Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26950.t1 | KEH18521.1 | 84.5 | 1136 | 168 | 4 | 1 | 1134 | 872 | 2001 | 0.00E+00 | 1938.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26950.t1 | F4KD38 | 72.4 | 1147 | 300 | 5 | 1 | 1134 | 17 | 1160 | 0.0e+00 | 1671.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26950.t1 | A0A072TMT8 | 84.5 | 1136 | 168 | 4 | 1 | 1134 | 872 | 2001 | 0.0e+00 | 1938.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26950.t1 | MTR_8g023445 | 84.433 | 1137 | 169 | 4 | 1 | 1135 | 872 | 2002 | 0.0 | 1986 |
MS.gene26950.t1 | MTR_1g023500 | 37.605 | 1186 | 646 | 23 | 17 | 1137 | 30 | 1186 | 0.0 | 744 |
MS.gene26950.t1 | MTR_3g105990 | 31.063 | 1204 | 667 | 38 | 23 | 1133 | 53 | 1186 | 2.21e-153 | 489 |
MS.gene26950.t1 | MTR_1g022135 | 77.491 | 271 | 26 | 3 | 78 | 346 | 1 | 238 | 4.20e-132 | 404 |
MS.gene26950.t1 | MTR_1g022135 | 88.732 | 71 | 8 | 0 | 1067 | 1137 | 229 | 299 | 3.80e-34 | 134 |
MS.gene26950.t1 | MTR_4g124030 | 28.039 | 1234 | 690 | 38 | 23 | 1134 | 25 | 1182 | 2.33e-118 | 395 |
MS.gene26950.t1 | MTR_0002s0510 | 24.608 | 638 | 415 | 18 | 465 | 1071 | 467 | 1069 | 2.55e-40 | 164 |
MS.gene26950.t1 | MTR_1g022125 | 95.588 | 68 | 3 | 0 | 1 | 68 | 1 | 68 | 6.80e-40 | 142 |
MS.gene26950.t1 | MTR_4g051130 | 25.750 | 567 | 310 | 14 | 647 | 1126 | 496 | 1038 | 8.37e-35 | 145 |
MS.gene26950.t1 | MTR_0189s0050 | 26.305 | 498 | 279 | 21 | 23 | 465 | 51 | 515 | 1.06e-32 | 134 |
MS.gene26950.t1 | MTR_8g023440 | 74.510 | 51 | 13 | 0 | 474 | 524 | 102 | 152 | 1.22e-16 | 79.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26950.t1 | AT5G45140 | 72.387 | 1148 | 301 | 5 | 1 | 1135 | 17 | 1161 | 0.0 | 1717 |
MS.gene26950.t1 | AT5G45140 | 72.387 | 1148 | 301 | 5 | 1 | 1135 | 17 | 1161 | 0.0 | 1717 |
MS.gene26950.t1 | AT5G45140 | 70.111 | 813 | 231 | 2 | 1 | 802 | 17 | 828 | 0.0 | 1169 |
MS.gene26950.t1 | AT4G21710 | 37.065 | 1179 | 652 | 21 | 15 | 1130 | 25 | 1176 | 0.0 | 731 |
MS.gene26950.t1 | AT3G23780 | 29.358 | 1199 | 707 | 30 | 3 | 1127 | 32 | 1164 | 1.28e-139 | 452 |
MS.gene26950.t1 | AT3G23780 | 29.358 | 1199 | 707 | 30 | 3 | 1127 | 32 | 1164 | 1.28e-139 | 452 |
MS.gene26950.t1 | AT3G18090 | 30.636 | 1100 | 647 | 27 | 90 | 1127 | 2 | 1047 | 3.91e-135 | 437 |
MS.gene26950.t1 | AT1G29940 | 27.586 | 1218 | 741 | 35 | 10 | 1134 | 3 | 1172 | 1.77e-112 | 379 |
MS.gene26950.t1 | AT3G18090 | 28.872 | 904 | 546 | 23 | 90 | 948 | 2 | 853 | 1.20e-91 | 315 |
MS.gene26950.t1 | AT3G18090 | 28.872 | 904 | 546 | 23 | 90 | 948 | 2 | 853 | 1.43e-91 | 315 |
MS.gene26950.t1 | ATCG00190 | 27.804 | 428 | 256 | 11 | 728 | 1126 | 650 | 1053 | 6.52e-34 | 142 |
Find 230 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTATTACAGTGCTATATTT+TGG | 0.104611 | 1.1:-2226830 | MS.gene26950:intron |
CTGCTCCTGGCGAAATTATT+AGG | 0.208803 | 1.1:-2223148 | MS.gene26950:CDS |
GTTATCATTTATAAGTTCTT+TGG | 0.212782 | 1.1:-2228441 | MS.gene26950:CDS |
GATAACCTGATAAGTGTTTC+TGG | 0.217020 | 1.1:+2225418 | None:intergenic |
CAATCAATTGTACAATTTCT+TGG | 0.219014 | 1.1:+2231599 | None:intergenic |
CAAATACCTTTCTCAGAAAA+TGG | 0.223537 | 1.1:+2222663 | None:intergenic |
TGTCTAGTCATCAGGGTCTT+AGG | 0.225042 | 1.1:+2217648 | None:intergenic |
TTTCATTATGGAAGTGCTTT+TGG | 0.226653 | 1.1:-2220405 | MS.gene26950:CDS |
GGGAAAGACTTCATTTATTC+AGG | 0.231341 | 1.1:-2220232 | MS.gene26950:intron |
GTGTGTTCGTAGCTTCTTAA+TGG | 0.247710 | 1.1:-2228648 | MS.gene26950:intron |
TATCCAATAGGTTCCTCTTA+TGG | 0.266141 | 1.1:-2231653 | MS.gene26950:intron |
TCATCATATGAAAGAGTTAA+AGG | 0.266666 | 1.1:-2225810 | MS.gene26950:intron |
TTGCGGACTAGTAAAGAATT+TGG | 0.267641 | 1.1:-2228079 | MS.gene26950:CDS |
CCATACCTCAGATAAATATA+TGG | 0.276549 | 1.1:+2234023 | None:intergenic |
GACAGATAAAATTAAGAAAA+TGG | 0.276563 | 1.1:-2229382 | MS.gene26950:CDS |
AGGTACCAGCTTTCAACTTA+TGG | 0.276964 | 1.1:+2215400 | None:intergenic |
AATGGATGCAATTCTAAATA+AGG | 0.278220 | 1.1:-2230106 | MS.gene26950:CDS |
TTGCGGAGAGCTTGTCTAAT+TGG | 0.289695 | 1.1:-2226569 | MS.gene26950:CDS |
TCATGTGGTAAATTTCATTA+TGG | 0.318497 | 1.1:-2220417 | MS.gene26950:CDS |
CTGTAGGCTGTCTAGTCATC+AGG | 0.319180 | 1.1:+2217640 | None:intergenic |
TCTAGGGCCGCTTACTTTCC+TGG | 0.323783 | 1.1:+2228382 | None:intergenic |
CAAACTCCTAAGATAGTAAA+AGG | 0.327644 | 1.1:+2225479 | None:intergenic |
TCTGCCGAAATGTATATATC+TGG | 0.331584 | 1.1:-2230148 | MS.gene26950:CDS |
CTACAACTAACTTGCCTGAT+AGG | 0.333997 | 1.1:-2223070 | MS.gene26950:intron |
TTTAATTTCTGGTAGTATAT+TGG | 0.344466 | 1.1:+2217991 | None:intergenic |
TTGCATTATCTCTTAAACTT+TGG | 0.345490 | 1.1:+2215048 | None:intergenic |
CAAGAAATTGTACAATTGAT+TGG | 0.346455 | 1.1:-2231598 | MS.gene26950:CDS |
GTGGTTTGACTCTTGTCATT+TGG | 0.349163 | 1.1:+2228417 | None:intergenic |
AAATGTTAAACGAACCTATC+AGG | 0.353953 | 1.1:+2223056 | None:intergenic |
TCATCTCTTGATCGAGGCTT+TGG | 0.354559 | 1.1:-2224047 | MS.gene26950:CDS |
CAATGATATCTCTCTTGGTT+TGG | 0.356316 | 1.1:-2228616 | MS.gene26950:CDS |
AGGATTGGTGAAGCAACATT+TGG | 0.357035 | 1.1:-2234123 | MS.gene26950:CDS |
TGCATGCAAACTCTTGATTC+AGG | 0.362458 | 1.1:-2215328 | MS.gene26950:intron |
GAGGTGTCTCCAGCTCTATT+TGG | 0.364784 | 1.1:+2223846 | None:intergenic |
CAACAGCTCCGCAACATAAT+AGG | 0.364918 | 1.1:+2232843 | None:intergenic |
CAGTGATTCTTATGAAGTTC+AGG | 0.374944 | 1.1:-2216404 | MS.gene26950:intron |
AAATTCAATAAATCTATAGA+AGG | 0.375466 | 1.1:-2222945 | MS.gene26950:CDS |
CAGCTGCCATGTTAGAAAAC+CGG | 0.379815 | 1.1:+2230580 | None:intergenic |
TTATCATTTATAAGTTCTTT+GGG | 0.380340 | 1.1:-2228440 | MS.gene26950:CDS |
GATAAGTGTTTCTGGGAGAT+TGG | 0.380730 | 1.1:+2225426 | None:intergenic |
AATTTATTCTTCGTATCAAC+TGG | 0.385227 | 1.1:+2223095 | None:intergenic |
TCTTTCTATCCAGTGGATAT+CGG | 0.385403 | 1.1:-2222980 | MS.gene26950:intron |
TCCATTCTTACAAGATGAAC+AGG | 0.389454 | 1.1:+2215380 | None:intergenic |
TGAAACATACCAGGGAAATC+AGG | 0.395884 | 1.1:+2228016 | None:intergenic |
GTCTAGTCATCAGGGTCTTA+GGG | 0.397248 | 1.1:+2217649 | None:intergenic |
CTATAGATTGCTTTATATGA+AGG | 0.398166 | 1.1:-2225539 | MS.gene26950:intron |
ATGTCAAACTTAGCCTTGTT+CGG | 0.400793 | 1.1:+2229336 | None:intergenic |
GCTTTCATTACAACCATAAG+AGG | 0.404387 | 1.1:+2231640 | None:intergenic |
TTCTAACATGGCAGCTGAAA+AGG | 0.405727 | 1.1:-2230574 | MS.gene26950:intron |
AGTAGTTCTTTACAATGATA+AGG | 0.406416 | 1.1:-2222907 | MS.gene26950:CDS |
AGTCCGCAATCTTCACCTTC+AGG | 0.407583 | 1.1:+2228093 | None:intergenic |
AACAAGCGCTTGGAGTTATC+TGG | 0.407907 | 1.1:-2229539 | MS.gene26950:CDS |
TGTGGAGCGTGTGGGTTGTT+AGG | 0.408812 | 1.1:-2215432 | MS.gene26950:CDS |
ACAGCCAGATATATACATTT+CGG | 0.420426 | 1.1:+2230144 | None:intergenic |
GGCGAGTGTCCCCTCGATCC+TGG | 0.422010 | 1.1:-2232688 | MS.gene26950:CDS |
GGAAAGATGATAGAGCTTCT+TGG | 0.422262 | 1.1:-2220456 | MS.gene26950:CDS |
ACCTGTTCATCTTGTAAGAA+TGG | 0.424245 | 1.1:-2215381 | MS.gene26950:CDS |
ATGTCAATTACCTCAATAGA+TGG | 0.427719 | 1.1:+2231544 | None:intergenic |
TTCCTGGACTTCTCAAACTG+TGG | 0.433302 | 1.1:+2228398 | None:intergenic |
GTGGGACAATATTCATTGAT+TGG | 0.436403 | 1.1:+2215089 | None:intergenic |
GTCGTTGCATAGTTATGAAA+AGG | 0.437898 | 1.1:-2224025 | MS.gene26950:intron |
TGTATCAATGATATCTCTCT+TGG | 0.438966 | 1.1:-2228621 | MS.gene26950:CDS |
TAGAGCTTTGCAGCCTAGCC+AGG | 0.441570 | 1.1:-2228363 | MS.gene26950:intron |
TGGGAGATTGGTTATGATGA+GGG | 0.444575 | 1.1:+2225438 | None:intergenic |
TCTACTTATGCCATCTATTG+AGG | 0.445335 | 1.1:-2231554 | MS.gene26950:intron |
AGGTCTACGAGTTGGAGAAA+TGG | 0.449773 | 1.1:-2216488 | MS.gene26950:CDS |
ATCTCCCAGAAACACTTATC+AGG | 0.454819 | 1.1:-2225423 | MS.gene26950:intron |
TGTGTTTACTTGGCTTCTGA+TGG | 0.455837 | 1.1:-2225890 | MS.gene26950:CDS |
TTTCTAGCTTTCCCTTCTGT+AGG | 0.456586 | 1.1:+2217624 | None:intergenic |
TTACCATCCTTCATTATTGA+CGG | 0.462008 | 1.1:+2233402 | None:intergenic |
GAGCTTCTTGGAGGGAAAGC+AGG | 0.464015 | 1.1:-2220444 | MS.gene26950:CDS |
ATCAAGAGTTTGCATGCATA+TGG | 0.465804 | 1.1:+2215333 | None:intergenic |
TGAGGATTCATAATCAGATC+TGG | 0.467678 | 1.1:+2222639 | None:intergenic |
AATCAAGGTACTCCAATGCT+TGG | 0.471999 | 1.1:+2231113 | None:intergenic |
GATTGGTTATGATGAGGGTA+TGG | 0.474686 | 1.1:+2225443 | None:intergenic |
TGTTCAATGTAGTGTGCAAT+GGG | 0.476032 | 1.1:-2225293 | MS.gene26950:intron |
GGACAGCTTACTTTATCTAC+TGG | 0.476036 | 1.1:-2224278 | MS.gene26950:CDS |
TATTCAATATCAACAGTTAT+CGG | 0.476505 | 1.1:+2233095 | None:intergenic |
AAGATGCATGCTCGTGGTAG+TGG | 0.477247 | 1.1:-2217672 | MS.gene26950:CDS |
CATGCTTCCGATATTAACTT+CGG | 0.480069 | 1.1:+2232866 | None:intergenic |
AGCTGCCATGTTAGAAAACC+GGG | 0.480191 | 1.1:+2230581 | None:intergenic |
CTGACAAGGTTGAAACCATA+AGG | 0.481373 | 1.1:-2220365 | MS.gene26950:intron |
CCGCAGCCCGAAGTTAATAT+CGG | 0.483062 | 1.1:-2232873 | MS.gene26950:intron |
TGGCTAGGCTGCAAAGCTCT+AGG | 0.483789 | 1.1:+2228365 | None:intergenic |
TAGGTTGGATACGATAAGCT+TGG | 0.483994 | 1.1:-2224146 | MS.gene26950:CDS |
ATGGTTGTAATGAAAGCTAT+GGG | 0.484883 | 1.1:-2231634 | MS.gene26950:CDS |
CTGAACTTCATAAGAATCAC+TGG | 0.486106 | 1.1:+2216405 | None:intergenic |
TGTTATGATGAGACGCATAA+TGG | 0.487425 | 1.1:-2230124 | MS.gene26950:CDS |
CATACCTCAGATAAATATAT+GGG | 0.487479 | 1.1:+2234024 | None:intergenic |
CTGGGAGATTGGTTATGATG+AGG | 0.488676 | 1.1:+2225437 | None:intergenic |
CTCAGGCCTCCGAGTGTGAC+GGG | 0.489424 | 1.1:+2222857 | None:intergenic |
CATGGGCAGAAAGGTGTTTG+TGG | 0.491253 | 1.1:-2222711 | MS.gene26950:CDS |
ATCAAGGTACTCCAATGCTT+GGG | 0.493087 | 1.1:+2231114 | None:intergenic |
ACTATCTTAGGAGTTTGTGC+GGG | 0.493188 | 1.1:-2225473 | MS.gene26950:CDS |
GAAACATACCAGGGAAATCA+GGG | 0.494674 | 1.1:+2228017 | None:intergenic |
AGGTTCAGGATGCACAAGCC+TGG | 0.495123 | 1.1:-2228558 | MS.gene26950:CDS |
TCTAGATACTTGATGATGAC+GGG | 0.495878 | 1.1:-2223175 | MS.gene26950:intron |
ATCTATAGAAGGGGAAGTAG+TGG | 0.500748 | 1.1:-2222934 | MS.gene26950:CDS |
AACCACAGTTTGAGAAGTCC+AGG | 0.501105 | 1.1:-2228400 | MS.gene26950:CDS |
AGCTTCTTGGAGGGAAAGCA+GGG | 0.501392 | 1.1:-2220443 | MS.gene26950:CDS |
ATCTACTGGTTTATCCTCAA+CGG | 0.503620 | 1.1:-2224264 | MS.gene26950:CDS |
ATAACCTGATAAGTGTTTCT+GGG | 0.504980 | 1.1:+2225419 | None:intergenic |
CAATGAGGAAAACAATGCTT+TGG | 0.508287 | 1.1:-2225650 | MS.gene26950:intron |
TTCAACTCACAGGATTATGT+AGG | 0.508792 | 1.1:-2229563 | MS.gene26950:intron |
TATGGTTGTAATGAAAGCTA+TGG | 0.509474 | 1.1:-2231635 | MS.gene26950:CDS |
GAAAACACGGAACATCTCTC+TGG | 0.509553 | 1.1:-2226802 | MS.gene26950:CDS |
TTGTGGAACAATTGTCCAGC+AGG | 0.511272 | 1.1:-2222694 | MS.gene26950:CDS |
ACAGAAGGGAAAGCTAGAAA+TGG | 0.512396 | 1.1:-2217621 | MS.gene26950:CDS |
TCAGATAGTCGGCATGTCTG+TGG | 0.514270 | 1.1:+2233363 | None:intergenic |
GTTAGTTACCTTGAGGAACT+CGG | 0.514739 | 1.1:+2234261 | None:intergenic |
GACAACAAAATCAATTGAGC+TGG | 0.514877 | 1.1:-2224233 | MS.gene26950:intron |
ACACAGGTCTGTGGAGCGTG+TGG | 0.514968 | 1.1:-2215441 | MS.gene26950:intron |
GATGACGGGATTGCTGCTCC+TGG | 0.515254 | 1.1:-2223161 | MS.gene26950:CDS |
TGTTGATATTGAATACACTC+TGG | 0.515980 | 1.1:-2233087 | MS.gene26950:CDS |
CCTCAGGCCTCCGAGTGTGA+CGG | 0.516401 | 1.1:+2222856 | None:intergenic |
TGCAATGGGAAAGCAAGCTA+TGG | 0.517305 | 1.1:-2225279 | MS.gene26950:CDS |
GATAAATTCAGTAGCAGACA+TGG | 0.518411 | 1.1:-2222729 | MS.gene26950:CDS |
TTAAGAAAATGGCAGACGAT+TGG | 0.518466 | 1.1:-2229371 | MS.gene26950:CDS |
AAAATGGAAAGTCTTCCTGC+TGG | 0.521267 | 1.1:+2222679 | None:intergenic |
GAAAATGGCAGACGATTGGT+TGG | 0.522174 | 1.1:-2229367 | MS.gene26950:CDS |
GGCTAGGCTGCAAAGCTCTA+GGG | 0.522461 | 1.1:+2228366 | None:intergenic |
ACATGTGCACATCAGGCAAA+AGG | 0.523474 | 1.1:-2230606 | MS.gene26950:intron |
CAGATAGTCGGCATGTCTGT+GGG | 0.523758 | 1.1:+2233364 | None:intergenic |
GAAGATGAGCTTGCAAAACT+TGG | 0.523898 | 1.1:-2232798 | MS.gene26950:intron |
TGGTAAACCGTCAATAATGA+AGG | 0.524344 | 1.1:-2233409 | MS.gene26950:CDS |
AATTCAATAAATCTATAGAA+GGG | 0.525935 | 1.1:-2222944 | MS.gene26950:CDS |
CGTGATTGCTTAATTGCATA+CGG | 0.526176 | 1.1:-2216463 | MS.gene26950:CDS |
GTCAAACAAAAGTATCTGAA+TGG | 0.527638 | 1.1:-2223891 | MS.gene26950:CDS |
ATCTAGATACTTGATGATGA+CGG | 0.528699 | 1.1:-2223176 | MS.gene26950:intron |
ATACTACGTCCAAATAGAGC+TGG | 0.533912 | 1.1:-2223855 | MS.gene26950:CDS |
TACACAACCTGTGTCACTCC+AGG | 0.535701 | 1.1:+2228540 | None:intergenic |
ATATCTCTCTTGGTTTGGAA+AGG | 0.538802 | 1.1:-2228611 | MS.gene26950:CDS |
TTCACCTTCAGGAGTATCAC+AGG | 0.539163 | 1.1:+2228104 | None:intergenic |
AGATTGCAGCTTACCTGGCT+AGG | 0.540800 | 1.1:+2228350 | None:intergenic |
TGAATCCTCATGGGTTTCCA+AGG | 0.543421 | 1.1:-2222626 | MS.gene26950:intron |
GATCTGATTATGAATCCTCA+TGG | 0.543986 | 1.1:-2222636 | MS.gene26950:CDS |
TACTATCTTAGGAGTTTGTG+CGG | 0.545246 | 1.1:-2225474 | MS.gene26950:CDS |
TACAACCATAAGTTGAAAGC+TGG | 0.545299 | 1.1:-2215405 | MS.gene26950:CDS |
AGTAGCAGACATGGGCAGAA+AGG | 0.545438 | 1.1:-2222720 | MS.gene26950:CDS |
TTGTTCAATGTAGTGTGCAA+TGG | 0.545834 | 1.1:-2225294 | MS.gene26950:intron |
GGCATCAGTCGAATGACAGT+TGG | 0.546259 | 1.1:-2220477 | MS.gene26950:intron |
TCCTCTTGTCATTGCTGACA+AGG | 0.546261 | 1.1:-2225852 | MS.gene26950:CDS |
ATGATCGTGTTGAAGCTACT+AGG | 0.546532 | 1.1:-2234049 | MS.gene26950:CDS |
CACATCAGGCAAAAGGTCCC+CGG | 0.547707 | 1.1:-2230599 | MS.gene26950:intron |
TTATGTAGGGAACAAGCGCT+TGG | 0.551211 | 1.1:-2229549 | MS.gene26950:CDS |
ATTTACACAAGCCCAAGCAT+TGG | 0.551643 | 1.1:-2231125 | MS.gene26950:CDS |
TTAGTTACCTTGAGGAACTC+GGG | 0.553710 | 1.1:+2234262 | None:intergenic |
AGACACCTCGGGAAATATGC+AGG | 0.553757 | 1.1:-2223832 | MS.gene26950:intron |
AAGATGATAGAGCTTCTTGG+AGG | 0.555446 | 1.1:-2220453 | MS.gene26950:CDS |
GGATACGATAAGCTTGGAGC+AGG | 0.558146 | 1.1:-2224140 | MS.gene26950:CDS |
TGATGGAAAAGGAGAAGATG+TGG | 0.559156 | 1.1:-2231796 | MS.gene26950:CDS |
TGTAGGCTGTCTAGTCATCA+GGG | 0.559420 | 1.1:+2217641 | None:intergenic |
AATAGAGCTGGAGACACCTC+GGG | 0.560166 | 1.1:-2223843 | MS.gene26950:CDS |
TTGATTATAAAATATCCTCC+AGG | 0.560380 | 1.1:+2232670 | None:intergenic |
AAAATATCCTCCAGGATCGA+GGG | 0.561023 | 1.1:+2232678 | None:intergenic |
AAAATGACAAGAAAGGAATC+GGG | 0.561316 | 1.1:+2226763 | None:intergenic |
CCCTTGTCAGCAATGACAAG+AGG | 0.564644 | 1.1:+2225851 | None:intergenic |
GCAATGGGAAAGCAAGCTAT+GGG | 0.566668 | 1.1:-2225278 | MS.gene26950:CDS |
CTACAGTGGTTATGATATTG+AGG | 0.566807 | 1.1:-2224090 | MS.gene26950:CDS |
ATGCTTCCGATATTAACTTC+GGG | 0.569242 | 1.1:+2232867 | None:intergenic |
GTTGATATTGAATACACTCT+GGG | 0.569759 | 1.1:-2233086 | MS.gene26950:CDS |
GTTTACTTGGCTTCTGATGG+TGG | 0.571419 | 1.1:-2225887 | MS.gene26950:CDS |
AAGAAGTGGTCATGCTGACA+AGG | 0.575298 | 1.1:-2220379 | MS.gene26950:CDS |
TCATGTCACTACTGATGAAG+AGG | 0.576837 | 1.1:-2228046 | MS.gene26950:CDS |
TCAACTCACAGGATTATGTA+GGG | 0.577562 | 1.1:-2229562 | MS.gene26950:intron |
TGTCTATGTCAATGAAAAGC+AGG | 0.577589 | 1.1:-2226534 | MS.gene26950:intron |
ATCTGATTATGAATCCTCAT+GGG | 0.577851 | 1.1:-2222635 | MS.gene26950:CDS |
ATGACTAGACAGCCTACAGA+AGG | 0.581221 | 1.1:-2217636 | MS.gene26950:CDS |
TGTCCCTGTGATACTCCTGA+AGG | 0.585849 | 1.1:-2228108 | MS.gene26950:CDS |
TAAAATATCCTCCAGGATCG+AGG | 0.588272 | 1.1:+2232677 | None:intergenic |
AGTGAAACTCTCGTGAAACA+TGG | 0.588483 | 1.1:-2220268 | MS.gene26950:CDS |
CTACTGCAATGAGGAAGTTG+CGG | 0.588745 | 1.1:-2226586 | MS.gene26950:CDS |
AATTCTAAATAAGGATGCAA+TGG | 0.592120 | 1.1:-2230097 | MS.gene26950:CDS |
AAATTCTTACCCGTCACACT+CGG | 0.597536 | 1.1:-2222866 | MS.gene26950:CDS |
GCACAAGCCTGGAGTGACAC+AGG | 0.598152 | 1.1:-2228547 | MS.gene26950:intron |
TTGGAAAGGACTCTATCGAC+GGG | 0.599936 | 1.1:-2228597 | MS.gene26950:CDS |
AAATAGAGCTGGAGACACCT+CGG | 0.604153 | 1.1:-2223844 | MS.gene26950:CDS |
ACTTATTCCCGAGTTCCTCA+AGG | 0.604668 | 1.1:-2234269 | MS.gene26950:intron |
ATTCAATAAATCTATAGAAG+GGG | 0.607329 | 1.1:-2222943 | MS.gene26950:CDS |
AAACCGTCAATAATGAAGGA+TGG | 0.607542 | 1.1:-2233405 | MS.gene26950:CDS |
AGATGATAGAGCTTCTTGGA+GGG | 0.609479 | 1.1:-2220452 | MS.gene26950:CDS |
AAAGTAAGCTGTCCATCCGT+CGG | 0.611428 | 1.1:+2224287 | None:intergenic |
CCTCTTGTCATTGCTGACAA+GGG | 0.611860 | 1.1:-2225851 | MS.gene26950:CDS |
CACAGGTCTGTGGAGCGTGT+GGG | 0.615516 | 1.1:-2215440 | MS.gene26950:intron |
TTTGGAAAGGACTCTATCGA+CGG | 0.617261 | 1.1:-2228598 | MS.gene26950:CDS |
CTACCAGAAATTAAAACACA+TGG | 0.617916 | 1.1:-2217983 | MS.gene26950:intron |
GAAGGGAAAGCTAGAAATGG+AGG | 0.618532 | 1.1:-2217618 | MS.gene26950:intron |
GGGAAAGCAGGGGTTTCATG+TGG | 0.619087 | 1.1:-2220432 | MS.gene26950:CDS |
TAAGGATGCAATGGATGACA+AGG | 0.622249 | 1.1:-2230088 | MS.gene26950:intron |
TGGCAAGCATAGGAGACCAC+AGG | 0.623814 | 1.1:-2226725 | MS.gene26950:intron |
CTATCTTAGGAGTTTGTGCG+GGG | 0.625949 | 1.1:-2225472 | MS.gene26950:CDS |
TTGTCAACAGCAGAATTCAC+AGG | 0.626290 | 1.1:+2234298 | None:intergenic |
GTTCTATCATTGGCAAGCAT+AGG | 0.627156 | 1.1:-2226735 | MS.gene26950:CDS |
AACAAGTCATCTCTTGATCG+AGG | 0.627507 | 1.1:-2224053 | MS.gene26950:CDS |
CTCGATAAGATGCATGCTCG+TGG | 0.628312 | 1.1:-2217678 | MS.gene26950:CDS |
AAAGCAGATTTCTAACGTGA+AGG | 0.631729 | 1.1:-2215358 | MS.gene26950:CDS |
CCGTCACACTCGGAGGCCTG+AGG | 0.632543 | 1.1:-2222856 | MS.gene26950:intron |
GTTGGATAAGAAGCCGAACA+AGG | 0.632605 | 1.1:-2229349 | MS.gene26950:CDS |
TGTAATGAAAGCTATGGGGA+TGG | 0.636561 | 1.1:-2231629 | MS.gene26950:CDS |
TATAATCAAAGGGAACGAGA+AGG | 0.637087 | 1.1:-2232656 | MS.gene26950:intron |
TGTCACTACTGATGAAGAGG+AGG | 0.638150 | 1.1:-2228043 | MS.gene26950:CDS |
AACATACCAGGGAAATCAGG+GGG | 0.638830 | 1.1:+2228019 | None:intergenic |
GAAGCATGCCTATTATGTTG+CGG | 0.639708 | 1.1:-2232851 | MS.gene26950:CDS |
AAACATGGCTTCAGTTACAG+TGG | 0.645725 | 1.1:-2220253 | MS.gene26950:CDS |
ATAACCTAAGAAAAGAAACA+AGG | 0.646355 | 1.1:-2233055 | MS.gene26950:CDS |
CCTACGTTCGATCAGATAGT+CGG | 0.651130 | 1.1:+2233352 | None:intergenic |
AACATGGCTTCAGTTACAGT+GGG | 0.651201 | 1.1:-2220252 | MS.gene26950:CDS |
ACTCCTGAAGGTGAAGATTG+CGG | 0.653104 | 1.1:-2228096 | MS.gene26950:CDS |
GGGGAATATAGCATATAACC+AGG | 0.656646 | 1.1:-2225258 | MS.gene26950:intron |
GTTGTCAGCAAAGGCCGTTG+AGG | 0.657654 | 1.1:+2224250 | None:intergenic |
GGCACCCATATATTTATCTG+AGG | 0.657889 | 1.1:-2234028 | MS.gene26950:intron |
TAACCTAAGAAAAGAAACAA+GGG | 0.661237 | 1.1:-2233054 | MS.gene26950:intron |
AAACATACCAGGGAAATCAG+GGG | 0.661598 | 1.1:+2228018 | None:intergenic |
AAATATCCTCCAGGATCGAG+GGG | 0.671157 | 1.1:+2232679 | None:intergenic |
GTAGCTGTAATGAGCTACAG+TGG | 0.671807 | 1.1:-2224104 | MS.gene26950:CDS |
TTCTTACCCGTCACACTCGG+AGG | 0.674877 | 1.1:-2222863 | MS.gene26950:CDS |
TATCACCTGCATATTTCCCG+AGG | 0.675031 | 1.1:+2223827 | None:intergenic |
TGACTAGACAGCCTACAGAA+GGG | 0.676482 | 1.1:-2217635 | MS.gene26950:CDS |
GAGAAGTCCAGGAAAGTAAG+CGG | 0.679479 | 1.1:-2228389 | MS.gene26950:CDS |
TATTACCTTGGAAACCCATG+AGG | 0.679988 | 1.1:+2222621 | None:intergenic |
ATAAATTCAGTAGCAGACAT+GGG | 0.686101 | 1.1:-2222728 | MS.gene26950:CDS |
TCACCTTCAGGAGTATCACA+GGG | 0.711107 | 1.1:+2228105 | None:intergenic |
ACATACCAGGGAAATCAGGG+GGG | 0.714434 | 1.1:+2228020 | None:intergenic |
TGAGTATCTTGATGTCAATG+AGG | 0.718554 | 1.1:-2225665 | MS.gene26950:CDS |
GCTTCTTGGAGGGAAAGCAG+GGG | 0.723235 | 1.1:-2220442 | MS.gene26950:CDS |
GAGTGTCCCCTCGATCCTGG+AGG | 0.724844 | 1.1:-2232685 | MS.gene26950:CDS |
CAATGGGAAAGCAAGCTATG+GGG | 0.735564 | 1.1:-2225277 | MS.gene26950:CDS |
GCTGCCATGTTAGAAAACCG+GGG | 0.755143 | 1.1:+2230582 | None:intergenic |
ATAAGTAGAAAACTGTAACG+AGG | 0.757109 | 1.1:+2231568 | None:intergenic |
TGGTTGTAATGAAAGCTATG+GGG | 0.784001 | 1.1:-2231633 | MS.gene26950:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 2215060 | 2234344 | 2215060 | ID=MS.gene26950 |
chr1.1 | mRNA | 2215060 | 2234344 | 2215060 | ID=MS.gene26950.t1;Parent=MS.gene26950 |
chr1.1 | exon | 2234270 | 2234344 | 2234270 | ID=MS.gene26950.t1.exon1;Parent=MS.gene26950.t1 |
chr1.1 | CDS | 2234270 | 2234344 | 2234270 | ID=cds.MS.gene26950.t1;Parent=MS.gene26950.t1 |
chr1.1 | exon | 2234029 | 2234150 | 2234029 | ID=MS.gene26950.t1.exon2;Parent=MS.gene26950.t1 |
chr1.1 | CDS | 2234029 | 2234150 | 2234029 | ID=cds.MS.gene26950.t1;Parent=MS.gene26950.t1 |
chr1.1 | exon | 2233357 | 2233449 | 2233357 | ID=MS.gene26950.t1.exon3;Parent=MS.gene26950.t1 |
chr1.1 | CDS | 2233357 | 2233449 | 2233357 | ID=cds.MS.gene26950.t1;Parent=MS.gene26950.t1 |
chr1.1 | exon | 2233055 | 2233127 | 2233055 | ID=MS.gene26950.t1.exon4;Parent=MS.gene26950.t1 |
chr1.1 | CDS | 2233055 | 2233127 | 2233055 | ID=cds.MS.gene26950.t1;Parent=MS.gene26950.t1 |
chr1.1 | exon | 2232799 | 2232889 | 2232799 | ID=MS.gene26950.t1.exon5;Parent=MS.gene26950.t1 |
chr1.1 | CDS | 2232799 | 2232889 | 2232799 | ID=cds.MS.gene26950.t1;Parent=MS.gene26950.t1 |
chr1.1 | exon | 2232657 | 2232709 | 2232657 | ID=MS.gene26950.t1.exon6;Parent=MS.gene26950.t1 |
chr1.1 | CDS | 2232657 | 2232709 | 2232657 | ID=cds.MS.gene26950.t1;Parent=MS.gene26950.t1 |
chr1.1 | exon | 2232239 | 2232303 | 2232239 | ID=MS.gene26950.t1.exon7;Parent=MS.gene26950.t1 |
chr1.1 | CDS | 2232239 | 2232303 | 2232239 | ID=cds.MS.gene26950.t1;Parent=MS.gene26950.t1 |
chr1.1 | exon | 2231769 | 2231874 | 2231769 | ID=MS.gene26950.t1.exon8;Parent=MS.gene26950.t1 |
chr1.1 | CDS | 2231769 | 2231874 | 2231769 | ID=cds.MS.gene26950.t1;Parent=MS.gene26950.t1 |
chr1.1 | exon | 2231555 | 2231665 | 2231555 | ID=MS.gene26950.t1.exon9;Parent=MS.gene26950.t1 |
chr1.1 | CDS | 2231555 | 2231665 | 2231555 | ID=cds.MS.gene26950.t1;Parent=MS.gene26950.t1 |
chr1.1 | exon | 2231108 | 2231167 | 2231108 | ID=MS.gene26950.t1.exon10;Parent=MS.gene26950.t1 |
chr1.1 | CDS | 2231108 | 2231167 | 2231108 | ID=cds.MS.gene26950.t1;Parent=MS.gene26950.t1 |
chr1.1 | exon | 2230575 | 2230613 | 2230575 | ID=MS.gene26950.t1.exon11;Parent=MS.gene26950.t1 |
chr1.1 | CDS | 2230575 | 2230613 | 2230575 | ID=cds.MS.gene26950.t1;Parent=MS.gene26950.t1 |
chr1.1 | exon | 2230354 | 2230404 | 2230354 | ID=MS.gene26950.t1.exon12;Parent=MS.gene26950.t1 |
chr1.1 | CDS | 2230354 | 2230404 | 2230354 | ID=cds.MS.gene26950.t1;Parent=MS.gene26950.t1 |
chr1.1 | exon | 2230089 | 2230187 | 2230089 | ID=MS.gene26950.t1.exon13;Parent=MS.gene26950.t1 |
chr1.1 | CDS | 2230089 | 2230187 | 2230089 | ID=cds.MS.gene26950.t1;Parent=MS.gene26950.t1 |
chr1.1 | exon | 2229514 | 2229573 | 2229514 | ID=MS.gene26950.t1.exon14;Parent=MS.gene26950.t1 |
chr1.1 | CDS | 2229514 | 2229573 | 2229514 | ID=cds.MS.gene26950.t1;Parent=MS.gene26950.t1 |
chr1.1 | exon | 2229329 | 2229421 | 2229329 | ID=MS.gene26950.t1.exon15;Parent=MS.gene26950.t1 |
chr1.1 | CDS | 2229329 | 2229421 | 2229329 | ID=cds.MS.gene26950.t1;Parent=MS.gene26950.t1 |
chr1.1 | exon | 2228548 | 2228658 | 2228548 | ID=MS.gene26950.t1.exon16;Parent=MS.gene26950.t1 |
chr1.1 | CDS | 2228548 | 2228658 | 2228548 | ID=cds.MS.gene26950.t1;Parent=MS.gene26950.t1 |
chr1.1 | exon | 2228364 | 2228474 | 2228364 | ID=MS.gene26950.t1.exon17;Parent=MS.gene26950.t1 |
chr1.1 | CDS | 2228364 | 2228474 | 2228364 | ID=cds.MS.gene26950.t1;Parent=MS.gene26950.t1 |
chr1.1 | exon | 2228026 | 2228142 | 2228026 | ID=MS.gene26950.t1.exon18;Parent=MS.gene26950.t1 |
chr1.1 | CDS | 2228026 | 2228142 | 2228026 | ID=cds.MS.gene26950.t1;Parent=MS.gene26950.t1 |
chr1.1 | exon | 2226726 | 2226842 | 2226726 | ID=MS.gene26950.t1.exon19;Parent=MS.gene26950.t1 |
chr1.1 | CDS | 2226726 | 2226842 | 2226726 | ID=cds.MS.gene26950.t1;Parent=MS.gene26950.t1 |
chr1.1 | exon | 2226535 | 2226615 | 2226535 | ID=MS.gene26950.t1.exon20;Parent=MS.gene26950.t1 |
chr1.1 | CDS | 2226535 | 2226615 | 2226535 | ID=cds.MS.gene26950.t1;Parent=MS.gene26950.t1 |
chr1.1 | exon | 2225811 | 2225915 | 2225811 | ID=MS.gene26950.t1.exon21;Parent=MS.gene26950.t1 |
chr1.1 | CDS | 2225811 | 2225915 | 2225811 | ID=cds.MS.gene26950.t1;Parent=MS.gene26950.t1 |
chr1.1 | exon | 2225651 | 2225731 | 2225651 | ID=MS.gene26950.t1.exon22;Parent=MS.gene26950.t1 |
chr1.1 | CDS | 2225651 | 2225731 | 2225651 | ID=cds.MS.gene26950.t1;Parent=MS.gene26950.t1 |
chr1.1 | exon | 2225424 | 2225555 | 2225424 | ID=MS.gene26950.t1.exon23;Parent=MS.gene26950.t1 |
chr1.1 | CDS | 2225424 | 2225555 | 2225424 | ID=cds.MS.gene26950.t1;Parent=MS.gene26950.t1 |
chr1.1 | exon | 2225259 | 2225303 | 2225259 | ID=MS.gene26950.t1.exon24;Parent=MS.gene26950.t1 |
chr1.1 | CDS | 2225259 | 2225303 | 2225259 | ID=cds.MS.gene26950.t1;Parent=MS.gene26950.t1 |
chr1.1 | exon | 2224234 | 2224311 | 2224234 | ID=MS.gene26950.t1.exon25;Parent=MS.gene26950.t1 |
chr1.1 | CDS | 2224234 | 2224311 | 2224234 | ID=cds.MS.gene26950.t1;Parent=MS.gene26950.t1 |
chr1.1 | exon | 2224026 | 2224165 | 2224026 | ID=MS.gene26950.t1.exon26;Parent=MS.gene26950.t1 |
chr1.1 | CDS | 2224026 | 2224165 | 2224026 | ID=cds.MS.gene26950.t1;Parent=MS.gene26950.t1 |
chr1.1 | exon | 2223833 | 2223923 | 2223833 | ID=MS.gene26950.t1.exon27;Parent=MS.gene26950.t1 |
chr1.1 | CDS | 2223833 | 2223923 | 2223833 | ID=cds.MS.gene26950.t1;Parent=MS.gene26950.t1 |
chr1.1 | exon | 2223071 | 2223192 | 2223071 | ID=MS.gene26950.t1.exon28;Parent=MS.gene26950.t1 |
chr1.1 | CDS | 2223071 | 2223192 | 2223071 | ID=cds.MS.gene26950.t1;Parent=MS.gene26950.t1 |
chr1.1 | exon | 2222857 | 2222989 | 2222857 | ID=MS.gene26950.t1.exon29;Parent=MS.gene26950.t1 |
chr1.1 | CDS | 2222857 | 2222989 | 2222857 | ID=cds.MS.gene26950.t1;Parent=MS.gene26950.t1 |
chr1.1 | exon | 2222627 | 2222757 | 2222627 | ID=MS.gene26950.t1.exon30;Parent=MS.gene26950.t1 |
chr1.1 | CDS | 2222627 | 2222757 | 2222627 | ID=cds.MS.gene26950.t1;Parent=MS.gene26950.t1 |
chr1.1 | exon | 2220366 | 2220491 | 2220366 | ID=MS.gene26950.t1.exon31;Parent=MS.gene26950.t1 |
chr1.1 | CDS | 2220366 | 2220491 | 2220366 | ID=cds.MS.gene26950.t1;Parent=MS.gene26950.t1 |
chr1.1 | exon | 2220233 | 2220288 | 2220233 | ID=MS.gene26950.t1.exon32;Parent=MS.gene26950.t1 |
chr1.1 | CDS | 2220233 | 2220288 | 2220233 | ID=cds.MS.gene26950.t1;Parent=MS.gene26950.t1 |
chr1.1 | exon | 2217984 | 2218054 | 2217984 | ID=MS.gene26950.t1.exon33;Parent=MS.gene26950.t1 |
chr1.1 | CDS | 2217984 | 2218054 | 2217984 | ID=cds.MS.gene26950.t1;Parent=MS.gene26950.t1 |
chr1.1 | exon | 2217619 | 2217703 | 2217619 | ID=MS.gene26950.t1.exon34;Parent=MS.gene26950.t1 |
chr1.1 | CDS | 2217619 | 2217703 | 2217619 | ID=cds.MS.gene26950.t1;Parent=MS.gene26950.t1 |
chr1.1 | exon | 2216405 | 2216508 | 2216405 | ID=MS.gene26950.t1.exon35;Parent=MS.gene26950.t1 |
chr1.1 | CDS | 2216405 | 2216508 | 2216405 | ID=cds.MS.gene26950.t1;Parent=MS.gene26950.t1 |
chr1.1 | exon | 2215329 | 2215457 | 2215329 | ID=MS.gene26950.t1.exon36;Parent=MS.gene26950.t1 |
chr1.1 | CDS | 2215329 | 2215457 | 2215329 | ID=cds.MS.gene26950.t1;Parent=MS.gene26950.t1 |
chr1.1 | exon | 2215060 | 2215116 | 2215060 | ID=MS.gene26950.t1.exon37;Parent=MS.gene26950.t1 |
chr1.1 | CDS | 2215060 | 2215116 | 2215060 | ID=cds.MS.gene26950.t1;Parent=MS.gene26950.t1 |
Gene Sequence |
Protein sequence |