Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08465.t1 | KEH18521.1 | 98.8 | 1116 | 13 | 0 | 1 | 1116 | 872 | 1987 | 0.00E+00 | 2240.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08465.t1 | F4KD38 | 72.4 | 1134 | 291 | 7 | 1 | 1116 | 17 | 1146 | 0.0e+00 | 1666.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08465.t1 | A0A072TMT8 | 98.8 | 1116 | 13 | 0 | 1 | 1116 | 872 | 1987 | 0.0e+00 | 2240.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049824 | MS.gene08465 | 0.813764 | 2.17E-51 | -1.69E-46 |
MS.gene051008 | MS.gene08465 | 0.924389 | 7.53E-90 | -1.69E-46 |
MS.gene053998 | MS.gene08465 | 0.803251 | 3.81E-49 | -1.69E-46 |
MS.gene055778 | MS.gene08465 | 0.80345 | 3.47E-49 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08465.t1 | MTR_8g023445 | 98.835 | 1116 | 13 | 0 | 1 | 1116 | 872 | 1987 | 0.0 | 2304 |
MS.gene08465.t1 | MTR_1g023500 | 37.113 | 1164 | 644 | 20 | 17 | 1116 | 30 | 1169 | 0.0 | 739 |
MS.gene08465.t1 | MTR_3g105990 | 29.592 | 1176 | 691 | 32 | 23 | 1116 | 53 | 1173 | 7.27e-141 | 455 |
MS.gene08465.t1 | MTR_4g124030 | 27.341 | 1196 | 709 | 40 | 23 | 1113 | 25 | 1165 | 9.07e-107 | 362 |
MS.gene08465.t1 | MTR_1g022135 | 60.741 | 270 | 72 | 4 | 79 | 347 | 2 | 238 | 3.87e-95 | 305 |
MS.gene08465.t1 | MTR_1g022135 | 47.009 | 117 | 50 | 4 | 1010 | 1116 | 168 | 282 | 3.71e-19 | 90.1 |
MS.gene08465.t1 | MTR_0002s0510 | 22.865 | 1124 | 696 | 39 | 17 | 1067 | 44 | 1069 | 1.69e-42 | 171 |
MS.gene08465.t1 | MTR_4g051130 | 26.535 | 505 | 282 | 12 | 648 | 1067 | 498 | 998 | 2.20e-34 | 144 |
MS.gene08465.t1 | MTR_1g022125 | 76.471 | 68 | 16 | 0 | 1 | 68 | 1 | 68 | 1.80e-29 | 112 |
MS.gene08465.t1 | MTR_0189s0050 | 23.711 | 485 | 307 | 15 | 23 | 464 | 51 | 515 | 3.61e-26 | 114 |
MS.gene08465.t1 | MTR_8g023440 | 70.588 | 51 | 15 | 0 | 473 | 523 | 102 | 152 | 6.02e-16 | 77.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08465.t1 | AT5G45140 | 72.399 | 1134 | 291 | 7 | 1 | 1116 | 17 | 1146 | 0.0 | 1710 |
MS.gene08465.t1 | AT5G45140 | 72.399 | 1134 | 291 | 7 | 1 | 1116 | 17 | 1146 | 0.0 | 1710 |
MS.gene08465.t1 | AT5G45140 | 70.932 | 805 | 217 | 4 | 1 | 791 | 17 | 818 | 0.0 | 1184 |
MS.gene08465.t1 | AT4G21710 | 36.512 | 1164 | 655 | 18 | 15 | 1116 | 25 | 1166 | 0.0 | 723 |
MS.gene08465.t1 | AT3G23780 | 29.145 | 1170 | 699 | 30 | 23 | 1116 | 42 | 1157 | 4.42e-131 | 429 |
MS.gene08465.t1 | AT3G23780 | 29.145 | 1170 | 699 | 30 | 23 | 1116 | 42 | 1157 | 4.42e-131 | 429 |
MS.gene08465.t1 | AT3G18090 | 30.175 | 1087 | 651 | 28 | 90 | 1116 | 2 | 1040 | 1.56e-128 | 419 |
MS.gene08465.t1 | AT1G29940 | 27.575 | 1204 | 697 | 42 | 22 | 1113 | 15 | 1155 | 7.12e-106 | 360 |
MS.gene08465.t1 | AT3G18090 | 28.953 | 898 | 549 | 24 | 90 | 944 | 2 | 853 | 8.12e-89 | 306 |
MS.gene08465.t1 | AT3G18090 | 28.953 | 898 | 549 | 24 | 90 | 944 | 2 | 853 | 9.69e-89 | 306 |
MS.gene08465.t1 | ATCG00190 | 26.857 | 525 | 290 | 14 | 632 | 1067 | 494 | 1013 | 8.73e-35 | 144 |
Find 226 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTGTTGGCTGTCTAGTTATC+AGG | 0.188762 | 8.2:+72375274 | None:intergenic |
ATTATTACAGTGCTATCTTT+TGG | 0.195144 | 8.2:-72382794 | MS.gene08465:intron |
TGTCTAGTTATCAGGGCTTT+AGG | 0.202220 | 8.2:+72375282 | None:intergenic |
CTTCACCTGGCGAAATTATT+AGG | 0.208940 | 8.2:-72377306 | MS.gene08465:CDS |
TTTCATTATGGCAGTGCTTT+TGG | 0.218514 | 8.2:-72376171 | MS.gene08465:CDS |
GGGAAAGATTTCATTTATTC+AGG | 0.231341 | 8.2:-72376000 | MS.gene08465:intron |
GACAACCTGATATGTGTTTC+TGG | 0.238677 | 8.2:+72381460 | None:intergenic |
AAACACCAGCTTTCAACTTA+TGG | 0.248385 | 8.2:+72372677 | None:intergenic |
TCATCATATGAAAGAGTTAA+AGG | 0.266666 | 8.2:-72381836 | MS.gene08465:intron |
TATCCAATAGGTTCCTCTTA+TGG | 0.273577 | 8.2:-72389938 | MS.gene08465:intron |
TTGCGGAGAGCTTGTCTAAT+TGG | 0.276536 | 8.2:-72382559 | MS.gene08465:CDS |
GTCTAGTTATCAGGGCTTTA+GGG | 0.276835 | 8.2:+72375283 | None:intergenic |
TTTAATTACCTTGAGGAATT+CGG | 0.277234 | 8.2:+72394011 | None:intergenic |
AATGGATGCAATTCTAAATA+AGG | 0.278220 | 8.2:-72385969 | MS.gene08465:CDS |
TTGCAAGAAATGTTTCTCTT+AGG | 0.278221 | 8.2:+72386224 | None:intergenic |
CAACAACTCCGTAACATAAT+AGG | 0.290400 | 8.2:+72392662 | None:intergenic |
GGACACCTTACTTTATCTAT+TGG | 0.327063 | 8.2:-72378883 | MS.gene08465:CDS |
GTTATCCTTTATAAGTGCTT+TGG | 0.335287 | 8.2:-72383892 | MS.gene08465:CDS |
CTCTAGATACTTGATGATGA+TGG | 0.340072 | 8.2:-72377334 | MS.gene08465:intron |
TCGTGTGGTAAATTTCATTA+TGG | 0.343585 | 8.2:-72376183 | MS.gene08465:CDS |
TTTAATTTCTGGTAGTATAT+TGG | 0.344466 | 8.2:+72375617 | None:intergenic |
ATCTCAATATGAGTAGTTTC+TGG | 0.347354 | 8.2:+72381548 | None:intergenic |
TCATCTCTTGATCGAGGCTT+TGG | 0.351780 | 8.2:-72378652 | MS.gene08465:CDS |
TTGTCGACAGAGGACTTTAC+AGG | 0.352837 | 8.2:+72394048 | None:intergenic |
CGTCAACTAACTTGCCTGAT+AGG | 0.353833 | 8.2:-72377228 | MS.gene08465:intron |
TTGGCCCAAAGCACTTATAA+AGG | 0.353979 | 8.2:+72383887 | None:intergenic |
TGCATGCAAACTCTTGATTC+AGG | 0.362458 | 8.2:-72372605 | MS.gene08465:intron |
TTATCCTTTATAAGTGCTTT+GGG | 0.368604 | 8.2:-72383891 | MS.gene08465:CDS |
TTAATTACCTTGAGGAATTC+GGG | 0.372835 | 8.2:+72394012 | None:intergenic |
AGTTATCTCTCTTCTATTTG+AGG | 0.372975 | 8.2:-72384999 | MS.gene08465:intron |
GATTGATTATGATGAGGATA+TGG | 0.374305 | 8.2:+72381485 | None:intergenic |
GTGGCTGGACTCTTGTCATT+TGG | 0.377320 | 8.2:+72383868 | None:intergenic |
CAAGAAGTTGTACAGTTGAT+TGG | 0.377344 | 8.2:-72389883 | MS.gene08465:CDS |
GTTAATGAAACAAACCTATC+AGG | 0.384993 | 8.2:+72377214 | None:intergenic |
TTTCTAGCTCTCCCTTCTGT+TGG | 0.394531 | 8.2:+72375258 | None:intergenic |
AACAAACGATTGGAGTTATC+TGG | 0.398077 | 8.2:-72385025 | MS.gene08465:CDS |
TAGTGATCCGTATGAAGTTC+AGG | 0.398200 | 8.2:-72373909 | MS.gene08465:intron |
GGAAAGATGATAGAACTTCT+TGG | 0.401457 | 8.2:-72376222 | MS.gene08465:CDS |
CTGCAGAGCTTGTGGATTGT+TGG | 0.403260 | 8.2:-72372710 | MS.gene08465:CDS |
GCTTTCATTATAACCATAAG+AGG | 0.405487 | 8.2:+72389925 | None:intergenic |
TGCAGAGCTTGTGGATTGTT+GGG | 0.411675 | 8.2:-72372709 | MS.gene08465:CDS |
TGTTATGATAAGACGCATAA+TGG | 0.413829 | 8.2:-72385987 | MS.gene08465:CDS |
AGTCCACAAGATTCACCTTC+AGG | 0.415566 | 8.2:+72383547 | None:intergenic |
CAGATAGTCGGCATGTCTGT+GGG | 0.422718 | 8.2:+72393108 | None:intergenic |
GTTTGCGGTGGACAAATTGT+TGG | 0.422755 | 8.2:-72384856 | MS.gene08465:CDS |
AGATTGTATCACTCCCGGTT+TGG | 0.423740 | 8.2:-72384068 | MS.gene08465:CDS |
CAAAATATCCTCCAGGATCA+AGG | 0.424882 | 8.2:+72392496 | None:intergenic |
TCAAACTTCCTAGCTTTGTC+TGG | 0.424902 | 8.2:+72384828 | None:intergenic |
TAATGAGGAAAACAATGCTT+TGG | 0.431535 | 8.2:-72381678 | MS.gene08465:intron |
GTTTGTTCATCTTGTAAGAA+TGG | 0.432905 | 8.2:-72372658 | MS.gene08465:CDS |
GTGTTGTGTTTACTTAGCTT+CGG | 0.438709 | 8.2:-72381920 | MS.gene08465:CDS |
CAAATAGAAGAGAGATAACT+TGG | 0.440237 | 8.2:+72385002 | None:intergenic |
GAAGATTGCCTATTATGTTA+CGG | 0.440706 | 8.2:-72392670 | MS.gene08465:CDS |
CGTGATTGCTTAATTGCATA+TGG | 0.441077 | 8.2:-72373968 | MS.gene08465:CDS |
TAGAGCTTTGCAGCCTAGCC+AGG | 0.441570 | 8.2:-72383814 | MS.gene08465:intron |
CATATTGCCTAAAGCTCTAT+CGG | 0.441934 | 8.2:+72378451 | None:intergenic |
ATACATTTCAATTACCTCAA+TGG | 0.442941 | 8.2:+72389825 | None:intergenic |
GTCGTTGTATAGTTATGAAA+AGG | 0.445169 | 8.2:-72378630 | MS.gene08465:intron |
GCATGCATATGGTAGCTTCA+TGG | 0.445247 | 8.2:+72372621 | None:intergenic |
AGTATCTCTTTGCAATGATA+AGG | 0.445610 | 8.2:-72377055 | MS.gene08465:CDS |
ACAGCGACATATATACATTT+CGG | 0.446174 | 8.2:+72386007 | None:intergenic |
CGAGAGAGTCCTTTCCAAAC+CGG | 0.446245 | 8.2:+72384054 | None:intergenic |
TAAAACGTACCAGAGAAATC+AGG | 0.447508 | 8.2:+72383470 | None:intergenic |
GGCGAGTGTCCCCTTGATCC+TGG | 0.448789 | 8.2:-72392507 | MS.gene08465:CDS |
ATCTCCCAGAAACACATATC+AGG | 0.450896 | 8.2:-72381465 | MS.gene08465:intron |
TAGGTTGGATATGATAAGCT+TGG | 0.451032 | 8.2:-72378751 | MS.gene08465:CDS |
TATTCAACATCGACATATAT+CGG | 0.451772 | 8.2:+72392832 | None:intergenic |
GAAAGACCCGATAGAGCTTT+AGG | 0.451982 | 8.2:-72378458 | MS.gene08465:CDS |
TGCAAACATGCAACCTCAAA+AGG | 0.453043 | 8.2:-72386412 | MS.gene08465:intron |
TGCTTACTGTAGTGTGCAAT+GGG | 0.456352 | 8.2:-72381339 | MS.gene08465:intron |
TTCTATTGTTGTTAGGTGCA+CGG | 0.461033 | 8.2:-72386043 | MS.gene08465:intron |
AAGATGCATGCTCGTGGTAG+TGG | 0.462555 | 8.2:-72375306 | MS.gene08465:CDS |
AGGTCTACGAGTTGGAGAAA+TGG | 0.466194 | 8.2:-72373993 | MS.gene08465:CDS |
TGAGGATTCATAATCAGATC+TGG | 0.467678 | 8.2:+72376803 | None:intergenic |
ATGGTTATAATGAAAGCTAT+GGG | 0.469205 | 8.2:-72389919 | MS.gene08465:CDS |
GACAAATGAAATTAAGTTTG+CGG | 0.470432 | 8.2:-72384871 | MS.gene08465:CDS |
GTTATATGCTATATTTCCCA+TGG | 0.474698 | 8.2:+72381308 | None:intergenic |
GAAAACATGGAACATCTCTC+TGG | 0.475286 | 8.2:-72382766 | MS.gene08465:CDS |
TGTTGGCTGTCTAGTTATCA+GGG | 0.475649 | 8.2:+72375275 | None:intergenic |
ACTTTATTCTGTGTTTCAGT+TGG | 0.476453 | 8.2:+72377253 | None:intergenic |
AAAATGACAAGAAAGGAATT+GGG | 0.479700 | 8.2:+72382727 | None:intergenic |
CTGACAAGGTTGAAACCATA+AGG | 0.481373 | 8.2:-72376131 | MS.gene08465:intron |
TCTAGATACTTGATGATGAT+GGG | 0.483289 | 8.2:-72377333 | MS.gene08465:intron |
TGGCTAGGCTGCAAAGCTCT+AGG | 0.483789 | 8.2:+72383816 | None:intergenic |
GTCCGACAAAAGTATTCAAA+TGG | 0.487927 | 8.2:-72378497 | MS.gene08465:CDS |
TTCCTAGACTTCTCAAACTG+TGG | 0.488374 | 8.2:+72383849 | None:intergenic |
CTCAGGCCTCCGAGTGTGAC+GGG | 0.489255 | 8.2:+72377005 | None:intergenic |
TATGGTTATAATGAAAGCTA+TGG | 0.491539 | 8.2:-72389920 | MS.gene08465:CDS |
ATACCATCCCTTGTTATTGA+CGG | 0.493036 | 8.2:+72393146 | None:intergenic |
ATCAAGAGTTTGCATGCATA+TGG | 0.495063 | 8.2:+72372610 | None:intergenic |
TAGACTTCTCAAACTGTGGC+TGG | 0.495619 | 8.2:+72383853 | None:intergenic |
TATTTATATACAGTGCATAT+CGG | 0.496342 | 8.2:-72377128 | MS.gene08465:intron |
ACAACCTGATATGTGTTTCT+GGG | 0.496658 | 8.2:+72381461 | None:intergenic |
TCAACATTCAATAAATGTCA+TGG | 0.499190 | 8.2:-72377096 | MS.gene08465:CDS |
TTCACCTTCAGGAGTATCGC+AGG | 0.499192 | 8.2:+72383558 | None:intergenic |
AATCAACGTAGTCCAATGCT+TGG | 0.499502 | 8.2:+72389245 | None:intergenic |
ATAAACCAATAGATAAAGTA+AGG | 0.500133 | 8.2:+72378878 | None:intergenic |
AACTACCATTGTGATGGAAA+AGG | 0.502065 | 8.2:-72390135 | MS.gene08465:CDS |
GAAGCCGAGCTTGCAAAACT+TGG | 0.502304 | 8.2:-72392617 | MS.gene08465:intron |
AACATTTCTTGCAAATGTGC+CGG | 0.505273 | 8.2:-72386215 | MS.gene08465:intron |
GGATTTCAGCTTACCTGGCT+AGG | 0.507068 | 8.2:+72383801 | None:intergenic |
AATCGAGATTGTATCACTCC+CGG | 0.507114 | 8.2:-72384073 | MS.gene08465:CDS |
GAACTTCTTGGAGGGAAAGC+AGG | 0.507171 | 8.2:-72376210 | MS.gene08465:CDS |
TCAGATAGTCGGCATGTCTG+TGG | 0.510182 | 8.2:+72393107 | None:intergenic |
ATCAACGTAGTCCAATGCTT+GGG | 0.510954 | 8.2:+72389246 | None:intergenic |
TCTACTTATGCCATCCATTG+AGG | 0.512226 | 8.2:-72389839 | MS.gene08465:intron |
GACAACAAAATCAATTGAGC+TGG | 0.514877 | 8.2:-72378838 | MS.gene08465:intron |
GATAAATTCAGTAGCAGACA+TGG | 0.518411 | 8.2:-72376893 | MS.gene08465:CDS |
CCTCAGGCCTCCGAGTGTGA+CGG | 0.519046 | 8.2:+72377004 | None:intergenic |
ACAGAAGGGAGAGCTAGAAA+TGG | 0.522613 | 8.2:-72375255 | MS.gene08465:CDS |
TTGCGGAACAATTGTCCAGC+AGG | 0.523050 | 8.2:-72376858 | MS.gene08465:CDS |
TCCTCTCGTCATTGCTGACA+AGG | 0.523919 | 8.2:-72381878 | MS.gene08465:CDS |
GGCTAGGCTGCAAAGCTCTA+GGG | 0.524481 | 8.2:+72383817 | None:intergenic |
TGGATAAGCCAGACAAAGCT+AGG | 0.525629 | 8.2:-72384836 | MS.gene08465:CDS |
TTGCTTACTGTAGTGTGCAA+TGG | 0.530789 | 8.2:-72381340 | MS.gene08465:intron |
AAAATATCCTCCAGGATCAA+GGG | 0.532149 | 8.2:+72392497 | None:intergenic |
ATACAGGTCTGCAGAGCTTG+TGG | 0.534933 | 8.2:-72372718 | MS.gene08465:intron |
TACAACCATAAGTTGAAAGC+TGG | 0.535797 | 8.2:-72372682 | MS.gene08465:CDS |
ATTTACACAAGCCCAAGCAT+TGG | 0.539082 | 8.2:-72389257 | MS.gene08465:CDS |
GTGGTCTCCTGTGCTTGCCA+AGG | 0.539894 | 8.2:+72382692 | None:intergenic |
GGATATGATAAGCTTGGAGC+AGG | 0.540715 | 8.2:-72378745 | MS.gene08465:CDS |
GTATGATCCTTGGCAAGCAC+AGG | 0.541204 | 8.2:-72382699 | MS.gene08465:CDS |
ATTGGACTACGTTGATTCAA+AGG | 0.541914 | 8.2:-72389239 | MS.gene08465:CDS |
TGAATCCTCATGGGTTTCCA+AGG | 0.543421 | 8.2:-72376790 | MS.gene08465:intron |
TGTGTTTACTTAGCTTCGGA+TGG | 0.543915 | 8.2:-72381916 | MS.gene08465:CDS |
GATCTGATTATGAATCCTCA+TGG | 0.543986 | 8.2:-72376800 | MS.gene08465:CDS |
ATTTCAATTACCTCAATGGA+TGG | 0.544891 | 8.2:+72389829 | None:intergenic |
CATGGGCAGAAAGGTGTTTG+CGG | 0.545348 | 8.2:-72376875 | MS.gene08465:CDS |
AGTAGCAGACATGGGCAGAA+AGG | 0.545438 | 8.2:-72376884 | MS.gene08465:CDS |
GGCATCAGTCGAATGACAGT+TGG | 0.546259 | 8.2:-72376243 | MS.gene08465:intron |
AAAACGTACCAGAGAAATCA+GGG | 0.549229 | 8.2:+72383471 | None:intergenic |
AGCCACAGTTTGAGAAGTCT+AGG | 0.550170 | 8.2:-72383851 | MS.gene08465:CDS |
CTGGGAGATTGATTATGATG+AGG | 0.554139 | 8.2:+72381479 | None:intergenic |
TGAGTATCTTGATGTTAATG+AGG | 0.556929 | 8.2:-72381693 | MS.gene08465:CDS |
GTATCACTCCCGGTTTGGAA+AGG | 0.560574 | 8.2:-72384063 | MS.gene08465:CDS |
TTGACTACAAAATATCCTCC+AGG | 0.564734 | 8.2:+72392489 | None:intergenic |
GTTGGCCTAATAATTTCGCC+AGG | 0.566945 | 8.2:+72377301 | None:intergenic |
AAAATGGGAAGTCTTCCTGC+TGG | 0.570263 | 8.2:+72376843 | None:intergenic |
TGCAATGGGAAAGCAAGCCA+TGG | 0.571900 | 8.2:-72381325 | MS.gene08465:CDS |
AAGATGATAGAACTTCTTGG+AGG | 0.573254 | 8.2:-72376219 | MS.gene08465:CDS |
AAATGAAATTAAGTTTGCGG+TGG | 0.573964 | 8.2:-72384868 | MS.gene08465:CDS |
AATTTCTAACCCGTCACACT+CGG | 0.574678 | 8.2:-72377014 | MS.gene08465:CDS |
AGAAAGTGGTCATGCTGACA+AGG | 0.575298 | 8.2:-72376145 | MS.gene08465:CDS |
GAAGGGAGAGCTAGAAATGG+AGG | 0.575836 | 8.2:-72375252 | MS.gene08465:intron |
TCATGTCACTACTGATGAAG+AGG | 0.576837 | 8.2:-72383500 | MS.gene08465:CDS |
TTGGTCAACCGTCAATAACA+AGG | 0.577459 | 8.2:-72393154 | MS.gene08465:CDS |
TGTCTATGTCAATGAAAAGC+AGG | 0.577589 | 8.2:-72382524 | MS.gene08465:intron |
ATCTGATTATGAATCCTCAT+GGG | 0.577851 | 8.2:-72376799 | MS.gene08465:CDS |
TTGTTGATATAAATGTCAGT+TGG | 0.578913 | 8.2:+72377283 | None:intergenic |
TGACATGAGTCATCAAAGCC+AGG | 0.579560 | 8.2:+72383515 | None:intergenic |
TAGAGCTTTAGGCAATATGC+AGG | 0.579745 | 8.2:-72378447 | MS.gene08465:intron |
CCTACGTTCGGTCAGATAGT+CGG | 0.580628 | 8.2:+72393096 | None:intergenic |
ATAACTAGACAGCCAACAGA+AGG | 0.581097 | 8.2:-72375270 | MS.gene08465:CDS |
TTATGTTTAGGTCTACGAGT+TGG | 0.581703 | 8.2:-72374001 | MS.gene08465:intron |
GGTACCCGCATATTGAACTA+AGG | 0.582627 | 8.2:-72393802 | MS.gene08465:intron |
ATATTGCCTAAAGCTCTATC+GGG | 0.585140 | 8.2:+72378452 | None:intergenic |
CAATCTTCCAATTAAAACAT+CGG | 0.585404 | 8.2:+72392685 | None:intergenic |
TAATAAAATTAGAGTGCCAA+AGG | 0.589749 | 8.2:-72392791 | MS.gene08465:intron |
TTATGTCGGAAACAAACGAT+TGG | 0.590203 | 8.2:-72385035 | MS.gene08465:CDS |
TATAATGAAAGCTATGGGGA+TGG | 0.590654 | 8.2:-72389914 | MS.gene08465:CDS |
GTTTACTTAGCTTCGGATGG+TGG | 0.590765 | 8.2:-72381913 | MS.gene08465:CDS |
ACTTGTTCCCGAATTCCTCA+AGG | 0.591959 | 8.2:-72394019 | MS.gene08465:intron |
GAGAGAGTCCTTTCCAAACC+GGG | 0.593600 | 8.2:+72384055 | None:intergenic |
TGTCGATGTTGAATACACTC+AGG | 0.599132 | 8.2:-72392824 | MS.gene08465:CDS |
CTACAGTGGATATGATATTG+AGG | 0.599159 | 8.2:-72378695 | MS.gene08465:CDS |
ACTCCTGAAGGTGAATCTTG+TGG | 0.600197 | 8.2:-72383550 | MS.gene08465:CDS |
TTGGAAAGGACTCTCTCGAC+TGG | 0.600306 | 8.2:-72384049 | MS.gene08465:CDS |
GAGAAGTCTAGGAAAGTAAG+TGG | 0.600420 | 8.2:-72383840 | MS.gene08465:CDS |
AACATGGCTTCAACTACAGT+GGG | 0.602943 | 8.2:-72376020 | MS.gene08465:CDS |
TGTCACTACTGATGAAGAGG+AGG | 0.604246 | 8.2:-72383497 | MS.gene08465:CDS |
CAAACTCCTAAAATAGTGAA+AGG | 0.605441 | 8.2:+72381521 | None:intergenic |
AGATGATAGAACTTCTTGGA+GGG | 0.607982 | 8.2:-72376218 | MS.gene08465:CDS |
CAACCGTCAATAACAAGGGA+TGG | 0.609429 | 8.2:-72393149 | MS.gene08465:CDS |
AATTCTAAATAAGGATGCGA+TGG | 0.610719 | 8.2:-72385960 | MS.gene08465:CDS |
AAAGTAAGGTGTCCATCCGT+CGG | 0.610969 | 8.2:+72378892 | None:intergenic |
TTGTGGACTAGTAAAGAACC+TGG | 0.611178 | 8.2:-72383533 | MS.gene08465:CDS |
CCCTTGTCAGCAATGACGAG+AGG | 0.614173 | 8.2:+72381877 | None:intergenic |
TGTCAGCAATGACGAGAGGA+CGG | 0.614740 | 8.2:+72381881 | None:intergenic |
TGTAGTCAAAGGGAATGAGA+AGG | 0.615022 | 8.2:-72392475 | MS.gene08465:intron |
AACAAATCATCTCTTGATCG+AGG | 0.615110 | 8.2:-72378658 | MS.gene08465:CDS |
AGGTTTAAGATGCACAAGAG+TGG | 0.616496 | 8.2:-72384010 | MS.gene08465:CDS |
GTCGATGTTGAATACACTCA+GGG | 0.616902 | 8.2:-72392823 | MS.gene08465:CDS |
TTCAATATGCGGGTACCGAG+AGG | 0.617025 | 8.2:+72393808 | None:intergenic |
CTACCAGAAATTAAAACACA+TGG | 0.617916 | 8.2:-72375609 | MS.gene08465:intron |
TGTCCCTGCGATACTCCTGA+AGG | 0.617926 | 8.2:-72383562 | MS.gene08465:CDS |
TCTGTGGGGTAACTAACTCA+AGG | 0.620514 | 8.2:+72393123 | None:intergenic |
ATTGTCTTATCAAAGCCTCT+CGG | 0.622598 | 8.2:-72393823 | MS.gene08465:CDS |
TAAGGATGCGATGGATGACA+AGG | 0.628251 | 8.2:-72385951 | MS.gene08465:intron |
GGGAAATATAGCATATAACC+AGG | 0.628544 | 8.2:-72381304 | MS.gene08465:intron |
GTAGCTGTCATGAGCTACAG+TGG | 0.628748 | 8.2:-72378709 | MS.gene08465:CDS |
CCTCTCGTCATTGCTGACAA+GGG | 0.631421 | 8.2:-72381877 | MS.gene08465:CDS |
CCGTCACACTCGGAGGCCTG+AGG | 0.634563 | 8.2:-72377004 | MS.gene08465:intron |
CGTACCTTAGTTCAATATGC+GGG | 0.636906 | 8.2:+72393798 | None:intergenic |
TGGCAAGCACAGGAGACCAC+AGG | 0.640501 | 8.2:-72382689 | MS.gene08465:intron |
AAACATGGCTTCAACTACAG+TGG | 0.642929 | 8.2:-72376021 | MS.gene08465:CDS |
TGATGGAAAAGGAGAAGTTG+TGG | 0.644702 | 8.2:-72390124 | MS.gene08465:CDS |
GATGATGGGATTGCTTCACC+TGG | 0.645108 | 8.2:-72377319 | MS.gene08465:CDS |
AAATATCCTCCAGGATCAAG+GGG | 0.645726 | 8.2:+72392498 | None:intergenic |
TAAATGTCATGGAGGTGAAG+TGG | 0.648127 | 8.2:-72377085 | MS.gene08465:CDS |
AGTAAAACTCTTGTGAAACA+TGG | 0.648821 | 8.2:-72376036 | MS.gene08465:CDS |
CCGTACCTTAGTTCAATATG+CGG | 0.649485 | 8.2:+72393797 | None:intergenic |
GACAGAGGACTTTACAGGTG+CGG | 0.650619 | 8.2:+72394053 | None:intergenic |
GCACAAGAGTGGAGTAACAC+AGG | 0.657325 | 8.2:-72383999 | MS.gene08465:intron |
GCAATGGGAAAGCAAGCCAT+GGG | 0.660049 | 8.2:-72381324 | MS.gene08465:CDS |
TCACCTTCAGGAGTATCGCA+GGG | 0.660133 | 8.2:+72383559 | None:intergenic |
AAGTTGAAATTTGTCGACAG+AGG | 0.663947 | 8.2:+72394038 | None:intergenic |
CTACTGCAATGAGAAAGTTG+CGG | 0.666685 | 8.2:-72382576 | MS.gene08465:CDS |
GTCACTACTGATGAAGAGGA+GGG | 0.671838 | 8.2:-72383496 | MS.gene08465:CDS |
AATTACCTTGGAAACCCATG+AGG | 0.672959 | 8.2:+72376785 | None:intergenic |
TTCTAACCCGTCACACTCGG+AGG | 0.674877 | 8.2:-72377011 | MS.gene08465:CDS |
TAACTAGACAGCCAACAGAA+GGG | 0.678654 | 8.2:-72375269 | MS.gene08465:CDS |
GTTGTCAGCAAAGGTCGTTG+AGG | 0.680537 | 8.2:+72378855 | None:intergenic |
TGGTCAACCGTCAATAACAA+GGG | 0.682009 | 8.2:-72393153 | MS.gene08465:CDS |
ATAAATTCAGTAGCAGACAT+GGG | 0.686101 | 8.2:-72376892 | MS.gene08465:CDS |
GAATAGAATAATTATAGACA+CGG | 0.686278 | 8.2:-72392084 | MS.gene08465:CDS |
CTGGATAAGATGCATGCTCG+TGG | 0.686692 | 8.2:-72375312 | MS.gene08465:CDS |
AACGTACCAGAGAAATCAGG+GGG | 0.687293 | 8.2:+72383473 | None:intergenic |
GGGAAAGCAGGAGTTTCGTG+TGG | 0.689358 | 8.2:-72376198 | MS.gene08465:CDS |
AGATAGTCGGCATGTCTGTG+GGG | 0.692448 | 8.2:+72393109 | None:intergenic |
GGACTACGTTGATTCAAAGG+CGG | 0.694056 | 8.2:-72389236 | MS.gene08465:intron |
ACATTCAATAAATGTCATGG+AGG | 0.706220 | 8.2:-72377093 | MS.gene08465:CDS |
TGGTTATAATGAAAGCTATG+GGG | 0.713501 | 8.2:-72389918 | MS.gene08465:CDS |
TGCATATGGTAGCTTCATGG+TGG | 0.731017 | 8.2:+72372624 | None:intergenic |
AAACGTACCAGAGAAATCAG+GGG | 0.735423 | 8.2:+72383472 | None:intergenic |
GAGTGTCCCCTTGATCCTGG+AGG | 0.755495 | 8.2:-72392504 | MS.gene08465:CDS |
ATAAGTAGAAAACTGTAACG+AGG | 0.757109 | 8.2:+72389853 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.2 | gene | 72372043 | 72394094 | 72372043 | ID=MS.gene08465 |
chr8.2 | mRNA | 72372043 | 72394094 | 72372043 | ID=MS.gene08465.t1;Parent=MS.gene08465 |
chr8.2 | exon | 72394020 | 72394094 | 72394020 | ID=MS.gene08465.t1.exon1;Parent=MS.gene08465.t1 |
chr8.2 | CDS | 72394020 | 72394094 | 72394020 | ID=cds.MS.gene08465.t1;Parent=MS.gene08465.t1 |
chr8.2 | exon | 72393803 | 72393924 | 72393803 | ID=MS.gene08465.t1.exon2;Parent=MS.gene08465.t1 |
chr8.2 | CDS | 72393803 | 72393924 | 72393803 | ID=cds.MS.gene08465.t1;Parent=MS.gene08465.t1 |
chr8.2 | exon | 72393101 | 72393193 | 72393101 | ID=MS.gene08465.t1.exon3;Parent=MS.gene08465.t1 |
chr8.2 | CDS | 72393101 | 72393193 | 72393101 | ID=cds.MS.gene08465.t1;Parent=MS.gene08465.t1 |
chr8.2 | exon | 72392792 | 72392864 | 72392792 | ID=MS.gene08465.t1.exon4;Parent=MS.gene08465.t1 |
chr8.2 | CDS | 72392792 | 72392864 | 72392792 | ID=cds.MS.gene08465.t1;Parent=MS.gene08465.t1 |
chr8.2 | exon | 72392618 | 72392708 | 72392618 | ID=MS.gene08465.t1.exon5;Parent=MS.gene08465.t1 |
chr8.2 | CDS | 72392618 | 72392708 | 72392618 | ID=cds.MS.gene08465.t1;Parent=MS.gene08465.t1 |
chr8.2 | exon | 72392476 | 72392528 | 72392476 | ID=MS.gene08465.t1.exon6;Parent=MS.gene08465.t1 |
chr8.2 | CDS | 72392476 | 72392528 | 72392476 | ID=cds.MS.gene08465.t1;Parent=MS.gene08465.t1 |
chr8.2 | exon | 72392071 | 72392135 | 72392071 | ID=MS.gene08465.t1.exon7;Parent=MS.gene08465.t1 |
chr8.2 | CDS | 72392071 | 72392135 | 72392071 | ID=cds.MS.gene08465.t1;Parent=MS.gene08465.t1 |
chr8.2 | exon | 72390097 | 72390202 | 72390097 | ID=MS.gene08465.t1.exon8;Parent=MS.gene08465.t1 |
chr8.2 | CDS | 72390097 | 72390202 | 72390097 | ID=cds.MS.gene08465.t1;Parent=MS.gene08465.t1 |
chr8.2 | exon | 72389840 | 72389950 | 72389840 | ID=MS.gene08465.t1.exon9;Parent=MS.gene08465.t1 |
chr8.2 | CDS | 72389840 | 72389950 | 72389840 | ID=cds.MS.gene08465.t1;Parent=MS.gene08465.t1 |
chr8.2 | exon | 72389237 | 72389299 | 72389237 | ID=MS.gene08465.t1.exon10;Parent=MS.gene08465.t1 |
chr8.2 | CDS | 72389237 | 72389299 | 72389237 | ID=cds.MS.gene08465.t1;Parent=MS.gene08465.t1 |
chr8.2 | exon | 72386413 | 72386451 | 72386413 | ID=MS.gene08465.t1.exon11;Parent=MS.gene08465.t1 |
chr8.2 | CDS | 72386413 | 72386451 | 72386413 | ID=cds.MS.gene08465.t1;Parent=MS.gene08465.t1 |
chr8.2 | exon | 72386216 | 72386266 | 72386216 | ID=MS.gene08465.t1.exon12;Parent=MS.gene08465.t1 |
chr8.2 | CDS | 72386216 | 72386266 | 72386216 | ID=cds.MS.gene08465.t1;Parent=MS.gene08465.t1 |
chr8.2 | exon | 72385952 | 72386050 | 72385952 | ID=MS.gene08465.t1.exon13;Parent=MS.gene08465.t1 |
chr8.2 | CDS | 72385952 | 72386050 | 72385952 | ID=cds.MS.gene08465.t1;Parent=MS.gene08465.t1 |
chr8.2 | exon | 72385000 | 72385059 | 72385000 | ID=MS.gene08465.t1.exon14;Parent=MS.gene08465.t1 |
chr8.2 | CDS | 72385000 | 72385059 | 72385000 | ID=cds.MS.gene08465.t1;Parent=MS.gene08465.t1 |
chr8.2 | exon | 72384818 | 72384910 | 72384818 | ID=MS.gene08465.t1.exon15;Parent=MS.gene08465.t1 |
chr8.2 | CDS | 72384818 | 72384910 | 72384818 | ID=cds.MS.gene08465.t1;Parent=MS.gene08465.t1 |
chr8.2 | exon | 72384000 | 72384104 | 72384000 | ID=MS.gene08465.t1.exon16;Parent=MS.gene08465.t1 |
chr8.2 | CDS | 72384000 | 72384104 | 72384000 | ID=cds.MS.gene08465.t1;Parent=MS.gene08465.t1 |
chr8.2 | exon | 72383815 | 72383925 | 72383815 | ID=MS.gene08465.t1.exon17;Parent=MS.gene08465.t1 |
chr8.2 | CDS | 72383815 | 72383925 | 72383815 | ID=cds.MS.gene08465.t1;Parent=MS.gene08465.t1 |
chr8.2 | exon | 72383480 | 72383596 | 72383480 | ID=MS.gene08465.t1.exon18;Parent=MS.gene08465.t1 |
chr8.2 | CDS | 72383480 | 72383596 | 72383480 | ID=cds.MS.gene08465.t1;Parent=MS.gene08465.t1 |
chr8.2 | exon | 72382690 | 72382806 | 72382690 | ID=MS.gene08465.t1.exon19;Parent=MS.gene08465.t1 |
chr8.2 | CDS | 72382690 | 72382806 | 72382690 | ID=cds.MS.gene08465.t1;Parent=MS.gene08465.t1 |
chr8.2 | exon | 72382525 | 72382605 | 72382525 | ID=MS.gene08465.t1.exon20;Parent=MS.gene08465.t1 |
chr8.2 | CDS | 72382525 | 72382605 | 72382525 | ID=cds.MS.gene08465.t1;Parent=MS.gene08465.t1 |
chr8.2 | exon | 72381837 | 72381941 | 72381837 | ID=MS.gene08465.t1.exon21;Parent=MS.gene08465.t1 |
chr8.2 | CDS | 72381837 | 72381941 | 72381837 | ID=cds.MS.gene08465.t1;Parent=MS.gene08465.t1 |
chr8.2 | exon | 72381679 | 72381759 | 72381679 | ID=MS.gene08465.t1.exon22;Parent=MS.gene08465.t1 |
chr8.2 | CDS | 72381679 | 72381759 | 72381679 | ID=cds.MS.gene08465.t1;Parent=MS.gene08465.t1 |
chr8.2 | exon | 72381466 | 72381597 | 72381466 | ID=MS.gene08465.t1.exon23;Parent=MS.gene08465.t1 |
chr8.2 | CDS | 72381466 | 72381597 | 72381466 | ID=cds.MS.gene08465.t1;Parent=MS.gene08465.t1 |
chr8.2 | exon | 72381305 | 72381349 | 72381305 | ID=MS.gene08465.t1.exon24;Parent=MS.gene08465.t1 |
chr8.2 | CDS | 72381305 | 72381349 | 72381305 | ID=cds.MS.gene08465.t1;Parent=MS.gene08465.t1 |
chr8.2 | exon | 72378839 | 72378916 | 72378839 | ID=MS.gene08465.t1.exon25;Parent=MS.gene08465.t1 |
chr8.2 | CDS | 72378839 | 72378916 | 72378839 | ID=cds.MS.gene08465.t1;Parent=MS.gene08465.t1 |
chr8.2 | exon | 72378631 | 72378770 | 72378631 | ID=MS.gene08465.t1.exon26;Parent=MS.gene08465.t1 |
chr8.2 | CDS | 72378631 | 72378770 | 72378631 | ID=cds.MS.gene08465.t1;Parent=MS.gene08465.t1 |
chr8.2 | exon | 72378448 | 72378529 | 72378448 | ID=MS.gene08465.t1.exon27;Parent=MS.gene08465.t1 |
chr8.2 | CDS | 72378448 | 72378529 | 72378448 | ID=cds.MS.gene08465.t1;Parent=MS.gene08465.t1 |
chr8.2 | exon | 72377229 | 72377350 | 72377229 | ID=MS.gene08465.t1.exon28;Parent=MS.gene08465.t1 |
chr8.2 | CDS | 72377229 | 72377350 | 72377229 | ID=cds.MS.gene08465.t1;Parent=MS.gene08465.t1 |
chr8.2 | exon | 72377005 | 72377137 | 72377005 | ID=MS.gene08465.t1.exon29;Parent=MS.gene08465.t1 |
chr8.2 | CDS | 72377005 | 72377137 | 72377005 | ID=cds.MS.gene08465.t1;Parent=MS.gene08465.t1 |
chr8.2 | exon | 72376791 | 72376921 | 72376791 | ID=MS.gene08465.t1.exon30;Parent=MS.gene08465.t1 |
chr8.2 | CDS | 72376791 | 72376921 | 72376791 | ID=cds.MS.gene08465.t1;Parent=MS.gene08465.t1 |
chr8.2 | exon | 72376132 | 72376257 | 72376132 | ID=MS.gene08465.t1.exon31;Parent=MS.gene08465.t1 |
chr8.2 | CDS | 72376132 | 72376257 | 72376132 | ID=cds.MS.gene08465.t1;Parent=MS.gene08465.t1 |
chr8.2 | exon | 72376001 | 72376056 | 72376001 | ID=MS.gene08465.t1.exon32;Parent=MS.gene08465.t1 |
chr8.2 | CDS | 72376001 | 72376056 | 72376001 | ID=cds.MS.gene08465.t1;Parent=MS.gene08465.t1 |
chr8.2 | exon | 72375610 | 72375680 | 72375610 | ID=MS.gene08465.t1.exon33;Parent=MS.gene08465.t1 |
chr8.2 | CDS | 72375610 | 72375680 | 72375610 | ID=cds.MS.gene08465.t1;Parent=MS.gene08465.t1 |
chr8.2 | exon | 72375253 | 72375337 | 72375253 | ID=MS.gene08465.t1.exon34;Parent=MS.gene08465.t1 |
chr8.2 | CDS | 72375253 | 72375337 | 72375253 | ID=cds.MS.gene08465.t1;Parent=MS.gene08465.t1 |
chr8.2 | exon | 72373910 | 72374013 | 72373910 | ID=MS.gene08465.t1.exon35;Parent=MS.gene08465.t1 |
chr8.2 | CDS | 72373910 | 72374013 | 72373910 | ID=cds.MS.gene08465.t1;Parent=MS.gene08465.t1 |
chr8.2 | exon | 72372606 | 72372734 | 72372606 | ID=MS.gene08465.t1.exon36;Parent=MS.gene08465.t1 |
chr8.2 | CDS | 72372606 | 72372734 | 72372606 | ID=cds.MS.gene08465.t1;Parent=MS.gene08465.t1 |
chr8.2 | exon | 72372043 | 72372057 | 72372043 | ID=MS.gene08465.t1.exon37;Parent=MS.gene08465.t1 |
chr8.2 | CDS | 72372043 | 72372057 | 72372043 | ID=cds.MS.gene08465.t1;Parent=MS.gene08465.t1 |
Gene Sequence |
Protein sequence |