1 | 310 | 2.12e-64 | 206 |
| MS.gene040887.t1 | MTR_2g031980 | 34.211 | 304 | 198 | 2 | 12 | 314 | 11 | 313 | 1.32e-60 | 196 |
| MS.gene040887.t1 | MTR_3g018790 | 33.471 | 242 | 159 | 2 | 74 | 314 | 19 | 259 | 1.43e-44 | 153 |
| MS.gene040887.t1 | MTR_8g038170 | 29.316 | 307 | 194 | 6 | 22 | 312 | 12 | 311 | 2.77e-36 | 132 |
| MS.gene040887.t1 | MTR_8g038170 | 29.316 | 307 | 194 | 6 | 22 | 312 | 12 | 311 | 2.77e-36 | 132 |
| MS.gene040887.t1 | MTR_6g028030 | 29.373 | 303 | 202 | 7 | 16 | 310 | 9 | 307 | 1.85e-30 | 117 |
| MS.gene040887.t1 | MTR_3g018920 | 30.882 | 204 | 108 | 2 | 6 | 209 | 5 | 175 | 1.01e-25 | 101 |
| MS.gene040887.t1 | MTR_3g018925 | 37.755 | 98 | 61 | 0 | 217 | 314 | 11 | 108 | 1.36e-17 | 77.4 |
| MS.gene040887.t1 | MTR_8g038090 | 42.857 | 70 | 39 | 1 | 244 | 312 | 21 | 90 | 7.95e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040887.t1 | AT1G68090 | 55.591 | 313 | 138 | 1 | 1 | 312 | 1 | 313 | 4.07e-126 | 363 |
| MS.gene040887.t1 | AT1G68090 | 29.861 | 144 | 96 | 3 | 171 | 313 | 16 | 155 | 3.44e-11 | 63.5 |
| MS.gene040887.t1 | AT1G68090 | 53.600 | 250 | 115 | 1 | 1 | 249 | 1 | 250 | 6.39e-96 | 284 |
| MS.gene040887.t1 | AT1G68090 | 27.004 | 237 | 151 | 6 | 85 | 311 | 13 | 237 | 1.28e-15 | 75.5 |
| MS.gene040887.t1 | AT1G68090 | 29.861 | 144 | 96 | 3 | 171 | 313 | 16 | 155 | 1.37e-11 | 63.9 |
| MS.gene040887.t1 | AT5G65020 | 41.587 | 315 | 179 | 4 | 1 | 312 | 1 | 313 | 5.70e-82 | 251 |
| MS.gene040887.t1 | AT5G10230 | 38.291 | 316 | 193 | 2 | 1 | 315 | 1 | 315 | 2.56e-79 | 244 |
| MS.gene040887.t1 | AT5G10220 | 38.871 | 319 | 189 | 5 | 1 | 315 | 1 | 317 | 2.08e-73 | 229 |
| MS.gene040887.t1 | AT5G12380 | 38.019 | 313 | 191 | 3 | 1 | 312 | 1 | 311 | 2.72e-73 | 229 |
| MS.gene040887.t1 | AT1G35720 | 36.709 | 316 | 197 | 3 | 1 | 314 | 1 | 315 | 2.14e-72 | 226 |
| MS.gene040887.t1 | AT5G65020 | 40.345 | 290 | 168 | 4 | 26 | 312 | 11 | 298 | 3.70e-70 | 220 |
| MS.gene040887.t1 | AT2G38760 | 32.812 | 320 | 207 | 5 | 1 | 313 | 1 | 319 | 2.93e-55 | 182 |
| MS.gene040887.t1 | AT2G38750 | 29.904 | 311 | 179 | 9 | 26 | 311 | 2 | 298 | 2.56e-30 | 117 |
| MS.gene040887.t1 | AT2G38750 | 29.904 | 311 | 179 | 9 | 26 | 311 | 19 | 315 | 3.99e-30 | 116 |
Find 62 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTTAACAGCATGAGTTAA+TGG | 0.225591 | 1.2:-18123172 | None:intergenic |
| TTTCATACTCTTGTTGAATA+AGG | 0.265779 | 1.2:-18120409 | None:intergenic |
| GTCTTGGGTGTGACACAAAA+AGG | 0.276879 | 1.2:+18120345 | MS.gene040887:CDS |
| ACCATTAGACTATCCAATTC+TGG | 0.283910 | 1.2:-18121626 | None:intergenic |
| GCCAAACTATTGTATAAATC+AGG | 0.302808 | 1.2:+18121659 | MS.gene040887:CDS |
| CCCTGATTTATACAATAGTT+TGG | 0.305552 | 1.2:-18121660 | None:intergenic |
| AACTCTGCGTACACTTCATT+TGG | 0.340739 | 1.2:+18121761 | MS.gene040887:CDS |
| GCAGCGTATTATAGTAGATA+TGG | 0.350950 | 1.2:+18123145 | MS.gene040887:CDS |
| CTGATGATAGTAGACTAATA+AGG | 0.352131 | 1.2:+18123080 | MS.gene040887:CDS |
| TATTTATTGTTATAGGTCTT+GGG | 0.357890 | 1.2:+18120330 | MS.gene040887:intron |
| CGCAAGTCAATGAAGGGTAT+TGG | 0.362509 | 1.2:+18123055 | MS.gene040887:CDS |
| TCTTGTGATCACCACTAGTT+TGG | 0.363564 | 1.2:-18121247 | None:intergenic |
| TTCAGAAAGCATTGTTACTT+TGG | 0.377422 | 1.2:+18121048 | MS.gene040887:intron |
| CTGATGAGAAAACATTTATA+AGG | 0.380650 | 1.2:+18121699 | MS.gene040887:CDS |
| AGACTTTCTTATAAGTCTCT+TGG | 0.389577 | 1.2:+18123216 | MS.gene040887:CDS |
| TCACGAGGTGATGGTATAAC+TGG | 0.394074 | 1.2:-18119848 | None:intergenic |
| TTCAATCTCCTTAATTGTGA+TGG | 0.407105 | 1.2:-18121173 | None:intergenic |
| TGAAAGAAGCAGCACACATT+TGG | 0.408779 | 1.2:+18121730 | MS.gene040887:CDS |
| ACGGTATGAAGGTCCAGAAT+TGG | 0.411485 | 1.2:+18121613 | MS.gene040887:CDS |
| ATAGCTTGATTATCAACAAC+TGG | 0.421175 | 1.2:-18121125 | None:intergenic |
| GACTTTCTTATAAGTCTCTT+GGG | 0.422412 | 1.2:+18123217 | MS.gene040887:CDS |
| AATTACCTTGGCAAAGTACA+TGG | 0.439729 | 1.2:-18122392 | None:intergenic |
| AATCTCTGCAGATATTCGTT+TGG | 0.442007 | 1.2:-18120453 | None:intergenic |
| CTCGTACACCATCACAATTA+AGG | 0.458956 | 1.2:+18121165 | MS.gene040887:CDS |
| GCTACCTTAGCATCCCTACT+TGG | 0.465128 | 1.2:-18121083 | None:intergenic |
| ATTTGGCAAATCATTAGAAA+AGG | 0.470245 | 1.2:+18121778 | MS.gene040887:CDS |
| ACCTTAGCATCCCTACTTGG+AGG | 0.474400 | 1.2:-18121080 | None:intergenic |
| GTTAGTAGCACATCGTAGTA+TGG | 0.477722 | 1.2:-18122365 | None:intergenic |
| TATAACTGGAGGTACGGTTA+AGG | 0.480148 | 1.2:-18119834 | None:intergenic |
| TGATGATAGTAGACTAATAA+GGG | 0.480167 | 1.2:+18123081 | MS.gene040887:CDS |
| TCCAGAATTGGATAGTCTAA+TGG | 0.493738 | 1.2:+18121625 | MS.gene040887:CDS |
| AAATCAGGGGAGAAGAGAAT+AGG | 0.498158 | 1.2:+18121674 | MS.gene040887:CDS |
| CCCTCCAAGTAGGGATGCTA+AGG | 0.506284 | 1.2:+18121079 | MS.gene040887:CDS |
| GCAGATATTCGTTTGGAAAG+TGG | 0.508207 | 1.2:-18120446 | None:intergenic |
| CGAATATCTGCAGAGATTCG+TGG | 0.512778 | 1.2:+18120458 | MS.gene040887:CDS |
| GCTGTTAAATCAGATACATC+AGG | 0.517770 | 1.2:+18123184 | MS.gene040887:CDS |
| TTAGCATCTTCACGAGGTGA+TGG | 0.528260 | 1.2:-18119857 | None:intergenic |
| CCAAACTATTGTATAAATCA+GGG | 0.532319 | 1.2:+18121660 | MS.gene040887:CDS |
| AAGCTGCACAAAGCTTTCAA+AGG | 0.533060 | 1.2:+18119881 | MS.gene040887:CDS |
| GCGATAAAGAGTGAAACATC+TGG | 0.534844 | 1.2:+18122319 | MS.gene040887:CDS |
| TTATTCAAATCCTTGCTCAC+AGG | 0.541564 | 1.2:+18120369 | MS.gene040887:CDS |
| GCTGCATGACCCTCCAAGTA+GGG | 0.549565 | 1.2:+18121070 | MS.gene040887:CDS |
| GTAAGTACACCACGGTATGA+AGG | 0.550029 | 1.2:+18121602 | MS.gene040887:CDS |
| GTTCTGAATTCCTGTGAGCA+AGG | 0.563075 | 1.2:-18120379 | None:intergenic |
| TTTCAATGTCATGCTCAAGA+GGG | 0.576299 | 1.2:-18121223 | None:intergenic |
| CTCTCCCATGTACTTTGCCA+AGG | 0.580874 | 1.2:+18122387 | MS.gene040887:CDS |
| GGCTGCATGACCCTCCAAGT+AGG | 0.599790 | 1.2:+18121069 | MS.gene040887:CDS |
| TTCAATGTCATGCTCAAGAG+GGG | 0.603456 | 1.2:-18121222 | None:intergenic |
| TGATGGTATAACTGGAGGTA+CGG | 0.606172 | 1.2:-18119840 | None:intergenic |
| GACATTGAAAACCAAACTAG+TGG | 0.613215 | 1.2:+18121236 | MS.gene040887:CDS |
| AGAGATTCGTGGTCATCTCA+AGG | 0.613850 | 1.2:+18120469 | MS.gene040887:CDS |
| GTAGGGATGCTAAGGTAGCA+AGG | 0.621703 | 1.2:+18121087 | MS.gene040887:CDS |
| GAGGGGAATGATAATTTGAG+AGG | 0.626707 | 1.2:-18121205 | None:intergenic |
| CCTTAGCATCCCTACTTGGA+GGG | 0.633942 | 1.2:-18121079 | None:intergenic |
| ATTACCTTGGCAAAGTACAT+GGG | 0.642201 | 1.2:-18122391 | None:intergenic |
| AACTAGTGGTGATCACAAGA+AGG | 0.647816 | 1.2:+18121250 | MS.gene040887:CDS |
| CAAACTATTGTATAAATCAG+GGG | 0.654206 | 1.2:+18121661 | MS.gene040887:CDS |
| CGAGGTGATGGTATAACTGG+AGG | 0.665337 | 1.2:-18119845 | None:intergenic |
| AGCTTCTTAGCATCTTCACG+AGG | 0.687999 | 1.2:-18119863 | None:intergenic |
| TAATAAGGGTAATAGTGACA+AGG | 0.703755 | 1.2:+18123095 | MS.gene040887:CDS |
| AATTCTGGACCTTCATACCG+TGG | 0.708699 | 1.2:-18121611 | None:intergenic |
| TTGCATATGTAAGTACACCA+CGG | 0.759910 | 1.2:+18121594 | MS.gene040887:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTTATTTTATTTTTT+TGG | + | chr1.2:18121302-18121321 | MS.gene040887:intron | 0.0% |
| !! | AAAAAAAAAACATTATTGTT+TGG | + | chr1.2:18122985-18123004 | MS.gene040887:intron | 10.0% |
| !! | AAAAAAAAACATTATTGTTT+GGG | + | chr1.2:18122986-18123005 | MS.gene040887:intron | 10.0% |
| !! | ATTGTATTATTTATTGTTAT+AGG | + | chr1.2:18120323-18120342 | MS.gene040887:intron | 10.0% |
| !! | CAACTTAAAAAATATATAAA+TGG | - | chr1.2:18122598-18122617 | None:intergenic | 10.0% |
| !! | TTTAATTCAAAATTAGAAAA+TGG | - | chr1.2:18120861-18120880 | None:intergenic | 10.0% |
| !!! | TGTTTATTCTATAATTTTTA+TGG | + | chr1.2:18122790-18122809 | MS.gene040887:intron | 10.0% |
| !!! | TTTTAGATATTTTCTTATTA+AGG | + | chr1.2:18120513-18120532 | MS.gene040887:intron | 10.0% |
| !!! | TTTTTTTTATATTTTAAACC+GGG | - | chr1.2:18122969-18122988 | None:intergenic | 10.0% |
| !! | AAAAATAAAACTATTGAGAT+AGG | - | chr1.2:18121290-18121309 | None:intergenic | 15.0% |
| !! | AAAATAAAACTATTGAGATA+GGG | - | chr1.2:18121289-18121308 | None:intergenic | 15.0% |
| !! | ATATTAATAAACTTTGACAT+TGG | + | chr1.2:18122470-18122489 | MS.gene040887:intron | 15.0% |
| !!! | AAAATTTTGTATACTAATCA+TGG | + | chr1.2:18121547-18121566 | MS.gene040887:intron | 15.0% |
| !!! | AAACAATAATGTTTTGAAAT+GGG | - | chr1.2:18122732-18122751 | None:intergenic | 15.0% |
| !!! | AAACTTTTCTAATTATTTCT+AGG | - | chr1.2:18120673-18120692 | None:intergenic | 15.0% |
| !!! | AAATAACTAGACTTAATTTT+TGG | - | chr1.2:18120295-18120314 | None:intergenic | 15.0% |
| !!! | AACTTTTCTAATTATTTCTA+GGG | - | chr1.2:18120672-18120691 | None:intergenic | 15.0% |
| !!! | AATTTTACACTTATTTTCTA+AGG | - | chr1.2:18121417-18121436 | None:intergenic | 15.0% |
| !!! | GAATGTTATTTTACAATTTT+GGG | - | chr1.2:18121941-18121960 | None:intergenic | 15.0% |
| !!! | TGAATGTTATTTTACAATTT+TGG | - | chr1.2:18121942-18121961 | None:intergenic | 15.0% |
| !!! | TTTATATTTTGCATTGAATT+TGG | + | chr1.2:18120136-18120155 | MS.gene040887:intron | 15.0% |
| !! | AAATAAAACTATTGAGATAG+GGG | - | chr1.2:18121288-18121307 | None:intergenic | 20.0% |
| !! | AATGCAAACAATAATGTAAA+TGG | - | chr1.2:18122824-18122843 | None:intergenic | 20.0% |
| !! | ACATTCAAAATAATCTATCT+CGG | + | chr1.2:18121955-18121974 | MS.gene040887:intron | 20.0% |
| !! | ACTTCTATCATTAAAGTTTA+TGG | - | chr1.2:18122135-18122154 | None:intergenic | 20.0% |
| !! | AGTGTAAAATTCAATTATTG+AGG | + | chr1.2:18121426-18121445 | MS.gene040887:intron | 20.0% |
| !! | ATCACTTAATGAAAATTATG+AGG | + | chr1.2:18120219-18120238 | MS.gene040887:intron | 20.0% |
| !! | ATCTTACCATTAAAATTCAT+TGG | + | chr1.2:18122569-18122588 | MS.gene040887:intron | 20.0% |
| !! | ATGCTGAGTTAAAAAATAAA+AGG | - | chr1.2:18122532-18122551 | None:intergenic | 20.0% |
| !! | CGATATGAATTAAATTTCAT+AGG | - | chr1.2:18122079-18122098 | None:intergenic | 20.0% |
| !! | TATTTATTGTTATAGGTCTT+GGG | + | chr1.2:18120330-18120349 | MS.gene040887:intron | 20.0% |
| !! | TCTTACCATTAAAATTCATT+GGG | + | chr1.2:18122570-18122589 | MS.gene040887:intron | 20.0% |
| !! | TTAAAATACTCATGCATATT+TGG | + | chr1.2:18119927-18119946 | MS.gene040887:intron | 20.0% |
| !! | TTAATGAAAATTATGAGGAA+AGG | + | chr1.2:18120224-18120243 | MS.gene040887:intron | 20.0% |
| !! | TTACCAATTCACAAAAATTA+AGG | + | chr1.2:18122203-18122222 | MS.gene040887:intron | 20.0% |
| !! | TTATTTATTGTTATAGGTCT+TGG | + | chr1.2:18120329-18120348 | MS.gene040887:intron | 20.0% |
| !!! | ATAAGATTGAGAATTTTCAA+CGG | - | chr1.2:18120623-18120642 | None:intergenic | 20.0% |
| !!! | ATTTTGCAAAAGCTATAATT+TGG | - | chr1.2:18120053-18120072 | None:intergenic | 20.0% |
| !!! | CAAACAATAATGTTTTGAAA+TGG | - | chr1.2:18122733-18122752 | None:intergenic | 20.0% |
| !!! | CTTTATTATTTAGAGTGAAT+AGG | + | chr1.2:18121845-18121864 | MS.gene040887:intron | 20.0% |
| !!! | TATAGTTTTTGCTAAATTCA+TGG | - | chr1.2:18120180-18120199 | None:intergenic | 20.0% |
| !!! | TCTCAATCTTATTAATCTTT+TGG | + | chr1.2:18120631-18120650 | MS.gene040887:intron | 20.0% |
| ! | ATTTGGCAAATCATTAGAAA+AGG | + | chr1.2:18121778-18121797 | MS.gene040887:CDS | 25.0% |
| ! | CAAACTATTGTATAAATCAG+GGG | + | chr1.2:18121661-18121680 | MS.gene040887:CDS | 25.0% |
| ! | CCAAACTATTGTATAAATCA+GGG | + | chr1.2:18121660-18121679 | MS.gene040887:CDS | 25.0% |
| ! | CTGATGAGAAAACATTTATA+AGG | + | chr1.2:18121699-18121718 | MS.gene040887:CDS | 25.0% |
| ! | GCATAAGAAACTAAATAGAA+GGG | - | chr1.2:18122446-18122465 | None:intergenic | 25.0% |
| ! | TGATGATAGTAGACTAATAA+GGG | + | chr1.2:18123081-18123100 | MS.gene040887:CDS | 25.0% |
| ! | TGCATAAGAAACTAAATAGA+AGG | - | chr1.2:18122447-18122466 | None:intergenic | 25.0% |
| ! | TTGCATTCTTGAACAATTTA+GGG | + | chr1.2:18122638-18122657 | MS.gene040887:intron | 25.0% |
| ! | TTTCATACTCTTGTTGAATA+AGG | - | chr1.2:18120412-18120431 | None:intergenic | 25.0% |
| ! | TTTGCATTCTTGAACAATTT+AGG | + | chr1.2:18122637-18122656 | MS.gene040887:intron | 25.0% |
| !! | AGTCCTTAATTTTTGTGAAT+TGG | - | chr1.2:18122209-18122228 | None:intergenic | 25.0% |
| !! | GAATAAAGATTTTCAGTTTC+AGG | + | chr1.2:18120698-18120717 | MS.gene040887:intron | 25.0% |
| !! | GTTCAGTTTTCTGTTATATA+TGG | - | chr1.2:18120801-18120820 | None:intergenic | 25.0% |
| !! | TTCAACGATTTTCAAACAAT+AGG | - | chr1.2:18120911-18120930 | None:intergenic | 25.0% |
| !!! | AGTATCTCAATTTTTCGAAT+TGG | + | chr1.2:18121905-18121924 | MS.gene040887:intron | 25.0% |
| !!! | ATTTTTTAACTCAGCATGAA+GGG | + | chr1.2:18122535-18122554 | MS.gene040887:intron | 25.0% |
| !!! | CTGCAATTTTAAAGACTAAA+TGG | - | chr1.2:18120584-18120603 | None:intergenic | 25.0% |
| !!! | TATTTTTTAACTCAGCATGA+AGG | + | chr1.2:18122534-18122553 | MS.gene040887:intron | 25.0% |
| !!! | TTTCTTGTTGTACACTTTTT+GGG | + | chr1.2:18122498-18122517 | MS.gene040887:intron | 25.0% |
| !!! | TTTTCTTGTTGTACACTTTT+TGG | + | chr1.2:18122497-18122516 | MS.gene040887:intron | 25.0% |
| !!! | TTTTTAAGGCTAGAGTATAA+AGG | - | chr1.2:18121519-18121538 | None:intergenic | 25.0% |
| AAAACTGAACTCTATCCTAT+CGG | + | chr1.2:18120811-18120830 | MS.gene040887:intron | 30.0% | |
| AGACTTTCTTATAAGTCTCT+TGG | + | chr1.2:18123216-18123235 | MS.gene040887:CDS | 30.0% | |
| ATAGCTTGATTATCAACAAC+TGG | - | chr1.2:18121128-18121147 | None:intergenic | 30.0% | |
| CCCTGATTTATACAATAGTT+TGG | - | chr1.2:18121663-18121682 | None:intergenic | 30.0% | |
| CTATATGATGTCTTCATGTT+TGG | + | chr1.2:18121024-18121043 | MS.gene040887:intron | 30.0% | |
| CTGATGATAGTAGACTAATA+AGG | + | chr1.2:18123080-18123099 | MS.gene040887:CDS | 30.0% | |
| CTTCATGACAAAATATGAGT+TGG | - | chr1.2:18122299-18122318 | None:intergenic | 30.0% | |
| GACTTTCTTATAAGTCTCTT+GGG | + | chr1.2:18123217-18123236 | MS.gene040887:CDS | 30.0% | |
| GATTTAACAGCATGAGTTAA+TGG | - | chr1.2:18123175-18123194 | None:intergenic | 30.0% | |
| GCCAAACTATTGTATAAATC+AGG | + | chr1.2:18121659-18121678 | MS.gene040887:CDS | 30.0% | |
| GGCTTGTGAAATCATATAAA+TGG | + | chr1.2:18121323-18121342 | MS.gene040887:intron | 30.0% | |
| GTTTGAATATACGATGAGTT+TGG | - | chr1.2:18120101-18120120 | None:intergenic | 30.0% | |
| TAATAAGGGTAATAGTGACA+AGG | + | chr1.2:18123095-18123114 | MS.gene040887:CDS | 30.0% | |
| TGTCAATGCTTACAAATTTG+AGG | + | chr1.2:18122233-18122252 | MS.gene040887:intron | 30.0% | |
| TTCAATCTCCTTAATTGTGA+TGG | - | chr1.2:18121176-18121195 | None:intergenic | 30.0% | |
| TTGAATTTGGAAGAAACACA+CGG | + | chr1.2:18120149-18120168 | MS.gene040887:intron | 30.0% | |
| TTGACTGACGTTTACAATTT+CGG | - | chr1.2:18121882-18121901 | None:intergenic | 30.0% | |
| ! | AAGGGTATATCAATGCAAAT+GGG | - | chr1.2:18122428-18122447 | None:intergenic | 30.0% |
| ! | CAACTCATATTTTGTCATGA+AGG | + | chr1.2:18122297-18122316 | MS.gene040887:intron | 30.0% |
| ! | CTTGAACAATTTAGGGTTTA+GGG | + | chr1.2:18122645-18122664 | MS.gene040887:intron | 30.0% |
| ! | GAAGTGGCTAAATTCTAAAA+TGG | - | chr1.2:18120726-18120745 | None:intergenic | 30.0% |
| ! | TCTTGAACAATTTAGGGTTT+AGG | + | chr1.2:18122644-18122663 | MS.gene040887:intron | 30.0% |
| !! | TCATGTTTGGTGTCATTATA+GGG | + | chr1.2:18119988-18120007 | MS.gene040887:intron | 30.0% |
| !! | TTCAGAAAGCATTGTTACTT+TGG | + | chr1.2:18121048-18121067 | MS.gene040887:intron | 30.0% |
| !!! | ACACTTATTTTCTAAGGCTA+GGG | - | chr1.2:18121411-18121430 | None:intergenic | 30.0% |
| !!! | CTATAATACGCTGCTTTTAT+TGG | - | chr1.2:18123139-18123158 | None:intergenic | 30.0% |
| !!! | TACACTTATTTTCTAAGGCT+AGG | - | chr1.2:18121412-18121431 | None:intergenic | 30.0% |
| !!! | TTTTGAAATGGGAACCTTAT+GGG | - | chr1.2:18122721-18122740 | None:intergenic | 30.0% |
| AAAACTATTGAGATAGGGGA+TGG | - | chr1.2:18121284-18121303 | None:intergenic | 35.0% | |
| AAGTTACATGCAAAGATACC+CGG | + | chr1.2:18122948-18122967 | MS.gene040887:intron | 35.0% | |
| AATCTCTGCAGATATTCGTT+TGG | - | chr1.2:18120456-18120475 | None:intergenic | 35.0% | |
| AATTACCTTGGCAAAGTACA+TGG | - | chr1.2:18122395-18122414 | None:intergenic | 35.0% | |
| ACCATTAGACTATCCAATTC+TGG | - | chr1.2:18121629-18121648 | None:intergenic | 35.0% | |
| ATTACCTTGGCAAAGTACAT+GGG | - | chr1.2:18122394-18122413 | None:intergenic | 35.0% | |
| CTAATATGCATCAAACCTTG+TGG | - | chr1.2:18122921-18122940 | None:intergenic | 35.0% | |
| GACATTGAAAACCAAACTAG+TGG | + | chr1.2:18121236-18121255 | MS.gene040887:CDS | 35.0% | |
| GCAAAAATAGCTCATTGAAG+TGG | - | chr1.2:18120742-18120761 | None:intergenic | 35.0% | |
| GCAGCGTATTATAGTAGATA+TGG | + | chr1.2:18123145-18123164 | MS.gene040887:CDS | 35.0% | |
| GCTGTTAAATCAGATACATC+AGG | + | chr1.2:18123184-18123203 | MS.gene040887:CDS | 35.0% | |
| GGAGACACAAAAAATTACCT+TGG | - | chr1.2:18122407-18122426 | None:intergenic | 35.0% | |
| GTATCTTTGCATGTAACTTG+TGG | - | chr1.2:18122947-18122966 | None:intergenic | 35.0% | |
| GTTGGATTATGCACAATAAG+TGG | - | chr1.2:18122281-18122300 | None:intergenic | 35.0% | |
| TATAGTTAACCTAGTTGACG+CGG | - | chr1.2:18121009-18121028 | None:intergenic | 35.0% | |
| TATGCACAATAAGTGGAAAG+AGG | - | chr1.2:18122274-18122293 | None:intergenic | 35.0% | |
| TCCAGAATTGGATAGTCTAA+TGG | + | chr1.2:18121625-18121644 | MS.gene040887:CDS | 35.0% | |
| TTATAGGGTTGACGAAATCA+CGG | + | chr1.2:18120003-18120022 | MS.gene040887:intron | 35.0% | |
| TTATTCAAATCCTTGCTCAC+AGG | + | chr1.2:18120369-18120388 | MS.gene040887:CDS | 35.0% | |
| TTGCATATGTAAGTACACCA+CGG | + | chr1.2:18121594-18121613 | MS.gene040887:CDS | 35.0% | |
| TTTATCGTTTGCCATCCATT+TGG | + | chr1.2:18122893-18122912 | MS.gene040887:intron | 35.0% | |
| TTTCAATGTCATGCTCAAGA+GGG | - | chr1.2:18121226-18121245 | None:intergenic | 35.0% | |
| ! | ATTTTGCGCAAGTCAATGAA+GGG | + | chr1.2:18123049-18123068 | MS.gene040887:CDS | 35.0% |
| ! | GAAGGGTATATCAATGCAAA+TGG | - | chr1.2:18122429-18122448 | None:intergenic | 35.0% |
| ! | TGGAGCCCAATGAATTTTAA+TGG | - | chr1.2:18122578-18122597 | None:intergenic | 35.0% |
| ! | TTTTCAATGTCATGCTCAAG+AGG | - | chr1.2:18121227-18121246 | None:intergenic | 35.0% |
| !! | CTCATGTTTGGTGTCATTAT+AGG | + | chr1.2:18119987-18120006 | MS.gene040887:intron | 35.0% |
| !!! | GTTGTACACTTTTTGGGATT+TGG | + | chr1.2:18122504-18122523 | MS.gene040887:intron | 35.0% |
| !!! | GTTTTGAAATGGGAACCTTA+TGG | - | chr1.2:18122722-18122741 | None:intergenic | 35.0% |
| AAATCAGGGGAGAAGAGAAT+AGG | + | chr1.2:18121674-18121693 | MS.gene040887:CDS | 40.0% | |
| AACTAGTGGTGATCACAAGA+AGG | + | chr1.2:18121250-18121269 | MS.gene040887:CDS | 40.0% | |
| AACTCTGCGTACACTTCATT+TGG | + | chr1.2:18121761-18121780 | MS.gene040887:CDS | 40.0% | |
| AAGCTGCACAAAGCTTTCAA+AGG | + | chr1.2:18119881-18119900 | MS.gene040887:CDS | 40.0% | |
| ATCGATAACAACCCGATAAG+AGG | - | chr1.2:18120950-18120969 | None:intergenic | 40.0% | |
| CGATAAGATCTCCCTCTTAT+CGG | + | chr1.2:18120935-18120954 | MS.gene040887:intron | 40.0% | |
| CTCGTACACCATCACAATTA+AGG | + | chr1.2:18121165-18121184 | MS.gene040887:CDS | 40.0% | |
| GAGGGGAATGATAATTTGAG+AGG | - | chr1.2:18121208-18121227 | None:intergenic | 40.0% | |
| GATAAGATCTCCCTCTTATC+GGG | + | chr1.2:18120936-18120955 | MS.gene040887:intron | 40.0% | |
| GCAGATATTCGTTTGGAAAG+TGG | - | chr1.2:18120449-18120468 | None:intergenic | 40.0% | |
| GCGATAAAGAGTGAAACATC+TGG | + | chr1.2:18122319-18122338 | MS.gene040887:CDS | 40.0% | |
| GGAACCTTATGGGATCAAAT+GGG | - | chr1.2:18122711-18122730 | None:intergenic | 40.0% | |
| GTTAGTAGCACATCGTAGTA+TGG | - | chr1.2:18122368-18122387 | None:intergenic | 40.0% | |
| TCAAACCTTGTGGAACCAAA+TGG | - | chr1.2:18122911-18122930 | None:intergenic | 40.0% | |
| TCGATAACAACCCGATAAGA+GGG | - | chr1.2:18120949-18120968 | None:intergenic | 40.0% | |
| TCTTGGGTGTGACACAAAAA+GGG | + | chr1.2:18120346-18120365 | MS.gene040887:CDS | 40.0% | |
| TCTTGTGATCACCACTAGTT+TGG | - | chr1.2:18121250-18121269 | None:intergenic | 40.0% | |
| TGAAAGAAGCAGCACACATT+TGG | + | chr1.2:18121730-18121749 | MS.gene040887:CDS | 40.0% | |
| TGATGGTATAACTGGAGGTA+CGG | - | chr1.2:18119843-18119862 | None:intergenic | 40.0% | |
| TTCAATGTCATGCTCAAGAG+GGG | - | chr1.2:18121225-18121244 | None:intergenic | 40.0% | |
| ! | CGGTCAACTTTTAGTGTTAG+AGG | + | chr1.2:18121975-18121994 | MS.gene040887:intron | 40.0% |
| ! | GATTTTGCGCAAGTCAATGA+AGG | + | chr1.2:18123048-18123067 | MS.gene040887:intron | 40.0% |
| ! | TATAACTGGAGGTACGGTTA+AGG | - | chr1.2:18119837-18119856 | None:intergenic | 40.0% |
| !!! | ACATCTGGCTCTTTTATGAG+TGG | + | chr1.2:18122334-18122353 | MS.gene040887:CDS | 40.0% |
| AATTCTGGACCTTCATACCG+TGG | - | chr1.2:18121614-18121633 | None:intergenic | 45.0% | |
| ACCTTATGGGATCAAATGGG+CGG | - | chr1.2:18122708-18122727 | None:intergenic | 45.0% | |
| ACCTTGTGGAACCAAATGGA+TGG | - | chr1.2:18122907-18122926 | None:intergenic | 45.0% | |
| ACGGTATGAAGGTCCAGAAT+TGG | + | chr1.2:18121613-18121632 | MS.gene040887:CDS | 45.0% | |
| AGAGATTCGTGGTCATCTCA+AGG | + | chr1.2:18120469-18120488 | MS.gene040887:CDS | 45.0% | |
| AGCTTCTTAGCATCTTCACG+AGG | - | chr1.2:18119866-18119885 | None:intergenic | 45.0% | |
| CGAATATCTGCAGAGATTCG+TGG | + | chr1.2:18120458-18120477 | MS.gene040887:CDS | 45.0% | |
| GACACCAAACATGAGCAACA+TGG | - | chr1.2:18119982-18120001 | None:intergenic | 45.0% | |
| GACACCATGTTGCTCATGTT+TGG | + | chr1.2:18119975-18119994 | MS.gene040887:intron | 45.0% | |
| GACTTGCGCAAAATCTGCTA+AGG | - | chr1.2:18123043-18123062 | None:intergenic | 45.0% | |
| GGGAACCTTATGGGATCAAA+TGG | - | chr1.2:18122712-18122731 | None:intergenic | 45.0% | |
| GTAAGTACACCACGGTATGA+AGG | + | chr1.2:18121602-18121621 | MS.gene040887:CDS | 45.0% | |
| GTCTTGGGTGTGACACAAAA+AGG | + | chr1.2:18120345-18120364 | MS.gene040887:CDS | 45.0% | |
| TTAGCATCTTCACGAGGTGA+TGG | - | chr1.2:18119860-18119879 | None:intergenic | 45.0% | |
| TTGTAGCGCAAGTAACCGAT+AGG | - | chr1.2:18120829-18120848 | None:intergenic | 45.0% | |
| ! | CGCAAGTCAATGAAGGGTAT+TGG | + | chr1.2:18123055-18123074 | MS.gene040887:CDS | 45.0% |
| ! | GTTCTGAATTCCTGTGAGCA+AGG | - | chr1.2:18120382-18120401 | None:intergenic | 45.0% |
| ! | TCACGAGGTGATGGTATAAC+TGG | - | chr1.2:18119851-18119870 | None:intergenic | 45.0% |
| !! | GCAACATGGTGTCACAATGT+TGG | - | chr1.2:18119968-18119987 | None:intergenic | 45.0% |
| !!! | AATTTTACAATTATTTTTTA+AGG | - | chr1.2:18121533-18121552 | None:intergenic | 5.0% |
| !!! | ATTAATAATATTTTTATGTT+TGG | + | chr1.2:18121350-18121369 | MS.gene040887:intron | 5.0% |
| !!! | TTTTTTTTTATATTTTAAAC+CGG | - | chr1.2:18122970-18122989 | None:intergenic | 5.0% |
| ACCTTAGCATCCCTACTTGG+AGG | - | chr1.2:18121083-18121102 | None:intergenic | 50.0% | |
| ATCGTCTAACCGCGTCAACT+AGG | + | chr1.2:18120997-18121016 | MS.gene040887:intron | 50.0% | |
| CCTTAGCATCCCTACTTGGA+GGG | - | chr1.2:18121082-18121101 | None:intergenic | 50.0% | |
| CTCTCCCATGTACTTTGCCA+AGG | + | chr1.2:18122387-18122406 | MS.gene040887:CDS | 50.0% | |
| GCTACCTTAGCATCCCTACT+TGG | - | chr1.2:18121086-18121105 | None:intergenic | 50.0% | |
| GTAGGGATGCTAAGGTAGCA+AGG | + | chr1.2:18121087-18121106 | MS.gene040887:CDS | 50.0% | |
| ! | CGAGGTGATGGTATAACTGG+AGG | - | chr1.2:18119848-18119867 | None:intergenic | 50.0% |
| ! | GCCATCCATTTGGTTCCACA+AGG | + | chr1.2:18122903-18122922 | MS.gene040887:intron | 50.0% |
| CCCTCCAAGTAGGGATGCTA+AGG | + | chr1.2:18121079-18121098 | MS.gene040887:CDS | 55.0% | |
| GCCGCCCATTTGATCCCATA+AGG | + | chr1.2:18122704-18122723 | MS.gene040887:intron | 55.0% | |
| GCTGCATGACCCTCCAAGTA+GGG | + | chr1.2:18121070-18121089 | MS.gene040887:CDS | 55.0% | |
| GGCTGCATGACCCTCCAAGT+AGG | + | chr1.2:18121069-18121088 | MS.gene040887:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 18119827 | 18123252 | 18119827 | ID=MS.gene040887 |
| chr1.2 | mRNA | 18119827 | 18123252 | 18119827 | ID=MS.gene040887.t1;Parent=MS.gene040887 |
| chr1.2 | exon | 18119827 | 18119902 | 18119827 | ID=MS.gene040887.t1.exon1;Parent=MS.gene040887.t1 |
| chr1.2 | CDS | 18119827 | 18119902 | 18119827 | ID=cds.MS.gene040887.t1;Parent=MS.gene040887.t1 |
| chr1.2 | exon | 18120345 | 18120490 | 18120345 | ID=MS.gene040887.t1.exon2;Parent=MS.gene040887.t1 |
| chr1.2 | CDS | 18120345 | 18120490 | 18120345 | ID=cds.MS.gene040887.t1;Parent=MS.gene040887.t1 |
| chr1.2 | exon | 18121053 | 18121271 | 18121053 | ID=MS.gene040887.t1.exon3;Parent=MS.gene040887.t1 |
| chr1.2 | CDS | 18121053 | 18121271 | 18121053 | ID=cds.MS.gene040887.t1;Parent=MS.gene040887.t1 |
| chr1.2 | exon | 18121587 | 18121799 | 18121587 | ID=MS.gene040887.t1.exon4;Parent=MS.gene040887.t1 |
| chr1.2 | CDS | 18121587 | 18121799 | 18121587 | ID=cds.MS.gene040887.t1;Parent=MS.gene040887.t1 |
| chr1.2 | exon | 18122319 | 18122408 | 18122319 | ID=MS.gene040887.t1.exon5;Parent=MS.gene040887.t1 |
| chr1.2 | CDS | 18122319 | 18122408 | 18122319 | ID=cds.MS.gene040887.t1;Parent=MS.gene040887.t1 |
| chr1.2 | exon | 18123049 | 18123252 | 18123049 | ID=MS.gene040887.t1.exon6;Parent=MS.gene040887.t1 |
| chr1.2 | CDS | 18123049 | 18123252 | 18123049 | ID=cds.MS.gene040887.t1;Parent=MS.gene040887.t1 |
| Gene Sequence |
| Protein sequence |
