Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48401.t1 | XP_003608902.2 | 98 | 357 | 7 | 0 | 1 | 357 | 24 | 380 | 1.90E-207 | 731.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48401.t1 | Q9STM6 | 63.7 | 358 | 120 | 3 | 2 | 353 | 24 | 377 | 6.5e-132 | 471.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48401.t1 | G7JMN9 | 98.0 | 357 | 7 | 0 | 1 | 357 | 24 | 380 | 1.4e-207 | 731.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049260 | MS.gene48401 | 0.806517 | 7.92E-50 | -1.69E-46 |
| MS.gene049267 | MS.gene48401 | -0.810508 | 1.11E-50 | -1.69E-46 |
| MS.gene049356 | MS.gene48401 | 0.826258 | 2.99E-54 | -1.69E-46 |
| MS.gene049369 | MS.gene48401 | 0.815963 | 7.06E-52 | -1.69E-46 |
| MS.gene049491 | MS.gene48401 | 0.820004 | 8.62E-53 | -1.69E-46 |
| MS.gene049758 | MS.gene48401 | 0.80977 | 1.61E-50 | -1.69E-46 |
| MS.gene049907 | MS.gene48401 | 0.828233 | 1.01E-54 | -1.69E-46 |
| MS.gene050099 | MS.gene48401 | 0.819418 | 1.17E-52 | -1.69E-46 |
| MS.gene050128 | MS.gene48401 | 0.859756 | 3.32E-63 | -1.69E-46 |
| MS.gene050301 | MS.gene48401 | 0.835929 | 1.26E-56 | -1.69E-46 |
| MS.gene050397 | MS.gene48401 | 0.800751 | 1.24E-48 | -1.69E-46 |
| MS.gene050432 | MS.gene48401 | 0.819583 | 1.08E-52 | -1.69E-46 |
| MS.gene050520 | MS.gene48401 | 0.818526 | 1.87E-52 | -1.69E-46 |
| MS.gene050581 | MS.gene48401 | 0.818035 | 2.42E-52 | -1.69E-46 |
| MS.gene050767 | MS.gene48401 | 0.824187 | 9.25E-54 | -1.69E-46 |
| MS.gene050770 | MS.gene48401 | 0.824394 | 8.26E-54 | -1.69E-46 |
| MS.gene05101 | MS.gene48401 | 0.830165 | 3.42E-55 | -1.69E-46 |
| MS.gene05105 | MS.gene48401 | 0.812869 | 3.41E-51 | -1.69E-46 |
| MS.gene051255 | MS.gene48401 | 0.869792 | 2.37E-66 | -1.69E-46 |
| MS.gene051360 | MS.gene48401 | 0.819986 | 8.70E-53 | -1.69E-46 |
| MS.gene051692 | MS.gene48401 | 0.800436 | 1.44E-48 | -1.69E-46 |
| MS.gene052078 | MS.gene48401 | 0.837456 | 5.14E-57 | -1.69E-46 |
| MS.gene052178 | MS.gene48401 | 0.84917 | 3.84E-60 | -1.69E-46 |
| MS.gene052188 | MS.gene48401 | 0.837636 | 4.62E-57 | -1.69E-46 |
| MS.gene052271 | MS.gene48401 | 0.819068 | 1.41E-52 | -1.69E-46 |
| MS.gene052287 | MS.gene48401 | 0.843189 | 1.63E-58 | -1.69E-46 |
| MS.gene052310 | MS.gene48401 | 0.831344 | 1.76E-55 | -1.69E-46 |
| MS.gene052326 | MS.gene48401 | 0.803832 | 2.89E-49 | -1.69E-46 |
| MS.gene052340 | MS.gene48401 | 0.855006 | 8.43E-62 | -1.69E-46 |
| MS.gene052485 | MS.gene48401 | 0.825707 | 4.05E-54 | -1.69E-46 |
| MS.gene052999 | MS.gene48401 | 0.801913 | 7.19E-49 | -1.69E-46 |
| MS.gene05316 | MS.gene48401 | 0.807294 | 5.42E-50 | -1.69E-46 |
| MS.gene053209 | MS.gene48401 | 0.869535 | 2.88E-66 | -1.69E-46 |
| MS.gene053449 | MS.gene48401 | 0.801705 | 7.94E-49 | -1.69E-46 |
| MS.gene053557 | MS.gene48401 | 0.838809 | 2.31E-57 | -1.69E-46 |
| MS.gene053813 | MS.gene48401 | 0.85652 | 3.04E-62 | -1.69E-46 |
| MS.gene053928 | MS.gene48401 | 0.808721 | 2.69E-50 | -1.69E-46 |
| MS.gene054010 | MS.gene48401 | 0.838277 | 3.16E-57 | -1.69E-46 |
| MS.gene054011 | MS.gene48401 | 0.820812 | 5.63E-53 | -1.69E-46 |
| MS.gene054012 | MS.gene48401 | 0.829386 | 5.30E-55 | -1.69E-46 |
| MS.gene054013 | MS.gene48401 | 0.835467 | 1.65E-56 | -1.69E-46 |
| MS.gene054376 | MS.gene48401 | 0.828944 | 6.78E-55 | -1.69E-46 |
| MS.gene055116 | MS.gene48401 | 0.819167 | 1.34E-52 | -1.69E-46 |
| MS.gene055254 | MS.gene48401 | 0.809796 | 1.59E-50 | -1.69E-46 |
| MS.gene055277 | MS.gene48401 | 0.853446 | 2.38E-61 | -1.69E-46 |
| MS.gene055390 | MS.gene48401 | 0.805082 | 1.59E-49 | -1.69E-46 |
| MS.gene055407 | MS.gene48401 | 0.808965 | 2.39E-50 | -1.69E-46 |
| MS.gene055422 | MS.gene48401 | 0.814306 | 1.65E-51 | -1.69E-46 |
| MS.gene055428 | MS.gene48401 | 0.818088 | 2.35E-52 | -1.69E-46 |
| MS.gene055604 | MS.gene48401 | 0.832826 | 7.57E-56 | -1.69E-46 |
| MS.gene055666 | MS.gene48401 | 0.812435 | 4.25E-51 | -1.69E-46 |
| MS.gene056191 | MS.gene48401 | 0.868584 | 5.86E-66 | -1.69E-46 |
| MS.gene056410 | MS.gene48401 | 0.861982 | 6.99E-64 | -1.69E-46 |
| MS.gene056609 | MS.gene48401 | 0.837197 | 5.99E-57 | -1.69E-46 |
| MS.gene056611 | MS.gene48401 | 0.832625 | 8.50E-56 | -1.69E-46 |
| MS.gene056902 | MS.gene48401 | 0.813977 | 1.95E-51 | -1.69E-46 |
| MS.gene056931 | MS.gene48401 | 0.837465 | 5.12E-57 | -1.69E-46 |
| MS.gene056933 | MS.gene48401 | 0.83719 | 6.02E-57 | -1.69E-46 |
| MS.gene056935 | MS.gene48401 | 0.821925 | 3.12E-53 | -1.69E-46 |
| MS.gene05733 | MS.gene48401 | 0.824612 | 7.34E-54 | -1.69E-46 |
| MS.gene057448 | MS.gene48401 | 0.823594 | 1.27E-53 | -1.69E-46 |
| MS.gene057449 | MS.gene48401 | 0.824413 | 8.18E-54 | -1.69E-46 |
| MS.gene057450 | MS.gene48401 | 0.829973 | 3.81E-55 | -1.69E-46 |
| MS.gene057537 | MS.gene48401 | 0.823031 | 1.72E-53 | -1.69E-46 |
| MS.gene057749 | MS.gene48401 | 0.82149 | 3.93E-53 | -1.69E-46 |
| MS.gene057796 | MS.gene48401 | 0.835615 | 1.51E-56 | -1.69E-46 |
| MS.gene057823 | MS.gene48401 | 0.816097 | 6.59E-52 | -1.69E-46 |
| MS.gene058002 | MS.gene48401 | 0.824083 | 9.78E-54 | -1.69E-46 |
| MS.gene05806 | MS.gene48401 | 0.809926 | 1.49E-50 | -1.69E-46 |
| MS.gene058082 | MS.gene48401 | 0.800585 | 1.35E-48 | -1.69E-46 |
| MS.gene05811 | MS.gene48401 | 0.845423 | 4.10E-59 | -1.69E-46 |
| MS.gene058293 | MS.gene48401 | 0.807222 | 5.62E-50 | -1.69E-46 |
| MS.gene058459 | MS.gene48401 | 0.835375 | 1.74E-56 | -1.69E-46 |
| MS.gene058660 | MS.gene48401 | 0.814904 | 1.21E-51 | -1.69E-46 |
| MS.gene058903 | MS.gene48401 | 0.859967 | 2.87E-63 | -1.69E-46 |
| MS.gene058928 | MS.gene48401 | 0.839297 | 1.72E-57 | -1.69E-46 |
| MS.gene058993 | MS.gene48401 | 0.800551 | 1.37E-48 | -1.69E-46 |
| MS.gene05907 | MS.gene48401 | 0.831242 | 1.87E-55 | -1.69E-46 |
| MS.gene059129 | MS.gene48401 | 0.822598 | 2.17E-53 | -1.69E-46 |
| MS.gene059294 | MS.gene48401 | 0.85819 | 9.77E-63 | -1.69E-46 |
| MS.gene059366 | MS.gene48401 | 0.814074 | 1.85E-51 | -1.69E-46 |
| MS.gene059518 | MS.gene48401 | 0.825209 | 5.31E-54 | -1.69E-46 |
| MS.gene059597 | MS.gene48401 | 0.818204 | 2.21E-52 | -1.69E-46 |
| MS.gene059674 | MS.gene48401 | 0.813428 | 2.57E-51 | -1.69E-46 |
| MS.gene059676 | MS.gene48401 | 0.843105 | 1.72E-58 | -1.69E-46 |
| MS.gene059688 | MS.gene48401 | 0.833763 | 4.42E-56 | -1.69E-46 |
| MS.gene059692 | MS.gene48401 | 0.854036 | 1.61E-61 | -1.69E-46 |
| MS.gene059695 | MS.gene48401 | 0.851385 | 9.18E-61 | -1.69E-46 |
| MS.gene059711 | MS.gene48401 | 0.857954 | 1.15E-62 | -1.69E-46 |
| MS.gene059807 | MS.gene48401 | 0.806353 | 8.57E-50 | -1.69E-46 |
| MS.gene05984 | MS.gene48401 | 0.817619 | 3.00E-52 | -1.69E-46 |
| MS.gene05986 | MS.gene48401 | 0.815383 | 9.51E-52 | -1.69E-46 |
| MS.gene059894 | MS.gene48401 | 0.835099 | 2.04E-56 | -1.69E-46 |
| MS.gene059974 | MS.gene48401 | 0.974609 | 1.86E-138 | -1.69E-46 |
| MS.gene060005 | MS.gene48401 | 0.912235 | 2.46E-83 | -1.69E-46 |
| MS.gene06037 | MS.gene48401 | 0.854594 | 1.11E-61 | -1.69E-46 |
| MS.gene060559 | MS.gene48401 | 0.819946 | 8.89E-53 | -1.69E-46 |
| MS.gene060799 | MS.gene48401 | 0.84423 | 8.60E-59 | -1.69E-46 |
| MS.gene060800 | MS.gene48401 | 0.867675 | 1.15E-65 | -1.69E-46 |
| MS.gene060801 | MS.gene48401 | 0.847163 | 1.38E-59 | -1.69E-46 |
| MS.gene060818 | MS.gene48401 | 0.809821 | 1.57E-50 | -1.69E-46 |
| MS.gene060837 | MS.gene48401 | 0.834294 | 3.26E-56 | -1.69E-46 |
| MS.gene061049 | MS.gene48401 | 0.833421 | 5.39E-56 | -1.69E-46 |
| MS.gene061051 | MS.gene48401 | -0.817741 | 2.82E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 66 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCCTTCTCAGTATATTAAT+TGG | 0.148489 | 8.3:-18246206 | MS.gene48401:CDS |
| TTTCCTGAATTCTTGTAATT+TGG | 0.171860 | 8.3:+18246410 | None:intergenic |
| GGTGTTAACTTTGCTGTTGC+TGG | 0.263157 | 8.3:-18247050 | MS.gene48401:CDS |
| CAGTGTCTCAGGAGCTTTAC+AGG | 0.269526 | 8.3:-18246778 | MS.gene48401:intron |
| GCTGAAGGTCCAAGTGGTTT+TGG | 0.306391 | 8.3:-18247227 | MS.gene48401:CDS |
| AATGATTATGCTTACACTCT+TGG | 0.315837 | 8.3:-18246843 | MS.gene48401:CDS |
| TAAACCATGAATTCTTTGTT+AGG | 0.329985 | 8.3:-18247016 | MS.gene48401:CDS |
| AAAAGATCAAATGATACTTT+TGG | 0.334241 | 8.3:-18247071 | MS.gene48401:CDS |
| TCTTACCGAAGCTATGTATA+AGG | 0.339713 | 8.3:-18246172 | MS.gene48401:CDS |
| TATTCCTAACAAAGAATTCA+TGG | 0.348303 | 8.3:+18247012 | None:intergenic |
| CAGTCTCAGAAGATACTATA+AGG | 0.400671 | 8.3:-18246815 | MS.gene48401:CDS |
| CCCTTCTCAGTATATTAATT+GGG | 0.408026 | 8.3:-18246205 | MS.gene48401:CDS |
| GTGCAAGGTCATCCACCAAC+AGG | 0.409203 | 8.3:-18246540 | MS.gene48401:CDS |
| TTCAAGAAAATTTACGCCTT+CGG | 0.409856 | 8.3:-18247284 | MS.gene48401:CDS |
| ATGAAGAATCCAAGCAAGTA+TGG | 0.412451 | 8.3:-18246330 | MS.gene48401:CDS |
| TAAGGTTGTGATTGTTGCTT+AGG | 0.412894 | 8.3:+18246442 | None:intergenic |
| GTTTCTAATATGTTTCTTCA+AGG | 0.421614 | 8.3:-18246147 | MS.gene48401:CDS |
| CTTGCAATGTCCAGTGTCTC+AGG | 0.422400 | 8.3:-18246789 | MS.gene48401:CDS |
| CCTAAGTCGTCTCTGTCATC+TGG | 0.426751 | 8.3:+18246486 | None:intergenic |
| AAGCCAAATTACAAGAATTC+AGG | 0.428938 | 8.3:-18246413 | MS.gene48401:CDS |
| GTAATTTGGCTTGCAGCATA+AGG | 0.433254 | 8.3:+18246424 | None:intergenic |
| TTCAGTGTCTGCTGTGGATC+AGG | 0.434569 | 8.3:-18246294 | MS.gene48401:CDS |
| TCTTTGAATCCATACTTGCT+TGG | 0.457241 | 8.3:+18246321 | None:intergenic |
| TCCATCAGAATATCTGTTTG+TGG | 0.461336 | 8.3:+18247160 | None:intergenic |
| GCAAACACAGTAAAGTTGTA+AGG | 0.470362 | 8.3:+18246264 | None:intergenic |
| CTAAATACATTGTCAGTGTA+AGG | 0.474491 | 8.3:+18246514 | None:intergenic |
| CTGTAAAGCTCCTGAGACAC+TGG | 0.475224 | 8.3:+18246779 | None:intergenic |
| CTAGTGCAGACAGTAGCATT+AGG | 0.483410 | 8.3:+18246228 | None:intergenic |
| TTTACTGTGTTTGCTACTTG+TGG | 0.486375 | 8.3:-18246255 | MS.gene48401:CDS |
| CCCAATTAATATACTGAGAA+GGG | 0.489096 | 8.3:+18246205 | None:intergenic |
| ATTGTGGTTTAATAAGTACT+TGG | 0.491945 | 8.3:-18246946 | MS.gene48401:CDS |
| AACAACCTTATACATAGCTT+CGG | 0.507341 | 8.3:+18246167 | None:intergenic |
| ACCTTGCACAACTAGGTACT+TGG | 0.509796 | 8.3:+18246554 | None:intergenic |
| CTATTCAAACTCAGATATTG+TGG | 0.510682 | 8.3:-18246962 | MS.gene48401:CDS |
| AATCAACTCCTTGACAACCT+TGG | 0.512025 | 8.3:+18246919 | None:intergenic |
| TTGAAGAAAGTTGTTCCATA+TGG | 0.515073 | 8.3:+18247188 | None:intergenic |
| GATACATGGCCAAAACCACT+TGG | 0.515353 | 8.3:+18247218 | None:intergenic |
| TGACGATAAGGAGGAAGATA+AGG | 0.521221 | 8.3:+18247098 | None:intergenic |
| AGTGTAAGGCACCCTGTTGG+TGG | 0.525307 | 8.3:+18246528 | None:intergenic |
| TCTCAGTATATTAATTGGGA+TGG | 0.526757 | 8.3:-18246201 | MS.gene48401:CDS |
| TTTGCAGTCATTGCTTGAGA+AGG | 0.530230 | 8.3:-18246580 | MS.gene48401:intron |
| CCAGATGACAGAGACGACTT+AGG | 0.531180 | 8.3:-18246486 | MS.gene48401:CDS |
| TTGCAGTCATTGCTTGAGAA+GGG | 0.533529 | 8.3:-18246579 | MS.gene48401:intron |
| TCCCAATTAATATACTGAGA+AGG | 0.543751 | 8.3:+18246204 | None:intergenic |
| CATGTATCAAACTCACCATA+TGG | 0.543972 | 8.3:-18247203 | MS.gene48401:CDS |
| GCATAAACTATGACTGCATG+TGG | 0.551677 | 8.3:+18246381 | None:intergenic |
| CAGAATATCTGTTTGTGGAA+TGG | 0.551682 | 8.3:+18247165 | None:intergenic |
| AATAAGTACTTGGAGAGCCA+AGG | 0.559798 | 8.3:-18246936 | MS.gene48401:CDS |
| TTGGAGAGCCAAGGTTGTCA+AGG | 0.574397 | 8.3:-18246927 | MS.gene48401:CDS |
| GTGGATGACCTTGCACAACT+AGG | 0.575276 | 8.3:+18246547 | None:intergenic |
| TTGGATTCTTCATCACAGTA+CGG | 0.581211 | 8.3:+18246340 | None:intergenic |
| CATATGGTGAGTTTGATACA+TGG | 0.583710 | 8.3:+18247204 | None:intergenic |
| TCCACAAACAGATATTCTGA+TGG | 0.587630 | 8.3:-18247161 | MS.gene48401:CDS |
| GGAGACTCTTTCACAGACAC+AGG | 0.589716 | 8.3:-18247263 | MS.gene48401:CDS |
| GGCAACACACACAACGCTGA+AGG | 0.600278 | 8.3:-18247242 | MS.gene48401:CDS |
| GTCTGTGAAAGAGTCTCCGA+AGG | 0.622353 | 8.3:+18247268 | None:intergenic |
| AAGTCGTCTCTGTCATCTGG+AGG | 0.624671 | 8.3:+18246489 | None:intergenic |
| GCCAAGTACCTAGTTGTGCA+AGG | 0.625395 | 8.3:-18246555 | MS.gene48401:CDS |
| GTCAGTGTAAGGCACCCTGT+TGG | 0.629703 | 8.3:+18246525 | None:intergenic |
| TGCAAGGTCATCCACCAACA+GGG | 0.656181 | 8.3:-18246539 | MS.gene48401:CDS |
| TTGGAAAACAAAGAGAGACA+TGG | 0.662787 | 8.3:-18246093 | MS.gene48401:CDS |
| AACACAGTAAAGTTGTAAGG+AGG | 0.674046 | 8.3:+18246267 | None:intergenic |
| GATATGTTCAGTGTCTGCTG+TGG | 0.678417 | 8.3:-18246300 | MS.gene48401:CDS |
| CACAACGCTGAAGGTCCAAG+TGG | 0.686660 | 8.3:-18247233 | MS.gene48401:CDS |
| ATCTGAGTTTGAATAGACTG+AGG | 0.688837 | 8.3:+18246969 | None:intergenic |
| CATAAACTATGACTGCATGT+GGG | 0.692524 | 8.3:+18246382 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATGGTTTATTTGT+TGG | - | chr8.3:18246710-18246729 | MS.gene48401:intron | 15.0% |
| !! | AAAAATGGGAGTTATATATA+TGG | - | chr8.3:18246698-18246717 | MS.gene48401:intron | 20.0% |
| !!! | AAAAGATCAAATGATACTTT+TGG | - | chr8.3:18246343-18246362 | MS.gene48401:CDS | 20.0% |
| !!! | TTTTCCAACAAAAAATCAAA+TGG | + | chr8.3:18247309-18247328 | None:intergenic | 20.0% |
| ! | AAGATTAGTGCACATAAAAA+TGG | - | chr8.3:18246683-18246702 | MS.gene48401:intron | 25.0% |
| ! | AGATTAGTGCACATAAAAAT+GGG | - | chr8.3:18246684-18246703 | MS.gene48401:intron | 25.0% |
| ! | ATTGTGGTTTAATAAGTACT+TGG | - | chr8.3:18246468-18246487 | MS.gene48401:CDS | 25.0% |
| ! | GTTTCTAATATGTTTCTTCA+AGG | - | chr8.3:18247267-18247286 | MS.gene48401:CDS | 25.0% |
| ! | TAAACCATGAATTCTTTGTT+AGG | - | chr8.3:18246398-18246417 | MS.gene48401:CDS | 25.0% |
| ! | TATTCCTAACAAAGAATTCA+TGG | + | chr8.3:18246405-18246424 | None:intergenic | 25.0% |
| ! | TTTCCTGAATTCTTGTAATT+TGG | + | chr8.3:18247007-18247026 | None:intergenic | 25.0% |
| !!! | ATTTTGATGAGACTCTTTTT+TGG | - | chr8.3:18246530-18246549 | MS.gene48401:CDS | 25.0% |
| AACAACCTTATACATAGCTT+CGG | + | chr8.3:18247250-18247269 | None:intergenic | 30.0% | |
| AAGCCAAATTACAAGAATTC+AGG | - | chr8.3:18247001-18247020 | MS.gene48401:CDS | 30.0% | |
| AATGATTATGCTTACACTCT+TGG | - | chr8.3:18246571-18246590 | MS.gene48401:CDS | 30.0% | |
| ACAAAAAATCAAATGGAGGT+TGG | + | chr8.3:18247302-18247321 | None:intergenic | 30.0% | |
| CCCAATTAATATACTGAGAA+GGG | + | chr8.3:18247212-18247231 | None:intergenic | 30.0% | |
| CCCTTCTCAGTATATTAATT+GGG | - | chr8.3:18247209-18247228 | MS.gene48401:CDS | 30.0% | |
| CTAAATACATTGTCAGTGTA+AGG | + | chr8.3:18246903-18246922 | None:intergenic | 30.0% | |
| CTATTCAAACTCAGATATTG+TGG | - | chr8.3:18246452-18246471 | MS.gene48401:CDS | 30.0% | |
| GAAAAAAAATCTCTAGACCA+AGG | + | chr8.3:18246743-18246762 | None:intergenic | 30.0% | |
| TCCAACAAAAAATCAAATGG+AGG | + | chr8.3:18247306-18247325 | None:intergenic | 30.0% | |
| TCCCAATTAATATACTGAGA+AGG | + | chr8.3:18247213-18247232 | None:intergenic | 30.0% | |
| TCTCAGTATATTAATTGGGA+TGG | - | chr8.3:18247213-18247232 | MS.gene48401:CDS | 30.0% | |
| TTCAAGAAAATTTACGCCTT+CGG | - | chr8.3:18246130-18246149 | MS.gene48401:CDS | 30.0% | |
| TTGAAGAAAGTTGTTCCATA+TGG | + | chr8.3:18246229-18246248 | None:intergenic | 30.0% | |
| ! | AAGGCGTAAATTTTCTTGAA+AGG | + | chr8.3:18246130-18246149 | None:intergenic | 30.0% |
| ! | TATGGTTTATTTGTTGGTCT+TGG | - | chr8.3:18246716-18246735 | MS.gene48401:intron | 30.0% |
| !!! | ACCTCCATTTGATTTTTTGT+TGG | - | chr8.3:18247302-18247321 | MS.gene48401:CDS | 30.0% |
| !!! | CTTTTTTGGTTTGGTGAAAT+TGG | - | chr8.3:18246544-18246563 | MS.gene48401:CDS | 30.0% |
| AACACAGTAAAGTTGTAAGG+AGG | + | chr8.3:18247150-18247169 | None:intergenic | 35.0% | |
| ATCTGAGTTTGAATAGACTG+AGG | + | chr8.3:18246448-18246467 | None:intergenic | 35.0% | |
| ATGAAGAATCCAAGCAAGTA+TGG | - | chr8.3:18247084-18247103 | MS.gene48401:CDS | 35.0% | |
| CAGAATATCTGTTTGTGGAA+TGG | + | chr8.3:18246252-18246271 | None:intergenic | 35.0% | |
| CAGTCTCAGAAGATACTATA+AGG | - | chr8.3:18246599-18246618 | MS.gene48401:intron | 35.0% | |
| CATAAACTATGACTGCATGT+GGG | + | chr8.3:18247035-18247054 | None:intergenic | 35.0% | |
| CATATGGTGAGTTTGATACA+TGG | + | chr8.3:18246213-18246232 | None:intergenic | 35.0% | |
| CATGTATCAAACTCACCATA+TGG | - | chr8.3:18246211-18246230 | MS.gene48401:CDS | 35.0% | |
| GCAAACACAGTAAAGTTGTA+AGG | + | chr8.3:18247153-18247172 | None:intergenic | 35.0% | |
| GCCCTTCTCAGTATATTAAT+TGG | - | chr8.3:18247208-18247227 | MS.gene48401:CDS | 35.0% | |
| TCCACAAACAGATATTCTGA+TGG | - | chr8.3:18246253-18246272 | MS.gene48401:CDS | 35.0% | |
| TCCATCAGAATATCTGTTTG+TGG | + | chr8.3:18246257-18246276 | None:intergenic | 35.0% | |
| TCTTACCGAAGCTATGTATA+AGG | - | chr8.3:18247242-18247261 | MS.gene48401:CDS | 35.0% | |
| TCTTTGAATCCATACTTGCT+TGG | + | chr8.3:18247096-18247115 | None:intergenic | 35.0% | |
| TTGGAAAACAAAGAGAGACA+TGG | - | chr8.3:18247321-18247340 | MS.gene48401:CDS | 35.0% | |
| TTGGATTCTTCATCACAGTA+CGG | + | chr8.3:18247077-18247096 | None:intergenic | 35.0% | |
| ! | GATCTTTTGATGTGACGATA+AGG | + | chr8.3:18246331-18246350 | None:intergenic | 35.0% |
| ! | TAAGGTTGTGATTGTTGCTT+AGG | + | chr8.3:18246975-18246994 | None:intergenic | 35.0% |
| ! | TTTACTGTGTTTGCTACTTG+TGG | - | chr8.3:18247159-18247178 | MS.gene48401:CDS | 35.0% |
| !!! | GATGAGACTCTTTTTTGGTT+TGG | - | chr8.3:18246535-18246554 | MS.gene48401:CDS | 35.0% |
| AATAAGTACTTGGAGAGCCA+AGG | - | chr8.3:18246478-18246497 | MS.gene48401:CDS | 40.0% | |
| AATCAACTCCTTGACAACCT+TGG | + | chr8.3:18246498-18246517 | None:intergenic | 40.0% | |
| GCATAAACTATGACTGCATG+TGG | + | chr8.3:18247036-18247055 | None:intergenic | 40.0% | |
| TGACGATAAGGAGGAAGATA+AGG | + | chr8.3:18246319-18246338 | None:intergenic | 40.0% | |
| TTGCAGTCATTGCTTGAGAA+GGG | - | chr8.3:18246835-18246854 | MS.gene48401:CDS | 40.0% | |
| TTTGCAGTCATTGCTTGAGA+AGG | - | chr8.3:18246834-18246853 | MS.gene48401:CDS | 40.0% | |
| ! | CATTGATAATTCGCGAGGAT+CGG | + | chr8.3:18246776-18246795 | None:intergenic | 40.0% |
| ! | CTTTTGATGTGACGATAAGG+AGG | + | chr8.3:18246328-18246347 | None:intergenic | 40.0% |
| !! | GAAAGCATTGATAATTCGCG+AGG | + | chr8.3:18246781-18246800 | None:intergenic | 40.0% |
| !! | GTAATTTGGCTTGCAGCATA+AGG | + | chr8.3:18246993-18247012 | None:intergenic | 40.0% |
| !! | TATTTGTTGGTCTTGGACCT+TGG | - | chr8.3:18246723-18246742 | MS.gene48401:intron | 40.0% |
| ACCTTGCACAACTAGGTACT+TGG | + | chr8.3:18246863-18246882 | None:intergenic | 45.0% | |
| CTAGTGCAGACAGTAGCATT+AGG | + | chr8.3:18247189-18247208 | None:intergenic | 45.0% | |
| GATACATGGCCAAAACCACT+TGG | + | chr8.3:18246199-18246218 | None:intergenic | 45.0% | |
| GATATGTTCAGTGTCTGCTG+TGG | - | chr8.3:18247114-18247133 | MS.gene48401:CDS | 45.0% | |
| !! | GGTGTTAACTTTGCTGTTGC+TGG | - | chr8.3:18246364-18246383 | MS.gene48401:CDS | 45.0% |
| AAGTCGTCTCTGTCATCTGG+AGG | + | chr8.3:18246928-18246947 | None:intergenic | 50.0% | |
| CAGTGTCTCAGGAGCTTTAC+AGG | - | chr8.3:18246636-18246655 | MS.gene48401:intron | 50.0% | |
| CCAGATGACAGAGACGACTT+AGG | - | chr8.3:18246928-18246947 | MS.gene48401:CDS | 50.0% | |
| CCTAAGTCGTCTCTGTCATC+TGG | + | chr8.3:18246931-18246950 | None:intergenic | 50.0% | |
| CTGTAAAGCTCCTGAGACAC+TGG | + | chr8.3:18246638-18246657 | None:intergenic | 50.0% | |
| CTTGCAATGTCCAGTGTCTC+AGG | - | chr8.3:18246625-18246644 | MS.gene48401:intron | 50.0% | |
| GCCAAGTACCTAGTTGTGCA+AGG | - | chr8.3:18246859-18246878 | MS.gene48401:CDS | 50.0% | |
| GGAGACTCTTTCACAGACAC+AGG | - | chr8.3:18246151-18246170 | MS.gene48401:CDS | 50.0% | |
| GTCTGTGAAAGAGTCTCCGA+AGG | + | chr8.3:18246149-18246168 | None:intergenic | 50.0% | |
| GTGGATGACCTTGCACAACT+AGG | + | chr8.3:18246870-18246889 | None:intergenic | 50.0% | |
| TGCAAGGTCATCCACCAACA+GGG | - | chr8.3:18246875-18246894 | MS.gene48401:CDS | 50.0% | |
| TTCAGTGTCTGCTGTGGATC+AGG | - | chr8.3:18247120-18247139 | MS.gene48401:CDS | 50.0% | |
| TTGGAGAGCCAAGGTTGTCA+AGG | - | chr8.3:18246487-18246506 | MS.gene48401:CDS | 50.0% | |
| ! | GCTGAAGGTCCAAGTGGTTT+TGG | - | chr8.3:18246187-18246206 | MS.gene48401:CDS | 50.0% |
| CACAACGCTGAAGGTCCAAG+TGG | - | chr8.3:18246181-18246200 | MS.gene48401:CDS | 55.0% | |
| GGCAACACACACAACGCTGA+AGG | - | chr8.3:18246172-18246191 | MS.gene48401:CDS | 55.0% | |
| GTGCAAGGTCATCCACCAAC+AGG | - | chr8.3:18246874-18246893 | MS.gene48401:CDS | 55.0% | |
| ! | AGTGTAAGGCACCCTGTTGG+TGG | + | chr8.3:18246889-18246908 | None:intergenic | 55.0% |
| ! | GTCAGTGTAAGGCACCCTGT+TGG | + | chr8.3:18246892-18246911 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 18246089 | 18247347 | 18246089 | ID=MS.gene48401 |
| chr8.3 | mRNA | 18246089 | 18247347 | 18246089 | ID=MS.gene48401.t1;Parent=MS.gene48401 |
| chr8.3 | exon | 18246779 | 18247347 | 18246779 | ID=MS.gene48401.t1.exon1;Parent=MS.gene48401.t1 |
| chr8.3 | CDS | 18246779 | 18247347 | 18246779 | ID=cds.MS.gene48401.t1;Parent=MS.gene48401.t1 |
| chr8.3 | exon | 18246089 | 18246595 | 18246089 | ID=MS.gene48401.t1.exon2;Parent=MS.gene48401.t1 |
| chr8.3 | CDS | 18246089 | 18246595 | 18246089 | ID=cds.MS.gene48401.t1;Parent=MS.gene48401.t1 |
| Gene Sequence |
| Protein sequence |
