Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32653.t1 | XP_003603366.2 | 100 | 159 | 0 | 0 | 1 | 159 | 33 | 191 | 4.50E-84 | 320.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32653.t1 | Q9LFP0 | 77.1 | 157 | 36 | 0 | 1 | 157 | 33 | 189 | 5.8e-64 | 245.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32653.t1 | G7JAH8 | 100.0 | 159 | 0 | 0 | 1 | 159 | 33 | 191 | 3.2e-84 | 320.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene32653 | 0.85062 | 1.51E-60 | -1.69E-46 |
| MS.gene049350 | MS.gene32653 | 0.852137 | 5.62E-61 | -1.69E-46 |
| MS.gene049368 | MS.gene32653 | 0.814864 | 1.24E-51 | -1.69E-46 |
| MS.gene049411 | MS.gene32653 | 0.819757 | 9.82E-53 | -1.69E-46 |
| MS.gene049807 | MS.gene32653 | 0.837672 | 4.53E-57 | -1.69E-46 |
| MS.gene049887 | MS.gene32653 | 0.852219 | 5.33E-61 | -1.69E-46 |
| MS.gene050689 | MS.gene32653 | 0.809683 | 1.68E-50 | -1.69E-46 |
| MS.gene050752 | MS.gene32653 | 0.819707 | 1.01E-52 | -1.69E-46 |
| MS.gene050838 | MS.gene32653 | 0.87351 | 1.39E-67 | -1.69E-46 |
| MS.gene051003 | MS.gene32653 | 0.833097 | 6.49E-56 | -1.69E-46 |
| MS.gene051233 | MS.gene32653 | 0.807825 | 4.18E-50 | -1.69E-46 |
| MS.gene051234 | MS.gene32653 | 0.859577 | 3.76E-63 | -1.69E-46 |
| MS.gene051642 | MS.gene32653 | 0.80311 | 4.08E-49 | -1.69E-46 |
| MS.gene051700 | MS.gene32653 | 0.818633 | 1.77E-52 | -1.69E-46 |
| MS.gene051885 | MS.gene32653 | 0.819082 | 1.40E-52 | -1.69E-46 |
| MS.gene05188 | MS.gene32653 | 0.811252 | 7.68E-51 | -1.69E-46 |
| MS.gene051902 | MS.gene32653 | 0.805136 | 1.54E-49 | -1.69E-46 |
| MS.gene052072 | MS.gene32653 | 0.823026 | 1.73E-53 | -1.69E-46 |
| MS.gene052296 | MS.gene32653 | 0.801642 | 8.18E-49 | -1.69E-46 |
| MS.gene052307 | MS.gene32653 | 0.811444 | 6.98E-51 | -1.69E-46 |
| MS.gene052335 | MS.gene32653 | 0.838656 | 2.53E-57 | -1.69E-46 |
| MS.gene052463 | MS.gene32653 | 0.816287 | 5.98E-52 | -1.69E-46 |
| MS.gene052516 | MS.gene32653 | 0.814283 | 1.67E-51 | -1.69E-46 |
| MS.gene052947 | MS.gene32653 | 0.82307 | 1.69E-53 | -1.69E-46 |
| MS.gene053143 | MS.gene32653 | 0.806942 | 6.44E-50 | -1.69E-46 |
| MS.gene053144 | MS.gene32653 | 0.806835 | 6.78E-50 | -1.69E-46 |
| MS.gene053581 | MS.gene32653 | 0.849787 | 2.58E-60 | -1.69E-46 |
| MS.gene054004 | MS.gene32653 | 0.801773 | 7.69E-49 | -1.69E-46 |
| MS.gene054403 | MS.gene32653 | 0.817632 | 2.98E-52 | -1.69E-46 |
| MS.gene05458 | MS.gene32653 | 0.811337 | 7.36E-51 | -1.69E-46 |
| MS.gene054709 | MS.gene32653 | 0.80703 | 6.17E-50 | -1.69E-46 |
| MS.gene055311 | MS.gene32653 | 0.816316 | 5.89E-52 | -1.69E-46 |
| MS.gene055313 | MS.gene32653 | 0.807306 | 5.39E-50 | -1.69E-46 |
| MS.gene055465 | MS.gene32653 | 0.819853 | 9.34E-53 | -1.69E-46 |
| MS.gene055466 | MS.gene32653 | 0.818005 | 2.46E-52 | -1.69E-46 |
| MS.gene055468 | MS.gene32653 | 0.848508 | 5.86E-60 | -1.69E-46 |
| MS.gene055469 | MS.gene32653 | 0.83565 | 1.48E-56 | -1.69E-46 |
| MS.gene055513 | MS.gene32653 | 0.846819 | 1.71E-59 | -1.69E-46 |
| MS.gene055580 | MS.gene32653 | -0.827197 | 1.79E-54 | -1.69E-46 |
| MS.gene056043 | MS.gene32653 | -0.840711 | 7.37E-58 | -1.69E-46 |
| MS.gene056181 | MS.gene32653 | 0.811023 | 8.61E-51 | -1.69E-46 |
| MS.gene056308 | MS.gene32653 | 0.819212 | 1.31E-52 | -1.69E-46 |
| MS.gene056390 | MS.gene32653 | 0.83609 | 1.15E-56 | -1.69E-46 |
| MS.gene056522 | MS.gene32653 | -0.833274 | 5.86E-56 | -1.69E-46 |
| MS.gene057102 | MS.gene32653 | 0.82134 | 4.25E-53 | -1.69E-46 |
| MS.gene058339 | MS.gene32653 | 0.802581 | 5.24E-49 | -1.69E-46 |
| MS.gene058492 | MS.gene32653 | 0.818084 | 2.36E-52 | -1.69E-46 |
| MS.gene058639 | MS.gene32653 | 0.800272 | 1.56E-48 | -1.69E-46 |
| MS.gene058852 | MS.gene32653 | 0.841462 | 4.68E-58 | -1.69E-46 |
| MS.gene059171 | MS.gene32653 | 0.848514 | 5.84E-60 | -1.69E-46 |
| MS.gene059227 | MS.gene32653 | 0.847681 | 9.91E-60 | -1.69E-46 |
| MS.gene059778 | MS.gene32653 | 0.821274 | 4.40E-53 | -1.69E-46 |
| MS.gene06011 | MS.gene32653 | 0.809002 | 2.35E-50 | -1.69E-46 |
| MS.gene060763 | MS.gene32653 | 0.808166 | 3.54E-50 | -1.69E-46 |
| MS.gene061006 | MS.gene32653 | 0.806246 | 9.03E-50 | -1.69E-46 |
| MS.gene061100 | MS.gene32653 | 0.842057 | 3.26E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene32653 | MS.gene045117 | PPI |
| MS.gene79217 | MS.gene32653 | PPI |
| MS.gene32653 | MS.gene052207 | PPI |
| MS.gene32653 | MS.gene75475 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32653.t1 | MTR_3g106780 | 100.000 | 159 | 0 | 0 | 1 | 159 | 33 | 191 | 2.77e-113 | 319 |
| MS.gene32653.t1 | MTR_3g106780 | 97.183 | 142 | 4 | 0 | 1 | 142 | 33 | 174 | 6.34e-96 | 275 |
| MS.gene32653.t1 | MTR_3g103010 | 77.483 | 151 | 34 | 0 | 1 | 151 | 30 | 180 | 7.62e-82 | 239 |
| MS.gene32653.t1 | MTR_3g106780 | 100.000 | 116 | 0 | 0 | 1 | 116 | 33 | 148 | 9.77e-80 | 234 |
| MS.gene32653.t1 | MTR_5g012210 | 75.497 | 151 | 37 | 0 | 1 | 151 | 32 | 182 | 4.24e-79 | 233 |
| MS.gene32653.t1 | MTR_4g101460 | 71.523 | 151 | 43 | 0 | 1 | 151 | 1 | 151 | 5.30e-75 | 221 |
| MS.gene32653.t1 | MTR_3g106780 | 77.174 | 92 | 21 | 0 | 1 | 92 | 33 | 124 | 3.28e-43 | 140 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32653.t1 | AT5G11160 | 77.070 | 157 | 36 | 0 | 1 | 157 | 33 | 189 | 3.58e-84 | 246 |
| MS.gene32653.t1 | AT1G80050 | 75.159 | 157 | 39 | 0 | 1 | 157 | 1 | 157 | 1.83e-81 | 238 |
| MS.gene32653.t1 | AT1G80050 | 75.159 | 157 | 39 | 0 | 1 | 157 | 33 | 189 | 6.21e-81 | 237 |
| MS.gene32653.t1 | AT4G12440 | 74.510 | 153 | 39 | 0 | 1 | 153 | 30 | 182 | 8.59e-81 | 237 |
| MS.gene32653.t1 | AT4G12440 | 74.510 | 153 | 39 | 0 | 1 | 153 | 30 | 182 | 8.59e-81 | 237 |
| MS.gene32653.t1 | AT4G22570 | 73.856 | 153 | 40 | 0 | 1 | 153 | 31 | 183 | 2.92e-78 | 230 |
| MS.gene32653.t1 | AT1G27450 | 70.861 | 151 | 44 | 0 | 1 | 151 | 30 | 180 | 1.18e-75 | 224 |
| MS.gene32653.t1 | AT1G27450 | 70.861 | 151 | 44 | 0 | 1 | 151 | 30 | 180 | 1.18e-75 | 224 |
| MS.gene32653.t1 | AT1G27450 | 70.861 | 151 | 44 | 0 | 1 | 151 | 90 | 240 | 2.63e-75 | 225 |
| MS.gene32653.t1 | AT1G27450 | 60.795 | 176 | 44 | 1 | 1 | 151 | 106 | 281 | 4.17e-69 | 211 |
| MS.gene32653.t1 | AT5G11160 | 77.586 | 116 | 26 | 0 | 1 | 116 | 33 | 148 | 2.42e-61 | 187 |
| MS.gene32653.t1 | AT4G12440 | 85.075 | 67 | 10 | 0 | 1 | 67 | 30 | 96 | 6.01e-37 | 122 |
| MS.gene32653.t1 | AT4G12440 | 85.075 | 67 | 10 | 0 | 1 | 67 | 30 | 96 | 6.01e-37 | 122 |
| MS.gene32653.t1 | AT4G22570 | 79.412 | 68 | 14 | 0 | 1 | 68 | 31 | 98 | 5.88e-34 | 115 |
Find 33 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGGGACGGTGTAAACTTCT+TGG | 0.284373 | 3.1:-84617219 | MS.gene32653:CDS |
| CGCTGTCCAACCTGGTGAAC+GGG | 0.371582 | 3.1:-84618191 | MS.gene32653:CDS |
| TCTGCAGTTGCGTTGGGAAT+TGG | 0.405636 | 3.1:-84619719 | MS.gene32653:CDS |
| GAAGCAAGAGGGTTTGTGTT+TGG | 0.411897 | 3.1:-84619743 | MS.gene32653:CDS |
| GATTGGTGTGCCTGAGGTTA+AGG | 0.414050 | 3.1:-84617943 | MS.gene32653:intron |
| GTGGAATGTGCTTGTGTGAT+TGG | 0.438632 | 3.1:-84617960 | MS.gene32653:CDS |
| ATCGACGACTTGGTTGCAAC+AGG | 0.448378 | 3.1:-84618160 | MS.gene32653:CDS |
| TTTGGTTCTGCAGTTGCGTT+GGG | 0.461360 | 3.1:-84619725 | MS.gene32653:CDS |
| AGCTTGCGAGGTTTGCGTAA+AGG | 0.464262 | 3.1:+84619683 | None:intergenic |
| GCGCTGTCCAACCTGGTGAA+CGG | 0.478342 | 3.1:-84618192 | MS.gene32653:CDS |
| ACGCAAACCTCGCAAGCTAC+CGG | 0.479212 | 3.1:-84619678 | MS.gene32653:CDS |
| GTTTGGTTCTGCAGTTGCGT+TGG | 0.491474 | 3.1:-84619726 | MS.gene32653:CDS |
| TGCAACAGGTGGAACTTTGT+CGG | 0.495035 | 3.1:-84618146 | MS.gene32653:CDS |
| ATGCACATTTCAGTTGTTGC+TGG | 0.495656 | 3.1:-84619929 | MS.gene32653:intron |
| ACAGGTGGAACTTTGTCGGC+AGG | 0.532728 | 3.1:-84618142 | MS.gene32653:CDS |
| GGCTATAGTTATCGACGACT+TGG | 0.544698 | 3.1:-84618170 | MS.gene32653:CDS |
| CATGTCGGCGCTGTCCAACC+TGG | 0.547674 | 3.1:-84618199 | MS.gene32653:CDS |
| CGCAAACCTCGCAAGCTACC+GGG | 0.550896 | 3.1:-84619677 | MS.gene32653:intron |
| GGCTCCACAAGCACATAAAG+TGG | 0.560359 | 3.1:+84617192 | None:intergenic |
| CTGAGCCATACCTTAACCTC+AGG | 0.561630 | 3.1:+84617933 | None:intergenic |
| ATAACTATAGCCCGTTCACC+AGG | 0.563626 | 3.1:+84618181 | None:intergenic |
| ACGTGCTAAGGCTGAAGTAG+TGG | 0.569286 | 3.1:-84617979 | MS.gene32653:CDS |
| AAAGCCACTTTATGTGCTTG+TGG | 0.574929 | 3.1:-84617196 | MS.gene32653:CDS |
| GTTGTACCCGGTAGCTTGCG+AGG | 0.575231 | 3.1:+84619671 | None:intergenic |
| GACGACTTGGTTGCAACAGG+TGG | 0.588976 | 3.1:-84618157 | MS.gene32653:CDS |
| CAATTATGTAGAACGTGCTA+AGG | 0.591327 | 3.1:-84617991 | MS.gene32653:intron |
| CTATAGCCCGTTCACCAGGT+TGG | 0.604880 | 3.1:+84618185 | None:intergenic |
| TTGTGTGATTGGTGTGCCTG+AGG | 0.609251 | 3.1:-84617949 | MS.gene32653:CDS |
| ATGCAGGAATTGAAGCAAGA+GGG | 0.621946 | 3.1:-84619754 | MS.gene32653:intron |
| GACATTGTTGTTAGATCACA+AGG | 0.630489 | 3.1:-84619996 | MS.gene32653:CDS |
| TATGCAGGAATTGAAGCAAG+AGG | 0.643982 | 3.1:-84619755 | MS.gene32653:intron |
| GATTGTTTAGAAATGCATGT+CGG | 0.652967 | 3.1:-84618214 | MS.gene32653:CDS |
| AAGCATTCATCTACTTGACG+TGG | 0.677392 | 3.1:+84617171 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATTAATAAATAAATAAA+TGG | + | chr3.1:84617977-84617996 | None:intergenic | 0.0% |
| !! | TATTTATTAATAAACACTTT+CGG | - | chr3.1:84617983-84618002 | MS.gene32653:CDS | 10.0% |
| !! | TTATTTATATTTATTTAGGA+GGG | - | chr3.1:84617777-84617796 | MS.gene32653:intron | 10.0% |
| !! | TTTATTTATATTTATTTAGG+AGG | - | chr3.1:84617776-84617795 | MS.gene32653:intron | 10.0% |
| !!! | AAAAGAGAAATTTTTTATTT+TGG | - | chr3.1:84617349-84617368 | MS.gene32653:intron | 10.0% |
| !!! | AAAGAGAAATTTTTTATTTT+GGG | - | chr3.1:84617350-84617369 | MS.gene32653:intron | 10.0% |
| !!! | AATAAACTCAAATAAAATTT+TGG | + | chr3.1:84617839-84617858 | None:intergenic | 10.0% |
| !!! | ATTTGTATTTATTCATTTTT+TGG | + | chr3.1:84619364-84619383 | None:intergenic | 10.0% |
| !!! | TATTTGTATTTATTCATTTT+TGG | + | chr3.1:84619365-84619384 | None:intergenic | 10.0% |
| !! | AATAAAAATGTTGATGTATT+TGG | + | chr3.1:84617748-84617767 | None:intergenic | 15.0% |
| !! | ACAGAAATTAAATAAAAAAG+GGG | + | chr3.1:84617379-84617398 | None:intergenic | 15.0% |
| !! | ATTTATTAATAAACACTTTC+GGG | - | chr3.1:84617984-84618003 | MS.gene32653:intron | 15.0% |
| !! | CACAGAAATTAAATAAAAAA+GGG | + | chr3.1:84617380-84617399 | None:intergenic | 15.0% |
| !! | TATTTATATTTATTTAGGAG+GGG | - | chr3.1:84617778-84617797 | MS.gene32653:intron | 15.0% |
| !! | TCACAGAAATTAAATAAAAA+AGG | + | chr3.1:84617381-84617400 | None:intergenic | 15.0% |
| !! | TTCAAATAAGATTAATAACA+AGG | + | chr3.1:84619902-84619921 | None:intergenic | 15.0% |
| !!! | TTAAATTTCTATCTTGTTAT+AGG | - | chr3.1:84619501-84619520 | MS.gene32653:intron | 15.0% |
| !! | AAGTTGTATGTTATATGATA+GGG | - | chr3.1:84618604-84618623 | MS.gene32653:intron | 20.0% |
| !! | AATGAAACATATCAAAGTTT+AGG | + | chr3.1:84618900-84618919 | None:intergenic | 20.0% |
| !! | ACATATACTATTTAACTCAA+AGG | + | chr3.1:84618717-84618736 | None:intergenic | 20.0% |
| !! | ACCGAATAGTATATATATAT+TGG | + | chr3.1:84618353-84618372 | None:intergenic | 20.0% |
| !! | GAGTTTATTCAAAGAATATT+AGG | - | chr3.1:84617850-84617869 | MS.gene32653:intron | 20.0% |
| !! | GCCAATATATATATACTATT+CGG | - | chr3.1:84618349-84618368 | MS.gene32653:intron | 20.0% |
| !! | GCTAAATATAAGAAAAAGTT+GGG | - | chr3.1:84617684-84617703 | MS.gene32653:intron | 20.0% |
| !! | TAAATAGTATATGTTTGGTT+TGG | - | chr3.1:84618723-84618742 | MS.gene32653:intron | 20.0% |
| !! | TAAGTTGTATGTTATATGAT+AGG | - | chr3.1:84618603-84618622 | MS.gene32653:intron | 20.0% |
| !! | TATATATATACTATTCGGTA+CGG | - | chr3.1:84618354-84618373 | MS.gene32653:intron | 20.0% |
| !! | TGAGTTAAATAGTATATGTT+TGG | - | chr3.1:84618718-84618737 | MS.gene32653:intron | 20.0% |
| !! | TGATTTAATGTAATTAGGTT+TGG | - | chr3.1:84617398-84617417 | MS.gene32653:intron | 20.0% |
| !! | TGCTAAATATAAGAAAAAGT+TGG | - | chr3.1:84617683-84617702 | MS.gene32653:intron | 20.0% |
| !! | TTATAATTGTTCATTGAATC+TGG | - | chr3.1:84619130-84619149 | MS.gene32653:intron | 20.0% |
| !! | TTCTGTGATTTAATGTAATT+AGG | - | chr3.1:84617393-84617412 | MS.gene32653:intron | 20.0% |
| !!! | AAAGAAAGCATAAAGTATAT+TGG | + | chr3.1:84619165-84619184 | None:intergenic | 20.0% |
| !!! | AAGAAAGCATAAAGTATATT+GGG | + | chr3.1:84619164-84619183 | None:intergenic | 20.0% |
| !!! | AATCTTATTTGAAATCATGA+TGG | - | chr3.1:84619909-84619928 | MS.gene32653:intron | 20.0% |
| !!! | ACTTTTTCTTATATTTAGCA+CGG | + | chr3.1:84617683-84617702 | None:intergenic | 20.0% |
| !!! | CAATATTTTCAAATTGATCA+TGG | - | chr3.1:84618377-84618396 | MS.gene32653:intron | 20.0% |
| !!! | GAAAAATATTCTCTAGAATA+CGG | - | chr3.1:84618939-84618958 | MS.gene32653:intron | 20.0% |
| !!! | TGAAATTTCTATCTTGTTAT+AGG | - | chr3.1:84619313-84619332 | MS.gene32653:intron | 20.0% |
| ! | AAATCATCGTCAATAATCAT+TGG | + | chr3.1:84618773-84618792 | None:intergenic | 25.0% |
| ! | GATGTATGAATATTCAATGT+GGG | - | chr3.1:84618205-84618224 | MS.gene32653:CDS | 25.0% |
| ! | TAACAAGATAGAAATTTCAG+AGG | + | chr3.1:84619312-84619331 | None:intergenic | 25.0% |
| ! | TATGTACAACAAATTTGAAG+TGG | + | chr3.1:84619625-84619644 | None:intergenic | 25.0% |
| ! | TCTGTTTAACCAAACTAATT+GGG | - | chr3.1:84618568-84618587 | MS.gene32653:intron | 25.0% |
| ! | TGATGTATGAATATTCAATG+TGG | - | chr3.1:84618204-84618223 | MS.gene32653:CDS | 25.0% |
| ! | TGATTCATACAATTTCAATC+AGG | + | chr3.1:84618508-84618527 | None:intergenic | 25.0% |
| ! | TTAAAAATGTTAAGGAGAGT+TGG | + | chr3.1:84619834-84619853 | None:intergenic | 25.0% |
| ! | TTCTGTTTAACCAAACTAAT+TGG | - | chr3.1:84618567-84618586 | MS.gene32653:intron | 25.0% |
| !! | AAACAAATTTGAAGTCCAAT+AGG | + | chr3.1:84619435-84619454 | None:intergenic | 25.0% |
| !! | ACTAAACTTTTATGTGGAAT+GGG | - | chr3.1:84617616-84617635 | MS.gene32653:intron | 25.0% |
| !! | AGAAAGCATAAAGTATATTG+GGG | + | chr3.1:84619163-84619182 | None:intergenic | 25.0% |
| !! | AGTAGTACTAAACTTTTATG+TGG | - | chr3.1:84617610-84617629 | MS.gene32653:intron | 25.0% |
| !! | ATGTTATATGATAGGGATTT+TGG | - | chr3.1:84618611-84618630 | MS.gene32653:intron | 25.0% |
| !! | CTTTGATATGTTTCATTTTC+AGG | - | chr3.1:84618903-84618922 | MS.gene32653:intron | 25.0% |
| !! | CTTTTTCTTATATTTAGCAC+GGG | + | chr3.1:84617682-84617701 | None:intergenic | 25.0% |
| !! | TACTAAACTTTTATGTGGAA+TGG | - | chr3.1:84617615-84617634 | MS.gene32653:intron | 25.0% |
| !! | TTAATGTAATTAGGTTTGGT+TGG | - | chr3.1:84617402-84617421 | MS.gene32653:intron | 25.0% |
| AAACTAATTGGGGCTTAATT+TGG | - | chr3.1:84618579-84618598 | MS.gene32653:intron | 30.0% | |
| AAATTAAGCCCCAATTAGTT+TGG | + | chr3.1:84618580-84618599 | None:intergenic | 30.0% | |
| AACAAAAAAAGTAGTGCATG+AGG | + | chr3.1:84617297-84617316 | None:intergenic | 30.0% | |
| AATAAACACTTTCGGGATAA+AGG | - | chr3.1:84617991-84618010 | MS.gene32653:intron | 30.0% | |
| ACAAAAAAAGTAGTGCATGA+GGG | + | chr3.1:84617296-84617315 | None:intergenic | 30.0% | |
| ACTTTCCTCTTAGATATTGT+GGG | + | chr3.1:84618124-84618143 | None:intergenic | 30.0% | |
| AGGTACTCTTAAAAGCTTAA+AGG | - | chr3.1:84619333-84619352 | MS.gene32653:intron | 30.0% | |
| ATAAGTCAAAAAATGACGCA+GGG | + | chr3.1:84619114-84619133 | None:intergenic | 30.0% | |
| ATAGATACGTTCTACAATTC+AGG | + | chr3.1:84618805-84618824 | None:intergenic | 30.0% | |
| CTGTTTAACCAAACTAATTG+GGG | - | chr3.1:84618569-84618588 | MS.gene32653:intron | 30.0% | |
| GATTGTTTAGAAATGCATGT+CGG | - | chr3.1:84618966-84618985 | MS.gene32653:intron | 30.0% | |
| TAGATACGTTCTACAATTCA+GGG | + | chr3.1:84618804-84618823 | None:intergenic | 30.0% | |
| TATAAGTCAAAAAATGACGC+AGG | + | chr3.1:84619115-84619134 | None:intergenic | 30.0% | |
| TATATTTATTTAGGAGGGGA+TGG | - | chr3.1:84617782-84617801 | MS.gene32653:intron | 30.0% | |
| TGAAATTGTATGAATCAACC+AGG | - | chr3.1:84618511-84618530 | MS.gene32653:intron | 30.0% | |
| TTCATACAATTTCAATCAGG+AGG | + | chr3.1:84618505-84618524 | None:intergenic | 30.0% | |
| TTCCATCACATAAAGTCAAT+TGG | - | chr3.1:84618068-84618087 | MS.gene32653:intron | 30.0% | |
| ! | ATATCCTTATAGACTTGCTT+AGG | - | chr3.1:84619681-84619700 | MS.gene32653:CDS | 30.0% |
| ! | CAACAAATTTGAAGTGGAAT+AGG | + | chr3.1:84619619-84619638 | None:intergenic | 30.0% |
| ! | CATCAAATTGATGATCAGAT+TGG | - | chr3.1:84618403-84618422 | MS.gene32653:intron | 30.0% |
| ! | CTGAATTATTGATAGCCTAT+TGG | - | chr3.1:84619417-84619436 | MS.gene32653:intron | 30.0% |
| ! | GTTAAGACCTTTAAGCTTTT+AGG | + | chr3.1:84619531-84619550 | None:intergenic | 30.0% |
| ! | TATCCTTATAGACTTGCTTA+GGG | - | chr3.1:84619682-84619701 | MS.gene32653:CDS | 30.0% |
| !! | AGGAATAAAACTTTTAGGTG+TGG | - | chr3.1:84619058-84619077 | MS.gene32653:intron | 30.0% |
| !!! | AATGAAGCCTTCTTTTTTCA+GGG | - | chr3.1:84619943-84619962 | MS.gene32653:CDS | 30.0% |
| !!! | TAATGAAGCCTTCTTTTTTC+AGG | - | chr3.1:84619942-84619961 | MS.gene32653:CDS | 30.0% |
| AATTGTATGAATCAACCAGG+TGG | - | chr3.1:84618514-84618533 | MS.gene32653:intron | 35.0% | |
| AGGTACTCCTAAAAGCTTAA+AGG | - | chr3.1:84619521-84619540 | MS.gene32653:intron | 35.0% | |
| AGTGAAACAAATGTATGTGC+TGG | - | chr3.1:84618269-84618288 | MS.gene32653:intron | 35.0% | |
| ATGAACAGAAATGTTGTACC+CGG | + | chr3.1:84617524-84617543 | None:intergenic | 35.0% | |
| ATGTGATGTTCATTACTGTG+TGG | - | chr3.1:84617888-84617907 | MS.gene32653:intron | 35.0% | |
| ATTACTTGTTCACTTGTGCT+CGG | + | chr3.1:84619663-84619682 | None:intergenic | 35.0% | |
| CAATTATGTAGAACGTGCTA+AGG | - | chr3.1:84619189-84619208 | MS.gene32653:intron | 35.0% | |
| CACTTTCCTCTTAGATATTG+TGG | + | chr3.1:84618125-84618144 | None:intergenic | 35.0% | |
| CTTAGCACGTTCTACATAAT+TGG | + | chr3.1:84619191-84619210 | None:intergenic | 35.0% | |
| TAACCCTAAGCAAGTCTATA+AGG | + | chr3.1:84619688-84619707 | None:intergenic | 35.0% | |
| TAAGTCAAAAAATGACGCAG+GGG | + | chr3.1:84619113-84619132 | None:intergenic | 35.0% | |
| TGGAGGTAAACGTATCTAAT+TGG | - | chr3.1:84618534-84618553 | MS.gene32653:intron | 35.0% | |
| TTGATTGAACTTAAGCACAC+TGG | + | chr3.1:84618651-84618670 | None:intergenic | 35.0% | |
| TTTCTTATATTTAGCACGGG+AGG | + | chr3.1:84617679-84617698 | None:intergenic | 35.0% | |
| ! | AACTTTTATGTGGAATGGGA+TGG | - | chr3.1:84617620-84617639 | MS.gene32653:intron | 35.0% |
| ! | AGCCAATTGACTTTATGTGA+TGG | + | chr3.1:84618073-84618092 | None:intergenic | 35.0% |
| ! | GACATTGTTGTTAGATCACA+AGG | - | chr3.1:84617184-84617203 | MS.gene32653:CDS | 35.0% |
| ! | TCGGCAGGAATAAAACTTTT+AGG | - | chr3.1:84619053-84619072 | MS.gene32653:intron | 35.0% |
| ! | TTGTTCATTGAATCTGGTTC+TGG | - | chr3.1:84619136-84619155 | MS.gene32653:intron | 35.0% |
| ! | TTTTCCTCTTGATCTGCATT+GGG | - | chr3.1:84618319-84618338 | MS.gene32653:intron | 35.0% |
| ! | TTTTTCCTCTTGATCTGCAT+TGG | - | chr3.1:84618318-84618337 | MS.gene32653:intron | 35.0% |
| !! | ATATTGTGGGCTAGTTAACT+AGG | + | chr3.1:84618111-84618130 | None:intergenic | 35.0% |
| !! | TATATGTTTGGTTTGGTAGC+TGG | - | chr3.1:84618730-84618749 | MS.gene32653:intron | 35.0% |
| AAAAAAGTAGTGCATGAGGG+AGG | + | chr3.1:84617293-84617312 | None:intergenic | 40.0% | |
| AAAAAGTAGTGCATGAGGGA+GGG | + | chr3.1:84617292-84617311 | None:intergenic | 40.0% | |
| AAGCATTCATCTACTTGACG+TGG | + | chr3.1:84620012-84620031 | None:intergenic | 40.0% | |
| ACTAGCCCACAATATCTAAG+AGG | - | chr3.1:84618116-84618135 | MS.gene32653:intron | 40.0% | |
| AGGAGTGATCAAGTTACTTC+AGG | + | chr3.1:84618485-84618504 | None:intergenic | 40.0% | |
| ATCAATGATGTGCGGTGTAA+AGG | + | chr3.1:84619776-84619795 | None:intergenic | 40.0% | |
| ATGCACATTTCAGTTGTTGC+TGG | - | chr3.1:84617251-84617270 | MS.gene32653:intron | 40.0% | |
| ATGCAGGAATTGAAGCAAGA+GGG | - | chr3.1:84617426-84617445 | MS.gene32653:intron | 40.0% | |
| CAAGTTTCAGCAGCTAAAAG+TGG | + | chr3.1:84617588-84617607 | None:intergenic | 40.0% | |
| CATTTCAGTTGTTGCTGGTA+TGG | - | chr3.1:84617256-84617275 | MS.gene32653:intron | 40.0% | |
| GGAAAAGGATCAATGATGTG+CGG | + | chr3.1:84619784-84619803 | None:intergenic | 40.0% | |
| TATGCAGGAATTGAAGCAAG+AGG | - | chr3.1:84617425-84617444 | MS.gene32653:intron | 40.0% | |
| TGATGTTCATTACTGTGTGG+AGG | - | chr3.1:84617891-84617910 | MS.gene32653:intron | 40.0% | |
| TTACTTGTTCACTTGTGCTC+GGG | + | chr3.1:84619662-84619681 | None:intergenic | 40.0% | |
| TTATATTTAGCACGGGAGGA+GGG | + | chr3.1:84617675-84617694 | None:intergenic | 40.0% | |
| TTCTCCTGTTGTCGATATGA+GGG | - | chr3.1:84619724-84619743 | MS.gene32653:CDS | 40.0% | |
| ! | AAAGCCACTTTATGTGCTTG+TGG | - | chr3.1:84619984-84620003 | MS.gene32653:CDS | 40.0% |
| ! | AGGGGATGGAGTATTATCTT+TGG | - | chr3.1:84617796-84617815 | MS.gene32653:intron | 40.0% |
| ! | ATTAGGTTTGGTTGGTATGC+AGG | - | chr3.1:84617410-84617429 | MS.gene32653:intron | 40.0% |
| ! | GCTGGTATTGTTGCTTAGTT+TGG | - | chr3.1:84618287-84618306 | MS.gene32653:intron | 40.0% |
| ! | GTCTTTGTTTGCATTCACAG+TGG | + | chr3.1:84618857-84618876 | None:intergenic | 40.0% |
| ! | TGTGATGGAACAACCAAAGT+AGG | + | chr3.1:84618058-84618077 | None:intergenic | 40.0% |
| !!! | AAGCCTTCTTTTTTCAGGGA+CGG | - | chr3.1:84619947-84619966 | MS.gene32653:CDS | 40.0% |
| ACACCGTCCCTGAAAAAAGA+AGG | + | chr3.1:84619953-84619972 | None:intergenic | 45.0% | |
| ATAACTATAGCCCGTTCACC+AGG | + | chr3.1:84619002-84619021 | None:intergenic | 45.0% | |
| CTTATATTTAGCACGGGAGG+AGG | + | chr3.1:84617676-84617695 | None:intergenic | 45.0% | |
| CTTCTCCTGTTGTCGATATG+AGG | - | chr3.1:84619723-84619742 | MS.gene32653:CDS | 45.0% | |
| GAAGCAAGAGGGTTTGTGTT+TGG | - | chr3.1:84617437-84617456 | MS.gene32653:intron | 45.0% | |
| GGAACAACCAAAGTAGGACA+AGG | + | chr3.1:84618052-84618071 | None:intergenic | 45.0% | |
| GGCTATAGTTATCGACGACT+TGG | - | chr3.1:84619010-84619029 | MS.gene32653:intron | 45.0% | |
| GTGGAATGTGCTTGTGTGAT+TGG | - | chr3.1:84619220-84619239 | MS.gene32653:intron | 45.0% | |
| TAGATACGTTTACCTCCACC+TGG | + | chr3.1:84618532-84618551 | None:intergenic | 45.0% | |
| TGAGTTATTCCACTGTGCTG+CGG | - | chr3.1:84618827-84618846 | MS.gene32653:intron | 45.0% | |
| TGCAACAGGTGGAACTTTGT+CGG | - | chr3.1:84619034-84619053 | MS.gene32653:intron | 45.0% | |
| TGTATGAATCAACCAGGTGG+AGG | - | chr3.1:84618517-84618536 | MS.gene32653:intron | 45.0% | |
| TTAAGGAGAGTTGGATCTCC+AGG | + | chr3.1:84619825-84619844 | None:intergenic | 45.0% | |
| TTGACCCAATGCAGATCAAG+AGG | + | chr3.1:84618326-84618345 | None:intergenic | 45.0% | |
| TTTCGGGATAAAGGCTGTCA+TGG | - | chr3.1:84618000-84618019 | MS.gene32653:intron | 45.0% | |
| !! | TTTGGTTCTGCAGTTGCGTT+GGG | - | chr3.1:84617455-84617474 | MS.gene32653:intron | 45.0% |
| !! | AAATAAATATAAATAAAGTT+AGG | + | chr3.1:84617773-84617792 | None:intergenic | 5.0% |
| !!! | AACTTTATTTATATTTATTT+AGG | - | chr3.1:84617773-84617792 | MS.gene32653:intron | 5.0% |
| !!! | ATTTTTTATTAAAAATGTTA+AGG | + | chr3.1:84619842-84619861 | None:intergenic | 5.0% |
| ACACCAACCCCGTTGTCAAA+TGG | + | chr3.1:84617647-84617666 | None:intergenic | 50.0% | |
| ACGTGCTAAGGCTGAAGTAG+TGG | - | chr3.1:84619201-84619220 | MS.gene32653:intron | 50.0% | |
| AGCTTGCGAGGTTTGCGTAA+AGG | + | chr3.1:84617500-84617519 | None:intergenic | 50.0% | |
| CACCAACCCCGTTGTCAAAT+GGG | + | chr3.1:84617646-84617665 | None:intergenic | 50.0% | |
| CAGGGACGGTGTAAACTTCT+TGG | - | chr3.1:84619961-84619980 | MS.gene32653:CDS | 50.0% | |
| CTGAGCCATACCTTAACCTC+AGG | + | chr3.1:84619250-84619269 | None:intergenic | 50.0% | |
| GATTGGTGTGCCTGAGGTTA+AGG | - | chr3.1:84619237-84619256 | MS.gene32653:intron | 50.0% | |
| GGCTCCACAAGCACATAAAG+TGG | + | chr3.1:84619991-84620010 | None:intergenic | 50.0% | |
| GTAGCCCTCATATCGACAAC+AGG | + | chr3.1:84619731-84619750 | None:intergenic | 50.0% | |
| GTGTGCCTGAGGTTAAGGTA+TGG | - | chr3.1:84619242-84619261 | MS.gene32653:intron | 50.0% | |
| TCTGCAGTTGCGTTGGGAAT+TGG | - | chr3.1:84617461-84617480 | MS.gene32653:intron | 50.0% | |
| TGGGATGGCCCATTTGACAA+CGG | - | chr3.1:84617635-84617654 | MS.gene32653:intron | 50.0% | |
| TGTCGATATGAGGGCTACGT+TGG | - | chr3.1:84619733-84619752 | MS.gene32653:CDS | 50.0% | |
| TTGTGTGATTGGTGTGCCTG+AGG | - | chr3.1:84619231-84619250 | MS.gene32653:intron | 50.0% | |
| ! | AAAGGCTGTCATGGTCTTGC+TGG | - | chr3.1:84618009-84618028 | MS.gene32653:intron | 50.0% |
| ! | AAGGCTGTCATGGTCTTGCT+GGG | - | chr3.1:84618010-84618029 | MS.gene32653:intron | 50.0% |
| ! | GGAAAGGCCTTGTCCTACTT+TGG | - | chr3.1:84618042-84618061 | MS.gene32653:intron | 50.0% |
| !! | ATCGACGACTTGGTTGCAAC+AGG | - | chr3.1:84619020-84619039 | MS.gene32653:intron | 50.0% |
| !! | GTTTGGTTCTGCAGTTGCGT+TGG | - | chr3.1:84617454-84617473 | MS.gene32653:intron | 50.0% |
| ACAGGTGGAACTTTGTCGGC+AGG | - | chr3.1:84619038-84619057 | MS.gene32653:intron | 55.0% | |
| ACCAAGGCAGGGTCAGGAAA+AGG | + | chr3.1:84619799-84619818 | None:intergenic | 55.0% | |
| ACGCAAACCTCGCAAGCTAC+CGG | - | chr3.1:84617502-84617521 | MS.gene32653:intron | 55.0% | |
| CTATAGCCCGTTCACCAGGT+TGG | + | chr3.1:84618998-84619017 | None:intergenic | 55.0% | |
| GGATGGCCCATTTGACAACG+GGG | - | chr3.1:84617637-84617656 | MS.gene32653:intron | 55.0% | |
| GGGATGGCCCATTTGACAAC+GGG | - | chr3.1:84617636-84617655 | MS.gene32653:intron | 55.0% | |
| TGCTGGGACTGTGTGTGGAA+AGG | - | chr3.1:84618026-84618045 | MS.gene32653:intron | 55.0% | |
| TTGGATCTCCAGGCACACCA+AGG | + | chr3.1:84619815-84619834 | None:intergenic | 55.0% | |
| ! | TCCTTTTCCTGACCCTGCCT+TGG | - | chr3.1:84619795-84619814 | MS.gene32653:intron | 55.0% |
| !! | GACGACTTGGTTGCAACAGG+TGG | - | chr3.1:84619023-84619042 | MS.gene32653:intron | 55.0% |
| AGTGGAATGCCGCAGCACAG+TGG | + | chr3.1:84618839-84618858 | None:intergenic | 60.0% | |
| ATCTCCAGGCACACCAAGGC+AGG | + | chr3.1:84619811-84619830 | None:intergenic | 60.0% | |
| CGCAAACCTCGCAAGCTACC+GGG | - | chr3.1:84617503-84617522 | MS.gene32653:intron | 60.0% | |
| CGCTGTCCAACCTGGTGAAC+GGG | - | chr3.1:84618989-84619008 | MS.gene32653:intron | 60.0% | |
| GCGCTGTCCAACCTGGTGAA+CGG | - | chr3.1:84618988-84619007 | MS.gene32653:intron | 60.0% | |
| GGCCCATTTGACAACGGGGT+TGG | - | chr3.1:84617641-84617660 | MS.gene32653:intron | 60.0% | |
| GGTCTTGCTGGGACTGTGTG+TGG | - | chr3.1:84618021-84618040 | MS.gene32653:intron | 60.0% | |
| TCTCCAGGCACACCAAGGCA+GGG | + | chr3.1:84619810-84619829 | None:intergenic | 60.0% | |
| ! | GTTGTACCCGGTAGCTTGCG+AGG | + | chr3.1:84617512-84617531 | None:intergenic | 60.0% |
| AGGCACACCAAGGCAGGGTC+AGG | + | chr3.1:84619805-84619824 | None:intergenic | 65.0% | |
| CATGTCGGCGCTGTCCAACC+TGG | - | chr3.1:84618981-84619000 | MS.gene32653:intron | 65.0% | |
| ! | TGACCCTGCCTTGGTGTGCC+TGG | - | chr3.1:84619804-84619823 | MS.gene32653:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 84617167 | 84620035 | 84617167 | ID=MS.gene32653 |
| chr3.1 | mRNA | 84617167 | 84620035 | 84617167 | ID=MS.gene32653.t1;Parent=MS.gene32653 |
| chr3.1 | exon | 84619930 | 84620035 | 84619930 | ID=MS.gene32653.t1.exon1;Parent=MS.gene32653.t1 |
| chr3.1 | CDS | 84619930 | 84620035 | 84619930 | ID=cds.MS.gene32653.t1;Parent=MS.gene32653.t1 |
| chr3.1 | exon | 84619678 | 84619770 | 84619678 | ID=MS.gene32653.t1.exon2;Parent=MS.gene32653.t1 |
| chr3.1 | CDS | 84619678 | 84619770 | 84619678 | ID=cds.MS.gene32653.t1;Parent=MS.gene32653.t1 |
| chr3.1 | exon | 84618128 | 84618277 | 84618128 | ID=MS.gene32653.t1.exon3;Parent=MS.gene32653.t1 |
| chr3.1 | CDS | 84618128 | 84618277 | 84618128 | ID=cds.MS.gene32653.t1;Parent=MS.gene32653.t1 |
| chr3.1 | exon | 84617944 | 84618002 | 84617944 | ID=MS.gene32653.t1.exon4;Parent=MS.gene32653.t1 |
| chr3.1 | CDS | 84617944 | 84618002 | 84617944 | ID=cds.MS.gene32653.t1;Parent=MS.gene32653.t1 |
| chr3.1 | exon | 84617167 | 84617238 | 84617167 | ID=MS.gene32653.t1.exon5;Parent=MS.gene32653.t1 |
| chr3.1 | CDS | 84617167 | 84617238 | 84617167 | ID=cds.MS.gene32653.t1;Parent=MS.gene32653.t1 |
| Gene Sequence |
| Protein sequence |
