Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050602.t1 | XP_003626516.2 | 92.3 | 117 | 9 | 0 | 1 | 117 | 1 | 117 | 1.50E-60 | 241.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050602.t1 | Q9CQZ7 | 39.5 | 114 | 60 | 3 | 3 | 116 | 4 | 108 | 3.9e-17 | 89.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050602.t1 | G7L310 | 92.3 | 117 | 9 | 0 | 1 | 117 | 1 | 117 | 1.1e-60 | 241.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050602 | MS.gene22836 | 0.819565 | 1.09E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene025949 | MS.gene050602 | PPI |
| MS.gene004126 | MS.gene050602 | PPI |
| MS.gene024486 | MS.gene050602 | PPI |
| MS.gene65289 | MS.gene050602 | PPI |
| MS.gene050602 | MS.gene65249 | PPI |
| MS.gene050602 | MS.gene56011 | PPI |
| MS.gene049822 | MS.gene050602 | PPI |
| MS.gene54479 | MS.gene050602 | PPI |
| MS.gene80957 | MS.gene050602 | PPI |
| MS.gene050602 | MS.gene036302 | PPI |
| MS.gene24295 | MS.gene050602 | PPI |
| MS.gene00182 | MS.gene050602 | PPI |
| MS.gene050602 | MS.gene64653 | PPI |
| MS.gene058216 | MS.gene050602 | PPI |
| MS.gene050602 | MS.gene65289 | PPI |
| MS.gene050602 | MS.gene051008 | PPI |
| MS.gene050602 | MS.gene81051 | PPI |
| MS.gene027891 | MS.gene050602 | PPI |
| MS.gene050602 | MS.gene27326 | PPI |
| MS.gene049824 | MS.gene050602 | PPI |
| MS.gene036302 | MS.gene050602 | PPI |
| MS.gene22836 | MS.gene050602 | PPI |
| MS.gene050602 | MS.gene08465 | PPI |
| MS.gene004127 | MS.gene050602 | PPI |
| MS.gene90078 | MS.gene050602 | PPI |
| MS.gene26950 | MS.gene050602 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050602.t1 | MTR_7g116750 | 92.308 | 117 | 9 | 0 | 1 | 117 | 1 | 117 | 1.43e-79 | 229 |
| MS.gene050602.t1 | MTR_5g030180 | 87.069 | 116 | 14 | 1 | 1 | 116 | 14 | 128 | 7.92e-73 | 213 |
| MS.gene050602.t1 | MTR_5g030180 | 87.069 | 116 | 14 | 1 | 1 | 116 | 1 | 115 | 8.98e-73 | 212 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050602.t1 | AT4G07950 | 43.966 | 116 | 54 | 4 | 1 | 116 | 1 | 105 | 7.70e-29 | 100 |
| MS.gene050602.t1 | AT1G01210 | 42.241 | 116 | 56 | 3 | 1 | 116 | 1 | 105 | 4.61e-28 | 99.0 |
| MS.gene050602.t1 | AT1G01210 | 42.241 | 116 | 56 | 3 | 1 | 116 | 1 | 105 | 4.61e-28 | 99.0 |
| MS.gene050602.t1 | AT1G01210 | 42.241 | 116 | 56 | 3 | 1 | 116 | 1 | 105 | 4.61e-28 | 99.0 |
Find 37 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTGAGGATGGCGACAATT+TGG | 0.237510 | 7.3:-1395282 | None:intergenic |
| ATTTCATCATGGGAGATAAT+AGG | 0.283528 | 7.3:-1393773 | None:intergenic |
| GCCTGGATTGGGCAAATATA+TGG | 0.304407 | 7.3:-1393602 | None:intergenic |
| CTTGAGGATGGCGACAATTT+GGG | 0.324696 | 7.3:-1395281 | None:intergenic |
| CACTCGTAAAATATTGTTGC+AGG | 0.338187 | 7.3:-1395342 | None:intergenic |
| TAACATACCCCTGCCTGGAT+TGG | 0.394502 | 7.3:-1393614 | None:intergenic |
| TTTCATCATGGGAGATAATA+GGG | 0.399931 | 7.3:-1393772 | None:intergenic |
| AAAGTAGTACTGTCGGCTTT+TGG | 0.405726 | 7.3:-1393809 | None:intergenic |
| AACATACCCCTGCCTGGATT+GGG | 0.431360 | 7.3:-1393613 | None:intergenic |
| TCCATATATTTGCCCAATCC+AGG | 0.439317 | 7.3:+1393601 | MS.gene050602:CDS |
| ATTCTTGTTGATTTCATCAT+GGG | 0.448511 | 7.3:-1393783 | None:intergenic |
| TATTCTTGTTGATTTCATCA+TGG | 0.453333 | 7.3:-1393784 | None:intergenic |
| GTGCCGTGACTCGTAGTATT+GGG | 0.460519 | 7.3:-1393545 | None:intergenic |
| ATATTTATCCCTCCTTCCAC+TGG | 0.465128 | 7.3:-1395386 | None:intergenic |
| AGAGAAGGCAAATGCTCGTC+AGG | 0.467028 | 7.3:+1393738 | MS.gene050602:CDS |
| TGTGCCGTGACTCGTAGTAT+TGG | 0.489174 | 7.3:-1393546 | None:intergenic |
| TATATTTGCCCAATCCAGGC+AGG | 0.490476 | 7.3:+1393605 | MS.gene050602:CDS |
| GGCAAATGCTCGTCAGGAAA+GGG | 0.498231 | 7.3:+1393744 | MS.gene050602:CDS |
| GTACATAACATACCCCTGCC+TGG | 0.528478 | 7.3:-1393619 | None:intergenic |
| AGGCAAATGCTCGTCAGGAA+AGG | 0.543690 | 7.3:+1393743 | MS.gene050602:CDS |
| TCCTCAAGCTAGTTATCGCA+TGG | 0.558375 | 7.3:+1395296 | MS.gene050602:CDS |
| TCAGCATGCTCCCACACATA+GGG | 0.562374 | 7.3:-1393511 | None:intergenic |
| ATCAGCATGCTCCCACACAT+AGG | 0.581470 | 7.3:-1393512 | None:intergenic |
| TACAGGTTAAGATTAAGAGA+AGG | 0.585633 | 7.3:+1393723 | MS.gene050602:intron |
| TGCGATAACTAGCTTGAGGA+TGG | 0.595177 | 7.3:-1395293 | None:intergenic |
| TGTGGACACCAGTGGAAGGA+GGG | 0.602718 | 7.3:+1395378 | MS.gene050602:CDS |
| ATATTTGCCCAATCCAGGCA+GGG | 0.610625 | 7.3:+1393606 | MS.gene050602:CDS |
| GGATGGCGACAATTTGGGCA+AGG | 0.613537 | 7.3:-1395276 | None:intergenic |
| GTGTGGACACCAGTGGAAGG+AGG | 0.617591 | 7.3:+1395377 | MS.gene050602:CDS |
| TATTTGCCCAATCCAGGCAG+GGG | 0.628783 | 7.3:+1393607 | MS.gene050602:CDS |
| TTACCCAATACTACGAGTCA+CGG | 0.630549 | 7.3:+1393542 | MS.gene050602:CDS |
| TCCATGCGATAACTAGCTTG+AGG | 0.632752 | 7.3:-1395297 | None:intergenic |
| AAAGTGTGGACACCAGTGGA+AGG | 0.634668 | 7.3:+1395374 | MS.gene050602:CDS |
| ATCAAAAGTGTGGACACCAG+TGG | 0.638482 | 7.3:+1395370 | MS.gene050602:CDS |
| GGCAAATATATGGACAAGTG+AGG | 0.649591 | 7.3:-1393592 | None:intergenic |
| ACGGCACATCTCATCGCACA+AGG | 0.653666 | 7.3:+1393561 | MS.gene050602:CDS |
| GAGTGCTTGAATCAAAAGTG+TGG | 0.674641 | 7.3:+1395360 | MS.gene050602:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTAACATTTTTTATGGTT+TGG | + | chr7.3:1394713-1394732 | MS.gene050602:intron | 15.0% |
| !! | AAAGAAATAACAAAGAAACA+AGG | - | chr7.3:1395188-1395207 | None:intergenic | 20.0% |
| !! | AATTAACATTGTTTATGGTT+TGG | + | chr7.3:1394848-1394867 | MS.gene050602:intron | 20.0% |
| !! | AGAAAAGGAAGAAATAAAAA+TGG | - | chr7.3:1395221-1395240 | None:intergenic | 20.0% |
| !! | TTCTTAAAAGCTCATAAATA+TGG | - | chr7.3:1394315-1394334 | None:intergenic | 20.0% |
| !! | TTGTGAATTAACATTGTTTA+TGG | + | chr7.3:1394843-1394862 | MS.gene050602:intron | 20.0% |
| !!! | AATACTGTTTGTTTTTGTTA+AGG | + | chr7.3:1395141-1395160 | MS.gene050602:intron | 20.0% |
| !!! | ATACATGATAAAAGTATTAC+AGG | - | chr7.3:1394201-1394220 | None:intergenic | 20.0% |
| !!! | ATACTGTTTGTTTTTGTTAA+GGG | + | chr7.3:1395142-1395161 | MS.gene050602:intron | 20.0% |
| !!! | ATCATGTTTTTTTACTTTAC+AGG | + | chr7.3:1393706-1393725 | MS.gene050602:intron | 20.0% |
| !!! | ATTTATGATCTTTAAGAAGT+AGG | + | chr7.3:1394510-1394529 | MS.gene050602:intron | 20.0% |
| !!! | CTTTTCTTTTACATGATTTA+CGG | + | chr7.3:1394671-1394690 | MS.gene050602:intron | 20.0% |
| !!! | TGTCTTTTTTACATGATTTA+CGG | + | chr7.3:1394806-1394825 | MS.gene050602:intron | 20.0% |
| !!! | TTGCGAATTAACATTTTTTA+TGG | + | chr7.3:1394708-1394727 | MS.gene050602:intron | 20.0% |
| !!! | TTTATGATCTTTAAGAAGTA+GGG | + | chr7.3:1394511-1394530 | MS.gene050602:intron | 20.0% |
| ! | AACTAATTGGGTAATAGAAA+TGG | - | chr7.3:1393658-1393677 | None:intergenic | 25.0% |
| ! | AAGAAAGAAAGATGAATTGA+AGG | - | chr7.3:1393682-1393701 | None:intergenic | 25.0% |
| ! | AGAACAAAACAGTATTACAA+CGG | - | chr7.3:1395105-1395124 | None:intergenic | 25.0% |
| ! | ATAGCTTAAAAGTTCCTATT+AGG | - | chr7.3:1394434-1394453 | None:intergenic | 25.0% |
| ! | ATGAATTGAAGGTAACTAAT+TGG | - | chr7.3:1393671-1393690 | None:intergenic | 25.0% |
| ! | CATAAACCTTCCAAATATAT+TGG | - | chr7.3:1394152-1394171 | None:intergenic | 25.0% |
| ! | CATATCAAATTTCTGTGATT+TGG | + | chr7.3:1394260-1394279 | MS.gene050602:intron | 25.0% |
| ! | CTTTAGTCAATAAGATAAGA+GGG | - | chr7.3:1394034-1394053 | None:intergenic | 25.0% |
| ! | GAAAAAAAGAAAAGAGGAAT+GGG | - | chr7.3:1395246-1395265 | None:intergenic | 25.0% |
| ! | GATATAACTCCTAATAAGAA+TGG | + | chr7.3:1394472-1394491 | MS.gene050602:intron | 25.0% |
| ! | TAAAAGAAAAGTAGTACTGT+CGG | - | chr7.3:1393819-1393838 | None:intergenic | 25.0% |
| ! | TAAACTCAAAAGTTCCTATT+AGG | - | chr7.3:1394601-1394620 | None:intergenic | 25.0% |
| ! | TCTTTAGTCAATAAGATAAG+AGG | - | chr7.3:1394035-1394054 | None:intergenic | 25.0% |
| ! | TGAATTGAAGGTAACTAATT+GGG | - | chr7.3:1393670-1393689 | None:intergenic | 25.0% |
| ! | TTTAGTCAATAAGATAAGAG+GGG | - | chr7.3:1394033-1394052 | None:intergenic | 25.0% |
| ! | TTTGATTATCAACTCCTAAT+AGG | + | chr7.3:1394392-1394411 | MS.gene050602:intron | 25.0% |
| ! | TTTGATTATCAACTCCTAAT+TGG | + | chr7.3:1394392-1394411 | MS.gene050602:intron | 25.0% |
| !! | AACTGATTGTACTAGTTTAT+TGG | + | chr7.3:1393972-1393991 | MS.gene050602:intron | 25.0% |
| !! | GAAATTTGATATGTATTGAC+AGG | - | chr7.3:1394253-1394272 | None:intergenic | 25.0% |
| !!! | ATTCTTGTTGATTTCATCAT+GGG | - | chr7.3:1393786-1393805 | None:intergenic | 25.0% |
| !!! | GTGATTTGGTTTTAACTTTA+AGG | + | chr7.3:1394274-1394293 | MS.gene050602:intron | 25.0% |
| !!! | TATTCTTGTTGATTTCATCA+TGG | - | chr7.3:1393787-1393806 | None:intergenic | 25.0% |
| !!! | TTATGAGCTTTTAAGAAGTA+GGG | + | chr7.3:1394318-1394337 | MS.gene050602:intron | 25.0% |
| !!! | TTTATGAGCTTTTAAGAAGT+AGG | + | chr7.3:1394317-1394336 | MS.gene050602:intron | 25.0% |
| !!! | TTTGGTTTTAACTTTAAGGA+CGG | + | chr7.3:1394278-1394297 | MS.gene050602:intron | 25.0% |
| AAGTATTACAGGCTTAGATT+TGG | - | chr7.3:1394190-1394209 | None:intergenic | 30.0% | |
| AATTAACATTGTTCGTGGTT+TGG | + | chr7.3:1394983-1395002 | MS.gene050602:intron | 30.0% | |
| AGCAAGACAAACTTAATACA+AGG | - | chr7.3:1394628-1394647 | None:intergenic | 30.0% | |
| ATCTAATGCAAAGGGATAAA+TGG | + | chr7.3:1394076-1394095 | MS.gene050602:intron | 30.0% | |
| ATTTCATCATGGGAGATAAT+AGG | - | chr7.3:1393776-1393795 | None:intergenic | 30.0% | |
| GGAAAAAAAGAAAAGAGGAA+TGG | - | chr7.3:1395247-1395266 | None:intergenic | 30.0% | |
| TACAGGTTAAGATTAAGAGA+AGG | + | chr7.3:1393723-1393742 | MS.gene050602:intron | 30.0% | |
| TCTAATGCAAAGGGATAAAT+GGG | + | chr7.3:1394077-1394096 | MS.gene050602:intron | 30.0% | |
| TGAATGTGATCTAATGCAAA+GGG | + | chr7.3:1394068-1394087 | MS.gene050602:intron | 30.0% | |
| TTGAATGTGATCTAATGCAA+AGG | + | chr7.3:1394067-1394086 | MS.gene050602:intron | 30.0% | |
| TTGAGCATACCATTCTTATT+AGG | - | chr7.3:1394484-1394503 | None:intergenic | 30.0% | |
| TTGAGGTCATCCAATATATT+TGG | + | chr7.3:1394139-1394158 | MS.gene050602:intron | 30.0% | |
| TTGTGAATTAACATTGTTCG+TGG | + | chr7.3:1394978-1394997 | MS.gene050602:intron | 30.0% | |
| TTTCATCATGGGAGATAATA+GGG | - | chr7.3:1393775-1393794 | None:intergenic | 30.0% | |
| ! | CATGTAAAAGAAAAGCACAA+TGG | - | chr7.3:1394666-1394685 | None:intergenic | 30.0% |
| !! | TATGAGCTTTTAAGAAGTAG+GGG | + | chr7.3:1394319-1394338 | MS.gene050602:intron | 30.0% |
| !! | TTATGGTTTGGTTATTTGAG+CGG | + | chr7.3:1394725-1394744 | MS.gene050602:intron | 30.0% |
| AGGAGGGAAAAAAAGAAAAG+AGG | - | chr7.3:1395252-1395271 | None:intergenic | 35.0% | |
| CACTCGTAAAATATTGTTGC+AGG | - | chr7.3:1395345-1395364 | None:intergenic | 35.0% | |
| CTAATGCAAAGGGATAAATG+GGG | + | chr7.3:1394078-1394097 | MS.gene050602:intron | 35.0% | |
| GGTCATCCAATATATTTGGA+AGG | + | chr7.3:1394143-1394162 | MS.gene050602:intron | 35.0% | |
| TACATGATTTACGGTTTGAG+CGG | + | chr7.3:1394680-1394699 | MS.gene050602:intron | 35.0% | |
| TTGACTCAACAGTTCCAATT+AGG | - | chr7.3:1394409-1394428 | None:intergenic | 35.0% | |
| ! | TATTTTTCCTAGCACTGTTG+AGG | + | chr7.3:1394122-1394141 | MS.gene050602:intron | 35.0% |
| ! | TCATTGTGGACTTGTTTACT+TGG | + | chr7.3:1393886-1393905 | MS.gene050602:intron | 35.0% |
| ! | TGTACTAGTTTATTGGACGT+TGG | + | chr7.3:1393979-1393998 | MS.gene050602:intron | 35.0% |
| ! | TTCAATCACCGTTTTGTCTA+GGG | + | chr7.3:1394883-1394902 | MS.gene050602:intron | 35.0% |
| AAAGAGGAATGGGTGAGAAA+AGG | - | chr7.3:1395236-1395255 | None:intergenic | 40.0% | |
| AAGTAGGGAAGTAGAAGTCA+TGG | + | chr7.3:1394526-1394545 | MS.gene050602:intron | 40.0% | |
| AGTCCACAATGAGCTAAAGA+AGG | - | chr7.3:1393878-1393897 | None:intergenic | 40.0% | |
| CTGTTGAGTCAACTCCTAAT+AGG | + | chr7.3:1394417-1394436 | MS.gene050602:intron | 40.0% | |
| GAGTGCTTGAATCAAAAGTG+TGG | + | chr7.3:1395360-1395379 | MS.gene050602:CDS | 40.0% | |
| GGCAAATATATGGACAAGTG+AGG | - | chr7.3:1393595-1393614 | None:intergenic | 40.0% | |
| TCCATATATTTGCCCAATCC+AGG | + | chr7.3:1393601-1393620 | MS.gene050602:CDS | 40.0% | |
| TTACCCAATACTACGAGTCA+CGG | + | chr7.3:1393542-1393561 | MS.gene050602:CDS | 40.0% | |
| ! | CATCCTTCTTTAGCTCATTG+TGG | + | chr7.3:1393872-1393891 | MS.gene050602:intron | 40.0% |
| ! | GGGGCTTTAGTTTAGTGTAA+GGG | + | chr7.3:1394097-1394116 | MS.gene050602:intron | 40.0% |
| ! | GTTCAATCACCGTTTTGTCT+AGG | + | chr7.3:1394882-1394901 | MS.gene050602:intron | 40.0% |
| ! | TGGGGCTTTAGTTTAGTGTA+AGG | + | chr7.3:1394096-1394115 | MS.gene050602:intron | 40.0% |
| ! | TTCAACCACCGTTTTGTCTA+GGG | + | chr7.3:1394748-1394767 | MS.gene050602:intron | 40.0% |
| !! | TCGTGGTTTGGTTATTTGAG+CGG | + | chr7.3:1394995-1395014 | MS.gene050602:intron | 40.0% |
| !!! | AAAGTAGTACTGTCGGCTTT+TGG | - | chr7.3:1393812-1393831 | None:intergenic | 40.0% |
| ATATTTGCCCAATCCAGGCA+GGG | + | chr7.3:1393606-1393625 | MS.gene050602:CDS | 45.0% | |
| CTCAAACCAAGACAGAACAG+TGG | - | chr7.3:1395026-1395045 | None:intergenic | 45.0% | |
| CTTGAGGATGGCGACAATTT+GGG | - | chr7.3:1395284-1395303 | None:intergenic | 45.0% | |
| GTTCAACCACTGTTCTGTCT+TGG | + | chr7.3:1395017-1395036 | MS.gene050602:intron | 45.0% | |
| TATATTTGCCCAATCCAGGC+AGG | + | chr7.3:1393605-1393624 | MS.gene050602:CDS | 45.0% | |
| TATTACAACGGACATCGAGC+AGG | - | chr7.3:1395093-1395112 | None:intergenic | 45.0% | |
| TCCTCAAGCTAGTTATCGCA+TGG | + | chr7.3:1395296-1395315 | MS.gene050602:CDS | 45.0% | |
| ! | AATTTGGGCAAGGTACTAGG+AGG | - | chr7.3:1395269-1395288 | None:intergenic | 45.0% |
| ! | AGTAGGGGAAGTATAAGTCG+TGG | + | chr7.3:1394334-1394353 | MS.gene050602:intron | 45.0% |
| ! | ATCAAAAGTGTGGACACCAG+TGG | + | chr7.3:1395370-1395389 | MS.gene050602:CDS | 45.0% |
| ! | ATGGAGTTTTGCCCTATGTG+TGG | + | chr7.3:1393500-1393519 | MS.gene050602:CDS | 45.0% |
| ! | ATTTGGGCAAGGTACTAGGA+GGG | - | chr7.3:1395268-1395287 | None:intergenic | 45.0% |
| ! | CTGTTCTGTCTTGGTTTGAG+CGG | + | chr7.3:1395026-1395045 | MS.gene050602:intron | 45.0% |
| ! | GACAATTTGGGCAAGGTACT+AGG | - | chr7.3:1395272-1395291 | None:intergenic | 45.0% |
| ! | GCCTGGATTGGGCAAATATA+TGG | - | chr7.3:1393605-1393624 | None:intergenic | 45.0% |
| ! | GTTCAACCACCGTTTTGTCT+AGG | + | chr7.3:1394747-1394766 | MS.gene050602:intron | 45.0% |
| ! | TCCATGCGATAACTAGCTTG+AGG | - | chr7.3:1395300-1395319 | None:intergenic | 45.0% |
| ! | TGCGATAACTAGCTTGAGGA+TGG | - | chr7.3:1395296-1395315 | None:intergenic | 45.0% |
| ! | TGGAGTTTTGCCCTATGTGT+GGG | + | chr7.3:1393501-1393520 | MS.gene050602:CDS | 45.0% |
| AAAGTGTGGACACCAGTGGA+AGG | + | chr7.3:1395374-1395393 | MS.gene050602:CDS | 50.0% | |
| AACATACCCCTGCCTGGATT+GGG | - | chr7.3:1393616-1393635 | None:intergenic | 50.0% | |
| AGAGAAGGCAAATGCTCGTC+AGG | + | chr7.3:1393738-1393757 | MS.gene050602:CDS | 50.0% | |
| AGGCAAATGCTCGTCAGGAA+AGG | + | chr7.3:1393743-1393762 | MS.gene050602:CDS | 50.0% | |
| ATCAGCATGCTCCCACACAT+AGG | - | chr7.3:1393515-1393534 | None:intergenic | 50.0% | |
| CCGCTTGACCCTAGACAAAA+CGG | - | chr7.3:1394894-1394913 | None:intergenic | 50.0% | |
| GCTTGAGGATGGCGACAATT+TGG | - | chr7.3:1395285-1395304 | None:intergenic | 50.0% | |
| GGCAAATGCTCGTCAGGAAA+GGG | + | chr7.3:1393744-1393763 | MS.gene050602:CDS | 50.0% | |
| GGGAAGTAGAAGTCATGGTC+TGG | + | chr7.3:1394531-1394550 | MS.gene050602:intron | 50.0% | |
| GTACATAACATACCCCTGCC+TGG | - | chr7.3:1393622-1393641 | None:intergenic | 50.0% | |
| GTGCCGTGACTCGTAGTATT+GGG | - | chr7.3:1393548-1393567 | None:intergenic | 50.0% | |
| TAACATACCCCTGCCTGGAT+TGG | - | chr7.3:1393617-1393636 | None:intergenic | 50.0% | |
| TATTTGCCCAATCCAGGCAG+GGG | + | chr7.3:1393607-1393626 | MS.gene050602:CDS | 50.0% | |
| TCAGCATGCTCCCACACATA+GGG | - | chr7.3:1393514-1393533 | None:intergenic | 50.0% | |
| TGGATGACCTCAACAGTGCT+AGG | - | chr7.3:1394132-1394151 | None:intergenic | 50.0% | |
| TGTGCCGTGACTCGTAGTAT+TGG | - | chr7.3:1393549-1393568 | None:intergenic | 50.0% | |
| ! | GGGAAGTATAAGTCGTGGTG+TGG | + | chr7.3:1394339-1394358 | MS.gene050602:intron | 50.0% |
| !! | CCGTTTTGTCTAGGGTCAAG+CGG | + | chr7.3:1394891-1394910 | MS.gene050602:intron | 50.0% |
| ACGGCACATCTCATCGCACA+AGG | + | chr7.3:1393561-1393580 | MS.gene050602:CDS | 55.0% | |
| CCGCTCGACCCTAGACAAAA+CGG | - | chr7.3:1394759-1394778 | None:intergenic | 55.0% | |
| CTCGACCCTAGACAAAACGG+TGG | - | chr7.3:1394756-1394775 | None:intergenic | 55.0% | |
| GGATGGCGACAATTTGGGCA+AGG | - | chr7.3:1395279-1395298 | None:intergenic | 55.0% | |
| TGTGGACACCAGTGGAAGGA+GGG | + | chr7.3:1395378-1395397 | MS.gene050602:CDS | 55.0% | |
| !! | CCGTTTTGTCTAGGGTCGAG+CGG | + | chr7.3:1394756-1394775 | MS.gene050602:intron | 55.0% |
| GTGTGGACACCAGTGGAAGG+AGG | + | chr7.3:1395377-1395396 | MS.gene050602:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 1393500 | 1395404 | 1393500 | ID=MS.gene050602 |
| chr7.3 | mRNA | 1393500 | 1395404 | 1393500 | ID=MS.gene050602.t1;Parent=MS.gene050602 |
| chr7.3 | exon | 1393500 | 1393628 | 1393500 | ID=MS.gene050602.t1.exon1;Parent=MS.gene050602.t1 |
| chr7.3 | CDS | 1393500 | 1393628 | 1393500 | ID=cds.MS.gene050602.t1;Parent=MS.gene050602.t1 |
| chr7.3 | exon | 1393728 | 1393821 | 1393728 | ID=MS.gene050602.t1.exon2;Parent=MS.gene050602.t1 |
| chr7.3 | CDS | 1393728 | 1393821 | 1393728 | ID=cds.MS.gene050602.t1;Parent=MS.gene050602.t1 |
| chr7.3 | exon | 1395274 | 1395404 | 1395274 | ID=MS.gene050602.t1.exon3;Parent=MS.gene050602.t1 |
| chr7.3 | CDS | 1395274 | 1395404 | 1395274 | ID=cds.MS.gene050602.t1;Parent=MS.gene050602.t1 |
| Gene Sequence |
| Protein sequence |
