Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27326.t1 | KEH18521.1 | 84.4 | 1121 | 167 | 4 | 1 | 1119 | 872 | 1986 | 0.00E+00 | 1915.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27326.t1 | F4KD38 | 72.4 | 1132 | 296 | 5 | 1 | 1119 | 17 | 1145 | 0.0e+00 | 1651.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27326.t1 | A0A072TMT8 | 84.4 | 1121 | 167 | 4 | 1 | 1119 | 872 | 1986 | 0.0e+00 | 1915.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27326.t1 | MTR_8g023445 | 84.389 | 1121 | 167 | 4 | 1 | 1119 | 872 | 1986 | 0.0 | 1959 |
MS.gene27326.t1 | MTR_1g023500 | 37.586 | 1168 | 635 | 23 | 17 | 1119 | 30 | 1168 | 0.0 | 730 |
MS.gene27326.t1 | MTR_3g105990 | 30.924 | 1190 | 659 | 38 | 23 | 1119 | 53 | 1172 | 8.24e-151 | 482 |
MS.gene27326.t1 | MTR_1g022135 | 77.860 | 271 | 25 | 3 | 78 | 346 | 1 | 238 | 2.66e-133 | 407 |
MS.gene27326.t1 | MTR_1g022135 | 84.906 | 53 | 8 | 0 | 1067 | 1119 | 229 | 281 | 1.73e-22 | 99.8 |
MS.gene27326.t1 | MTR_4g124030 | 27.773 | 1217 | 681 | 38 | 23 | 1117 | 25 | 1165 | 2.49e-114 | 383 |
MS.gene27326.t1 | MTR_0002s0510 | 24.608 | 638 | 415 | 18 | 465 | 1071 | 467 | 1069 | 1.83e-40 | 164 |
MS.gene27326.t1 | MTR_1g022125 | 95.588 | 68 | 3 | 0 | 1 | 68 | 1 | 68 | 6.02e-40 | 142 |
MS.gene27326.t1 | MTR_4g051130 | 26.562 | 512 | 280 | 12 | 647 | 1071 | 496 | 998 | 1.72e-34 | 144 |
MS.gene27326.t1 | MTR_0189s0050 | 26.305 | 498 | 279 | 21 | 23 | 465 | 51 | 515 | 8.86e-33 | 134 |
MS.gene27326.t1 | MTR_8g023440 | 74.510 | 51 | 13 | 0 | 474 | 524 | 102 | 152 | 1.26e-16 | 79.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27326.t1 | AT5G45140 | 72.438 | 1132 | 296 | 5 | 1 | 1119 | 17 | 1145 | 0.0 | 1694 |
MS.gene27326.t1 | AT5G45140 | 72.438 | 1132 | 296 | 5 | 1 | 1119 | 17 | 1145 | 0.0 | 1694 |
MS.gene27326.t1 | AT5G45140 | 70.234 | 813 | 230 | 2 | 1 | 802 | 17 | 828 | 0.0 | 1172 |
MS.gene27326.t1 | AT4G21710 | 36.815 | 1168 | 648 | 21 | 15 | 1119 | 25 | 1165 | 0.0 | 716 |
MS.gene27326.t1 | AT3G23780 | 29.135 | 1191 | 704 | 30 | 3 | 1119 | 32 | 1156 | 1.34e-137 | 446 |
MS.gene27326.t1 | AT3G23780 | 29.135 | 1191 | 704 | 30 | 3 | 1119 | 32 | 1156 | 1.34e-137 | 446 |
MS.gene27326.t1 | AT3G18090 | 30.403 | 1092 | 644 | 27 | 90 | 1119 | 2 | 1039 | 2.69e-133 | 432 |
MS.gene27326.t1 | AT1G29940 | 27.227 | 1201 | 733 | 35 | 10 | 1117 | 3 | 1155 | 6.79e-108 | 365 |
MS.gene27326.t1 | AT3G18090 | 28.872 | 904 | 546 | 23 | 90 | 948 | 2 | 853 | 1.47e-92 | 317 |
MS.gene27326.t1 | AT3G18090 | 28.872 | 904 | 546 | 23 | 90 | 948 | 2 | 853 | 1.52e-92 | 317 |
MS.gene27326.t1 | ATCG00190 | 29.380 | 371 | 228 | 8 | 728 | 1071 | 650 | 1013 | 7.04e-34 | 142 |
Find 229 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTATTACAGTGCTATATTT+TGG | 0.104611 | 1.2:-2532257 | MS.gene27326:intron |
CTGCTCCTGGCGAAATTATT+AGG | 0.208803 | 1.2:-2528570 | MS.gene27326:CDS |
GTTATCATTTATAAGTTCTT+TGG | 0.212782 | 1.2:-2533872 | MS.gene27326:CDS |
GATAACCTGATAAGTGTTTC+TGG | 0.217020 | 1.2:+2530840 | None:intergenic |
CAATCAATTGTACAATTTCT+TGG | 0.219014 | 1.2:+2537030 | None:intergenic |
CAAATACCTTTCTCAGAAAA+TGG | 0.223537 | 1.2:+2528085 | None:intergenic |
TGTCTAGTCATCAGGGTCTT+AGG | 0.225042 | 1.2:+2523074 | None:intergenic |
TTTCATTATGGAAGTGCTTT+TGG | 0.226653 | 1.2:-2525828 | MS.gene27326:CDS |
GGGAAAGACTTCATTTATTC+AGG | 0.231341 | 1.2:-2525655 | MS.gene27326:intron |
GTGTGTTCGTAGCTTCTTAA+TGG | 0.247710 | 1.2:-2534079 | MS.gene27326:intron |
TATCCAATAGGTTCCTCTTA+TGG | 0.266141 | 1.2:-2537084 | MS.gene27326:intron |
TCATCATATGAAAGAGTTAA+AGG | 0.266666 | 1.2:-2531233 | MS.gene27326:intron |
TTGCGGACTAGTAAAGAATT+TGG | 0.267641 | 1.2:-2533510 | MS.gene27326:CDS |
CCATACCTCAGATAAATATA+TGG | 0.276549 | 1.2:+2539445 | None:intergenic |
GACAGATAAAATTAAGAAAA+TGG | 0.276563 | 1.2:-2534813 | MS.gene27326:CDS |
AGGTACCAGCTTTCAACTTA+TGG | 0.276964 | 1.2:+2520826 | None:intergenic |
AATGGATGCAATTCTAAATA+AGG | 0.278220 | 1.2:-2535546 | MS.gene27326:CDS |
TTGCGGAGAGCTTGTCTAAT+TGG | 0.289695 | 1.2:-2531996 | MS.gene27326:CDS |
TCATGTGGTAAATTTCATTA+TGG | 0.318497 | 1.2:-2525840 | MS.gene27326:CDS |
CTGTAGGCTGTCTAGTCATC+AGG | 0.319180 | 1.2:+2523066 | None:intergenic |
TCTAGGGCCGCTTACTTTCC+TGG | 0.323783 | 1.2:+2533813 | None:intergenic |
CAAACTCCTAAGATAGTAAA+AGG | 0.327644 | 1.2:+2530901 | None:intergenic |
TCGGCCGAAATGTATATATC+TGG | 0.333757 | 1.2:-2535588 | MS.gene27326:CDS |
CTACAACTAACTTGCCTGAT+AGG | 0.333997 | 1.2:-2528492 | MS.gene27326:intron |
TTTAATTTCTGGTAGTATAT+TGG | 0.344466 | 1.2:+2523417 | None:intergenic |
GTGGTGTCTCCAGCTCTATT+TGG | 0.345276 | 1.2:+2529268 | None:intergenic |
CAAGAAATTGTACAATTGAT+TGG | 0.346455 | 1.2:-2537029 | MS.gene27326:CDS |
GTGGTTTGACTCTTGTCATT+TGG | 0.349163 | 1.2:+2533848 | None:intergenic |
TCATCTCTTGATCGAGGCTT+TGG | 0.352997 | 1.2:-2529469 | MS.gene27326:CDS |
AAATGTTAAACGAACCTATC+AGG | 0.353953 | 1.2:+2528478 | None:intergenic |
CAATGATATCTCTCTTGGTT+TGG | 0.356316 | 1.2:-2534047 | MS.gene27326:CDS |
AGGATTGGTGAAGCAACATT+TGG | 0.357035 | 1.2:-2539545 | MS.gene27326:CDS |
TGCATGCAAACTCTTGATTC+AGG | 0.362458 | 1.2:-2520754 | MS.gene27326:intron |
CAACAGCTCCGCAACATAAT+AGG | 0.364918 | 1.2:+2538271 | None:intergenic |
CAGTGATTCTTATGAAGTTC+AGG | 0.374944 | 1.2:-2521830 | MS.gene27326:intron |
AAATTCAATAAATCTATAGA+AGG | 0.375466 | 1.2:-2528367 | MS.gene27326:CDS |
CAGCTGCCATGTTAGAAAAC+CGG | 0.379815 | 1.2:+2535983 | None:intergenic |
TTATCATTTATAAGTTCTTT+GGG | 0.380340 | 1.2:-2533871 | MS.gene27326:CDS |
GATAAGTGTTTCTGGGAGAT+TGG | 0.380730 | 1.2:+2530848 | None:intergenic |
AATTTATTCTTCGTATCAAC+TGG | 0.385227 | 1.2:+2528517 | None:intergenic |
TCTTTCTATCCAGTGGATAT+CGG | 0.385403 | 1.2:-2528402 | MS.gene27326:intron |
TCCATTCTTACAAGATGAAC+AGG | 0.389454 | 1.2:+2520806 | None:intergenic |
TGAAACATACCAGGGAAATC+AGG | 0.395884 | 1.2:+2533447 | None:intergenic |
GTCTAGTCATCAGGGTCTTA+GGG | 0.397248 | 1.2:+2523075 | None:intergenic |
CTATAGATTGCTTTATATGA+AGG | 0.398166 | 1.2:-2530961 | MS.gene27326:intron |
ATGTCAAACTTAGCCTTGTT+CGG | 0.400793 | 1.2:+2534767 | None:intergenic |
GCTTTCATTACAACCATAAG+AGG | 0.404387 | 1.2:+2537071 | None:intergenic |
TTCTAACATGGCAGCTGAAA+AGG | 0.405727 | 1.2:-2535977 | MS.gene27326:intron |
AGTAGTTCTTTACAATGATA+AGG | 0.406416 | 1.2:-2528329 | MS.gene27326:CDS |
AGTCCGCAATCTTCACCTTC+AGG | 0.407583 | 1.2:+2533524 | None:intergenic |
AACAAGCGCTTGGAGTTATC+TGG | 0.407907 | 1.2:-2534970 | MS.gene27326:CDS |
TGTGGAGCGTGTGGGTTGTT+AGG | 0.408812 | 1.2:-2520858 | MS.gene27326:CDS |
ACAGCCAGATATATACATTT+CGG | 0.420426 | 1.2:+2535584 | None:intergenic |
GGCGAGTGTCCCCTCGATCC+TGG | 0.422010 | 1.2:-2538116 | MS.gene27326:CDS |
GGAAAGATGATAGAGCTTCT+TGG | 0.422262 | 1.2:-2525879 | MS.gene27326:CDS |
ACCTGTTCATCTTGTAAGAA+TGG | 0.424245 | 1.2:-2520807 | MS.gene27326:CDS |
ATGTCAATTACCTCAATAGA+TGG | 0.427719 | 1.2:+2536975 | None:intergenic |
TTCCTGGACTTCTCAAACTG+TGG | 0.433302 | 1.2:+2533829 | None:intergenic |
TGTATCAATGATATCTCTCT+TGG | 0.438966 | 1.2:-2534052 | MS.gene27326:CDS |
TAGAGCTTTGCAGCCTAGCC+AGG | 0.441570 | 1.2:-2533794 | MS.gene27326:intron |
TGGGAGATTGGTTATGATGA+GGG | 0.444575 | 1.2:+2530860 | None:intergenic |
TCTACTTATGCCATCTATTG+AGG | 0.445335 | 1.2:-2536985 | MS.gene27326:intron |
AGGTCTACGAGTTGGAGAAA+TGG | 0.449773 | 1.2:-2521914 | MS.gene27326:CDS |
GCCGTTGCATAGTTATGAAA+AGG | 0.453576 | 1.2:-2529447 | MS.gene27326:intron |
ATCTCCCAGAAACACTTATC+AGG | 0.454819 | 1.2:-2530845 | MS.gene27326:intron |
TGTGTTTACTTGGCTTCTGA+TGG | 0.455837 | 1.2:-2531313 | MS.gene27326:CDS |
TTTCTAGCTTTCCCTTCTGT+AGG | 0.456586 | 1.2:+2523050 | None:intergenic |
TTACCATCCTTCATTATTGA+CGG | 0.462008 | 1.2:+2538824 | None:intergenic |
GAGCTTCTTGGAGGGAAAGC+AGG | 0.464015 | 1.2:-2525867 | MS.gene27326:CDS |
ATCAAGAGTTTGCATGCATA+TGG | 0.465804 | 1.2:+2520759 | None:intergenic |
TGAGGATTCATAATCAGATC+TGG | 0.467678 | 1.2:+2528061 | None:intergenic |
AATCAAGGTACTCCAATGCT+TGG | 0.471999 | 1.2:+2536544 | None:intergenic |
GATTGGTTATGATGAGGGTA+TGG | 0.474686 | 1.2:+2530865 | None:intergenic |
TGTTCAATGTAGTGTGCAAT+GGG | 0.476032 | 1.2:-2530715 | MS.gene27326:intron |
GGACAGCTTACTTTATCTAC+TGG | 0.476036 | 1.2:-2529700 | MS.gene27326:CDS |
TATTCAATATCAACAGTTAT+CGG | 0.476505 | 1.2:+2538517 | None:intergenic |
AAGATGCATGCTCGTGGTAG+TGG | 0.477247 | 1.2:-2523098 | MS.gene27326:CDS |
CATGCTTCCGATATTAACTT+CGG | 0.480069 | 1.2:+2538294 | None:intergenic |
AGCTGCCATGTTAGAAAACC+GGG | 0.480191 | 1.2:+2535984 | None:intergenic |
CTGACAAGGTTGAAACCATA+AGG | 0.481373 | 1.2:-2525788 | MS.gene27326:intron |
CCGCAGCCCGAAGTTAATAT+CGG | 0.483062 | 1.2:-2538301 | MS.gene27326:intron |
TGGCTAGGCTGCAAAGCTCT+AGG | 0.483789 | 1.2:+2533796 | None:intergenic |
TAGGTTGGATACGATAAGCT+TGG | 0.483994 | 1.2:-2529568 | MS.gene27326:CDS |
ATGGTTGTAATGAAAGCTAT+GGG | 0.484883 | 1.2:-2537065 | MS.gene27326:CDS |
CTGAACTTCATAAGAATCAC+TGG | 0.486106 | 1.2:+2521831 | None:intergenic |
TGTTATGATGAGACGCATAA+TGG | 0.487425 | 1.2:-2535564 | MS.gene27326:CDS |
CATACCTCAGATAAATATAT+GGG | 0.487479 | 1.2:+2539446 | None:intergenic |
CTGGGAGATTGGTTATGATG+AGG | 0.488676 | 1.2:+2530859 | None:intergenic |
CTCAGGCCTCCGAGTGTGAC+GGG | 0.489424 | 1.2:+2528279 | None:intergenic |
CATGGGCAGAAAGGTGTTTG+TGG | 0.491253 | 1.2:-2528133 | MS.gene27326:CDS |
ATCAAGGTACTCCAATGCTT+GGG | 0.493087 | 1.2:+2536545 | None:intergenic |
ACTATCTTAGGAGTTTGTGC+GGG | 0.493188 | 1.2:-2530895 | MS.gene27326:CDS |
GAAACATACCAGGGAAATCA+GGG | 0.494674 | 1.2:+2533448 | None:intergenic |
AGGTTCAGGATGCACAAGCC+TGG | 0.495123 | 1.2:-2533989 | MS.gene27326:CDS |
TCTAGATACTTGATGATGAC+GGG | 0.495878 | 1.2:-2528597 | MS.gene27326:intron |
ATCTATAGAAGGGGAAGTAG+TGG | 0.500748 | 1.2:-2528356 | MS.gene27326:CDS |
AACCACAGTTTGAGAAGTCC+AGG | 0.501105 | 1.2:-2533831 | MS.gene27326:CDS |
AGCTTCTTGGAGGGAAAGCA+GGG | 0.501392 | 1.2:-2525866 | MS.gene27326:CDS |
ATCTACTGGTTTATCCTCAA+CGG | 0.503620 | 1.2:-2529686 | MS.gene27326:CDS |
ATAACCTGATAAGTGTTTCT+GGG | 0.504980 | 1.2:+2530841 | None:intergenic |
CAATGAGGAAAACAATGCTT+TGG | 0.508287 | 1.2:-2531073 | MS.gene27326:intron |
TTCAACTCACAGGATTATGT+AGG | 0.508792 | 1.2:-2534994 | MS.gene27326:intron |
TATGGTTGTAATGAAAGCTA+TGG | 0.509474 | 1.2:-2537066 | MS.gene27326:CDS |
GAAAACACGGAACATCTCTC+TGG | 0.509553 | 1.2:-2532229 | MS.gene27326:CDS |
TTGTGGAACAATTGTCCAGC+AGG | 0.511272 | 1.2:-2528116 | MS.gene27326:CDS |
ACAGAAGGGAAAGCTAGAAA+TGG | 0.512396 | 1.2:-2523047 | MS.gene27326:CDS |
TCAGATAGTCGGCATGTCTG+TGG | 0.514270 | 1.2:+2538785 | None:intergenic |
GTTAGTTACCTTGAGGAACT+CGG | 0.514739 | 1.2:+2539683 | None:intergenic |
GACAACAAAATCAATTGAGC+TGG | 0.514877 | 1.2:-2529655 | MS.gene27326:intron |
ACACAGGTCTGTGGAGCGTG+TGG | 0.514968 | 1.2:-2520867 | MS.gene27326:intron |
GATGACGGGATTGCTGCTCC+TGG | 0.515254 | 1.2:-2528583 | MS.gene27326:CDS |
TGTTGATATTGAATACACTC+TGG | 0.515980 | 1.2:-2538509 | MS.gene27326:CDS |
CCTCAGGCCTCCGAGTGTGA+CGG | 0.516401 | 1.2:+2528278 | None:intergenic |
TGCAATGGGAAAGCAAGCTA+TGG | 0.517305 | 1.2:-2530701 | MS.gene27326:CDS |
GATAAATTCAGTAGCAGACA+TGG | 0.518411 | 1.2:-2528151 | MS.gene27326:CDS |
TTAAGAAAATGGCAGACGAT+TGG | 0.518466 | 1.2:-2534802 | MS.gene27326:CDS |
AAAATGGAAAGTCTTCCTGC+TGG | 0.521267 | 1.2:+2528101 | None:intergenic |
GAAAATGGCAGACGATTGGT+TGG | 0.522174 | 1.2:-2534798 | MS.gene27326:CDS |
GGCTAGGCTGCAAAGCTCTA+GGG | 0.522461 | 1.2:+2533797 | None:intergenic |
ACATGTGCACATCAGGCAAA+AGG | 0.523474 | 1.2:-2536009 | MS.gene27326:intron |
CAGATAGTCGGCATGTCTGT+GGG | 0.523758 | 1.2:+2538786 | None:intergenic |
GAAGATGAGCTTGCAAAACT+TGG | 0.523898 | 1.2:-2538226 | MS.gene27326:intron |
TGGTAAACCGTCAATAATGA+AGG | 0.524344 | 1.2:-2538831 | MS.gene27326:CDS |
AATTCAATAAATCTATAGAA+GGG | 0.525935 | 1.2:-2528366 | MS.gene27326:CDS |
CGTGATTGCTTAATTGCATA+CGG | 0.526176 | 1.2:-2521889 | MS.gene27326:CDS |
GTCAAACAAAAGTATCTGAA+TGG | 0.527638 | 1.2:-2529313 | MS.gene27326:CDS |
ATCTAGATACTTGATGATGA+CGG | 0.528699 | 1.2:-2528598 | MS.gene27326:intron |
ATACTACGTCCAAATAGAGC+TGG | 0.533912 | 1.2:-2529277 | MS.gene27326:CDS |
TACACAACCTGTGTCACTCC+AGG | 0.535701 | 1.2:+2533971 | None:intergenic |
ATATCTCTCTTGGTTTGGAA+AGG | 0.538802 | 1.2:-2534042 | MS.gene27326:CDS |
TTCACCTTCAGGAGTATCAC+AGG | 0.539163 | 1.2:+2533535 | None:intergenic |
AGATTGCAGCTTACCTGGCT+AGG | 0.540800 | 1.2:+2533781 | None:intergenic |
TGAATCCTCATGGGTTTCCA+AGG | 0.543421 | 1.2:-2528048 | MS.gene27326:intron |
GATCTGATTATGAATCCTCA+TGG | 0.543986 | 1.2:-2528058 | MS.gene27326:CDS |
TACTATCTTAGGAGTTTGTG+CGG | 0.545246 | 1.2:-2530896 | MS.gene27326:CDS |
TACAACCATAAGTTGAAAGC+TGG | 0.545299 | 1.2:-2520831 | MS.gene27326:CDS |
AGTAGCAGACATGGGCAGAA+AGG | 0.545438 | 1.2:-2528142 | MS.gene27326:CDS |
TTGTTCAATGTAGTGTGCAA+TGG | 0.545834 | 1.2:-2530716 | MS.gene27326:intron |
GGCATCAGTCGAATGACAGT+TGG | 0.546259 | 1.2:-2525900 | MS.gene27326:intron |
TCCTCTTGTCATTGCTGACA+AGG | 0.546261 | 1.2:-2531275 | MS.gene27326:CDS |
ATGATCGTGTTGAAGCTACT+AGG | 0.546532 | 1.2:-2539471 | MS.gene27326:CDS |
CACATCAGGCAAAAGGTCCC+CGG | 0.547707 | 1.2:-2536002 | MS.gene27326:intron |
TTATGTAGGGAACAAGCGCT+TGG | 0.551211 | 1.2:-2534980 | MS.gene27326:CDS |
ATTTACACAAGCCCAAGCAT+TGG | 0.551643 | 1.2:-2536556 | MS.gene27326:CDS |
TTAGTTACCTTGAGGAACTC+GGG | 0.553710 | 1.2:+2539684 | None:intergenic |
AAGATGATAGAGCTTCTTGG+AGG | 0.555446 | 1.2:-2525876 | MS.gene27326:CDS |
GGATACGATAAGCTTGGAGC+AGG | 0.558146 | 1.2:-2529562 | MS.gene27326:CDS |
TGATGGAAAAGGAGAAGATG+TGG | 0.559156 | 1.2:-2537227 | MS.gene27326:CDS |
TGTAGGCTGTCTAGTCATCA+GGG | 0.559420 | 1.2:+2523067 | None:intergenic |
TTGATTATAAAATATCCTCC+AGG | 0.560380 | 1.2:+2538098 | None:intergenic |
AAAATATCCTCCAGGATCGA+GGG | 0.561023 | 1.2:+2538106 | None:intergenic |
AAAATGACAAGAAAGGAATC+GGG | 0.561316 | 1.2:+2532190 | None:intergenic |
CCCTTGTCAGCAATGACAAG+AGG | 0.564644 | 1.2:+2531274 | None:intergenic |
GCAATGGGAAAGCAAGCTAT+GGG | 0.566668 | 1.2:-2530700 | MS.gene27326:CDS |
ATGCTTCCGATATTAACTTC+GGG | 0.569242 | 1.2:+2538295 | None:intergenic |
GTTGATATTGAATACACTCT+GGG | 0.569759 | 1.2:-2538508 | MS.gene27326:CDS |
GTTTACTTGGCTTCTGATGG+TGG | 0.571419 | 1.2:-2531310 | MS.gene27326:CDS |
AAGAAGTGGTCATGCTGACA+AGG | 0.575298 | 1.2:-2525802 | MS.gene27326:CDS |
TCATGTCACTACTGATGAAG+AGG | 0.576837 | 1.2:-2533477 | MS.gene27326:CDS |
TCAACTCACAGGATTATGTA+GGG | 0.577562 | 1.2:-2534993 | MS.gene27326:intron |
TGTCTATGTCAATGAAAAGC+AGG | 0.577589 | 1.2:-2531961 | MS.gene27326:intron |
ATCTGATTATGAATCCTCAT+GGG | 0.577851 | 1.2:-2528057 | MS.gene27326:CDS |
AGACACCACGGGAAATATGC+AGG | 0.578495 | 1.2:-2529254 | MS.gene27326:intron |
ATGACTAGACAGCCTACAGA+AGG | 0.581221 | 1.2:-2523062 | MS.gene27326:CDS |
TGTCCCTGTGATACTCCTGA+AGG | 0.585849 | 1.2:-2533539 | MS.gene27326:CDS |
TAAAATATCCTCCAGGATCG+AGG | 0.588272 | 1.2:+2538105 | None:intergenic |
AGTGAAACTCTCGTGAAACA+TGG | 0.588483 | 1.2:-2525691 | MS.gene27326:CDS |
CTACTGCAATGAGGAAGTTG+CGG | 0.588745 | 1.2:-2532013 | MS.gene27326:CDS |
AATTCTAAATAAGGATGCAA+TGG | 0.592120 | 1.2:-2535537 | MS.gene27326:CDS |
AAATTCTTACCCGTCACACT+CGG | 0.597536 | 1.2:-2528288 | MS.gene27326:CDS |
GCACAAGCCTGGAGTGACAC+AGG | 0.598152 | 1.2:-2533978 | MS.gene27326:intron |
TTGGAAAGGACTCTATCGAC+GGG | 0.599936 | 1.2:-2534028 | MS.gene27326:CDS |
ACTTATTCCCGAGTTCCTCA+AGG | 0.604668 | 1.2:-2539691 | MS.gene27326:intron |
ATTCAATAAATCTATAGAAG+GGG | 0.607329 | 1.2:-2528365 | MS.gene27326:CDS |
AAACCGTCAATAATGAAGGA+TGG | 0.607542 | 1.2:-2538827 | MS.gene27326:CDS |
AGATGATAGAGCTTCTTGGA+GGG | 0.609479 | 1.2:-2525875 | MS.gene27326:CDS |
AAAGTAAGCTGTCCATCCGT+CGG | 0.611428 | 1.2:+2529709 | None:intergenic |
CCTCTTGTCATTGCTGACAA+GGG | 0.611860 | 1.2:-2531274 | MS.gene27326:CDS |
CACAGGTCTGTGGAGCGTGT+GGG | 0.615516 | 1.2:-2520866 | MS.gene27326:intron |
TTTGGAAAGGACTCTATCGA+CGG | 0.617261 | 1.2:-2534029 | MS.gene27326:CDS |
CTACCAGAAATTAAAACACA+TGG | 0.617916 | 1.2:-2523409 | MS.gene27326:intron |
GAAGGGAAAGCTAGAAATGG+AGG | 0.618532 | 1.2:-2523044 | MS.gene27326:intron |
GGGAAAGCAGGGGTTTCATG+TGG | 0.619087 | 1.2:-2525855 | MS.gene27326:CDS |
TAAGGATGCAATGGATGACA+AGG | 0.622249 | 1.2:-2535528 | MS.gene27326:intron |
TGGCAAGCATAGGAGACCAC+AGG | 0.623814 | 1.2:-2532152 | MS.gene27326:intron |
AATAGAGCTGGAGACACCAC+GGG | 0.625729 | 1.2:-2529265 | MS.gene27326:CDS |
CTATCTTAGGAGTTTGTGCG+GGG | 0.625949 | 1.2:-2530894 | MS.gene27326:CDS |
TTGTCAACAGCAGAATTCAC+AGG | 0.626290 | 1.2:+2539720 | None:intergenic |
GTTCTATCATTGGCAAGCAT+AGG | 0.627156 | 1.2:-2532162 | MS.gene27326:CDS |
AACAAGTCATCTCTTGATCG+AGG | 0.627507 | 1.2:-2529475 | MS.gene27326:CDS |
CTCGATAAGATGCATGCTCG+TGG | 0.628312 | 1.2:-2523104 | MS.gene27326:CDS |
AAAGCAGATTTCTAACGTGA+AGG | 0.631729 | 1.2:-2520784 | MS.gene27326:CDS |
CCGTCACACTCGGAGGCCTG+AGG | 0.632543 | 1.2:-2528278 | MS.gene27326:intron |
GTTGGATAAGAAGCCGAACA+AGG | 0.632605 | 1.2:-2534780 | MS.gene27326:CDS |
TGTAATGAAAGCTATGGGGA+TGG | 0.636561 | 1.2:-2537060 | MS.gene27326:CDS |
TATAATCAAAGGGAACGAGA+AGG | 0.637087 | 1.2:-2538084 | MS.gene27326:intron |
TGTCACTACTGATGAAGAGG+AGG | 0.638150 | 1.2:-2533474 | MS.gene27326:CDS |
AACATACCAGGGAAATCAGG+GGG | 0.638830 | 1.2:+2533450 | None:intergenic |
GAAGCATGCCTATTATGTTG+CGG | 0.639708 | 1.2:-2538279 | MS.gene27326:CDS |
CTACAGTGGTTATGATATCG+AGG | 0.642806 | 1.2:-2529512 | MS.gene27326:CDS |
AAACATGGCTTCAGTTACAG+TGG | 0.645725 | 1.2:-2525676 | MS.gene27326:CDS |
ATAACCTAAGAAAAGAAACA+AGG | 0.646355 | 1.2:-2538477 | MS.gene27326:CDS |
TATCACCTGCATATTTCCCG+TGG | 0.648512 | 1.2:+2529249 | None:intergenic |
CCTACGTTCGATCAGATAGT+CGG | 0.651130 | 1.2:+2538774 | None:intergenic |
AACATGGCTTCAGTTACAGT+GGG | 0.651201 | 1.2:-2525675 | MS.gene27326:CDS |
ACTCCTGAAGGTGAAGATTG+CGG | 0.653104 | 1.2:-2533527 | MS.gene27326:CDS |
GGGGAATATAGCATATAACC+AGG | 0.656646 | 1.2:-2530680 | MS.gene27326:intron |
GTTGTCAGCAAAGGCCGTTG+AGG | 0.657654 | 1.2:+2529672 | None:intergenic |
GGCACCCATATATTTATCTG+AGG | 0.657889 | 1.2:-2539450 | MS.gene27326:intron |
TAACCTAAGAAAAGAAACAA+GGG | 0.661237 | 1.2:-2538476 | MS.gene27326:intron |
AAACATACCAGGGAAATCAG+GGG | 0.661598 | 1.2:+2533449 | None:intergenic |
AAATAGAGCTGGAGACACCA+CGG | 0.664071 | 1.2:-2529266 | MS.gene27326:CDS |
AAATATCCTCCAGGATCGAG+GGG | 0.671157 | 1.2:+2538107 | None:intergenic |
GTAGCTGTAATGAGCTACAG+TGG | 0.671807 | 1.2:-2529526 | MS.gene27326:CDS |
TTCTTACCCGTCACACTCGG+AGG | 0.674877 | 1.2:-2528285 | MS.gene27326:CDS |
TGACTAGACAGCCTACAGAA+GGG | 0.676482 | 1.2:-2523061 | MS.gene27326:CDS |
GAGAAGTCCAGGAAAGTAAG+CGG | 0.679479 | 1.2:-2533820 | MS.gene27326:CDS |
TATTACCTTGGAAACCCATG+AGG | 0.679988 | 1.2:+2528043 | None:intergenic |
GTAGCTCATTACAGCTACAG+TGG | 0.685449 | 1.2:+2529531 | None:intergenic |
ATAAATTCAGTAGCAGACAT+GGG | 0.686101 | 1.2:-2528150 | MS.gene27326:CDS |
TCACCTTCAGGAGTATCACA+GGG | 0.711107 | 1.2:+2533536 | None:intergenic |
ACATACCAGGGAAATCAGGG+GGG | 0.714434 | 1.2:+2533451 | None:intergenic |
TGAGTATCTTGATGTCAATG+AGG | 0.718554 | 1.2:-2531088 | MS.gene27326:CDS |
GCTTCTTGGAGGGAAAGCAG+GGG | 0.723235 | 1.2:-2525865 | MS.gene27326:CDS |
GAGTGTCCCCTCGATCCTGG+AGG | 0.724844 | 1.2:-2538113 | MS.gene27326:CDS |
CAATGGGAAAGCAAGCTATG+GGG | 0.735564 | 1.2:-2530699 | MS.gene27326:CDS |
GCTGCCATGTTAGAAAACCG+GGG | 0.755143 | 1.2:+2535985 | None:intergenic |
ATAAGTAGAAAACTGTAACG+AGG | 0.757109 | 1.2:+2536999 | None:intergenic |
TGGTTGTAATGAAAGCTATG+GGG | 0.784001 | 1.2:-2537064 | MS.gene27326:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 2520290 | 2539766 | 2520290 | ID=MS.gene27326 |
chr1.2 | mRNA | 2520290 | 2539766 | 2520290 | ID=MS.gene27326.t1;Parent=MS.gene27326 |
chr1.2 | exon | 2539692 | 2539766 | 2539692 | ID=MS.gene27326.t1.exon1;Parent=MS.gene27326.t1 |
chr1.2 | CDS | 2539692 | 2539766 | 2539692 | ID=cds.MS.gene27326.t1;Parent=MS.gene27326.t1 |
chr1.2 | exon | 2539451 | 2539572 | 2539451 | ID=MS.gene27326.t1.exon2;Parent=MS.gene27326.t1 |
chr1.2 | CDS | 2539451 | 2539572 | 2539451 | ID=cds.MS.gene27326.t1;Parent=MS.gene27326.t1 |
chr1.2 | exon | 2538779 | 2538871 | 2538779 | ID=MS.gene27326.t1.exon3;Parent=MS.gene27326.t1 |
chr1.2 | CDS | 2538779 | 2538871 | 2538779 | ID=cds.MS.gene27326.t1;Parent=MS.gene27326.t1 |
chr1.2 | exon | 2538477 | 2538549 | 2538477 | ID=MS.gene27326.t1.exon4;Parent=MS.gene27326.t1 |
chr1.2 | CDS | 2538477 | 2538549 | 2538477 | ID=cds.MS.gene27326.t1;Parent=MS.gene27326.t1 |
chr1.2 | exon | 2538227 | 2538317 | 2538227 | ID=MS.gene27326.t1.exon5;Parent=MS.gene27326.t1 |
chr1.2 | CDS | 2538227 | 2538317 | 2538227 | ID=cds.MS.gene27326.t1;Parent=MS.gene27326.t1 |
chr1.2 | exon | 2538085 | 2538137 | 2538085 | ID=MS.gene27326.t1.exon6;Parent=MS.gene27326.t1 |
chr1.2 | CDS | 2538085 | 2538137 | 2538085 | ID=cds.MS.gene27326.t1;Parent=MS.gene27326.t1 |
chr1.2 | exon | 2537667 | 2537731 | 2537667 | ID=MS.gene27326.t1.exon7;Parent=MS.gene27326.t1 |
chr1.2 | CDS | 2537667 | 2537731 | 2537667 | ID=cds.MS.gene27326.t1;Parent=MS.gene27326.t1 |
chr1.2 | exon | 2537200 | 2537305 | 2537200 | ID=MS.gene27326.t1.exon8;Parent=MS.gene27326.t1 |
chr1.2 | CDS | 2537200 | 2537305 | 2537200 | ID=cds.MS.gene27326.t1;Parent=MS.gene27326.t1 |
chr1.2 | exon | 2536986 | 2537096 | 2536986 | ID=MS.gene27326.t1.exon9;Parent=MS.gene27326.t1 |
chr1.2 | CDS | 2536986 | 2537096 | 2536986 | ID=cds.MS.gene27326.t1;Parent=MS.gene27326.t1 |
chr1.2 | exon | 2536539 | 2536598 | 2536539 | ID=MS.gene27326.t1.exon10;Parent=MS.gene27326.t1 |
chr1.2 | CDS | 2536539 | 2536598 | 2536539 | ID=cds.MS.gene27326.t1;Parent=MS.gene27326.t1 |
chr1.2 | exon | 2535978 | 2536016 | 2535978 | ID=MS.gene27326.t1.exon11;Parent=MS.gene27326.t1 |
chr1.2 | CDS | 2535978 | 2536016 | 2535978 | ID=cds.MS.gene27326.t1;Parent=MS.gene27326.t1 |
chr1.2 | exon | 2535794 | 2535844 | 2535794 | ID=MS.gene27326.t1.exon12;Parent=MS.gene27326.t1 |
chr1.2 | CDS | 2535794 | 2535844 | 2535794 | ID=cds.MS.gene27326.t1;Parent=MS.gene27326.t1 |
chr1.2 | exon | 2535529 | 2535627 | 2535529 | ID=MS.gene27326.t1.exon13;Parent=MS.gene27326.t1 |
chr1.2 | CDS | 2535529 | 2535627 | 2535529 | ID=cds.MS.gene27326.t1;Parent=MS.gene27326.t1 |
chr1.2 | exon | 2534945 | 2535004 | 2534945 | ID=MS.gene27326.t1.exon14;Parent=MS.gene27326.t1 |
chr1.2 | CDS | 2534945 | 2535004 | 2534945 | ID=cds.MS.gene27326.t1;Parent=MS.gene27326.t1 |
chr1.2 | exon | 2534760 | 2534852 | 2534760 | ID=MS.gene27326.t1.exon15;Parent=MS.gene27326.t1 |
chr1.2 | CDS | 2534760 | 2534852 | 2534760 | ID=cds.MS.gene27326.t1;Parent=MS.gene27326.t1 |
chr1.2 | exon | 2533979 | 2534089 | 2533979 | ID=MS.gene27326.t1.exon16;Parent=MS.gene27326.t1 |
chr1.2 | CDS | 2533979 | 2534089 | 2533979 | ID=cds.MS.gene27326.t1;Parent=MS.gene27326.t1 |
chr1.2 | exon | 2533795 | 2533905 | 2533795 | ID=MS.gene27326.t1.exon17;Parent=MS.gene27326.t1 |
chr1.2 | CDS | 2533795 | 2533905 | 2533795 | ID=cds.MS.gene27326.t1;Parent=MS.gene27326.t1 |
chr1.2 | exon | 2533457 | 2533573 | 2533457 | ID=MS.gene27326.t1.exon18;Parent=MS.gene27326.t1 |
chr1.2 | CDS | 2533457 | 2533573 | 2533457 | ID=cds.MS.gene27326.t1;Parent=MS.gene27326.t1 |
chr1.2 | exon | 2532153 | 2532269 | 2532153 | ID=MS.gene27326.t1.exon19;Parent=MS.gene27326.t1 |
chr1.2 | CDS | 2532153 | 2532269 | 2532153 | ID=cds.MS.gene27326.t1;Parent=MS.gene27326.t1 |
chr1.2 | exon | 2531962 | 2532042 | 2531962 | ID=MS.gene27326.t1.exon20;Parent=MS.gene27326.t1 |
chr1.2 | CDS | 2531962 | 2532042 | 2531962 | ID=cds.MS.gene27326.t1;Parent=MS.gene27326.t1 |
chr1.2 | exon | 2531234 | 2531338 | 2531234 | ID=MS.gene27326.t1.exon21;Parent=MS.gene27326.t1 |
chr1.2 | CDS | 2531234 | 2531338 | 2531234 | ID=cds.MS.gene27326.t1;Parent=MS.gene27326.t1 |
chr1.2 | exon | 2531074 | 2531154 | 2531074 | ID=MS.gene27326.t1.exon22;Parent=MS.gene27326.t1 |
chr1.2 | CDS | 2531074 | 2531154 | 2531074 | ID=cds.MS.gene27326.t1;Parent=MS.gene27326.t1 |
chr1.2 | exon | 2530846 | 2530977 | 2530846 | ID=MS.gene27326.t1.exon23;Parent=MS.gene27326.t1 |
chr1.2 | CDS | 2530846 | 2530977 | 2530846 | ID=cds.MS.gene27326.t1;Parent=MS.gene27326.t1 |
chr1.2 | exon | 2530681 | 2530725 | 2530681 | ID=MS.gene27326.t1.exon24;Parent=MS.gene27326.t1 |
chr1.2 | CDS | 2530681 | 2530725 | 2530681 | ID=cds.MS.gene27326.t1;Parent=MS.gene27326.t1 |
chr1.2 | exon | 2529656 | 2529733 | 2529656 | ID=MS.gene27326.t1.exon25;Parent=MS.gene27326.t1 |
chr1.2 | CDS | 2529656 | 2529733 | 2529656 | ID=cds.MS.gene27326.t1;Parent=MS.gene27326.t1 |
chr1.2 | exon | 2529448 | 2529587 | 2529448 | ID=MS.gene27326.t1.exon26;Parent=MS.gene27326.t1 |
chr1.2 | CDS | 2529448 | 2529587 | 2529448 | ID=cds.MS.gene27326.t1;Parent=MS.gene27326.t1 |
chr1.2 | exon | 2529255 | 2529345 | 2529255 | ID=MS.gene27326.t1.exon27;Parent=MS.gene27326.t1 |
chr1.2 | CDS | 2529255 | 2529345 | 2529255 | ID=cds.MS.gene27326.t1;Parent=MS.gene27326.t1 |
chr1.2 | exon | 2528493 | 2528614 | 2528493 | ID=MS.gene27326.t1.exon28;Parent=MS.gene27326.t1 |
chr1.2 | CDS | 2528493 | 2528614 | 2528493 | ID=cds.MS.gene27326.t1;Parent=MS.gene27326.t1 |
chr1.2 | exon | 2528279 | 2528411 | 2528279 | ID=MS.gene27326.t1.exon29;Parent=MS.gene27326.t1 |
chr1.2 | CDS | 2528279 | 2528411 | 2528279 | ID=cds.MS.gene27326.t1;Parent=MS.gene27326.t1 |
chr1.2 | exon | 2528049 | 2528179 | 2528049 | ID=MS.gene27326.t1.exon30;Parent=MS.gene27326.t1 |
chr1.2 | CDS | 2528049 | 2528179 | 2528049 | ID=cds.MS.gene27326.t1;Parent=MS.gene27326.t1 |
chr1.2 | exon | 2525789 | 2525914 | 2525789 | ID=MS.gene27326.t1.exon31;Parent=MS.gene27326.t1 |
chr1.2 | CDS | 2525789 | 2525914 | 2525789 | ID=cds.MS.gene27326.t1;Parent=MS.gene27326.t1 |
chr1.2 | exon | 2525656 | 2525711 | 2525656 | ID=MS.gene27326.t1.exon32;Parent=MS.gene27326.t1 |
chr1.2 | CDS | 2525656 | 2525711 | 2525656 | ID=cds.MS.gene27326.t1;Parent=MS.gene27326.t1 |
chr1.2 | exon | 2523410 | 2523480 | 2523410 | ID=MS.gene27326.t1.exon33;Parent=MS.gene27326.t1 |
chr1.2 | CDS | 2523410 | 2523480 | 2523410 | ID=cds.MS.gene27326.t1;Parent=MS.gene27326.t1 |
chr1.2 | exon | 2523045 | 2523129 | 2523045 | ID=MS.gene27326.t1.exon34;Parent=MS.gene27326.t1 |
chr1.2 | CDS | 2523045 | 2523129 | 2523045 | ID=cds.MS.gene27326.t1;Parent=MS.gene27326.t1 |
chr1.2 | exon | 2521831 | 2521934 | 2521831 | ID=MS.gene27326.t1.exon35;Parent=MS.gene27326.t1 |
chr1.2 | CDS | 2521831 | 2521934 | 2521831 | ID=cds.MS.gene27326.t1;Parent=MS.gene27326.t1 |
chr1.2 | exon | 2520755 | 2520883 | 2520755 | ID=MS.gene27326.t1.exon36;Parent=MS.gene27326.t1 |
chr1.2 | CDS | 2520755 | 2520883 | 2520755 | ID=cds.MS.gene27326.t1;Parent=MS.gene27326.t1 |
chr1.2 | exon | 2520290 | 2520292 | 2520290 | ID=MS.gene27326.t1.exon37;Parent=MS.gene27326.t1 |
chr1.2 | CDS | 2520290 | 2520292 | 2520290 | ID=cds.MS.gene27326.t1;Parent=MS.gene27326.t1 |
Gene Sequence |
Protein sequence |