Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047030.t1 | XP_003631146.1 | 99.4 | 315 | 2 | 0 | 1 | 315 | 1 | 315 | 6.40E-175 | 623.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047030.t1 | Q9C9X3 | 55.9 | 315 | 138 | 1 | 1 | 314 | 1 | 315 | 1.3e-96 | 354.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047030.t1 | G7LE90 | 99.4 | 315 | 2 | 0 | 1 | 315 | 1 | 315 | 4.6e-175 | 623.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene047030 | MS.gene57291 | PPI |
| MS.gene047030 | MS.gene55897 | PPI |
| MS.gene047030 | MS.gene056195 | PPI |
| MS.gene047030 | MS.gene00058 | PPI |
| MS.gene047030 | MS.gene89484 | PPI |
| MS.gene047030 | MS.gene28077 | PPI |
| MS.gene047030 | MS.gene058336 | PPI |
| MS.gene047030 | MS.gene010215 | PPI |
| MS.gene047030 | MS.gene67887 | PPI |
| MS.gene047030 | MS.gene035891 | PPI |
| MS.gene047030 | MS.gene45772 | PPI |
| MS.gene047030 | MS.gene92405 | PPI |
| MS.gene047030 | MS.gene043964 | PPI |
| MS.gene047030 | MS.gene030809 | PPI |
| MS.gene047030 | MS.gene016642 | PPI |
| MS.gene047030 | MS.gene061777 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047030.t1 | MTR_8g107640 | 99.365 | 315 | 2 | 0 | 1 | 315 | 1 | 315 | 0.0 | 654 |
| MS.gene047030.t1 | MTR_6g071615 | 79.299 | 314 | 65 | 0 | 1 | 314 | 1 | 314 | 0.0 | 513 |
| MS.gene047030.t1 | MTR_1g112520 | 77.389 | 314 | 71 | 0 | 1 | 314 | 1 | 314 | 3.25e-180 | 500 |
| MS.gene047030.t1 | MTR_6g071605 | 74.522 | 314 | 80 | 0 | 1 | 314 | 1 | 314 | 1.53e-179 | 498 |
| MS.gene047030.t1 | MTR_6g071595 | 77.389 | 314 | 71 | 0 | 1 | 314 | 1 | 314 | 1.16e-172 | 481 |
| MS.gene047030.t1 | MTR_1g033560 | 59.554 | 314 | 123 | 3 | 1 | 312 | 1 | 312 | 7.48e-140 | 398 |
| MS.gene047030.t1 | MTR_6g071595 | 76.400 | 250 | 59 | 0 | 1 | 250 | 1 | 250 | 8.48e-139 | 393 |
| MS.gene047030.t1 | MTR_8g038150 | 40.694 | 317 | 181 | 3 | 1 | 312 | 1 | 315 | 2.47e-74 | 231 |
| MS.gene047030.t1 | MTR_8g038180 | 38.978 | 313 | 188 | 3 | 1 | 312 | 1 | 311 | 2.17e-72 | 226 |
| MS.gene047030.t1 | MTR_8g038220 | 38.658 | 313 | 189 | 3 | 1 | 312 | 1 | 311 | 1.79e-71 | 224 |
| MS.gene047030.t1 | MTR_3g018780 | 37.898 | 314 | 192 | 3 | 1 | 313 | 1 | 312 | 4.68e-71 | 223 |
| MS.gene047030.t1 | MTR_8g038220 | 38.361 | 305 | 186 | 2 | 9 | 312 | 7 | 310 | 3.32e-70 | 221 |
| MS.gene047030.t1 | MTR_3g018790 | 38.585 | 311 | 189 | 2 | 6 | 315 | 5 | 314 | 6.62e-70 | 220 |
| MS.gene047030.t1 | MTR_5g063670 | 37.224 | 317 | 193 | 6 | 1 | 314 | 1 | 314 | 3.62e-68 | 215 |
| MS.gene047030.t1 | MTR_0276s0050 | 36.278 | 317 | 198 | 3 | 1 | 315 | 1 | 315 | 1.44e-66 | 211 |
| MS.gene047030.t1 | MTR_8g038210 | 35.873 | 315 | 200 | 2 | 1 | 315 | 1 | 313 | 1.20e-65 | 209 |
| MS.gene047030.t1 | MTR_2g031980 | 36.093 | 302 | 191 | 2 | 12 | 312 | 11 | 311 | 1.30e-64 | 206 |
| MS.gene047030.t1 | MTR_8g038210 | 35.556 | 315 | 201 | 2 | 1 | 315 | 1 | 313 | 1.54e-63 | 203 |
| MS.gene047030.t1 | MTR_3g018790 | 34.568 | 243 | 157 | 2 | 74 | 315 | 19 | 260 | 1.05e-42 | 148 |
| MS.gene047030.t1 | MTR_6g028030 | 31.250 | 304 | 195 | 7 | 16 | 310 | 9 | 307 | 3.84e-37 | 135 |
| MS.gene047030.t1 | MTR_8g038170 | 29.545 | 308 | 192 | 6 | 22 | 312 | 12 | 311 | 1.40e-33 | 125 |
| MS.gene047030.t1 | MTR_8g038170 | 29.545 | 308 | 192 | 6 | 22 | 312 | 12 | 311 | 1.40e-33 | 125 |
| MS.gene047030.t1 | MTR_3g018920 | 35.096 | 208 | 99 | 4 | 6 | 209 | 5 | 180 | 1.32e-30 | 114 |
| MS.gene047030.t1 | MTR_3g018925 | 41.667 | 96 | 56 | 0 | 220 | 315 | 14 | 109 | 2.01e-16 | 74.3 |
| MS.gene047030.t1 | MTR_8g038090 | 49.275 | 69 | 34 | 1 | 245 | 312 | 22 | 90 | 8.09e-13 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047030.t1 | AT1G68090 | 55.873 | 315 | 138 | 1 | 1 | 314 | 1 | 315 | 1.09e-129 | 372 |
| MS.gene047030.t1 | AT1G68090 | 52.800 | 250 | 117 | 1 | 1 | 249 | 1 | 250 | 2.70e-92 | 275 |
| MS.gene047030.t1 | AT1G68090 | 28.767 | 146 | 100 | 2 | 170 | 315 | 16 | 157 | 3.28e-11 | 62.8 |
| MS.gene047030.t1 | AT5G10230 | 39.936 | 313 | 186 | 2 | 1 | 312 | 1 | 312 | 7.09e-82 | 251 |
| MS.gene047030.t1 | AT5G10220 | 40.506 | 316 | 182 | 5 | 1 | 312 | 1 | 314 | 3.03e-81 | 249 |
| MS.gene047030.t1 | AT5G65020 | 40.635 | 315 | 182 | 4 | 1 | 312 | 1 | 313 | 1.01e-79 | 245 |
| MS.gene047030.t1 | AT1G35720 | 38.608 | 316 | 191 | 3 | 1 | 314 | 1 | 315 | 3.71e-73 | 228 |
| MS.gene047030.t1 | AT5G65020 | 39.655 | 290 | 170 | 4 | 26 | 312 | 11 | 298 | 7.16e-69 | 217 |
| MS.gene047030.t1 | AT5G65020 | 30.714 | 140 | 94 | 1 | 173 | 312 | 3 | 139 | 4.15e-13 | 68.9 |
| MS.gene047030.t1 | AT5G12380 | 37.143 | 315 | 191 | 4 | 1 | 312 | 1 | 311 | 1.30e-67 | 214 |
| MS.gene047030.t1 | AT2G38760 | 34.483 | 319 | 201 | 3 | 1 | 312 | 1 | 318 | 2.74e-62 | 201 |
| MS.gene047030.t1 | AT2G38750 | 29.582 | 311 | 186 | 9 | 26 | 314 | 19 | 318 | 1.28e-29 | 115 |
| MS.gene047030.t1 | AT2G38750 | 29.582 | 311 | 186 | 9 | 26 | 314 | 2 | 301 | 1.35e-29 | 114 |
Find 80 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCTTATCTTCTGAGCTTTC+TGG | 0.083778 | 4.1:+61497 | MS.gene047030:CDS |
| CATCCCAGCTCCAATATTTA+AGG | 0.208022 | 4.1:+61648 | MS.gene047030:CDS |
| AGACGGTCAGAGTCTGTTTA+AGG | 0.250402 | 4.1:-61580 | None:intergenic |
| TTCTGAGCTTTCTGGCAAAT+TGG | 0.253655 | 4.1:+61505 | MS.gene047030:CDS |
| TGGAGAATGCTATTCTTCTT+TGG | 0.262983 | 4.1:+61525 | MS.gene047030:CDS |
| CTATGGTCATTCATTGAAAA+AGG | 0.272511 | 4.1:+62007 | MS.gene047030:CDS |
| ACCTTTGCGAAATACTTTGC+AGG | 0.321834 | 4.1:-62196 | None:intergenic |
| TGCCTCTGGGGATCATAAAA+AGG | 0.322450 | 4.1:+61724 | MS.gene047030:CDS |
| GGTAAATCTGCCTTAAATAT+TGG | 0.325628 | 4.1:-61658 | None:intergenic |
| TAAAGCAGGTGAGAAGAAAC+TGG | 0.345893 | 4.1:+61899 | MS.gene047030:CDS |
| AAGTTGCATAGCATCGTCTC+TGG | 0.368282 | 4.1:-61198 | None:intergenic |
| TATTAACCTCGGGGCCTTCA+TGG | 0.371117 | 4.1:-61842 | None:intergenic |
| TTTCAATGAATGACCATAGT+TGG | 0.381777 | 4.1:-62003 | None:intergenic |
| AGGCATTTCTTTCAATATCA+TGG | 0.384021 | 4.1:-61706 | None:intergenic |
| GATAAACGCCGAATCTAGTA+TGG | 0.386843 | 4.1:-61679 | None:intergenic |
| GCCATTTCTCTATTAACCTC+GGG | 0.416575 | 4.1:-61852 | None:intergenic |
| ATGATCGCATCGCGGGTGGC+AGG | 0.418114 | 4.1:-61557 | None:intergenic |
| GCAATAAAGAATGAAACATC+AGG | 0.421465 | 4.1:+62127 | MS.gene047030:CDS |
| CATTTGGACTGCTACTGGTT+GGG | 0.425583 | 4.1:-62890 | None:intergenic |
| ACGTAAGGCAATGAAAGGTC+TGG | 0.431308 | 4.1:+62703 | MS.gene047030:CDS |
| CAGATTTACCATACTAGATT+CGG | 0.431656 | 4.1:+61671 | MS.gene047030:CDS |
| CCGATGACACGAAACTTATG+AGG | 0.444443 | 4.1:+62729 | MS.gene047030:CDS |
| TTTGAGAAGATCTTCAGAAT+AGG | 0.444725 | 4.1:-61474 | None:intergenic |
| TAGCTCTGTATTCTTGTTGG+AGG | 0.449864 | 4.1:-61451 | None:intergenic |
| TCTGCCTTAAATATTGGAGC+TGG | 0.456137 | 4.1:-61652 | None:intergenic |
| CCAACTGTGCGGCACTCCGT+TGG | 0.459909 | 4.1:-61956 | None:intergenic |
| GCAGTTCACTCGGAAACATC+TGG | 0.461957 | 4.1:+62833 | MS.gene047030:CDS |
| CCCCGAGGTTAATAGAGAAA+TGG | 0.469091 | 4.1:+61851 | MS.gene047030:CDS |
| CGTAAGGCAATGAAAGGTCT+GGG | 0.471119 | 4.1:+62704 | MS.gene047030:CDS |
| CGGAAACATCTGGCCACTAC+AGG | 0.473093 | 4.1:+62843 | MS.gene047030:CDS |
| GCCAAGGTTCTTTATAAAGC+AGG | 0.481064 | 4.1:+61885 | MS.gene047030:CDS |
| AGGTAGCTCTGTATTCTTGT+TGG | 0.495794 | 4.1:-61454 | None:intergenic |
| AGCCATTTCTCTATTAACCT+CGG | 0.502469 | 4.1:-61853 | None:intergenic |
| GATATTGAAAGAAATGCCTC+TGG | 0.502650 | 4.1:+61710 | MS.gene047030:CDS |
| CTTAAATATTGGAGCTGGGA+TGG | 0.506218 | 4.1:-61647 | None:intergenic |
| TCTGTATTCTTGTTGGAGGT+AGG | 0.508043 | 4.1:-61447 | None:intergenic |
| CAACTTCACCGTGCTTTCAA+AGG | 0.508493 | 4.1:+61215 | MS.gene047030:CDS |
| CCTCATAAGTTTCGTGTCAT+CGG | 0.515712 | 4.1:-62729 | None:intergenic |
| CCAACGGAGTGCCGCACAGT+TGG | 0.517490 | 4.1:+61956 | MS.gene047030:CDS |
| ACCTCGGGGCCTTCATGGCG+TGG | 0.520754 | 4.1:-61837 | None:intergenic |
| TTTAAGGATGATCGCATCGC+GGG | 0.525060 | 4.1:-61564 | None:intergenic |
| ATGTAGATCTATCTCACTCC+TGG | 0.533758 | 4.1:-62762 | None:intergenic |
| GCATTTGGACTGCTACTGGT+TGG | 0.546867 | 4.1:-62891 | None:intergenic |
| GAAATACTTTGCAGGACTCT+CGG | 0.548694 | 4.1:-62188 | None:intergenic |
| CTGCCTTAAATATTGGAGCT+GGG | 0.548696 | 4.1:-61651 | None:intergenic |
| ACCTGCTTTATAAAGAACCT+TGG | 0.551796 | 4.1:-61886 | None:intergenic |
| TCATAGAGATGCCACTCAGC+GGG | 0.554538 | 4.1:+61424 | MS.gene047030:CDS |
| ATGAATGACCATAGTTGGCA+TGG | 0.568883 | 4.1:-61998 | None:intergenic |
| AAGTATATTGATCACAGCGC+TGG | 0.572934 | 4.1:-61399 | None:intergenic |
| TGATCGCATCGCGGGTGGCA+GGG | 0.577286 | 4.1:-61556 | None:intergenic |
| TTGTGCAAATATTCAGCCAA+CGG | 0.579000 | 4.1:+61940 | MS.gene047030:CDS |
| AGAGAAGAAAAGCCCTGTAG+TGG | 0.580742 | 4.1:-62856 | None:intergenic |
| TTGCAGGACTCTCGGCACAT+TGG | 0.581738 | 4.1:-62180 | None:intergenic |
| GTAAGCACGCCACGCCATGA+AGG | 0.585985 | 4.1:+61828 | MS.gene047030:CDS |
| AGTTGCATAGCATCGTCTCT+GGG | 0.589297 | 4.1:-61197 | None:intergenic |
| AGAAGGAACCTTTGAAAGCA+CGG | 0.590481 | 4.1:-61223 | None:intergenic |
| GTCCTACGTAAGGCAATGAA+AGG | 0.594808 | 4.1:+62698 | MS.gene047030:CDS |
| ATATTGAAAGAAATGCCTCT+GGG | 0.595614 | 4.1:+61711 | MS.gene047030:CDS |
| GCTGAATGATGCAGTTCACT+CGG | 0.599454 | 4.1:+62823 | MS.gene047030:CDS |
| ATGTATGCAGGTCCTACGTA+AGG | 0.602486 | 4.1:+62688 | MS.gene047030:intron |
| AAGGATGATCGCATCGCGGG+TGG | 0.610475 | 4.1:-61561 | None:intergenic |
| GGAAACATCTGGCCACTACA+GGG | 0.629881 | 4.1:+62844 | MS.gene047030:CDS |
| GTTTAAGGATGATCGCATCG+CGG | 0.634734 | 4.1:-61565 | None:intergenic |
| TCCTGCAAAGTATTTCGCAA+AGG | 0.635917 | 4.1:+62195 | MS.gene047030:CDS |
| CAATAAAGAATGAAACATCA+GGG | 0.640821 | 4.1:+62128 | MS.gene047030:CDS |
| TTGGAGGTAGGCCCGCTGAG+TGG | 0.643177 | 4.1:-61435 | None:intergenic |
| TTGCATAGCATCGTCTCTGG+GGG | 0.646475 | 4.1:-61195 | None:intergenic |
| CCATTTCTCTATTAACCTCG+GGG | 0.647560 | 4.1:-61851 | None:intergenic |
| TCGAGAACATATAACTTCAG+TGG | 0.648591 | 4.1:-61621 | None:intergenic |
| AAAGCAGGTGAGAAGAAACT+GGG | 0.649440 | 4.1:+61900 | MS.gene047030:CDS |
| AATGGCTGAGAACGATGCCA+AGG | 0.650141 | 4.1:+61869 | MS.gene047030:CDS |
| GTTGCATAGCATCGTCTCTG+GGG | 0.658534 | 4.1:-61196 | None:intergenic |
| TTATGAGGGTGATTGTAACC+AGG | 0.659039 | 4.1:+62744 | MS.gene047030:CDS |
| CGATGACACGAAACTTATGA+GGG | 0.666861 | 4.1:+62730 | MS.gene047030:CDS |
| CTCATAGAGATGCCACTCAG+CGG | 0.668547 | 4.1:+61423 | MS.gene047030:CDS |
| GACCTTTCATTGCCTTACGT+AGG | 0.695083 | 4.1:-62700 | None:intergenic |
| GCCACGCCATGAAGGCCCCG+AGG | 0.698151 | 4.1:+61836 | MS.gene047030:CDS |
| TATTGAAAGAAATGCCTCTG+GGG | 0.698736 | 4.1:+61712 | MS.gene047030:CDS |
| GTAAGGCAATGAAAGGTCTG+GGG | 0.711244 | 4.1:+62705 | MS.gene047030:CDS |
| ATTTATGGCAGCCAACTGTG+CGG | 0.736814 | 4.1:-61967 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACTTATTGTTAAAATAATTT+TGG | + | chr4.1:62337-62356 | MS.gene047030:intron | 10.0% |
| !!! | CTTATTGTTAAAATAATTTT+GGG | + | chr4.1:62338-62357 | MS.gene047030:intron | 10.0% |
| !! | AAAATAAATACAATAAAGCT+TGG | - | chr4.1:62480-62499 | None:intergenic | 15.0% |
| !! | AAATAAATACAATAAAGCTT+GGG | - | chr4.1:62479-62498 | None:intergenic | 15.0% |
| !! | GAATTAGAATTAGAATTAGA+AGG | - | chr4.1:61338-61357 | None:intergenic | 20.0% |
| !!! | TTAAAATAATTTTGGGAAGA+AGG | + | chr4.1:62345-62364 | MS.gene047030:intron | 20.0% |
| !!! | TTAAGGGTATAAATTTAAAG+TGG | - | chr4.1:62051-62070 | None:intergenic | 20.0% |
| ! | AAGGTAAAAATAATGTAGGA+GGG | - | chr4.1:62229-62248 | None:intergenic | 25.0% |
| ! | CAATAAAGAATGAAACATCA+GGG | + | chr4.1:62128-62147 | MS.gene047030:CDS | 25.0% |
| ! | CATCAAGGTAAAAATAATGT+AGG | - | chr4.1:62233-62252 | None:intergenic | 25.0% |
| ! | TTACATATGCAAGTAAAATC+TGG | - | chr4.1:61812-61831 | None:intergenic | 25.0% |
| !! | CTCTTAAAAATTTTATTGCC+AGG | + | chr4.1:62627-62646 | MS.gene047030:intron | 25.0% |
| !! | TTTTATTGCCAGGATAATTA+AGG | + | chr4.1:62637-62656 | MS.gene047030:intron | 25.0% |
| !!! | CTACATTATTTTTACCTTGA+TGG | + | chr4.1:62231-62250 | MS.gene047030:intron | 25.0% |
| !!! | CTGGCAATAAAATTTTTAAG+AGG | - | chr4.1:62629-62648 | None:intergenic | 25.0% |
| AGAATTAGAATTAGAAGGCA+TGG | - | chr4.1:61333-61352 | None:intergenic | 30.0% | |
| AGGCATTTCTTTCAATATCA+TGG | - | chr4.1:61709-61728 | None:intergenic | 30.0% | |
| AGTGTTAACGCTAAATTATG+TGG | + | chr4.1:62574-62593 | MS.gene047030:intron | 30.0% | |
| ATATTGAAAGAAATGCCTCT+GGG | + | chr4.1:61711-61730 | MS.gene047030:CDS | 30.0% | |
| CAAGGTAAAAATAATGTAGG+AGG | - | chr4.1:62230-62249 | None:intergenic | 30.0% | |
| CAGATTTACCATACTAGATT+CGG | + | chr4.1:61671-61690 | MS.gene047030:CDS | 30.0% | |
| CTATGGTCATTCATTGAAAA+AGG | + | chr4.1:62007-62026 | MS.gene047030:CDS | 30.0% | |
| GAAGAAATGAAAACCAAAGA+AGG | - | chr4.1:61243-61262 | None:intergenic | 30.0% | |
| GCAATAAAGAATGAAACATC+AGG | + | chr4.1:62127-62146 | MS.gene047030:CDS | 30.0% | |
| GGCATGGTAAAAATGATTTA+TGG | - | chr4.1:61985-62004 | None:intergenic | 30.0% | |
| GGTAAATCTGCCTTAAATAT+TGG | - | chr4.1:61661-61680 | None:intergenic | 30.0% | |
| TTTCAATGAATGACCATAGT+TGG | - | chr4.1:62006-62025 | None:intergenic | 30.0% | |
| TTTGAGAAGATCTTCAGAAT+AGG | - | chr4.1:61477-61496 | None:intergenic | 30.0% | |
| ! | AATTGTATTAGTCTCCATCA+AGG | - | chr4.1:62248-62267 | None:intergenic | 30.0% |
| ! | GTCATCTTTTATCAGGATTT+GGG | + | chr4.1:61369-61388 | MS.gene047030:intron | 30.0% |
| ! | TCATTCTGTCATCTTTTATC+AGG | + | chr4.1:61362-61381 | MS.gene047030:intron | 30.0% |
| ! | TGTCATCTTTTATCAGGATT+TGG | + | chr4.1:61368-61387 | MS.gene047030:intron | 30.0% |
| !!! | TGGTTGTTTTTAAGGATAGA+GGG | + | chr4.1:62601-62620 | MS.gene047030:intron | 30.0% |
| !!! | TTGGTTGTTTTTAAGGATAG+AGG | + | chr4.1:62600-62619 | MS.gene047030:intron | 30.0% |
| ACCTGCTTTATAAAGAACCT+TGG | - | chr4.1:61889-61908 | None:intergenic | 35.0% | |
| ACCTTTCTTTCAGTGAGAAA+AGG | - | chr4.1:62543-62562 | None:intergenic | 35.0% | |
| ACGCTAAATTATGTGGTTGT+TGG | + | chr4.1:62581-62600 | MS.gene047030:intron | 35.0% | |
| AGCCATTTCTCTATTAACCT+CGG | - | chr4.1:61856-61875 | None:intergenic | 35.0% | |
| ATGAATTCAGCTTGGATAAG+TGG | - | chr4.1:62104-62123 | None:intergenic | 35.0% | |
| GATATTGAAAGAAATGCCTC+TGG | + | chr4.1:61710-61729 | MS.gene047030:CDS | 35.0% | |
| GCTTATCTCCTTAATTATCC+TGG | - | chr4.1:62648-62667 | None:intergenic | 35.0% | |
| TAAAGAGTGAGAGAAGACTA+TGG | - | chr4.1:62074-62093 | None:intergenic | 35.0% | |
| TATTGAAAGAAATGCCTCTG+GGG | + | chr4.1:61712-61731 | MS.gene047030:CDS | 35.0% | |
| TCGAGAACATATAACTTCAG+TGG | - | chr4.1:61624-61643 | None:intergenic | 35.0% | |
| TGAGAGAAGACTATGGTTAA+GGG | - | chr4.1:62067-62086 | None:intergenic | 35.0% | |
| TGGAGAATGCTATTCTTCTT+TGG | + | chr4.1:61525-61544 | MS.gene047030:CDS | 35.0% | |
| TTATCCAAGCTGAATTCATC+AGG | + | chr4.1:62105-62124 | MS.gene047030:intron | 35.0% | |
| TTGTGCAAATATTCAGCCAA+CGG | + | chr4.1:61940-61959 | MS.gene047030:CDS | 35.0% | |
| TTTCTCACTGAAAGAAAGGT+TGG | + | chr4.1:62543-62562 | MS.gene047030:intron | 35.0% | |
| ! | AGTGGTAGCTTCAAGATTTT+TGG | - | chr4.1:61606-61625 | None:intergenic | 35.0% |
| ! | CATTTTTACCATGCCAACTA+TGG | + | chr4.1:61990-62009 | MS.gene047030:CDS | 35.0% |
| ! | TCCTTTTCTCACTGAAAGAA+AGG | + | chr4.1:62539-62558 | MS.gene047030:intron | 35.0% |
| !! | AACTTGGTTGCTTTGAAACT+AGG | + | chr4.1:62371-62390 | MS.gene047030:intron | 35.0% |
| !! | AGCTTCAAGATTTTTGGAGA+CGG | - | chr4.1:61600-61619 | None:intergenic | 35.0% |
| !! | GCTTTTCTTCTCTCACTTTT+AGG | + | chr4.1:62866-62885 | MS.gene047030:CDS | 35.0% |
| !!! | GTGGTTGTTGGTTGTTTTTA+AGG | + | chr4.1:62593-62612 | MS.gene047030:intron | 35.0% |
| AAAGCAGGTGAGAAGAAACT+GGG | + | chr4.1:61900-61919 | MS.gene047030:CDS | 40.0% | |
| AAGTATATTGATCACAGCGC+TGG | - | chr4.1:61402-61421 | None:intergenic | 40.0% | |
| AATTCAGCTTGGATAAGTGG+CGG | - | chr4.1:62101-62120 | None:intergenic | 40.0% | |
| ACCTTTGCGAAATACTTTGC+AGG | - | chr4.1:62199-62218 | None:intergenic | 40.0% | |
| ATGAATGACCATAGTTGGCA+TGG | - | chr4.1:62001-62020 | None:intergenic | 40.0% | |
| ATGTAGATCTATCTCACTCC+TGG | - | chr4.1:62765-62784 | None:intergenic | 40.0% | |
| ATTGCCTGATGAATTCAGCT+TGG | - | chr4.1:62112-62131 | None:intergenic | 40.0% | |
| CATCCCAGCTCCAATATTTA+AGG | + | chr4.1:61648-61667 | MS.gene047030:CDS | 40.0% | |
| CCATTTCTCTATTAACCTCG+GGG | - | chr4.1:61854-61873 | None:intergenic | 40.0% | |
| CCTCATAAGTTTCGTGTCAT+CGG | - | chr4.1:62732-62751 | None:intergenic | 40.0% | |
| CGATGACACGAAACTTATGA+GGG | + | chr4.1:62730-62749 | MS.gene047030:CDS | 40.0% | |
| CTGCCTTAAATATTGGAGCT+GGG | - | chr4.1:61654-61673 | None:intergenic | 40.0% | |
| CTTAAATATTGGAGCTGGGA+TGG | - | chr4.1:61650-61669 | None:intergenic | 40.0% | |
| GAAATACTTTGCAGGACTCT+CGG | - | chr4.1:62191-62210 | None:intergenic | 40.0% | |
| GATAAACGCCGAATCTAGTA+TGG | - | chr4.1:61682-61701 | None:intergenic | 40.0% | |
| GCCAAGGTTCTTTATAAAGC+AGG | + | chr4.1:61885-61904 | MS.gene047030:CDS | 40.0% | |
| GCCATTTCTCTATTAACCTC+GGG | - | chr4.1:61855-61874 | None:intergenic | 40.0% | |
| GCTTTCAAAGGTTCCTTCTT+TGG | + | chr4.1:61227-61246 | MS.gene047030:intron | 40.0% | |
| GTGAGAGAAGACTATGGTTA+AGG | - | chr4.1:62068-62087 | None:intergenic | 40.0% | |
| TAAAGCAGGTGAGAAGAAAC+TGG | + | chr4.1:61899-61918 | MS.gene047030:CDS | 40.0% | |
| TCTGCCTTAAATATTGGAGC+TGG | - | chr4.1:61655-61674 | None:intergenic | 40.0% | |
| TCTGTATTCTTGTTGGAGGT+AGG | - | chr4.1:61450-61469 | None:intergenic | 40.0% | |
| TTATCTGTACAACAACGTGC+TGG | + | chr4.1:62499-62518 | MS.gene047030:intron | 40.0% | |
| TTATGAGGGTGATTGTAACC+AGG | + | chr4.1:62744-62763 | MS.gene047030:CDS | 40.0% | |
| ! | AGAAGGAACCTTTGAAAGCA+CGG | - | chr4.1:61226-61245 | None:intergenic | 40.0% |
| ! | AGGTAGCTCTGTATTCTTGT+TGG | - | chr4.1:61457-61476 | None:intergenic | 40.0% |
| ! | TACCTTTTTATGATCCCCAG+AGG | - | chr4.1:61729-61748 | None:intergenic | 40.0% |
| ! | TAGCTCTGTATTCTTGTTGG+AGG | - | chr4.1:61454-61473 | None:intergenic | 40.0% |
| ! | TCCTGCAAAGTATTTCGCAA+AGG | + | chr4.1:62195-62214 | MS.gene047030:CDS | 40.0% |
| ! | TTCTGAGCTTTCTGGCAAAT+TGG | + | chr4.1:61505-61524 | MS.gene047030:CDS | 40.0% |
| AAGTTGCATAGCATCGTCTC+TGG | - | chr4.1:61201-61220 | None:intergenic | 45.0% | |
| ACGTAAGGCAATGAAAGGTC+TGG | + | chr4.1:62703-62722 | MS.gene047030:CDS | 45.0% | |
| ACGTTTGCCACTATGTATGC+AGG | + | chr4.1:62676-62695 | MS.gene047030:intron | 45.0% | |
| AGACGGTCAGAGTCTGTTTA+AGG | - | chr4.1:61583-61602 | None:intergenic | 45.0% | |
| AGAGAAGAAAAGCCCTGTAG+TGG | - | chr4.1:62859-62878 | None:intergenic | 45.0% | |
| AGTTGCATAGCATCGTCTCT+GGG | - | chr4.1:61200-61219 | None:intergenic | 45.0% | |
| ATGTATGCAGGTCCTACGTA+AGG | + | chr4.1:62688-62707 | MS.gene047030:intron | 45.0% | |
| ATTTATGGCAGCCAACTGTG+CGG | - | chr4.1:61970-61989 | None:intergenic | 45.0% | |
| CAACTTCACCGTGCTTTCAA+AGG | + | chr4.1:61215-61234 | MS.gene047030:CDS | 45.0% | |
| CCCCGAGGTTAATAGAGAAA+TGG | + | chr4.1:61851-61870 | MS.gene047030:CDS | 45.0% | |
| CCGATGACACGAAACTTATG+AGG | + | chr4.1:62729-62748 | MS.gene047030:CDS | 45.0% | |
| CGCTTATCTTCTGAGCTTTC+TGG | + | chr4.1:61497-61516 | MS.gene047030:CDS | 45.0% | |
| CGTAAGGCAATGAAAGGTCT+GGG | + | chr4.1:62704-62723 | MS.gene047030:CDS | 45.0% | |
| GACCTTTCATTGCCTTACGT+AGG | - | chr4.1:62703-62722 | None:intergenic | 45.0% | |
| GCTGAATGATGCAGTTCACT+CGG | + | chr4.1:62823-62842 | MS.gene047030:CDS | 45.0% | |
| GTAAGGCAATGAAAGGTCTG+GGG | + | chr4.1:62705-62724 | MS.gene047030:CDS | 45.0% | |
| GTCCTACGTAAGGCAATGAA+AGG | + | chr4.1:62698-62717 | MS.gene047030:CDS | 45.0% | |
| GTTTAAGGATGATCGCATCG+CGG | - | chr4.1:61568-61587 | None:intergenic | 45.0% | |
| TTTAAGGATGATCGCATCGC+GGG | - | chr4.1:61567-61586 | None:intergenic | 45.0% | |
| TTTGGGAAGAAGGAGCAACT+TGG | + | chr4.1:62355-62374 | MS.gene047030:intron | 45.0% | |
| ! | AGGAATAGGGGGTACATTCA+CGG | - | chr4.1:61171-61190 | None:intergenic | 45.0% |
| ! | TGCCTCTGGGGATCATAAAA+AGG | + | chr4.1:61724-61743 | MS.gene047030:CDS | 45.0% |
| AATGGCTGAGAACGATGCCA+AGG | + | chr4.1:61869-61888 | MS.gene047030:CDS | 50.0% | |
| CGTAGGACCTGCATACATAG+TGG | - | chr4.1:62686-62705 | None:intergenic | 50.0% | |
| CTCATAGAGATGCCACTCAG+CGG | + | chr4.1:61423-61442 | MS.gene047030:CDS | 50.0% | |
| GCAGTTCACTCGGAAACATC+TGG | + | chr4.1:62833-62852 | MS.gene047030:CDS | 50.0% | |
| GGAAACATCTGGCCACTACA+GGG | + | chr4.1:62844-62863 | MS.gene047030:CDS | 50.0% | |
| GTTGCATAGCATCGTCTCTG+GGG | - | chr4.1:61199-61218 | None:intergenic | 50.0% | |
| TATTAACCTCGGGGCCTTCA+TGG | - | chr4.1:61845-61864 | None:intergenic | 50.0% | |
| TCATAGAGATGCCACTCAGC+GGG | + | chr4.1:61424-61443 | MS.gene047030:CDS | 50.0% | |
| TTGCATAGCATCGTCTCTGG+GGG | - | chr4.1:61198-61217 | None:intergenic | 50.0% | |
| CGGAAACATCTGGCCACTAC+AGG | + | chr4.1:62843-62862 | MS.gene047030:CDS | 55.0% | |
| TCTGGGGGAAGGAGGAATAG+GGG | - | chr4.1:61183-61202 | None:intergenic | 55.0% | |
| TTGCAGGACTCTCGGCACAT+TGG | - | chr4.1:62183-62202 | None:intergenic | 55.0% | |
| ! | ATAGCATCGTCTCTGGGGGA+AGG | - | chr4.1:61194-61213 | None:intergenic | 55.0% |
| ! | CTCTGGGGGAAGGAGGAATA+GGG | - | chr4.1:61184-61203 | None:intergenic | 55.0% |
| ! | TCTCTGGGGGAAGGAGGAAT+AGG | - | chr4.1:61185-61204 | None:intergenic | 55.0% |
| AAGGATGATCGCATCGCGGG+TGG | - | chr4.1:61564-61583 | None:intergenic | 60.0% | |
| CTGGGGGAAGGAGGAATAGG+GGG | - | chr4.1:61182-61201 | None:intergenic | 60.0% | |
| GTAAGCACGCCACGCCATGA+AGG | + | chr4.1:61828-61847 | MS.gene047030:CDS | 60.0% | |
| ATGATCGCATCGCGGGTGGC+AGG | - | chr4.1:61560-61579 | None:intergenic | 65.0% | |
| CCAACTGTGCGGCACTCCGT+TGG | - | chr4.1:61959-61978 | None:intergenic | 65.0% | |
| TGATCGCATCGCGGGTGGCA+GGG | - | chr4.1:61559-61578 | None:intergenic | 65.0% | |
| TTGGAGGTAGGCCCGCTGAG+TGG | - | chr4.1:61438-61457 | None:intergenic | 65.0% | |
| ! | GCATCGTCTCTGGGGGAAGG+AGG | - | chr4.1:61191-61210 | None:intergenic | 65.0% |
| !! | CCAACGGAGTGCCGCACAGT+TGG | + | chr4.1:61956-61975 | MS.gene047030:CDS | 65.0% |
| ACCTCGGGGCCTTCATGGCG+TGG | - | chr4.1:61840-61859 | None:intergenic | 70.0% | |
| GCCACGCCATGAAGGCCCCG+AGG | + | chr4.1:61836-61855 | MS.gene047030:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 61161 | 62901 | 61161 | ID=MS.gene047030 |
| chr4.1 | mRNA | 61161 | 62901 | 61161 | ID=MS.gene047030.t1;Parent=MS.gene047030 |
| chr4.1 | exon | 61161 | 61236 | 61161 | ID=MS.gene047030.t1.exon1;Parent=MS.gene047030.t1 |
| chr4.1 | CDS | 61161 | 61236 | 61161 | ID=cds.MS.gene047030.t1;Parent=MS.gene047030.t1 |
| chr4.1 | exon | 61384 | 61745 | 61384 | ID=MS.gene047030.t1.exon2;Parent=MS.gene047030.t1 |
| chr4.1 | CDS | 61384 | 61745 | 61384 | ID=cds.MS.gene047030.t1;Parent=MS.gene047030.t1 |
| chr4.1 | exon | 61813 | 62028 | 61813 | ID=MS.gene047030.t1.exon3;Parent=MS.gene047030.t1 |
| chr4.1 | CDS | 61813 | 62028 | 61813 | ID=cds.MS.gene047030.t1;Parent=MS.gene047030.t1 |
| chr4.1 | exon | 62127 | 62216 | 62127 | ID=MS.gene047030.t1.exon4;Parent=MS.gene047030.t1 |
| chr4.1 | CDS | 62127 | 62216 | 62127 | ID=cds.MS.gene047030.t1;Parent=MS.gene047030.t1 |
| chr4.1 | exon | 62698 | 62901 | 62698 | ID=MS.gene047030.t1.exon5;Parent=MS.gene047030.t1 |
| chr4.1 | CDS | 62698 | 62901 | 62698 | ID=cds.MS.gene047030.t1;Parent=MS.gene047030.t1 |
| Gene Sequence |
| Protein sequence |
