Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047020.t1 | XP_003631146.1 | 98.6 | 294 | 4 | 0 | 13 | 306 | 22 | 315 | 5.70E-160 | 573.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047020.t1 | Q9C9X3 | 55.9 | 290 | 127 | 1 | 17 | 305 | 26 | 315 | 1.3e-88 | 327.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047020.t1 | G7LE90 | 98.6 | 294 | 4 | 0 | 13 | 306 | 22 | 315 | 4.1e-160 | 573.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene047020 | MS.gene010215 | PPI |
| MS.gene047020 | MS.gene67887 | PPI |
| MS.gene047020 | MS.gene92405 | PPI |
| MS.gene030809 | MS.gene047020 | PPI |
| MS.gene056195 | MS.gene047020 | PPI |
| MS.gene047020 | MS.gene035891 | PPI |
| MS.gene55897 | MS.gene047020 | PPI |
| MS.gene016642 | MS.gene047020 | PPI |
| MS.gene047020 | MS.gene043964 | PPI |
| MS.gene28077 | MS.gene047020 | PPI |
| MS.gene00058 | MS.gene047020 | PPI |
| MS.gene058336 | MS.gene047020 | PPI |
| MS.gene57291 | MS.gene047020 | PPI |
| MS.gene047020 | MS.gene89484 | PPI |
| MS.gene45772 | MS.gene047020 | PPI |
| MS.gene061777 | MS.gene047020 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047020.t1 | MTR_8g107640 | 98.639 | 294 | 4 | 0 | 13 | 306 | 22 | 315 | 0.0 | 600 |
| MS.gene047020.t1 | MTR_6g071615 | 78.157 | 293 | 64 | 0 | 13 | 305 | 22 | 314 | 1.46e-166 | 465 |
| MS.gene047020.t1 | MTR_6g071595 | 76.451 | 293 | 69 | 0 | 13 | 305 | 22 | 314 | 2.43e-163 | 457 |
| MS.gene047020.t1 | MTR_6g071605 | 73.720 | 293 | 77 | 0 | 13 | 305 | 22 | 314 | 6.87e-163 | 456 |
| MS.gene047020.t1 | MTR_1g112520 | 76.451 | 293 | 69 | 0 | 13 | 305 | 22 | 314 | 1.78e-162 | 455 |
| MS.gene047020.t1 | MTR_6g071595 | 75.109 | 229 | 57 | 0 | 13 | 241 | 22 | 250 | 1.65e-129 | 369 |
| MS.gene047020.t1 | MTR_1g033560 | 57.383 | 298 | 123 | 3 | 8 | 303 | 17 | 312 | 5.23e-125 | 360 |
| MS.gene047020.t1 | MTR_8g038150 | 40.468 | 299 | 171 | 3 | 10 | 303 | 19 | 315 | 4.52e-66 | 210 |
| MS.gene047020.t1 | MTR_8g038180 | 38.776 | 294 | 177 | 3 | 11 | 303 | 20 | 311 | 5.16e-66 | 209 |
| MS.gene047020.t1 | MTR_3g018780 | 37.370 | 289 | 179 | 2 | 17 | 304 | 25 | 312 | 3.27e-65 | 207 |
| MS.gene047020.t1 | MTR_3g018790 | 38.176 | 296 | 181 | 2 | 12 | 306 | 20 | 314 | 3.95e-64 | 204 |
| MS.gene047020.t1 | MTR_8g038220 | 37.500 | 288 | 178 | 2 | 17 | 303 | 24 | 310 | 3.82e-63 | 202 |
| MS.gene047020.t1 | MTR_8g038220 | 37.500 | 288 | 178 | 2 | 17 | 303 | 25 | 311 | 5.79e-63 | 202 |
| MS.gene047020.t1 | MTR_2g031980 | 35.764 | 288 | 183 | 2 | 17 | 303 | 25 | 311 | 1.34e-60 | 196 |
| MS.gene047020.t1 | MTR_8g038210 | 35.254 | 295 | 190 | 1 | 12 | 306 | 20 | 313 | 1.38e-59 | 193 |
| MS.gene047020.t1 | MTR_8g038210 | 35.034 | 294 | 190 | 1 | 13 | 306 | 21 | 313 | 4.82e-59 | 191 |
| MS.gene047020.t1 | MTR_5g063670 | 35.473 | 296 | 187 | 4 | 12 | 305 | 21 | 314 | 5.96e-59 | 191 |
| MS.gene047020.t1 | MTR_0276s0050 | 35.616 | 292 | 184 | 3 | 17 | 306 | 26 | 315 | 4.55e-57 | 186 |
| MS.gene047020.t1 | MTR_3g018790 | 34.568 | 243 | 157 | 2 | 65 | 306 | 19 | 260 | 1.12e-42 | 147 |
| MS.gene047020.t1 | MTR_6g028030 | 31.023 | 303 | 195 | 7 | 8 | 301 | 10 | 307 | 2.17e-36 | 133 |
| MS.gene047020.t1 | MTR_8g038170 | 29.276 | 304 | 190 | 6 | 17 | 303 | 16 | 311 | 2.71e-32 | 122 |
| MS.gene047020.t1 | MTR_8g038170 | 29.276 | 304 | 190 | 6 | 17 | 303 | 16 | 311 | 2.71e-32 | 122 |
| MS.gene047020.t1 | MTR_3g018920 | 34.197 | 193 | 91 | 4 | 12 | 200 | 20 | 180 | 2.50e-25 | 100 |
| MS.gene047020.t1 | MTR_3g018925 | 41.667 | 96 | 56 | 0 | 211 | 306 | 14 | 109 | 2.32e-16 | 73.9 |
| MS.gene047020.t1 | MTR_8g038090 | 49.275 | 69 | 34 | 1 | 236 | 303 | 22 | 90 | 6.35e-13 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047020.t1 | AT1G68090 | 55.862 | 290 | 127 | 1 | 17 | 305 | 26 | 315 | 1.57e-117 | 341 |
| MS.gene047020.t1 | AT1G68090 | 52.444 | 225 | 106 | 1 | 17 | 240 | 26 | 250 | 2.60e-80 | 244 |
| MS.gene047020.t1 | AT1G68090 | 29.371 | 143 | 97 | 2 | 161 | 303 | 16 | 154 | 4.70e-11 | 62.4 |
| MS.gene047020.t1 | AT5G10230 | 39.236 | 288 | 173 | 2 | 17 | 303 | 26 | 312 | 1.00e-70 | 222 |
| MS.gene047020.t1 | AT5G10230 | 32.653 | 147 | 95 | 2 | 157 | 303 | 12 | 154 | 1.80e-14 | 73.2 |
| MS.gene047020.t1 | AT5G10220 | 40.206 | 291 | 168 | 5 | 17 | 303 | 26 | 314 | 2.10e-70 | 221 |
| MS.gene047020.t1 | AT5G65020 | 39.189 | 296 | 175 | 4 | 11 | 303 | 5 | 298 | 4.15e-69 | 217 |
| MS.gene047020.t1 | AT5G65020 | 30.714 | 140 | 94 | 1 | 164 | 303 | 3 | 139 | 2.39e-13 | 69.7 |
| MS.gene047020.t1 | AT5G65020 | 39.655 | 290 | 170 | 4 | 17 | 303 | 26 | 313 | 1.91e-68 | 216 |
| MS.gene047020.t1 | AT1G35720 | 37.500 | 296 | 182 | 3 | 12 | 305 | 21 | 315 | 1.87e-63 | 203 |
| MS.gene047020.t1 | AT5G12380 | 37.241 | 290 | 176 | 3 | 17 | 303 | 25 | 311 | 6.49e-63 | 202 |
| MS.gene047020.t1 | AT2G38760 | 33.445 | 299 | 191 | 3 | 12 | 303 | 21 | 318 | 1.38e-54 | 180 |
| MS.gene047020.t1 | AT2G38750 | 29.582 | 311 | 186 | 9 | 17 | 305 | 2 | 301 | 1.05e-29 | 115 |
| MS.gene047020.t1 | AT2G38750 | 29.582 | 311 | 186 | 9 | 17 | 305 | 19 | 318 | 1.98e-29 | 114 |
Find 83 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCTTATCTTCTGAGCTTTC+TGG | 0.083778 | 4.3:+59192 | MS.gene047020:CDS |
| CATCCCAGCTCCAATATTTA+AGG | 0.208022 | 4.3:+59343 | MS.gene047020:CDS |
| AGACGGTCAGAGTCTGTTTA+AGG | 0.250402 | 4.3:-59275 | None:intergenic |
| TTCTGAGCTTTCTGGCAAAT+TGG | 0.253655 | 4.3:+59200 | MS.gene047020:CDS |
| TGGAGAATGCTATTCTTCTT+TGG | 0.262983 | 4.3:+59220 | MS.gene047020:CDS |
| CTATGGTCATTCATTGAAAA+AGG | 0.272511 | 4.3:+59702 | MS.gene047020:CDS |
| ACCTTTGCGAAATACTTTGC+AGG | 0.321834 | 4.3:-59891 | None:intergenic |
| TGCCTCTGGGGATCATAAAA+AGG | 0.322450 | 4.3:+59419 | MS.gene047020:CDS |
| GGTAAATCTGCCTTAAATAT+TGG | 0.325628 | 4.3:-59353 | None:intergenic |
| TAAAGCAGGTGAGAAGAAAC+TGG | 0.345893 | 4.3:+59594 | MS.gene047020:CDS |
| GAGTGAGGTGTCGGCGGTGG+CGG | 0.370561 | 4.3:+58347 | MS.gene047020:CDS |
| TATTAACCTCGGGGCCTTCA+TGG | 0.371117 | 4.3:-59537 | None:intergenic |
| TTTCAATGAATGACCATAGT+TGG | 0.381777 | 4.3:-59698 | None:intergenic |
| AGGCATTTCTTTCAATATCA+TGG | 0.384021 | 4.3:-59401 | None:intergenic |
| GATAAACGCCGAATCTAGTA+TGG | 0.386843 | 4.3:-59374 | None:intergenic |
| GCCATTTCTCTATTAACCTC+GGG | 0.416575 | 4.3:-59547 | None:intergenic |
| ATGATCGCATCGCGGGTGGC+AGG | 0.418114 | 4.3:-59252 | None:intergenic |
| GCAATAAAGAATGAAACATC+AGG | 0.421465 | 4.3:+59822 | MS.gene047020:CDS |
| CATTTGGACTGCTACTGGTT+GGG | 0.425583 | 4.3:-60585 | None:intergenic |
| ACGTAAGGCAATGAAAGGTC+TGG | 0.431308 | 4.3:+60398 | MS.gene047020:CDS |
| CAGATTTACCATACTAGATT+CGG | 0.431656 | 4.3:+59366 | MS.gene047020:CDS |
| CCGATGACACGAAACTTATG+AGG | 0.444443 | 4.3:+60424 | MS.gene047020:CDS |
| TTTGAGAAGATCTTCAGAAT+AGG | 0.444725 | 4.3:-59169 | None:intergenic |
| TAGCTCTGTATTCTTGTTGG+AGG | 0.449864 | 4.3:-59146 | None:intergenic |
| TCTGCCTTAAATATTGGAGC+TGG | 0.456137 | 4.3:-59347 | None:intergenic |
| CCAACTGTGCGGCACTCCGT+TGG | 0.459909 | 4.3:-59651 | None:intergenic |
| GCAGTTCACTCGGAAACATC+TGG | 0.461957 | 4.3:+60528 | MS.gene047020:CDS |
| CCCCGAGGTTAATAGAGAAA+TGG | 0.469091 | 4.3:+59546 | MS.gene047020:CDS |
| GCGGAGTGAGGTGTCGGCGG+TGG | 0.470621 | 4.3:+58344 | MS.gene047020:CDS |
| CGTAAGGCAATGAAAGGTCT+GGG | 0.471119 | 4.3:+60399 | MS.gene047020:CDS |
| CGGAAACATCTGGCCACTAC+AGG | 0.473093 | 4.3:+60538 | MS.gene047020:CDS |
| GCCAAGGTTCTTTATAAAGC+AGG | 0.481064 | 4.3:+59580 | MS.gene047020:CDS |
| TAGTTTCAAATGGACGGCGG+CGG | 0.494864 | 4.3:+58325 | None:intergenic |
| AGGTAGCTCTGTATTCTTGT+TGG | 0.495794 | 4.3:-59149 | None:intergenic |
| AGCCATTTCTCTATTAACCT+CGG | 0.502469 | 4.3:-59548 | None:intergenic |
| GATATTGAAAGAAATGCCTC+TGG | 0.502650 | 4.3:+59405 | MS.gene047020:CDS |
| CTTAAATATTGGAGCTGGGA+TGG | 0.506218 | 4.3:-59342 | None:intergenic |
| TCTGTATTCTTGTTGGAGGT+AGG | 0.508043 | 4.3:-59142 | None:intergenic |
| CCTCATAAGTTTCGTGTCAT+CGG | 0.515712 | 4.3:-60424 | None:intergenic |
| CCAACGGAGTGCCGCACAGT+TGG | 0.517490 | 4.3:+59651 | MS.gene047020:CDS |
| ACCTCGGGGCCTTCATGGCG+TGG | 0.520754 | 4.3:-59532 | None:intergenic |
| TTTAAGGATGATCGCATCGC+GGG | 0.525060 | 4.3:-59259 | None:intergenic |
| CGGTGGCGGAGAGAAGTTGA+TGG | 0.532711 | 4.3:+58361 | MS.gene047020:CDS |
| ATGTAGATCTATCTCACTCC+TGG | 0.533758 | 4.3:-60457 | None:intergenic |
| GCATTTGGACTGCTACTGGT+TGG | 0.546867 | 4.3:-60586 | None:intergenic |
| GAAATACTTTGCAGGACTCT+CGG | 0.548694 | 4.3:-59883 | None:intergenic |
| CTGCCTTAAATATTGGAGCT+GGG | 0.548696 | 4.3:-59346 | None:intergenic |
| ACCTGCTTTATAAAGAACCT+TGG | 0.551796 | 4.3:-59581 | None:intergenic |
| ACGGCGGCGGAGTGAGGTGT+CGG | 0.554520 | 4.3:+58338 | MS.gene047020:CDS |
| TCATAGAGATGCCACTCAGC+GGG | 0.554538 | 4.3:+59119 | MS.gene047020:CDS |
| ATGAATGACCATAGTTGGCA+TGG | 0.568883 | 4.3:-59693 | None:intergenic |
| AAGTATATTGATCACAGCGC+TGG | 0.572934 | 4.3:-59094 | None:intergenic |
| AAATGGACGGCGGCGGAGTG+AGG | 0.574493 | 4.3:+58332 | None:intergenic |
| TGATCGCATCGCGGGTGGCA+GGG | 0.577286 | 4.3:-59251 | None:intergenic |
| TTGTGCAAATATTCAGCCAA+CGG | 0.579000 | 4.3:+59635 | MS.gene047020:CDS |
| AGAGAAGAAAAGCCCTGTAG+TGG | 0.580742 | 4.3:-60551 | None:intergenic |
| TTGCAGGACTCTCGGCACAT+TGG | 0.581738 | 4.3:-59875 | None:intergenic |
| GTAAGCACGCCACGCCATGA+AGG | 0.585985 | 4.3:+59523 | MS.gene047020:CDS |
| GATTCTTAGTTTCAAATGGA+CGG | 0.594344 | 4.3:+58319 | None:intergenic |
| GTCCTACGTAAGGCAATGAA+AGG | 0.594808 | 4.3:+60393 | MS.gene047020:CDS |
| ATATTGAAAGAAATGCCTCT+GGG | 0.595614 | 4.3:+59406 | MS.gene047020:CDS |
| GCTGAATGATGCAGTTCACT+CGG | 0.599454 | 4.3:+60518 | MS.gene047020:CDS |
| ATGTATGCAGGTCCTACGTA+AGG | 0.602486 | 4.3:+60383 | MS.gene047020:intron |
| GCGGCGGAGTGAGGTGTCGG+CGG | 0.602711 | 4.3:+58341 | MS.gene047020:CDS |
| AAGGATGATCGCATCGCGGG+TGG | 0.610475 | 4.3:-59256 | None:intergenic |
| GGAAACATCTGGCCACTACA+GGG | 0.629881 | 4.3:+60539 | MS.gene047020:CDS |
| GTTTAAGGATGATCGCATCG+CGG | 0.634734 | 4.3:-59260 | None:intergenic |
| TCCTGCAAAGTATTTCGCAA+AGG | 0.635917 | 4.3:+59890 | MS.gene047020:CDS |
| CAATAAAGAATGAAACATCA+GGG | 0.640821 | 4.3:+59823 | MS.gene047020:CDS |
| TTGGAGGTAGGCCCGCTGAG+TGG | 0.643177 | 4.3:-59130 | None:intergenic |
| CCATTTCTCTATTAACCTCG+GGG | 0.647560 | 4.3:-59546 | None:intergenic |
| TCGAGAACATATAACTTCAG+TGG | 0.648591 | 4.3:-59316 | None:intergenic |
| AAAGCAGGTGAGAAGAAACT+GGG | 0.649440 | 4.3:+59595 | MS.gene047020:CDS |
| AATGGCTGAGAACGATGCCA+AGG | 0.650141 | 4.3:+59564 | MS.gene047020:CDS |
| TTATGAGGGTGATTGTAACC+AGG | 0.659039 | 4.3:+60439 | MS.gene047020:CDS |
| CGATGACACGAAACTTATGA+GGG | 0.666861 | 4.3:+60425 | MS.gene047020:CDS |
| CTCATAGAGATGCCACTCAG+CGG | 0.668547 | 4.3:+59118 | MS.gene047020:CDS |
| GACCTTTCATTGCCTTACGT+AGG | 0.695083 | 4.3:-60395 | None:intergenic |
| GCCACGCCATGAAGGCCCCG+AGG | 0.698151 | 4.3:+59531 | MS.gene047020:CDS |
| TATTGAAAGAAATGCCTCTG+GGG | 0.698736 | 4.3:+59407 | MS.gene047020:CDS |
| GTAAGGCAATGAAAGGTCTG+GGG | 0.711244 | 4.3:+60400 | MS.gene047020:CDS |
| TCTTAGTTTCAAATGGACGG+CGG | 0.723605 | 4.3:+58322 | None:intergenic |
| ATTTATGGCAGCCAACTGTG+CGG | 0.736814 | 4.3:-59662 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACTTATTGTTAAAATAATTT+TGG | + | chr4.3:60032-60051 | MS.gene047020:intron | 10.0% |
| !!! | CTTATTGTTAAAATAATTTT+GGG | + | chr4.3:60033-60052 | MS.gene047020:intron | 10.0% |
| !! | AAATAAATACAATAAAGCTT+AGG | - | chr4.3:60174-60193 | None:intergenic | 15.0% |
| !! | TTAAGTGTATAAATTTAAAG+TGG | - | chr4.3:59746-59765 | None:intergenic | 15.0% |
| !! | TATTTAACAACCATACTTTA+CGG | - | chr4.3:58582-58601 | None:intergenic | 20.0% |
| !!! | TTAAAATAATTTTGGGAAGA+AGG | + | chr4.3:60040-60059 | MS.gene047020:intron | 20.0% |
| ! | AAAATAAAACTCCCGAATAT+GGG | + | chr4.3:58657-58676 | MS.gene047020:intron | 25.0% |
| ! | AAGGTAAAAATAATGTAGGA+GGG | - | chr4.3:59924-59943 | None:intergenic | 25.0% |
| ! | ATTAAAGAGAATCAGAAAAC+AGG | - | chr4.3:58462-58481 | None:intergenic | 25.0% |
| ! | ATTTAACAACCATACTTTAC+GGG | - | chr4.3:58581-58600 | None:intergenic | 25.0% |
| ! | CAATAAAGAATGAAACATCA+GGG | + | chr4.3:59823-59842 | MS.gene047020:CDS | 25.0% |
| ! | CAGAATGAATTAGAATTAGA+AGG | - | chr4.3:59045-59064 | None:intergenic | 25.0% |
| ! | CATCAAGGTAAAAATAATGT+AGG | - | chr4.3:59928-59947 | None:intergenic | 25.0% |
| ! | TAAAATAAAACTCCCGAATA+TGG | + | chr4.3:58656-58675 | MS.gene047020:intron | 25.0% |
| ! | TAAATAAGTTGTCACCAAAT+TGG | + | chr4.3:58596-58615 | MS.gene047020:intron | 25.0% |
| ! | TTACATATGCAAGTAAAATC+TGG | - | chr4.3:59507-59526 | None:intergenic | 25.0% |
| !! | CTCTTAAAAATTTTATTGCC+AGG | + | chr4.3:60322-60341 | MS.gene047020:intron | 25.0% |
| !! | TTTTATTGCCAGGATAATTA+AGG | + | chr4.3:60332-60351 | MS.gene047020:intron | 25.0% |
| !!! | CTACATTATTTTTACCTTGA+TGG | + | chr4.3:59926-59945 | MS.gene047020:intron | 25.0% |
| !!! | CTGGCAATAAAATTTTTAAG+AGG | - | chr4.3:60324-60343 | None:intergenic | 25.0% |
| AGGCATTTCTTTCAATATCA+TGG | - | chr4.3:59404-59423 | None:intergenic | 30.0% | |
| AGTGTTAACGCTAAATTATG+TGG | + | chr4.3:60269-60288 | MS.gene047020:intron | 30.0% | |
| ATATTGAAAGAAATGCCTCT+GGG | + | chr4.3:59406-59425 | MS.gene047020:CDS | 30.0% | |
| CAAGGTAAAAATAATGTAGG+AGG | - | chr4.3:59925-59944 | None:intergenic | 30.0% | |
| CAGATTTACCATACTAGATT+CGG | + | chr4.3:59366-59385 | MS.gene047020:CDS | 30.0% | |
| CTATGGTCATTCATTGAAAA+AGG | + | chr4.3:59702-59721 | MS.gene047020:CDS | 30.0% | |
| GAAGAAATGAAAACCAAAGA+AGG | - | chr4.3:58956-58975 | None:intergenic | 30.0% | |
| GCAATAAAGAATGAAACATC+AGG | + | chr4.3:59822-59841 | MS.gene047020:CDS | 30.0% | |
| GGCATGGTAAAAATGATTTA+TGG | - | chr4.3:59680-59699 | None:intergenic | 30.0% | |
| GGTAAATCTGCCTTAAATAT+TGG | - | chr4.3:59356-59375 | None:intergenic | 30.0% | |
| TATATAACATTGCCCAATCA+GGG | - | chr4.3:58526-58545 | None:intergenic | 30.0% | |
| TGAATTAGAATTAGAAGGCA+TGG | - | chr4.3:59040-59059 | None:intergenic | 30.0% | |
| TTATATAACATTGCCCAATC+AGG | - | chr4.3:58527-58546 | None:intergenic | 30.0% | |
| TTTCAATGAATGACCATAGT+TGG | - | chr4.3:59701-59720 | None:intergenic | 30.0% | |
| TTTGAGAAGATCTTCAGAAT+AGG | - | chr4.3:59172-59191 | None:intergenic | 30.0% | |
| ! | AATTGTATTAGTCTCCATCA+AGG | - | chr4.3:59943-59962 | None:intergenic | 30.0% |
| ! | GTCATCTTTTATCAGGATTT+GGG | + | chr4.3:59064-59083 | MS.gene047020:intron | 30.0% |
| ! | TCATTCTGTCATCTTTTATC+AGG | + | chr4.3:59057-59076 | MS.gene047020:intron | 30.0% |
| ! | TGCTATTTGAACAACCAATT+TGG | - | chr4.3:58613-58632 | None:intergenic | 30.0% |
| ! | TGTCATCTTTTATCAGGATT+TGG | + | chr4.3:59063-59082 | MS.gene047020:intron | 30.0% |
| !!! | ATGCATTTTTGAGTTTTCAC+TGG | + | chr4.3:58424-58443 | MS.gene047020:intron | 30.0% |
| !!! | TGGTTGTTTTTAAGGATAGA+GGG | + | chr4.3:60296-60315 | MS.gene047020:intron | 30.0% |
| !!! | TTGGTTGTTTTTAAGGATAG+AGG | + | chr4.3:60295-60314 | MS.gene047020:intron | 30.0% |
| AAAACCAAACAAATCACAGG+TGG | - | chr4.3:58699-58718 | None:intergenic | 35.0% | |
| AAACCAAACAAATCACAGGT+GGG | - | chr4.3:58698-58717 | None:intergenic | 35.0% | |
| ACCTGCTTTATAAAGAACCT+TGG | - | chr4.3:59584-59603 | None:intergenic | 35.0% | |
| ACCTTTCTTTCAGTGAGAAA+AGG | - | chr4.3:60238-60257 | None:intergenic | 35.0% | |
| ACGCTAAATTATGTGGTTGT+TGG | + | chr4.3:60276-60295 | MS.gene047020:intron | 35.0% | |
| AGCCATTTCTCTATTAACCT+CGG | - | chr4.3:59551-59570 | None:intergenic | 35.0% | |
| ATGAATTCAGCTTGGATAAG+TGG | - | chr4.3:59799-59818 | None:intergenic | 35.0% | |
| CGAAAAACCAAACAAATCAC+AGG | - | chr4.3:58702-58721 | None:intergenic | 35.0% | |
| GATATTGAAAGAAATGCCTC+TGG | + | chr4.3:59405-59424 | MS.gene047020:CDS | 35.0% | |
| GCTTATCTCCTTAATTATCC+TGG | - | chr4.3:60343-60362 | None:intergenic | 35.0% | |
| TAAAGAGTGAGAGAAGACTA+TGG | - | chr4.3:59769-59788 | None:intergenic | 35.0% | |
| TATTGAAAGAAATGCCTCTG+GGG | + | chr4.3:59407-59426 | MS.gene047020:CDS | 35.0% | |
| TCGAGAACATATAACTTCAG+TGG | - | chr4.3:59319-59338 | None:intergenic | 35.0% | |
| TGGAGAATGCTATTCTTCTT+TGG | + | chr4.3:59220-59239 | MS.gene047020:CDS | 35.0% | |
| TTATCCAAGCTGAATTCATC+AGG | + | chr4.3:59800-59819 | MS.gene047020:intron | 35.0% | |
| TTCCACTTGTGTAACATAGT+GGG | - | chr4.3:58558-58577 | None:intergenic | 35.0% | |
| TTGTGCAAATATTCAGCCAA+CGG | + | chr4.3:59635-59654 | MS.gene047020:CDS | 35.0% | |
| TTTCTCACTGAAAGAAAGGT+TGG | + | chr4.3:60238-60257 | MS.gene047020:intron | 35.0% | |
| ! | AGTGGTAGCTTCAAGATTTT+TGG | - | chr4.3:59301-59320 | None:intergenic | 35.0% |
| ! | CATTTTTACCATGCCAACTA+TGG | + | chr4.3:59685-59704 | MS.gene047020:CDS | 35.0% |
| ! | TCCTTTTCTCACTGAAAGAA+AGG | + | chr4.3:60234-60253 | MS.gene047020:intron | 35.0% |
| !! | AACTTGGTTGCTTTGAAACT+AGG | + | chr4.3:60066-60085 | MS.gene047020:intron | 35.0% |
| !! | AGCTTCAAGATTTTTGGAGA+CGG | - | chr4.3:59295-59314 | None:intergenic | 35.0% |
| !! | GCTTTTCTTCTCTCACTTTT+AGG | + | chr4.3:60561-60580 | MS.gene047020:CDS | 35.0% |
| !!! | GTGGTTGTTGGTTGTTTTTA+AGG | + | chr4.3:60288-60307 | MS.gene047020:intron | 35.0% |
| AAAAAAAAGGATGTGCCACG+TGG | + | chr4.3:58496-58515 | MS.gene047020:intron | 40.0% | |
| AAAGCAGGTGAGAAGAAACT+GGG | + | chr4.3:59595-59614 | MS.gene047020:CDS | 40.0% | |
| AACCCACTATGTTACACAAG+TGG | + | chr4.3:58553-58572 | MS.gene047020:intron | 40.0% | |
| AAGTATATTGATCACAGCGC+TGG | - | chr4.3:59097-59116 | None:intergenic | 40.0% | |
| AATTCAGCTTGGATAAGTGG+CGG | - | chr4.3:59796-59815 | None:intergenic | 40.0% | |
| ACACAATAGGGTCCCATATT+CGG | - | chr4.3:58672-58691 | None:intergenic | 40.0% | |
| ACCTTTGCGAAATACTTTGC+AGG | - | chr4.3:59894-59913 | None:intergenic | 40.0% | |
| ATGAATGACCATAGTTGGCA+TGG | - | chr4.3:59696-59715 | None:intergenic | 40.0% | |
| ATGTAGATCTATCTCACTCC+TGG | - | chr4.3:60460-60479 | None:intergenic | 40.0% | |
| ATTGCCTGATGAATTCAGCT+TGG | - | chr4.3:59807-59826 | None:intergenic | 40.0% | |
| CAAATGCAGACGGAAATCAA+AGG | - | chr4.3:58843-58862 | None:intergenic | 40.0% | |
| CATCCCAGCTCCAATATTTA+AGG | + | chr4.3:59343-59362 | MS.gene047020:CDS | 40.0% | |
| CCATTTCTCTATTAACCTCG+GGG | - | chr4.3:59549-59568 | None:intergenic | 40.0% | |
| CCTCATAAGTTTCGTGTCAT+CGG | - | chr4.3:60427-60446 | None:intergenic | 40.0% | |
| CGATGACACGAAACTTATGA+GGG | + | chr4.3:60425-60444 | MS.gene047020:CDS | 40.0% | |
| CTGCCTTAAATATTGGAGCT+GGG | - | chr4.3:59349-59368 | None:intergenic | 40.0% | |
| CTTAAATATTGGAGCTGGGA+TGG | - | chr4.3:59345-59364 | None:intergenic | 40.0% | |
| GAAATACTTTGCAGGACTCT+CGG | - | chr4.3:59886-59905 | None:intergenic | 40.0% | |
| GATAAACGCCGAATCTAGTA+TGG | - | chr4.3:59377-59396 | None:intergenic | 40.0% | |
| GCCAAGGTTCTTTATAAAGC+AGG | + | chr4.3:59580-59599 | MS.gene047020:CDS | 40.0% | |
| GCCATTTCTCTATTAACCTC+GGG | - | chr4.3:59550-59569 | None:intergenic | 40.0% | |
| GCTTTCAAAGGTTCCTTCTT+TGG | + | chr4.3:58940-58959 | MS.gene047020:intron | 40.0% | |
| GTTCCACTTGTGTAACATAG+TGG | - | chr4.3:58559-58578 | None:intergenic | 40.0% | |
| TAAAGCAGGTGAGAAGAAAC+TGG | + | chr4.3:59594-59613 | MS.gene047020:CDS | 40.0% | |
| TCTGCCTTAAATATTGGAGC+TGG | - | chr4.3:59350-59369 | None:intergenic | 40.0% | |
| TCTGTATTCTTGTTGGAGGT+AGG | - | chr4.3:59145-59164 | None:intergenic | 40.0% | |
| TTATCTGTACAACAACGTGC+TGG | + | chr4.3:60194-60213 | MS.gene047020:intron | 40.0% | |
| TTATGAGGGTGATTGTAACC+AGG | + | chr4.3:60439-60458 | MS.gene047020:CDS | 40.0% | |
| TTCTTCGATCCAAATGCAGA+CGG | - | chr4.3:58853-58872 | None:intergenic | 40.0% | |
| ! | AGAAGGAACCTTTGAAAGCA+CGG | - | chr4.3:58939-58958 | None:intergenic | 40.0% |
| ! | AGGTAGCTCTGTATTCTTGT+TGG | - | chr4.3:59152-59171 | None:intergenic | 40.0% |
| ! | CATCTCATCGAAGTGTTAGT+TGG | + | chr4.3:58740-58759 | MS.gene047020:intron | 40.0% |
| ! | CTTTGATTTCCGTCTGCATT+TGG | + | chr4.3:58841-58860 | MS.gene047020:intron | 40.0% |
| ! | TACCTTTTTATGATCCCCAG+AGG | - | chr4.3:59424-59443 | None:intergenic | 40.0% |
| ! | TAGCTCTGTATTCTTGTTGG+AGG | - | chr4.3:59149-59168 | None:intergenic | 40.0% |
| ! | TCCTGCAAAGTATTTCGCAA+AGG | + | chr4.3:59890-59909 | MS.gene047020:CDS | 40.0% |
| ! | TTCTGAGCTTTCTGGCAAAT+TGG | + | chr4.3:59200-59219 | MS.gene047020:CDS | 40.0% |
| AAGTTGCATAGCATCGTCTC+TGG | - | chr4.3:58914-58933 | None:intergenic | 45.0% | |
| ACAGGTGGGTGTACACAATA+GGG | - | chr4.3:58684-58703 | None:intergenic | 45.0% | |
| ACGTAAGGCAATGAAAGGTC+TGG | + | chr4.3:60398-60417 | MS.gene047020:CDS | 45.0% | |
| ACGTTTGCCACTATGTATGC+AGG | + | chr4.3:60371-60390 | MS.gene047020:intron | 45.0% | |
| AGACGGTCAGAGTCTGTTTA+AGG | - | chr4.3:59278-59297 | None:intergenic | 45.0% | |
| AGAGAAGAAAAGCCCTGTAG+TGG | - | chr4.3:60554-60573 | None:intergenic | 45.0% | |
| AGTTGCATAGCATCGTCTCT+GGG | - | chr4.3:58913-58932 | None:intergenic | 45.0% | |
| ATGTATGCAGGTCCTACGTA+AGG | + | chr4.3:60383-60402 | MS.gene047020:intron | 45.0% | |
| ATTTATGGCAGCCAACTGTG+CGG | - | chr4.3:59665-59684 | None:intergenic | 45.0% | |
| CAACTTCACCGTGCTTTCAA+AGG | + | chr4.3:58928-58947 | MS.gene047020:intron | 45.0% | |
| CAAGTGGAACCCGTAAAGTA+TGG | + | chr4.3:58569-58588 | MS.gene047020:intron | 45.0% | |
| CACAATAGGGTCCCATATTC+GGG | - | chr4.3:58671-58690 | None:intergenic | 45.0% | |
| CCCCGAGGTTAATAGAGAAA+TGG | + | chr4.3:59546-59565 | MS.gene047020:CDS | 45.0% | |
| CCGATGACACGAAACTTATG+AGG | + | chr4.3:60424-60443 | MS.gene047020:CDS | 45.0% | |
| CGCTTATCTTCTGAGCTTTC+TGG | + | chr4.3:59192-59211 | MS.gene047020:CDS | 45.0% | |
| CGTAAGGCAATGAAAGGTCT+GGG | + | chr4.3:60399-60418 | MS.gene047020:CDS | 45.0% | |
| GACCTTTCATTGCCTTACGT+AGG | - | chr4.3:60398-60417 | None:intergenic | 45.0% | |
| GCTGAATGATGCAGTTCACT+CGG | + | chr4.3:60518-60537 | MS.gene047020:CDS | 45.0% | |
| GTAAGGCAATGAAAGGTCTG+GGG | + | chr4.3:60400-60419 | MS.gene047020:CDS | 45.0% | |
| GTCCTACGTAAGGCAATGAA+AGG | + | chr4.3:60393-60412 | MS.gene047020:CDS | 45.0% | |
| GTTTAAGGATGATCGCATCG+CGG | - | chr4.3:59263-59282 | None:intergenic | 45.0% | |
| TTTAAGGATGATCGCATCGC+GGG | - | chr4.3:59262-59281 | None:intergenic | 45.0% | |
| TTTGGGAAGAAGGAGCAACT+TGG | + | chr4.3:60050-60069 | MS.gene047020:intron | 45.0% | |
| ! | AGGAATAGGGGGTACATTCA+CGG | - | chr4.3:58884-58903 | None:intergenic | 45.0% |
| ! | CGAAGTGTTAGTTGGCGATT+TGG | + | chr4.3:58748-58767 | MS.gene047020:intron | 45.0% |
| ! | TGCCTCTGGGGATCATAAAA+AGG | + | chr4.3:59419-59438 | MS.gene047020:CDS | 45.0% |
| !! | ACACCCACCTGTGATTTGTT+TGG | + | chr4.3:58692-58711 | MS.gene047020:intron | 45.0% |
| !! | TATATTATACTATATATTAT+TGG | - | chr4.3:58778-58797 | None:intergenic | 5.0% |
| !!! | ATATAGTATAATATAATTTT+GGG | + | chr4.3:58783-58802 | MS.gene047020:intron | 5.0% |
| !!! | GAATTTTTTTAAAAAAAAAA+AGG | + | chr4.3:58483-58502 | MS.gene047020:intron | 5.0% |
| !!! | TATATAGTATAATATAATTT+TGG | + | chr4.3:58782-58801 | MS.gene047020:intron | 5.0% |
| AATGGCTGAGAACGATGCCA+AGG | + | chr4.3:59564-59583 | MS.gene047020:CDS | 50.0% | |
| CACAGGTGGGTGTACACAAT+AGG | - | chr4.3:58685-58704 | None:intergenic | 50.0% | |
| CGTAGGACCTGCATACATAG+TGG | - | chr4.3:60381-60400 | None:intergenic | 50.0% | |
| CTCATAGAGATGCCACTCAG+CGG | + | chr4.3:59118-59137 | MS.gene047020:CDS | 50.0% | |
| GCAGTTCACTCGGAAACATC+TGG | + | chr4.3:60528-60547 | MS.gene047020:CDS | 50.0% | |
| GGAAACATCTGGCCACTACA+GGG | + | chr4.3:60539-60558 | MS.gene047020:CDS | 50.0% | |
| GTTGCATAGCATCGTCTCTG+GGG | - | chr4.3:58912-58931 | None:intergenic | 50.0% | |
| TATTAACCTCGGGGCCTTCA+TGG | - | chr4.3:59540-59559 | None:intergenic | 50.0% | |
| TCATAGAGATGCCACTCAGC+GGG | + | chr4.3:59119-59138 | MS.gene047020:CDS | 50.0% | |
| TTGCATAGCATCGTCTCTGG+GGG | - | chr4.3:58911-58930 | None:intergenic | 50.0% | |
| !! | AGAAGTTGATGGTGGGTGGT+GGG | + | chr4.3:58372-58391 | MS.gene047020:intron | 50.0% |
| CGGAAACATCTGGCCACTAC+AGG | + | chr4.3:60538-60557 | MS.gene047020:CDS | 55.0% | |
| GTCGTAGGGGAGAAGAGAAG+AGG | + | chr4.3:58400-58419 | MS.gene047020:intron | 55.0% | |
| TCTGGGGGAAGGAGGAATAG+GGG | - | chr4.3:58896-58915 | None:intergenic | 55.0% | |
| TTGCAGGACTCTCGGCACAT+TGG | - | chr4.3:59878-59897 | None:intergenic | 55.0% | |
| ! | ATAGCATCGTCTCTGGGGGA+AGG | - | chr4.3:58907-58926 | None:intergenic | 55.0% |
| ! | CTCTGGGGGAAGGAGGAATA+GGG | - | chr4.3:58897-58916 | None:intergenic | 55.0% |
| ! | TCTCTGGGGGAAGGAGGAAT+AGG | - | chr4.3:58898-58917 | None:intergenic | 55.0% |
| !! | GAGAAGTTGATGGTGGGTGG+TGG | + | chr4.3:58371-58390 | MS.gene047020:intron | 55.0% |
| !! | GGAGAGAAGTTGATGGTGGG+TGG | + | chr4.3:58368-58387 | MS.gene047020:intron | 55.0% |
| !! | GGCGGAGAGAAGTTGATGGT+GGG | + | chr4.3:58365-58384 | MS.gene047020:intron | 55.0% |
| !! | GGTGGTGGGTTCATGTCGTA+GGG | + | chr4.3:58386-58405 | MS.gene047020:intron | 55.0% |
| !! | GTGGTGGGTTCATGTCGTAG+GGG | + | chr4.3:58387-58406 | MS.gene047020:intron | 55.0% |
| !! | TGGCGGAGAGAAGTTGATGG+TGG | + | chr4.3:58364-58383 | MS.gene047020:intron | 55.0% |
| AAGGATGATCGCATCGCGGG+TGG | - | chr4.3:59259-59278 | None:intergenic | 60.0% | |
| CCACGTGGCACACCCTGATT+GGG | + | chr4.3:58511-58530 | MS.gene047020:intron | 60.0% | |
| CTGGGGGAAGGAGGAATAGG+GGG | - | chr4.3:58895-58914 | None:intergenic | 60.0% | |
| GTAAGCACGCCACGCCATGA+AGG | + | chr4.3:59523-59542 | MS.gene047020:CDS | 60.0% | |
| !! | CGGTGGCGGAGAGAAGTTGA+TGG | + | chr4.3:58361-58380 | MS.gene047020:CDS | 60.0% |
| !! | GGGTGGTGGGTTCATGTCGT+AGG | + | chr4.3:58385-58404 | MS.gene047020:intron | 60.0% |
| ATGATCGCATCGCGGGTGGC+AGG | - | chr4.3:59255-59274 | None:intergenic | 65.0% | |
| CCAACTGTGCGGCACTCCGT+TGG | - | chr4.3:59654-59673 | None:intergenic | 65.0% | |
| CCCAATCAGGGTGTGCCACG+TGG | - | chr4.3:58514-58533 | None:intergenic | 65.0% | |
| GCCACGTGGCACACCCTGAT+TGG | + | chr4.3:58510-58529 | MS.gene047020:intron | 65.0% | |
| TGATCGCATCGCGGGTGGCA+GGG | - | chr4.3:59254-59273 | None:intergenic | 65.0% | |
| TTGGAGGTAGGCCCGCTGAG+TGG | - | chr4.3:59133-59152 | None:intergenic | 65.0% | |
| ! | GCATCGTCTCTGGGGGAAGG+AGG | - | chr4.3:58904-58923 | None:intergenic | 65.0% |
| !! | CCAACGGAGTGCCGCACAGT+TGG | + | chr4.3:59651-59670 | MS.gene047020:CDS | 65.0% |
| ACCTCGGGGCCTTCATGGCG+TGG | - | chr4.3:59535-59554 | None:intergenic | 70.0% | |
| ACGGCGGCGGAGTGAGGTGT+CGG | + | chr4.3:58338-58357 | MS.gene047020:CDS | 70.0% | |
| !! | GAGTGAGGTGTCGGCGGTGG+CGG | + | chr4.3:58347-58366 | MS.gene047020:CDS | 70.0% |
| GCCACGCCATGAAGGCCCCG+AGG | + | chr4.3:59531-59550 | MS.gene047020:CDS | 75.0% | |
| !! | GCGGAGTGAGGTGTCGGCGG+TGG | + | chr4.3:58344-58363 | MS.gene047020:CDS | 75.0% |
| !! | GCGGCGGAGTGAGGTGTCGG+CGG | + | chr4.3:58341-58360 | MS.gene047020:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 58334 | 60596 | 58334 | ID=MS.gene047020 |
| chr4.3 | mRNA | 58334 | 60596 | 58334 | ID=MS.gene047020.t1;Parent=MS.gene047020 |
| chr4.3 | exon | 58334 | 58382 | 58334 | ID=MS.gene047020.t1.exon1;Parent=MS.gene047020.t1 |
| chr4.3 | CDS | 58334 | 58382 | 58334 | ID=cds.MS.gene047020.t1;Parent=MS.gene047020.t1 |
| chr4.3 | exon | 59079 | 59440 | 59079 | ID=MS.gene047020.t1.exon2;Parent=MS.gene047020.t1 |
| chr4.3 | CDS | 59079 | 59440 | 59079 | ID=cds.MS.gene047020.t1;Parent=MS.gene047020.t1 |
| chr4.3 | exon | 59508 | 59723 | 59508 | ID=MS.gene047020.t1.exon3;Parent=MS.gene047020.t1 |
| chr4.3 | CDS | 59508 | 59723 | 59508 | ID=cds.MS.gene047020.t1;Parent=MS.gene047020.t1 |
| chr4.3 | exon | 59822 | 59911 | 59822 | ID=MS.gene047020.t1.exon4;Parent=MS.gene047020.t1 |
| chr4.3 | CDS | 59822 | 59911 | 59822 | ID=cds.MS.gene047020.t1;Parent=MS.gene047020.t1 |
| chr4.3 | exon | 60393 | 60596 | 60393 | ID=MS.gene047020.t1.exon5;Parent=MS.gene047020.t1 |
| chr4.3 | CDS | 60393 | 60596 | 60393 | ID=cds.MS.gene047020.t1;Parent=MS.gene047020.t1 |
| Gene Sequence |
| Protein sequence |
