Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24295.t1 | KEH18521.1 | 84.4 | 1121 | 167 | 4 | 1 | 1119 | 872 | 1986 | 0.00E+00 | 1914.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24295.t1 | F4KD38 | 72.4 | 1132 | 296 | 5 | 1 | 1119 | 17 | 1145 | 0.0e+00 | 1652.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24295.t1 | A0A072TMT8 | 84.4 | 1121 | 167 | 4 | 1 | 1119 | 872 | 1986 | 0.0e+00 | 1914.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24295.t1 | MTR_8g023445 | 84.389 | 1121 | 167 | 4 | 1 | 1119 | 872 | 1986 | 0.0 | 1959 |
MS.gene24295.t1 | MTR_1g023500 | 37.586 | 1168 | 635 | 23 | 17 | 1119 | 30 | 1168 | 0.0 | 730 |
MS.gene24295.t1 | MTR_3g105990 | 30.924 | 1190 | 659 | 38 | 23 | 1119 | 53 | 1172 | 1.78e-150 | 481 |
MS.gene24295.t1 | MTR_1g022135 | 77.860 | 271 | 25 | 3 | 78 | 346 | 1 | 238 | 2.66e-133 | 407 |
MS.gene24295.t1 | MTR_1g022135 | 84.906 | 53 | 8 | 0 | 1067 | 1119 | 229 | 281 | 1.73e-22 | 99.8 |
MS.gene24295.t1 | MTR_4g124030 | 27.773 | 1217 | 681 | 38 | 23 | 1117 | 25 | 1165 | 1.74e-114 | 384 |
MS.gene24295.t1 | MTR_0002s0510 | 24.608 | 638 | 415 | 18 | 465 | 1071 | 467 | 1069 | 2.96e-40 | 163 |
MS.gene24295.t1 | MTR_1g022125 | 95.588 | 68 | 3 | 0 | 1 | 68 | 1 | 68 | 6.02e-40 | 142 |
MS.gene24295.t1 | MTR_4g051130 | 26.562 | 512 | 280 | 12 | 647 | 1071 | 496 | 998 | 2.89e-34 | 144 |
MS.gene24295.t1 | MTR_0189s0050 | 26.305 | 498 | 279 | 21 | 23 | 465 | 51 | 515 | 8.54e-33 | 134 |
MS.gene24295.t1 | MTR_8g023440 | 74.510 | 51 | 13 | 0 | 474 | 524 | 102 | 152 | 1.25e-16 | 79.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24295.t1 | AT5G45140 | 72.438 | 1132 | 296 | 5 | 1 | 1119 | 17 | 1145 | 0.0 | 1694 |
MS.gene24295.t1 | AT5G45140 | 72.438 | 1132 | 296 | 5 | 1 | 1119 | 17 | 1145 | 0.0 | 1694 |
MS.gene24295.t1 | AT5G45140 | 70.234 | 813 | 230 | 2 | 1 | 802 | 17 | 828 | 0.0 | 1172 |
MS.gene24295.t1 | AT4G21710 | 36.815 | 1168 | 648 | 21 | 15 | 1119 | 25 | 1165 | 0.0 | 716 |
MS.gene24295.t1 | AT3G23780 | 29.135 | 1191 | 704 | 30 | 3 | 1119 | 32 | 1156 | 2.59e-137 | 446 |
MS.gene24295.t1 | AT3G23780 | 29.135 | 1191 | 704 | 30 | 3 | 1119 | 32 | 1156 | 2.59e-137 | 446 |
MS.gene24295.t1 | AT3G18090 | 30.403 | 1092 | 644 | 27 | 90 | 1119 | 2 | 1039 | 5.66e-133 | 431 |
MS.gene24295.t1 | AT1G29940 | 27.227 | 1201 | 733 | 35 | 10 | 1117 | 3 | 1155 | 5.40e-108 | 365 |
MS.gene24295.t1 | AT3G18090 | 28.872 | 904 | 546 | 23 | 90 | 948 | 2 | 853 | 2.61e-92 | 317 |
MS.gene24295.t1 | AT3G18090 | 28.872 | 904 | 546 | 23 | 90 | 948 | 2 | 853 | 3.26e-92 | 316 |
MS.gene24295.t1 | ATCG00190 | 29.380 | 371 | 228 | 8 | 728 | 1071 | 650 | 1013 | 1.25e-33 | 141 |
Find 231 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTATTACAGTGCTATATTT+TGG | 0.104611 | 1.1:-2290929 | MS.gene24295:intron |
CTGCTCCTGGCGAAATTATT+AGG | 0.208803 | 1.1:-2287236 | MS.gene24295:CDS |
GTTATCATTTATAAGTTCTT+TGG | 0.212782 | 1.1:-2292556 | MS.gene24295:CDS |
GATAACCTGATAAGTGTTTC+TGG | 0.217020 | 1.1:+2289509 | None:intergenic |
CAATCAATTGTACAATTTCT+TGG | 0.219014 | 1.1:+2295681 | None:intergenic |
CAAATACCTTTCTCAGAAAA+TGG | 0.223537 | 1.1:+2286751 | None:intergenic |
TGTCTAGTCATCAGGGTCTT+AGG | 0.225042 | 1.1:+2281734 | None:intergenic |
TTTCATTATGGAAGTGCTTT+TGG | 0.226653 | 1.1:-2284491 | MS.gene24295:CDS |
GGGAAAGACTTCATTTATTC+AGG | 0.231341 | 1.1:-2284318 | MS.gene24295:intron |
GTGTGTTCGTAGCTTCTTAA+TGG | 0.247710 | 1.1:-2292763 | MS.gene24295:intron |
TATCCAATAGGTTCCTCTTA+TGG | 0.266141 | 1.1:-2295735 | MS.gene24295:intron |
TCATCACATGAAAGAGTTAA+AGG | 0.266666 | 1.1:-2289901 | MS.gene24295:intron |
TTGCGGACTAGTAAAGAATT+TGG | 0.267641 | 1.1:-2292194 | MS.gene24295:CDS |
CCATACCTCAGATAAATATA+TGG | 0.276549 | 1.1:+2298078 | None:intergenic |
GACAGATAAAATTAAGAAAA+TGG | 0.276563 | 1.1:-2293497 | MS.gene24295:CDS |
AGGTACCAGCTTTCAACTTA+TGG | 0.276964 | 1.1:+2279487 | None:intergenic |
AATGGATGCAATTCTAAATA+AGG | 0.278220 | 1.1:-2294221 | MS.gene24295:CDS |
TTGCGGAGAGCTTGTCTAAT+TGG | 0.289695 | 1.1:-2290668 | MS.gene24295:CDS |
TCATGTGGTAAATTTCATTA+TGG | 0.318497 | 1.1:-2284503 | MS.gene24295:CDS |
CTGTAGGCTGTCTAGTCATC+AGG | 0.319180 | 1.1:+2281726 | None:intergenic |
TCTAGGGCCGCTTACTTTCC+TGG | 0.323783 | 1.1:+2292497 | None:intergenic |
CAAACTCCTAAGATAGTAAA+AGG | 0.327644 | 1.1:+2289570 | None:intergenic |
TCGGCCGAAATGTATATATC+TGG | 0.333757 | 1.1:-2294263 | MS.gene24295:CDS |
CTACAACTAACTTGCCTGAT+AGG | 0.333997 | 1.1:-2287158 | MS.gene24295:intron |
TTTAATTTCTGGTAGTATAT+TGG | 0.344466 | 1.1:+2282077 | None:intergenic |
CAAGAAATTGTACAATTGAT+TGG | 0.346455 | 1.1:-2295680 | MS.gene24295:CDS |
GTGGTTTGACTCTTGTCATT+TGG | 0.349163 | 1.1:+2292532 | None:intergenic |
AAATGTTAAACGAACCTATC+AGG | 0.353953 | 1.1:+2287144 | None:intergenic |
TCATCTCTTGATCGAGGCTT+TGG | 0.354559 | 1.1:-2288135 | MS.gene24295:CDS |
CAATGATATCTCTCTTGGTT+TGG | 0.356316 | 1.1:-2292731 | MS.gene24295:CDS |
AGGATTGGTGAAGCAACATT+TGG | 0.357035 | 1.1:-2298178 | MS.gene24295:CDS |
TGCATGCAAACTCTTGATTC+AGG | 0.362458 | 1.1:-2279415 | None:intergenic |
GAGGTGTCTCCAGCTCTATT+TGG | 0.364784 | 1.1:+2287934 | None:intergenic |
CAACAGCTCCGCAACATAAT+AGG | 0.364918 | 1.1:+2296925 | None:intergenic |
CAGTGATTCTTATGAAGTTC+AGG | 0.374944 | 1.1:-2280491 | MS.gene24295:intron |
AAATTCAATAAATCTATAGA+AGG | 0.375466 | 1.1:-2287033 | MS.gene24295:CDS |
CAGCTGCCATGTTAGAAAAC+CGG | 0.379815 | 1.1:+2294668 | None:intergenic |
TTATCATTTATAAGTTCTTT+GGG | 0.380340 | 1.1:-2292555 | MS.gene24295:CDS |
GATAAGTGTTTCTGGGAGAT+TGG | 0.380730 | 1.1:+2289517 | None:intergenic |
AATTTATTCTTCGTATCAAC+TGG | 0.385227 | 1.1:+2287183 | None:intergenic |
TCTTTCTATCCAGTGGATAT+CGG | 0.385403 | 1.1:-2287068 | MS.gene24295:intron |
TCCATTCTTACAAGATGAAC+AGG | 0.389454 | 1.1:+2279467 | None:intergenic |
TGAAACATACCAGGGAAATC+AGG | 0.395884 | 1.1:+2292131 | None:intergenic |
GTCTAGTCATCAGGGTCTTA+GGG | 0.397248 | 1.1:+2281735 | None:intergenic |
CTATAGATTGCTTTATATGA+AGG | 0.398166 | 1.1:-2289630 | MS.gene24295:intron |
ATGTCAAACTTAGCCTTGTT+CGG | 0.400793 | 1.1:+2293451 | None:intergenic |
GCTTTCATTACAACCATAAG+AGG | 0.404387 | 1.1:+2295722 | None:intergenic |
TTCTAACATGGCAGCTGAAA+AGG | 0.405727 | 1.1:-2294662 | MS.gene24295:intron |
AGTAGTTCTTTACAATGATA+AGG | 0.406416 | 1.1:-2286995 | MS.gene24295:CDS |
AGTCCGCAATCTTCACCTTC+AGG | 0.407583 | 1.1:+2292208 | None:intergenic |
AACAAGCGCTTGGAGTTATC+TGG | 0.407907 | 1.1:-2293654 | MS.gene24295:CDS |
TGTGGAGCGTGTGGGTTGTT+AGG | 0.408812 | 1.1:-2279519 | MS.gene24295:CDS |
ACAGCCAGATATATACATTT+CGG | 0.420426 | 1.1:+2294259 | None:intergenic |
GGCGAGTGTCCCCTCGATCC+TGG | 0.422010 | 1.1:-2296770 | MS.gene24295:CDS |
GGAAAGATGATAGAGCTTCT+TGG | 0.422262 | 1.1:-2284542 | MS.gene24295:CDS |
ACCTGTTCATCTTGTAAGAA+TGG | 0.424245 | 1.1:-2279468 | MS.gene24295:CDS |
ATGTCAATTACCTCAATAGA+TGG | 0.427719 | 1.1:+2295626 | None:intergenic |
TTCCTGGACTTCTCAAACTG+TGG | 0.433302 | 1.1:+2292513 | None:intergenic |
GTCGTTGCATAGTTATGAAA+AGG | 0.437898 | 1.1:-2288113 | MS.gene24295:intron |
TGTATCAATGATATCTCTCT+TGG | 0.438966 | 1.1:-2292736 | MS.gene24295:CDS |
TAGAGCTTTGCAGCCTAGCC+AGG | 0.441570 | 1.1:-2292478 | MS.gene24295:intron |
TGGGAGATTGGTTATGATGA+GGG | 0.444575 | 1.1:+2289529 | None:intergenic |
TCTACTTATGCCATCTATTG+AGG | 0.445335 | 1.1:-2295636 | MS.gene24295:intron |
AGGTCTACGAGTTGGAGAAA+TGG | 0.449773 | 1.1:-2280575 | MS.gene24295:CDS |
ATCTCCCAGAAACACTTATC+AGG | 0.454819 | 1.1:-2289514 | MS.gene24295:intron |
TGTGTTTACTTGGCTTCTGA+TGG | 0.455837 | 1.1:-2289981 | MS.gene24295:CDS |
TTTCTAGCTTTCCCTTCTGT+AGG | 0.456586 | 1.1:+2281710 | None:intergenic |
TTACCATCCTTCATTATTGA+CGG | 0.462008 | 1.1:+2297457 | None:intergenic |
GAGCTTCTTGGAGGGAAAGC+AGG | 0.464015 | 1.1:-2284530 | MS.gene24295:CDS |
ATCAAGAGTTTGCATGCATA+TGG | 0.465804 | 1.1:+2279420 | None:intergenic |
TGAGGATTCATAATCAGATC+TGG | 0.467678 | 1.1:+2286727 | None:intergenic |
TTTAAAGACTTCTTACGTAA+AGG | 0.469841 | 1.1:-2289785 | MS.gene24295:CDS |
AATCAAGGTACTCCAATGCT+TGG | 0.471999 | 1.1:+2295195 | None:intergenic |
GATTGGTTATGATGAGGGTA+TGG | 0.474686 | 1.1:+2289534 | None:intergenic |
TGTTCAATGTAGTGTGCAAT+GGG | 0.476032 | 1.1:-2289384 | MS.gene24295:intron |
GGACAGCTTACTTTATCTAC+TGG | 0.476036 | 1.1:-2288366 | MS.gene24295:CDS |
TATTCAATATCAACAGTTAT+CGG | 0.476505 | 1.1:+2297150 | None:intergenic |
AAGATGCATGCTCGTGGTAG+TGG | 0.477247 | 1.1:-2281758 | MS.gene24295:CDS |
CATGCTTCCGATATTAACTT+CGG | 0.480069 | 1.1:+2296948 | None:intergenic |
AGCTGCCATGTTAGAAAACC+GGG | 0.480191 | 1.1:+2294669 | None:intergenic |
CTGACAAGGTTGAAACCATA+AGG | 0.481373 | 1.1:-2284451 | MS.gene24295:intron |
CCGCAGCCCGAAGTTAATAT+CGG | 0.483062 | 1.1:-2296955 | MS.gene24295:intron |
TGGCTAGGCTGCAAAGCTCT+AGG | 0.483789 | 1.1:+2292480 | None:intergenic |
TAGGTTGGATACGATAAGCT+TGG | 0.483994 | 1.1:-2288234 | MS.gene24295:CDS |
ATGGTTGTAATGAAAGCTAT+GGG | 0.484883 | 1.1:-2295716 | MS.gene24295:CDS |
CTGAACTTCATAAGAATCAC+TGG | 0.486106 | 1.1:+2280492 | None:intergenic |
TGTTATGATGAGACGCATAA+TGG | 0.487425 | 1.1:-2294239 | MS.gene24295:CDS |
CATACCTCAGATAAATATAT+GGG | 0.487479 | 1.1:+2298079 | None:intergenic |
CTGGGAGATTGGTTATGATG+AGG | 0.488676 | 1.1:+2289528 | None:intergenic |
CTCAGGCCTCCGAGTGTGAC+GGG | 0.489424 | 1.1:+2286945 | None:intergenic |
CATGGGCAGAAAGGTGTTTG+TGG | 0.491253 | 1.1:-2286799 | MS.gene24295:CDS |
ATCAAGGTACTCCAATGCTT+GGG | 0.493087 | 1.1:+2295196 | None:intergenic |
ACTATCTTAGGAGTTTGTGC+GGG | 0.493188 | 1.1:-2289564 | MS.gene24295:CDS |
GAAACATACCAGGGAAATCA+GGG | 0.494674 | 1.1:+2292132 | None:intergenic |
AGGTTCAGGATGCACAAGCC+TGG | 0.495123 | 1.1:-2292673 | MS.gene24295:CDS |
TCTAGATACTTGATGATGAC+GGG | 0.495878 | 1.1:-2287263 | MS.gene24295:intron |
ATCTATAGAAGGGGAAGTAG+TGG | 0.500748 | 1.1:-2287022 | MS.gene24295:CDS |
AACCACAGTTTGAGAAGTCC+AGG | 0.501105 | 1.1:-2292515 | MS.gene24295:CDS |
AGCTTCTTGGAGGGAAAGCA+GGG | 0.501392 | 1.1:-2284529 | MS.gene24295:CDS |
ATCTACTGGTTTATCCTCAA+CGG | 0.503620 | 1.1:-2288352 | MS.gene24295:CDS |
ATAACCTGATAAGTGTTTCT+GGG | 0.504980 | 1.1:+2289510 | None:intergenic |
AGACTTCTTACGTAAAGGCT+TGG | 0.507769 | 1.1:-2289780 | MS.gene24295:CDS |
CAATGAGGAAAACAATGCTT+TGG | 0.508287 | 1.1:-2289741 | MS.gene24295:intron |
TTCAACTCACAGGATTATGT+AGG | 0.508792 | 1.1:-2293678 | MS.gene24295:intron |
TATGGTTGTAATGAAAGCTA+TGG | 0.509474 | 1.1:-2295717 | MS.gene24295:CDS |
GAAAACACGGAACATCTCTC+TGG | 0.509553 | 1.1:-2290901 | MS.gene24295:CDS |
TTGTGGAACAATTGTCCAGC+AGG | 0.511272 | 1.1:-2286782 | MS.gene24295:CDS |
ACAGAAGGGAAAGCTAGAAA+TGG | 0.512396 | 1.1:-2281707 | MS.gene24295:CDS |
TCAGATAGTCGGCATGTCTG+TGG | 0.514270 | 1.1:+2297418 | None:intergenic |
GTTAGTTACCTTGAGGAACT+CGG | 0.514739 | 1.1:+2298316 | None:intergenic |
GACAACAAAATCAATTGAGC+TGG | 0.514877 | 1.1:-2288321 | MS.gene24295:intron |
ACACAGGTCTGTGGAGCGTG+TGG | 0.514968 | 1.1:-2279528 | MS.gene24295:intron |
GATGACGGGATTGCTGCTCC+TGG | 0.515254 | 1.1:-2287249 | MS.gene24295:CDS |
TGTTGATATTGAATACACTC+TGG | 0.515980 | 1.1:-2297142 | MS.gene24295:CDS |
CCTCAGGCCTCCGAGTGTGA+CGG | 0.516401 | 1.1:+2286944 | None:intergenic |
TGCAATGGGAAAGCAAGCTA+TGG | 0.517305 | 1.1:-2289370 | MS.gene24295:CDS |
GATAAATTCAGTAGCAGACA+TGG | 0.518411 | 1.1:-2286817 | MS.gene24295:CDS |
TTAAGAAAATGGCAGACGAT+TGG | 0.518466 | 1.1:-2293486 | MS.gene24295:CDS |
AAAATGGAAAGTCTTCCTGC+TGG | 0.521267 | 1.1:+2286767 | None:intergenic |
GAAAATGGCAGACGATTGGT+TGG | 0.522174 | 1.1:-2293482 | MS.gene24295:CDS |
GGCTAGGCTGCAAAGCTCTA+GGG | 0.522461 | 1.1:+2292481 | None:intergenic |
ACATGTGCACATCAGGCAAA+AGG | 0.523474 | 1.1:-2294694 | MS.gene24295:intron |
CAGATAGTCGGCATGTCTGT+GGG | 0.523758 | 1.1:+2297419 | None:intergenic |
GAAGATGAGCTTGCAAAACT+TGG | 0.523898 | 1.1:-2296880 | MS.gene24295:intron |
TGGTAAACCGTCAATAATGA+AGG | 0.524344 | 1.1:-2297464 | MS.gene24295:CDS |
AATTCAATAAATCTATAGAA+GGG | 0.525935 | 1.1:-2287032 | MS.gene24295:CDS |
CGTGATTGCTTAATTGCATA+CGG | 0.526176 | 1.1:-2280550 | MS.gene24295:CDS |
GTCAAACAAAAGTATCTGAA+TGG | 0.527638 | 1.1:-2287979 | MS.gene24295:CDS |
ATCTAGATACTTGATGATGA+CGG | 0.528699 | 1.1:-2287264 | MS.gene24295:intron |
ATACTACGTCCAAATAGAGC+TGG | 0.533912 | 1.1:-2287943 | MS.gene24295:CDS |
TACACAACCTGTGTCACTCC+AGG | 0.535701 | 1.1:+2292655 | None:intergenic |
ATATCTCTCTTGGTTTGGAA+AGG | 0.538802 | 1.1:-2292726 | MS.gene24295:CDS |
TTCACCTTCAGGAGTATCAC+AGG | 0.539163 | 1.1:+2292219 | None:intergenic |
AGATTGCAGCTTACCTGGCT+AGG | 0.540800 | 1.1:+2292465 | None:intergenic |
TGAATCCTCATGGGTTTCCA+AGG | 0.543421 | 1.1:-2286714 | MS.gene24295:intron |
GATCTGATTATGAATCCTCA+TGG | 0.543986 | 1.1:-2286724 | MS.gene24295:CDS |
TACTATCTTAGGAGTTTGTG+CGG | 0.545246 | 1.1:-2289565 | MS.gene24295:CDS |
TACAACCATAAGTTGAAAGC+TGG | 0.545299 | 1.1:-2279492 | MS.gene24295:CDS |
AGTAGCAGACATGGGCAGAA+AGG | 0.545438 | 1.1:-2286808 | MS.gene24295:CDS |
TTGTTCAATGTAGTGTGCAA+TGG | 0.545834 | 1.1:-2289385 | MS.gene24295:intron |
GGCATCAGTCGAATGACAGT+TGG | 0.546259 | 1.1:-2284563 | MS.gene24295:intron |
TCCTCTTGTCATTGCTGACA+AGG | 0.546261 | 1.1:-2289943 | MS.gene24295:CDS |
ATGATCGTGTTGAAGCTACT+AGG | 0.546532 | 1.1:-2298104 | MS.gene24295:CDS |
CACATCAGGCAAAAGGTCCC+CGG | 0.547707 | 1.1:-2294687 | MS.gene24295:intron |
TTATGTAGGGAACAAGCGCT+TGG | 0.551211 | 1.1:-2293664 | MS.gene24295:CDS |
ATTTACACAAGCCCAAGCAT+TGG | 0.551643 | 1.1:-2295207 | MS.gene24295:CDS |
TTAGTTACCTTGAGGAACTC+GGG | 0.553710 | 1.1:+2298317 | None:intergenic |
AGACACCTCGGGAAATATGC+AGG | 0.553757 | 1.1:-2287920 | MS.gene24295:intron |
AAGATGATAGAGCTTCTTGG+AGG | 0.555446 | 1.1:-2284539 | MS.gene24295:CDS |
GGATACGATAAGCTTGGAGC+AGG | 0.558146 | 1.1:-2288228 | MS.gene24295:CDS |
TGATGGAAAAGGAGAAGATG+TGG | 0.559156 | 1.1:-2295878 | MS.gene24295:CDS |
TGTAGGCTGTCTAGTCATCA+GGG | 0.559420 | 1.1:+2281727 | None:intergenic |
AATAGAGCTGGAGACACCTC+GGG | 0.560166 | 1.1:-2287931 | MS.gene24295:CDS |
TTGATTATAAAATATCCTCC+AGG | 0.560380 | 1.1:+2296752 | None:intergenic |
AAAATATCCTCCAGGATCGA+GGG | 0.561023 | 1.1:+2296760 | None:intergenic |
AAAATGACAAGAAAGGAATC+GGG | 0.561316 | 1.1:+2290862 | None:intergenic |
CCCTTGTCAGCAATGACAAG+AGG | 0.564644 | 1.1:+2289942 | None:intergenic |
GCAATGGGAAAGCAAGCTAT+GGG | 0.566668 | 1.1:-2289369 | MS.gene24295:CDS |
CTACAGTGGTTATGATATTG+AGG | 0.566807 | 1.1:-2288178 | MS.gene24295:CDS |
ATGCTTCCGATATTAACTTC+GGG | 0.569242 | 1.1:+2296949 | None:intergenic |
GTTGATATTGAATACACTCT+GGG | 0.569759 | 1.1:-2297141 | MS.gene24295:CDS |
GTTTACTTGGCTTCTGATGG+TGG | 0.571419 | 1.1:-2289978 | MS.gene24295:CDS |
AAGAAGTGGTCATGCTGACA+AGG | 0.575298 | 1.1:-2284465 | MS.gene24295:CDS |
TCATGTCACTACTGATGAAG+AGG | 0.576837 | 1.1:-2292161 | MS.gene24295:CDS |
TCAACTCACAGGATTATGTA+GGG | 0.577562 | 1.1:-2293677 | MS.gene24295:intron |
TGTCTATGTCAATGAAAAGC+AGG | 0.577589 | 1.1:-2290633 | MS.gene24295:intron |
ATCTGATTATGAATCCTCAT+GGG | 0.577851 | 1.1:-2286723 | MS.gene24295:CDS |
ATGACTAGACAGCCTACAGA+AGG | 0.581221 | 1.1:-2281722 | MS.gene24295:CDS |
TGTCCCTGTGATACTCCTGA+AGG | 0.585849 | 1.1:-2292223 | MS.gene24295:CDS |
TAAAATATCCTCCAGGATCG+AGG | 0.588272 | 1.1:+2296759 | None:intergenic |
AGTGAAACTCTCGTGAAACA+TGG | 0.588483 | 1.1:-2284354 | MS.gene24295:CDS |
CTACTGCAATGAGGAAGTTG+CGG | 0.588745 | 1.1:-2290685 | MS.gene24295:CDS |
AATTCTAAATAAGGATGCAA+TGG | 0.592120 | 1.1:-2294212 | MS.gene24295:CDS |
AAATTCTTACCCGTCACACT+CGG | 0.597536 | 1.1:-2286954 | MS.gene24295:CDS |
GCACAAGCCTGGAGTGACAC+AGG | 0.598152 | 1.1:-2292662 | MS.gene24295:intron |
TTGGAAAGGACTCTATCGAC+GGG | 0.599936 | 1.1:-2292712 | MS.gene24295:CDS |
AAATAGAGCTGGAGACACCT+CGG | 0.604153 | 1.1:-2287932 | MS.gene24295:CDS |
ACTTATTCCCGAGTTCCTCA+AGG | 0.604668 | 1.1:-2298324 | MS.gene24295:intron |
ATTCAATAAATCTATAGAAG+GGG | 0.607329 | 1.1:-2287031 | MS.gene24295:CDS |
AAACCGTCAATAATGAAGGA+TGG | 0.607542 | 1.1:-2297460 | MS.gene24295:CDS |
AGATGATAGAGCTTCTTGGA+GGG | 0.609479 | 1.1:-2284538 | MS.gene24295:CDS |
AAAGTAAGCTGTCCATCCGT+CGG | 0.611428 | 1.1:+2288375 | None:intergenic |
CCTCTTGTCATTGCTGACAA+GGG | 0.611860 | 1.1:-2289942 | MS.gene24295:CDS |
CACAGGTCTGTGGAGCGTGT+GGG | 0.615516 | 1.1:-2279527 | MS.gene24295:intron |
TTTGGAAAGGACTCTATCGA+CGG | 0.617261 | 1.1:-2292713 | MS.gene24295:CDS |
CTACCAGAAATTAAAACACA+TGG | 0.617916 | 1.1:-2282069 | MS.gene24295:intron |
GAAGGGAAAGCTAGAAATGG+AGG | 0.618532 | 1.1:-2281704 | MS.gene24295:intron |
GGGAAAGCAGGGGTTTCATG+TGG | 0.619087 | 1.1:-2284518 | MS.gene24295:CDS |
TAAGGATGCAATGGATGACA+AGG | 0.622249 | 1.1:-2294203 | MS.gene24295:intron |
TGGCAAGCATAGGAGACCAC+AGG | 0.623814 | 1.1:-2290824 | MS.gene24295:intron |
CTATCTTAGGAGTTTGTGCG+GGG | 0.625949 | 1.1:-2289563 | MS.gene24295:CDS |
TTGTCAACAGCAGAATTCAC+AGG | 0.626290 | 1.1:+2298353 | None:intergenic |
GTTCTATCATTGGCAAGCAT+AGG | 0.627156 | 1.1:-2290834 | MS.gene24295:CDS |
AACAAGTCATCTCTTGATCG+AGG | 0.627507 | 1.1:-2288141 | MS.gene24295:CDS |
CTCGATAAGATGCATGCTCG+TGG | 0.628312 | 1.1:-2281764 | MS.gene24295:CDS |
AAAGCAGATTTCTAACGTGA+AGG | 0.631729 | 1.1:-2279445 | MS.gene24295:CDS |
CCGTCACACTCGGAGGCCTG+AGG | 0.632543 | 1.1:-2286944 | MS.gene24295:intron |
GTTGGATAAGAAGCCGAACA+AGG | 0.632605 | 1.1:-2293464 | MS.gene24295:CDS |
TGTAATGAAAGCTATGGGGA+TGG | 0.636561 | 1.1:-2295711 | MS.gene24295:CDS |
TATAATCAAAGGGAACGAGA+AGG | 0.637087 | 1.1:-2296738 | MS.gene24295:intron |
TGTCACTACTGATGAAGAGG+AGG | 0.638150 | 1.1:-2292158 | MS.gene24295:CDS |
AACATACCAGGGAAATCAGG+GGG | 0.638830 | 1.1:+2292134 | None:intergenic |
GAAGCATGCCTATTATGTTG+CGG | 0.639708 | 1.1:-2296933 | MS.gene24295:CDS |
AAACATGGCTTCAGTTACAG+TGG | 0.645725 | 1.1:-2284339 | MS.gene24295:CDS |
ATAACCTAAGAAAAGAAACA+AGG | 0.646355 | 1.1:-2297110 | MS.gene24295:CDS |
CCTACGTTCGATCAGATAGT+CGG | 0.651130 | 1.1:+2297407 | None:intergenic |
AACATGGCTTCAGTTACAGT+GGG | 0.651201 | 1.1:-2284338 | MS.gene24295:CDS |
ACTCCTGAAGGTGAAGATTG+CGG | 0.653104 | 1.1:-2292211 | MS.gene24295:CDS |
GGGGAATATAGCATATAACC+AGG | 0.656646 | 1.1:-2289349 | MS.gene24295:intron |
GTTGTCAGCAAAGGCCGTTG+AGG | 0.657654 | 1.1:+2288338 | None:intergenic |
GGCACCCATATATTTATCTG+AGG | 0.657889 | 1.1:-2298083 | MS.gene24295:intron |
TAACCTAAGAAAAGAAACAA+GGG | 0.661237 | 1.1:-2297109 | MS.gene24295:intron |
AAACATACCAGGGAAATCAG+GGG | 0.661598 | 1.1:+2292133 | None:intergenic |
AAATATCCTCCAGGATCGAG+GGG | 0.671157 | 1.1:+2296761 | None:intergenic |
GTAGCTGTAATGAGCTACAG+TGG | 0.671807 | 1.1:-2288192 | MS.gene24295:CDS |
TTCTTACCCGTCACACTCGG+AGG | 0.674877 | 1.1:-2286951 | MS.gene24295:CDS |
TATCACCTGCATATTTCCCG+AGG | 0.675031 | 1.1:+2287915 | None:intergenic |
TGACTAGACAGCCTACAGAA+GGG | 0.676482 | 1.1:-2281721 | MS.gene24295:CDS |
GAGAAGTCCAGGAAAGTAAG+CGG | 0.679479 | 1.1:-2292504 | MS.gene24295:CDS |
TATTACCTTGGAAACCCATG+AGG | 0.679988 | 1.1:+2286709 | None:intergenic |
GTAGCTCATTACAGCTACAG+TGG | 0.685449 | 1.1:+2288197 | None:intergenic |
ATAAATTCAGTAGCAGACAT+GGG | 0.686101 | 1.1:-2286816 | MS.gene24295:CDS |
TCACCTTCAGGAGTATCACA+GGG | 0.711107 | 1.1:+2292220 | None:intergenic |
ACATACCAGGGAAATCAGGG+GGG | 0.714434 | 1.1:+2292135 | None:intergenic |
TGAGTATCTTGATGTCAATG+AGG | 0.718554 | 1.1:-2289756 | MS.gene24295:CDS |
GCTTCTTGGAGGGAAAGCAG+GGG | 0.723235 | 1.1:-2284528 | MS.gene24295:CDS |
GAGTGTCCCCTCGATCCTGG+AGG | 0.724844 | 1.1:-2296767 | MS.gene24295:CDS |
CAATGGGAAAGCAAGCTATG+GGG | 0.735564 | 1.1:-2289368 | MS.gene24295:CDS |
GCTGCCATGTTAGAAAACCG+GGG | 0.755143 | 1.1:+2294670 | None:intergenic |
ATAAGTAGAAAACTGTAACG+AGG | 0.757109 | 1.1:+2295650 | None:intergenic |
TGGTTGTAATGAAAGCTATG+GGG | 0.784001 | 1.1:-2295715 | MS.gene24295:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 2279416 | 2298399 | 2279416 | ID=MS.gene24295 |
chr1.1 | mRNA | 2279416 | 2298399 | 2279416 | ID=MS.gene24295.t1;Parent=MS.gene24295 |
chr1.1 | exon | 2298325 | 2298399 | 2298325 | ID=MS.gene24295.t1.exon1;Parent=MS.gene24295.t1 |
chr1.1 | CDS | 2298325 | 2298399 | 2298325 | ID=cds.MS.gene24295.t1;Parent=MS.gene24295.t1 |
chr1.1 | exon | 2298084 | 2298205 | 2298084 | ID=MS.gene24295.t1.exon2;Parent=MS.gene24295.t1 |
chr1.1 | CDS | 2298084 | 2298205 | 2298084 | ID=cds.MS.gene24295.t1;Parent=MS.gene24295.t1 |
chr1.1 | exon | 2297412 | 2297504 | 2297412 | ID=MS.gene24295.t1.exon3;Parent=MS.gene24295.t1 |
chr1.1 | CDS | 2297412 | 2297504 | 2297412 | ID=cds.MS.gene24295.t1;Parent=MS.gene24295.t1 |
chr1.1 | exon | 2297110 | 2297182 | 2297110 | ID=MS.gene24295.t1.exon4;Parent=MS.gene24295.t1 |
chr1.1 | CDS | 2297110 | 2297182 | 2297110 | ID=cds.MS.gene24295.t1;Parent=MS.gene24295.t1 |
chr1.1 | exon | 2296881 | 2296971 | 2296881 | ID=MS.gene24295.t1.exon5;Parent=MS.gene24295.t1 |
chr1.1 | CDS | 2296881 | 2296971 | 2296881 | ID=cds.MS.gene24295.t1;Parent=MS.gene24295.t1 |
chr1.1 | exon | 2296739 | 2296791 | 2296739 | ID=MS.gene24295.t1.exon6;Parent=MS.gene24295.t1 |
chr1.1 | CDS | 2296739 | 2296791 | 2296739 | ID=cds.MS.gene24295.t1;Parent=MS.gene24295.t1 |
chr1.1 | exon | 2296321 | 2296385 | 2296321 | ID=MS.gene24295.t1.exon7;Parent=MS.gene24295.t1 |
chr1.1 | CDS | 2296321 | 2296385 | 2296321 | ID=cds.MS.gene24295.t1;Parent=MS.gene24295.t1 |
chr1.1 | exon | 2295851 | 2295956 | 2295851 | ID=MS.gene24295.t1.exon8;Parent=MS.gene24295.t1 |
chr1.1 | CDS | 2295851 | 2295956 | 2295851 | ID=cds.MS.gene24295.t1;Parent=MS.gene24295.t1 |
chr1.1 | exon | 2295637 | 2295747 | 2295637 | ID=MS.gene24295.t1.exon9;Parent=MS.gene24295.t1 |
chr1.1 | CDS | 2295637 | 2295747 | 2295637 | ID=cds.MS.gene24295.t1;Parent=MS.gene24295.t1 |
chr1.1 | exon | 2295190 | 2295249 | 2295190 | ID=MS.gene24295.t1.exon10;Parent=MS.gene24295.t1 |
chr1.1 | CDS | 2295190 | 2295249 | 2295190 | ID=cds.MS.gene24295.t1;Parent=MS.gene24295.t1 |
chr1.1 | exon | 2294663 | 2294701 | 2294663 | ID=MS.gene24295.t1.exon11;Parent=MS.gene24295.t1 |
chr1.1 | CDS | 2294663 | 2294701 | 2294663 | ID=cds.MS.gene24295.t1;Parent=MS.gene24295.t1 |
chr1.1 | exon | 2294469 | 2294519 | 2294469 | ID=MS.gene24295.t1.exon12;Parent=MS.gene24295.t1 |
chr1.1 | CDS | 2294469 | 2294519 | 2294469 | ID=cds.MS.gene24295.t1;Parent=MS.gene24295.t1 |
chr1.1 | exon | 2294204 | 2294302 | 2294204 | ID=MS.gene24295.t1.exon13;Parent=MS.gene24295.t1 |
chr1.1 | CDS | 2294204 | 2294302 | 2294204 | ID=cds.MS.gene24295.t1;Parent=MS.gene24295.t1 |
chr1.1 | exon | 2293629 | 2293688 | 2293629 | ID=MS.gene24295.t1.exon14;Parent=MS.gene24295.t1 |
chr1.1 | CDS | 2293629 | 2293688 | 2293629 | ID=cds.MS.gene24295.t1;Parent=MS.gene24295.t1 |
chr1.1 | exon | 2293444 | 2293536 | 2293444 | ID=MS.gene24295.t1.exon15;Parent=MS.gene24295.t1 |
chr1.1 | CDS | 2293444 | 2293536 | 2293444 | ID=cds.MS.gene24295.t1;Parent=MS.gene24295.t1 |
chr1.1 | exon | 2292663 | 2292773 | 2292663 | ID=MS.gene24295.t1.exon16;Parent=MS.gene24295.t1 |
chr1.1 | CDS | 2292663 | 2292773 | 2292663 | ID=cds.MS.gene24295.t1;Parent=MS.gene24295.t1 |
chr1.1 | exon | 2292479 | 2292589 | 2292479 | ID=MS.gene24295.t1.exon17;Parent=MS.gene24295.t1 |
chr1.1 | CDS | 2292479 | 2292589 | 2292479 | ID=cds.MS.gene24295.t1;Parent=MS.gene24295.t1 |
chr1.1 | exon | 2292141 | 2292257 | 2292141 | ID=MS.gene24295.t1.exon18;Parent=MS.gene24295.t1 |
chr1.1 | CDS | 2292141 | 2292257 | 2292141 | ID=cds.MS.gene24295.t1;Parent=MS.gene24295.t1 |
chr1.1 | exon | 2290825 | 2290941 | 2290825 | ID=MS.gene24295.t1.exon19;Parent=MS.gene24295.t1 |
chr1.1 | CDS | 2290825 | 2290941 | 2290825 | ID=cds.MS.gene24295.t1;Parent=MS.gene24295.t1 |
chr1.1 | exon | 2290634 | 2290714 | 2290634 | ID=MS.gene24295.t1.exon20;Parent=MS.gene24295.t1 |
chr1.1 | CDS | 2290634 | 2290714 | 2290634 | ID=cds.MS.gene24295.t1;Parent=MS.gene24295.t1 |
chr1.1 | exon | 2289902 | 2290006 | 2289902 | ID=MS.gene24295.t1.exon21;Parent=MS.gene24295.t1 |
chr1.1 | CDS | 2289902 | 2290006 | 2289902 | ID=cds.MS.gene24295.t1;Parent=MS.gene24295.t1 |
chr1.1 | exon | 2289742 | 2289822 | 2289742 | ID=MS.gene24295.t1.exon22;Parent=MS.gene24295.t1 |
chr1.1 | CDS | 2289742 | 2289822 | 2289742 | ID=cds.MS.gene24295.t1;Parent=MS.gene24295.t1 |
chr1.1 | exon | 2289515 | 2289646 | 2289515 | ID=MS.gene24295.t1.exon23;Parent=MS.gene24295.t1 |
chr1.1 | CDS | 2289515 | 2289646 | 2289515 | ID=cds.MS.gene24295.t1;Parent=MS.gene24295.t1 |
chr1.1 | exon | 2289350 | 2289394 | 2289350 | ID=MS.gene24295.t1.exon24;Parent=MS.gene24295.t1 |
chr1.1 | CDS | 2289350 | 2289394 | 2289350 | ID=cds.MS.gene24295.t1;Parent=MS.gene24295.t1 |
chr1.1 | exon | 2288322 | 2288399 | 2288322 | ID=MS.gene24295.t1.exon25;Parent=MS.gene24295.t1 |
chr1.1 | CDS | 2288322 | 2288399 | 2288322 | ID=cds.MS.gene24295.t1;Parent=MS.gene24295.t1 |
chr1.1 | exon | 2288114 | 2288253 | 2288114 | ID=MS.gene24295.t1.exon26;Parent=MS.gene24295.t1 |
chr1.1 | CDS | 2288114 | 2288253 | 2288114 | ID=cds.MS.gene24295.t1;Parent=MS.gene24295.t1 |
chr1.1 | exon | 2287921 | 2288011 | 2287921 | ID=MS.gene24295.t1.exon27;Parent=MS.gene24295.t1 |
chr1.1 | CDS | 2287921 | 2288011 | 2287921 | ID=cds.MS.gene24295.t1;Parent=MS.gene24295.t1 |
chr1.1 | exon | 2287159 | 2287280 | 2287159 | ID=MS.gene24295.t1.exon28;Parent=MS.gene24295.t1 |
chr1.1 | CDS | 2287159 | 2287280 | 2287159 | ID=cds.MS.gene24295.t1;Parent=MS.gene24295.t1 |
chr1.1 | exon | 2286945 | 2287077 | 2286945 | ID=MS.gene24295.t1.exon29;Parent=MS.gene24295.t1 |
chr1.1 | CDS | 2286945 | 2287077 | 2286945 | ID=cds.MS.gene24295.t1;Parent=MS.gene24295.t1 |
chr1.1 | exon | 2286715 | 2286845 | 2286715 | ID=MS.gene24295.t1.exon30;Parent=MS.gene24295.t1 |
chr1.1 | CDS | 2286715 | 2286845 | 2286715 | ID=cds.MS.gene24295.t1;Parent=MS.gene24295.t1 |
chr1.1 | exon | 2284452 | 2284577 | 2284452 | ID=MS.gene24295.t1.exon31;Parent=MS.gene24295.t1 |
chr1.1 | CDS | 2284452 | 2284577 | 2284452 | ID=cds.MS.gene24295.t1;Parent=MS.gene24295.t1 |
chr1.1 | exon | 2284319 | 2284374 | 2284319 | ID=MS.gene24295.t1.exon32;Parent=MS.gene24295.t1 |
chr1.1 | CDS | 2284319 | 2284374 | 2284319 | ID=cds.MS.gene24295.t1;Parent=MS.gene24295.t1 |
chr1.1 | exon | 2282070 | 2282140 | 2282070 | ID=MS.gene24295.t1.exon33;Parent=MS.gene24295.t1 |
chr1.1 | CDS | 2282070 | 2282140 | 2282070 | ID=cds.MS.gene24295.t1;Parent=MS.gene24295.t1 |
chr1.1 | exon | 2281705 | 2281789 | 2281705 | ID=MS.gene24295.t1.exon34;Parent=MS.gene24295.t1 |
chr1.1 | CDS | 2281705 | 2281789 | 2281705 | ID=cds.MS.gene24295.t1;Parent=MS.gene24295.t1 |
chr1.1 | exon | 2280492 | 2280595 | 2280492 | ID=MS.gene24295.t1.exon35;Parent=MS.gene24295.t1 |
chr1.1 | CDS | 2280492 | 2280595 | 2280492 | ID=cds.MS.gene24295.t1;Parent=MS.gene24295.t1 |
chr1.1 | exon | 2279416 | 2279544 | 2279416 | ID=MS.gene24295.t1.exon36;Parent=MS.gene24295.t1 |
chr1.1 | CDS | 2279416 | 2279544 | 2279416 | ID=cds.MS.gene24295.t1;Parent=MS.gene24295.t1 |
Gene Sequence |
Protein sequence |