Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050920.t1 | XP_003626240.2 | 97.2 | 319 | 9 | 0 | 1 | 319 | 1 | 319 | 4.50E-184 | 653.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050920.t1 | I6YGS0 | 38.4 | 320 | 177 | 8 | 7 | 316 | 7 | 316 | 1.1e-58 | 228.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050920.t1 | G7KXL9 | 97.2 | 319 | 9 | 0 | 1 | 319 | 1 | 319 | 3.2e-184 | 653.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050920 | MS.gene072512 | 0.860391 | 2.13E-63 | -1.69E-46 |
| MS.gene050920 | MS.gene23129 | 0.892515 | 1.48E-74 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene050920 | MS.gene035371 | PPI |
| MS.gene050920 | MS.gene071502 | PPI |
| MS.gene050920 | MS.gene071504 | PPI |
| MS.gene050920 | MS.gene066361 | PPI |
| MS.gene035367 | MS.gene050920 | PPI |
| MS.gene050920 | MS.gene071500 | PPI |
| MS.gene050920 | MS.gene041604 | PPI |
| MS.gene050920 | MS.gene77823 | PPI |
| MS.gene050920 | MS.gene025707 | PPI |
| MS.gene050920 | MS.gene22955 | PPI |
| MS.gene050920 | MS.gene035369 | PPI |
| MS.gene066360 | MS.gene050920 | PPI |
| MS.gene050920 | MS.gene76453 | PPI |
| MS.gene89620 | MS.gene050920 | PPI |
| MS.gene050920 | MS.gene035373 | PPI |
| MS.gene050920 | MS.gene07001 | PPI |
| MS.gene050920 | MS.gene012063 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050920.t1 | MTR_7g112960 | 97.179 | 319 | 9 | 0 | 1 | 319 | 1 | 319 | 0.0 | 650 |
| MS.gene050920.t1 | MTR_7g112963 | 88.088 | 319 | 38 | 0 | 1 | 319 | 1 | 319 | 0.0 | 595 |
| MS.gene050920.t1 | MTR_7g112970 | 88.088 | 319 | 35 | 1 | 1 | 319 | 1 | 316 | 0.0 | 586 |
| MS.gene050920.t1 | MTR_7g113020 | 78.683 | 319 | 68 | 0 | 1 | 319 | 1 | 319 | 0.0 | 536 |
| MS.gene050920.t1 | MTR_7g113050 | 78.193 | 321 | 66 | 2 | 1 | 319 | 1 | 319 | 0.0 | 528 |
| MS.gene050920.t1 | MTR_7g113030 | 77.116 | 319 | 73 | 0 | 1 | 319 | 1 | 319 | 0.0 | 526 |
| MS.gene050920.t1 | MTR_7g113010 | 86.833 | 281 | 37 | 0 | 1 | 281 | 1 | 281 | 0.0 | 525 |
| MS.gene050920.t1 | MTR_7g112620 | 75.549 | 319 | 78 | 0 | 1 | 319 | 1 | 319 | 0.0 | 519 |
| MS.gene050920.t1 | MTR_7g112615 | 76.176 | 319 | 76 | 0 | 1 | 319 | 1 | 319 | 0.0 | 519 |
| MS.gene050920.t1 | MTR_4g005160 | 68.421 | 323 | 97 | 3 | 1 | 319 | 1 | 322 | 1.82e-165 | 463 |
| MS.gene050920.t1 | MTR_4g120240 | 62.305 | 321 | 117 | 3 | 1 | 319 | 37 | 355 | 1.48e-147 | 419 |
| MS.gene050920.t1 | MTR_7g108825 | 61.801 | 322 | 115 | 3 | 1 | 319 | 1 | 317 | 7.94e-146 | 413 |
| MS.gene050920.t1 | MTR_7g113050 | 77.917 | 240 | 49 | 2 | 1 | 238 | 1 | 238 | 2.12e-139 | 394 |
| MS.gene050920.t1 | MTR_7g112615 | 75.630 | 238 | 58 | 0 | 1 | 238 | 1 | 238 | 5.63e-137 | 388 |
| MS.gene050920.t1 | MTR_8g076680 | 47.368 | 323 | 158 | 5 | 1 | 319 | 3 | 317 | 2.05e-108 | 318 |
| MS.gene050920.t1 | MTR_7g108825 | 60.996 | 241 | 86 | 3 | 1 | 238 | 1 | 236 | 3.88e-104 | 304 |
| MS.gene050920.t1 | MTR_7g112615 | 80.571 | 175 | 31 | 1 | 1 | 172 | 1 | 175 | 1.26e-102 | 298 |
| MS.gene050920.t1 | MTR_1g083480 | 76.730 | 159 | 33 | 2 | 1 | 156 | 1 | 158 | 4.36e-88 | 261 |
| MS.gene050920.t1 | MTR_8g076680 | 47.107 | 242 | 118 | 3 | 1 | 238 | 3 | 238 | 2.76e-83 | 251 |
| MS.gene050920.t1 | MTR_7g112910 | 49.801 | 251 | 67 | 7 | 72 | 319 | 1 | 195 | 1.54e-70 | 218 |
| MS.gene050920.t1 | MTR_2g090240 | 37.188 | 320 | 189 | 6 | 1 | 318 | 1 | 310 | 2.10e-67 | 213 |
| MS.gene050920.t1 | MTR_2g090245 | 36.562 | 320 | 191 | 7 | 1 | 318 | 1 | 310 | 5.89e-66 | 210 |
| MS.gene050920.t1 | MTR_4g089060 | 36.137 | 321 | 190 | 6 | 1 | 318 | 1 | 309 | 9.95e-66 | 209 |
| MS.gene050920.t1 | MTR_4g089040 | 36.250 | 320 | 191 | 6 | 1 | 318 | 1 | 309 | 8.24e-65 | 207 |
| MS.gene050920.t1 | MTR_4g089060 | 33.621 | 348 | 189 | 7 | 1 | 318 | 1 | 336 | 9.87e-61 | 197 |
| MS.gene050920.t1 | MTR_3g024250 | 79.245 | 106 | 22 | 0 | 47 | 152 | 2 | 107 | 2.74e-56 | 179 |
| MS.gene050920.t1 | MTR_4g089060 | 37.768 | 233 | 136 | 3 | 1 | 231 | 1 | 226 | 7.45e-55 | 179 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050920.t1 | AT3G05600 | 63.385 | 325 | 112 | 4 | 1 | 319 | 1 | 324 | 6.02e-158 | 444 |
| MS.gene050920.t1 | AT4G02340 | 59.317 | 322 | 122 | 3 | 1 | 319 | 1 | 316 | 6.80e-146 | 414 |
| MS.gene050920.t1 | AT4G15960 | 54.769 | 325 | 140 | 3 | 1 | 319 | 51 | 374 | 6.94e-131 | 377 |
| MS.gene050920.t1 | AT2G26740 | 58.075 | 322 | 128 | 4 | 4 | 319 | 1 | 321 | 7.37e-126 | 363 |
| MS.gene050920.t1 | AT2G26750 | 55.763 | 321 | 136 | 4 | 4 | 319 | 1 | 320 | 1.25e-120 | 350 |
| MS.gene050920.t1 | AT3G05600 | 65.164 | 244 | 78 | 4 | 1 | 238 | 1 | 243 | 4.87e-119 | 342 |
| MS.gene050920.t1 | AT4G15955 | 50.154 | 325 | 126 | 4 | 5 | 319 | 6 | 304 | 2.22e-111 | 325 |
| MS.gene050920.t1 | AT3G51000 | 49.371 | 318 | 156 | 5 | 4 | 319 | 5 | 319 | 9.57e-108 | 317 |
| MS.gene050920.t1 | AT4G15955 | 61.272 | 173 | 57 | 2 | 5 | 167 | 6 | 178 | 1.58e-74 | 227 |
| MS.gene050920.t1 | AT4G15955 | 60.606 | 165 | 55 | 2 | 5 | 159 | 6 | 170 | 1.84e-69 | 214 |
Find 83 sgRNAs with CRISPR-Local
Find 277 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATAAGCTTTGATTCTTTC+AGG | 0.126719 | 7.1:+3462644 | None:intergenic |
| ATAACAACTTCCTCCAAATT+TGG | 0.197478 | 7.1:+3458990 | None:intergenic |
| CCATCAACAGGTTTCACTTT+TGG | 0.201205 | 7.1:+3462590 | None:intergenic |
| TGATATCCTCAGCAGCTTCT+TGG | 0.242215 | 7.1:+3458940 | None:intergenic |
| TAAGAAAGATGTGCCAAATT+TGG | 0.247220 | 7.1:-3459003 | MS.gene050920:CDS |
| TCTTCCTCGTTGCTCATGAC+TGG | 0.287745 | 7.1:-3462703 | MS.gene050920:CDS |
| GTACTTGAAGCATGTGGATT+AGG | 0.317120 | 7.1:+3459778 | None:intergenic |
| ATGTTCTTGATCAGCAGTTC+TGG | 0.327516 | 7.1:+3459853 | None:intergenic |
| CACAGAACAGTGGAAGTAAA+TGG | 0.329659 | 7.1:-3462974 | MS.gene050920:CDS |
| TGAGATTTCTATAGTAGTTA+AGG | 0.334286 | 7.1:+3459674 | None:intergenic |
| GTACAAAGGCCCTCCCTTCT+TGG | 0.334892 | 7.1:-3459759 | MS.gene050920:CDS |
| TTCCTGAACTTTGGTACTCT+TGG | 0.363293 | 7.1:-3462889 | MS.gene050920:CDS |
| TTAGGTATCACGCCTTCTTT+TGG | 0.366228 | 7.1:+3459796 | None:intergenic |
| TTACTATATCTGCAGATTCC+AGG | 0.380361 | 7.1:-3462543 | MS.gene050920:intron |
| CGCCAAGAGTACCAAAGTTC+AGG | 0.381681 | 7.1:+3462887 | None:intergenic |
| GATGCAGTTTACACTTCATT+TGG | 0.385195 | 7.1:-3459056 | MS.gene050920:CDS |
| ATGCTTACAAGTAGGAATTC+TGG | 0.400743 | 7.1:-3459832 | MS.gene050920:CDS |
| CATGACTGGGGTGCCATGAT+TGG | 0.400934 | 7.1:-3462689 | MS.gene050920:CDS |
| CGCCACCAGATTGCGGCTCT+CGG | 0.403229 | 7.1:-3462866 | MS.gene050920:CDS |
| TTTGGAGGAAGTTGTTATAC+AGG | 0.404163 | 7.1:-3458985 | MS.gene050920:CDS |
| GAGATTTCTATAGTAGTTAA+GGG | 0.405115 | 7.1:+3459675 | None:intergenic |
| GATGGCATGCGAGCTTTGTT+TGG | 0.411295 | 7.1:-3462572 | MS.gene050920:CDS |
| TCACCGTATCCACGGAGATC+TGG | 0.416951 | 7.1:+3462818 | None:intergenic |
| TGCTTACAAGTAGGAATTCT+GGG | 0.417680 | 7.1:-3459831 | MS.gene050920:CDS |
| CATAAGCTTTGATTCTTTCA+GGG | 0.418162 | 7.1:+3462645 | None:intergenic |
| GCTTCTAAATTTGAAAAGAC+AGG | 0.421347 | 7.1:-3459709 | MS.gene050920:CDS |
| CCTGTTGTCCTGTTCCTTCA+CGG | 0.424309 | 7.1:-3462914 | MS.gene050920:CDS |
| GAGCTCACTGCAGCATGGAC+TGG | 0.424418 | 7.1:-3459122 | MS.gene050920:CDS |
| CCAAAAGTGAAACCTGTTGA+TGG | 0.426814 | 7.1:-3462590 | MS.gene050920:CDS |
| CTTCCTCGTTGCTCATGACT+GGG | 0.434456 | 7.1:-3462702 | MS.gene050920:CDS |
| TTTGGGTTTCTGGGTAAATA+CGG | 0.435366 | 7.1:+3462608 | None:intergenic |
| TAGCTACACAATCTTCCATT+TGG | 0.437058 | 7.1:-3462771 | MS.gene050920:CDS |
| TGTTCTTGATCAGCAGTTCT+GGG | 0.458674 | 7.1:+3459854 | None:intergenic |
| GGGAGCCGAGAGCCGCAATC+TGG | 0.460139 | 7.1:+3462861 | None:intergenic |
| CAGGAAAGCCGTGAAGGAAC+AGG | 0.460850 | 7.1:+3462906 | None:intergenic |
| AAAGCTCGCATGCCATCAAC+AGG | 0.462838 | 7.1:+3462578 | None:intergenic |
| TTCACGGCTTTCCTGAACTT+TGG | 0.464362 | 7.1:-3462898 | MS.gene050920:CDS |
| TTATCATATATACAGAAATT+GGG | 0.470961 | 7.1:-3459144 | MS.gene050920:intron |
| CCGTGAAGGAACAGGACAAC+AGG | 0.481846 | 7.1:+3462914 | None:intergenic |
| AAAATGCATATTGCTGAGAA+AGG | 0.485302 | 7.1:-3462947 | MS.gene050920:CDS |
| GCTCCAGATCTCCGTGGATA+CGG | 0.493914 | 7.1:-3462821 | MS.gene050920:CDS |
| CATGAGCAACGAGGAAGACT+TGG | 0.494085 | 7.1:+3462708 | None:intergenic |
| ATTGCGGCTCTCGGCTCCCT+CGG | 0.495545 | 7.1:-3462857 | MS.gene050920:CDS |
| GAAAGATGTGCCAAATTTGG+AGG | 0.498854 | 7.1:-3459000 | MS.gene050920:CDS |
| CAACGATATCACCTACCAAA+TGG | 0.500645 | 7.1:+3462756 | None:intergenic |
| CAATCCATGTGCCAGGAACC+AGG | 0.501841 | 7.1:-3459907 | MS.gene050920:intron |
| TCTTCTTGTGAGAGCCAAGA+AGG | 0.520505 | 7.1:+3459745 | None:intergenic |
| ACAAAGATACCAACCAATCA+TGG | 0.521014 | 7.1:+3462676 | None:intergenic |
| GCCTTTGTACTTGAAGCATG+TGG | 0.538003 | 7.1:+3459772 | None:intergenic |
| AGCCGAGAGCCGCAATCTGG+TGG | 0.547065 | 7.1:+3462864 | None:intergenic |
| ATTGCTGAGAAAGGAAAAGA+AGG | 0.548522 | 7.1:-3462938 | MS.gene050920:CDS |
| CCACCAATCCTACCAAAAGA+AGG | 0.551242 | 7.1:-3459808 | MS.gene050920:CDS |
| TCACCTGTGATGAACGTCAC+TGG | 0.555453 | 7.1:+3459083 | None:intergenic |
| GAGGAAGTTGTTATACAGGA+AGG | 0.556694 | 7.1:-3458981 | MS.gene050920:CDS |
| ATGGAAGCTGAATTTGCTAA+AGG | 0.559276 | 7.1:-3459880 | MS.gene050920:CDS |
| TTGTGAGAGCCAAGAAGGGA+GGG | 0.564283 | 7.1:+3459750 | None:intergenic |
| ACTGGGGTGCCATGATTGGT+TGG | 0.574896 | 7.1:-3462685 | MS.gene050920:CDS |
| GTGCCAGTGACGTTCATCAC+AGG | 0.577493 | 7.1:-3459086 | MS.gene050920:CDS |
| TCAAGAACATGCTTACAAGT+AGG | 0.581750 | 7.1:-3459840 | MS.gene050920:CDS |
| CTCTTGGCGCCACCAGATTG+CGG | 0.594106 | 7.1:-3462873 | MS.gene050920:CDS |
| ATTGGGAGCTCACTGCAGCA+TGG | 0.599865 | 7.1:-3459127 | MS.gene050920:CDS |
| ACTAACTGAAGTCGGAGCAT+CGG | 0.602755 | 7.1:+3462793 | None:intergenic |
| CAACAACCAAGAAGCTGCTG+AGG | 0.614308 | 7.1:-3458946 | MS.gene050920:CDS |
| CATCGGTGTCACCGTATCCA+CGG | 0.616606 | 7.1:+3462810 | None:intergenic |
| ACAAAGCAATACATCGAGAG+TGG | 0.620658 | 7.1:-3459032 | MS.gene050920:CDS |
| AAAGTTCAGGAAAGCCGTGA+AGG | 0.621297 | 7.1:+3462900 | None:intergenic |
| TTTGAAAAGACAGGATTCAG+TGG | 0.621795 | 7.1:-3459700 | MS.gene050920:CDS |
| CTTGTGAGAGCCAAGAAGGG+AGG | 0.625664 | 7.1:+3459749 | None:intergenic |
| AGCAACAGCACGGTAACCGA+GGG | 0.627749 | 7.1:+3462841 | None:intergenic |
| AGGAGTAGAGCACAGAACAG+TGG | 0.630212 | 7.1:-3462984 | MS.gene050920:CDS |
| GAGCAACAGCACGGTAACCG+AGG | 0.630872 | 7.1:+3462840 | None:intergenic |
| CTTCTTGTGAGAGCCAAGAA+GGG | 0.631265 | 7.1:+3459746 | None:intergenic |
| TCCACATGCTTCAAGTACAA+AGG | 0.634635 | 7.1:-3459773 | MS.gene050920:CDS |
| GTGTAGCTACTAACTGAAGT+CGG | 0.636114 | 7.1:+3462785 | None:intergenic |
| AGTTGTTATACAGGAAGGTG+TGG | 0.637871 | 7.1:-3458976 | MS.gene050920:CDS |
| TACACAATCTTCCATTTGGT+AGG | 0.644672 | 7.1:-3462767 | MS.gene050920:CDS |
| TTCCTCGTTGCTCATGACTG+GGG | 0.644782 | 7.1:-3462701 | MS.gene050920:CDS |
| GAAGCTGAATTTGCTAAAGG+TGG | 0.645560 | 7.1:-3459877 | MS.gene050920:CDS |
| GTTGCTCTCATCGACTCACT+CGG | 0.658224 | 7.1:-3462737 | MS.gene050920:CDS |
| AAGCAATACATCGAGAGTGG+AGG | 0.668681 | 7.1:-3459029 | MS.gene050920:CDS |
| GGAGATCTGGAGCAACAGCA+CGG | 0.677123 | 7.1:+3462831 | None:intergenic |
| GCTGTTGCTCCAGATCTCCG+TGG | 0.694215 | 7.1:-3462827 | MS.gene050920:CDS |
| CACCCCAGTCATGAGCAACG+AGG | 0.746246 | 7.1:+3462699 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATTATTAATAAAAAGAAAT+TGG | - | chr7.1:3461720-3461739 | MS.gene050920:intron | 10.0% |
| !! | AAAAAAAAAAAACCAAAAAG+AGG | + | chr7.1:3459590-3459609 | None:intergenic | 15.0% |
| !! | AACAATATAATGGTTATAAT+TGG | - | chr7.1:3459697-3459716 | MS.gene050920:CDS | 15.0% |
| !! | ATCATCTATTTCAAATAAAT+GGG | + | chr7.1:3461404-3461423 | None:intergenic | 15.0% |
| !! | TATCATCTATTTCAAATAAA+TGG | + | chr7.1:3461405-3461424 | None:intergenic | 15.0% |
| !! | TTATCATATATACAGAAATT+GGG | - | chr7.1:3462750-3462769 | MS.gene050920:CDS | 15.0% |
| !! | TTGAAGTTTATATAATTGTT+GGG | + | chr7.1:3460625-3460644 | None:intergenic | 15.0% |
| !! | TTTATCATATATACAGAAAT+TGG | - | chr7.1:3462749-3462768 | MS.gene050920:CDS | 15.0% |
| !!! | AAAATGTTAGATTTTTAACT+TGG | - | chr7.1:3461477-3461496 | MS.gene050920:intron | 15.0% |
| !!! | AAATTCCACAAATTTTTTAA+AGG | + | chr7.1:3461699-3461718 | None:intergenic | 15.0% |
| !!! | AGATAGATCAAAAATTTTAA+TGG | + | chr7.1:3461080-3461099 | None:intergenic | 15.0% |
| !!! | AGTATATTGTTTGATTTTAA+TGG | - | chr7.1:3459739-3459758 | MS.gene050920:CDS | 15.0% |
| !!! | ATTTATTTGAAATAGATGAT+AGG | - | chr7.1:3461404-3461423 | MS.gene050920:intron | 15.0% |
| !!! | GTATATTGTTTGATTTTAAT+GGG | - | chr7.1:3459740-3459759 | MS.gene050920:CDS | 15.0% |
| !!! | TATATTGTTTGATTTTAATG+GGG | - | chr7.1:3459741-3459760 | MS.gene050920:CDS | 15.0% |
| !! | AAATGTGATATCAAAATTCA+AGG | + | chr7.1:3462588-3462607 | None:intergenic | 20.0% |
| !! | AGTAGTACAAAAATGAATTT+AGG | - | chr7.1:3460075-3460094 | MS.gene050920:intron | 20.0% |
| !! | CAACAATTATATAAACTTCA+AGG | - | chr7.1:3460624-3460643 | MS.gene050920:intron | 20.0% |
| !! | CAATAAAAGAAATTCAAAAG+AGG | + | chr7.1:3460156-3460175 | None:intergenic | 20.0% |
| !! | CATTCAATCAAACAATATAA+TGG | - | chr7.1:3459687-3459706 | MS.gene050920:CDS | 20.0% |
| !! | CTTGAAGTTTATATAATTGT+TGG | + | chr7.1:3460626-3460645 | None:intergenic | 20.0% |
| !! | TCATCTATTTCAAATAAATG+GGG | + | chr7.1:3461403-3461422 | None:intergenic | 20.0% |
| !! | TCTATTAACAAATACACATT+GGG | + | chr7.1:3462714-3462733 | None:intergenic | 20.0% |
| !! | TTCTATTAACAAATACACAT+TGG | + | chr7.1:3462715-3462734 | None:intergenic | 20.0% |
| !!! | ATTTCAAATGTTTTTTTGAG+TGG | + | chr7.1:3460986-3461005 | None:intergenic | 20.0% |
| ! | AAATGGTTCAATTGGTTAAA+AGG | + | chr7.1:3461106-3461125 | None:intergenic | 25.0% |
| ! | AAGCAATAATTACAAGTAGT+TGG | + | chr7.1:3461209-3461228 | None:intergenic | 25.0% |
| ! | AATTTAGTTAGTCAAGAAGA+GGG | + | chr7.1:3462360-3462379 | None:intergenic | 25.0% |
| ! | AGAACAAAAAATGGTTCAAT+TGG | + | chr7.1:3461114-3461133 | None:intergenic | 25.0% |
| ! | AGCAATAATTACAAGTAGTT+GGG | + | chr7.1:3461208-3461227 | None:intergenic | 25.0% |
| ! | AGTACAAAAATGAATTTAGG+TGG | - | chr7.1:3460078-3460097 | MS.gene050920:intron | 25.0% |
| ! | ATCAGTGTTACATTTAATTC+AGG | - | chr7.1:3460854-3460873 | MS.gene050920:intron | 25.0% |
| ! | ATTAGGATTTACTAGGAATT+AGG | - | chr7.1:3461146-3461165 | MS.gene050920:intron | 25.0% |
| ! | CATTAAAAAAAACTTCACCA+AGG | - | chr7.1:3460337-3460356 | MS.gene050920:intron | 25.0% |
| ! | GAGATTTCTATAGTAGTTAA+GGG | + | chr7.1:3462222-3462241 | None:intergenic | 25.0% |
| ! | GTGATAGAAATACCAATATT+AGG | - | chr7.1:3460517-3460536 | MS.gene050920:intron | 25.0% |
| ! | TACAGTTTAGACACTAATTA+GGG | - | chr7.1:3459618-3459637 | MS.gene050920:intron | 25.0% |
| ! | TATCATGTCAGATTCTATTA+AGG | + | chr7.1:3460479-3460498 | None:intergenic | 25.0% |
| ! | TCAGTGTTACATTTAATTCA+GGG | - | chr7.1:3460855-3460874 | MS.gene050920:intron | 25.0% |
| ! | TGAGATTTCTATAGTAGTTA+AGG | + | chr7.1:3462223-3462242 | None:intergenic | 25.0% |
| ! | TGTTGAAATGGAGATAAAAT+TGG | - | chr7.1:3460121-3460140 | MS.gene050920:intron | 25.0% |
| ! | TTACAGTTTAGACACTAATT+AGG | - | chr7.1:3459617-3459636 | MS.gene050920:intron | 25.0% |
| ! | TTATGACATCTCAATTAGAT+TGG | - | chr7.1:3460194-3460213 | MS.gene050920:intron | 25.0% |
| !! | AAACTAGAGAAATAGGATTT+TGG | + | chr7.1:3461235-3461254 | None:intergenic | 25.0% |
| !! | AAGCATTTGCAAATTTTACA+AGG | + | chr7.1:3461529-3461548 | None:intergenic | 25.0% |
| !! | AATTTTATCTCCATTTCAAC+AGG | + | chr7.1:3460122-3460141 | None:intergenic | 25.0% |
| !! | ATTTTATCTCCATTTCAACA+GGG | + | chr7.1:3460121-3460140 | None:intergenic | 25.0% |
| !! | GATTACGAAACTAATTTTCT+TGG | + | chr7.1:3460783-3460802 | None:intergenic | 25.0% |
| !! | GTTTTTCATCGTAATAGATT+AGG | + | chr7.1:3460454-3460473 | None:intergenic | 25.0% |
| !! | TGTGTCCTTTAAAAAATTTG+TGG | - | chr7.1:3461691-3461710 | MS.gene050920:intron | 25.0% |
| !! | TTTTAACAGTGAAAACGTTA+GGG | - | chr7.1:3460933-3460952 | MS.gene050920:intron | 25.0% |
| !!! | ACAATTTAAGTTAGGGTTTT+AGG | + | chr7.1:3462470-3462489 | None:intergenic | 25.0% |
| !!! | ATTTTAACAGTGAAAACGTT+AGG | - | chr7.1:3460932-3460951 | MS.gene050920:intron | 25.0% |
| !!! | GGTTGTTTTGCTTATAATAT+TGG | + | chr7.1:3460762-3460781 | None:intergenic | 25.0% |
| !!! | GTCATTTTTCCAAATTAACT+AGG | - | chr7.1:3462256-3462275 | MS.gene050920:intron | 25.0% |
| !!! | TACACTTTTTTTTCCCATAT+GGG | + | chr7.1:3460381-3460400 | None:intergenic | 25.0% |
| !!! | TGGTGAAGTTTTTTTTAATG+AGG | + | chr7.1:3460337-3460356 | None:intergenic | 25.0% |
| !!! | TTACACTTTTTTTTCCCATA+TGG | + | chr7.1:3460382-3460401 | None:intergenic | 25.0% |
| !!! | TTGTGTTTGTTTTCCAAAAA+TGG | - | chr7.1:3461266-3461285 | MS.gene050920:intron | 25.0% |
| AAAAAACCAAAAAGAGGAAG+AGG | + | chr7.1:3459584-3459603 | None:intergenic | 30.0% | |
| AAAAACCAAAAAGAGGAAGA+GGG | + | chr7.1:3459583-3459602 | None:intergenic | 30.0% | |
| AAAATGCATATTGCTGAGAA+AGG | - | chr7.1:3458947-3458966 | MS.gene050920:CDS | 30.0% | |
| AAGTCAAAAGAGCAGTTAAA+AGG | + | chr7.1:3459557-3459576 | None:intergenic | 30.0% | |
| AATAATGCAAGCAGAAATAG+TGG | + | chr7.1:3459434-3459453 | None:intergenic | 30.0% | |
| AGAATATAAGAAAACGAACC+TGG | + | chr7.1:3459372-3459391 | None:intergenic | 30.0% | |
| AGAGAATATCCAATTTGGTA+TGG | - | chr7.1:3461446-3461465 | MS.gene050920:intron | 30.0% | |
| AGTAACTTAGACAGATTCAA+AGG | + | chr7.1:3459462-3459481 | None:intergenic | 30.0% | |
| ATAATGCAAGCAGAAATAGT+GGG | + | chr7.1:3459433-3459452 | None:intergenic | 30.0% | |
| ATGCTTATGAATAATCACGA+TGG | - | chr7.1:3461543-3461562 | MS.gene050920:intron | 30.0% | |
| CAAATAGAAATACAAGTGCA+GGG | + | chr7.1:3462509-3462528 | None:intergenic | 30.0% | |
| CAATTTAGTTAGTCAAGAAG+AGG | + | chr7.1:3462361-3462380 | None:intergenic | 30.0% | |
| CATTTAATTCAGGGATAAGT+CGG | - | chr7.1:3460864-3460883 | MS.gene050920:intron | 30.0% | |
| CGTCTTAATCTCTTTACTTT+GGG | - | chr7.1:3459924-3459943 | MS.gene050920:intron | 30.0% | |
| CTCTTCTTGACTAACTAAAT+TGG | - | chr7.1:3462359-3462378 | MS.gene050920:intron | 30.0% | |
| CTTAGGAATTAGGATTTACT+AGG | - | chr7.1:3461139-3461158 | MS.gene050920:intron | 30.0% | |
| GAAATACCAATATTAGGAGT+AGG | - | chr7.1:3460523-3460542 | MS.gene050920:intron | 30.0% | |
| GAGAATATCCAATTTGGTAT+GGG | - | chr7.1:3461447-3461466 | MS.gene050920:intron | 30.0% | |
| GATTCAGAGAATATCCAATT+TGG | - | chr7.1:3461441-3461460 | MS.gene050920:intron | 30.0% | |
| GCTTCTAAATTTGAAAAGAC+AGG | - | chr7.1:3462185-3462204 | MS.gene050920:intron | 30.0% | |
| GTAACTTAGACAGATTCAAA+GGG | + | chr7.1:3459461-3459480 | None:intergenic | 30.0% | |
| TAACTTAGACAGATTCAAAG+GGG | + | chr7.1:3459460-3459479 | None:intergenic | 30.0% | |
| TAAGTGTGCAGAACAAAAAA+TGG | + | chr7.1:3461123-3461142 | None:intergenic | 30.0% | |
| TAATTGTTGGGAAAACTGTT+TGG | + | chr7.1:3460613-3460632 | None:intergenic | 30.0% | |
| TACACATAAGGAAATTGTTG+TGG | + | chr7.1:3460553-3460572 | None:intergenic | 30.0% | |
| TCGTCTTAATCTCTTTACTT+TGG | - | chr7.1:3459923-3459942 | MS.gene050920:intron | 30.0% | |
| TCTCTTATGCATACAAACAA+CGG | - | chr7.1:3459959-3459978 | MS.gene050920:intron | 30.0% | |
| TGATTAAACCCATACCAAAT+TGG | + | chr7.1:3461458-3461477 | None:intergenic | 30.0% | |
| TGCTTAGAAATATGACTTCA+AGG | + | chr7.1:3460587-3460606 | None:intergenic | 30.0% | |
| TTTAGACACTAATTAGGGAA+CGG | - | chr7.1:3459623-3459642 | MS.gene050920:intron | 30.0% | |
| ! | AAAAAGTACAACTTGAGATC+AGG | - | chr7.1:3460278-3460297 | MS.gene050920:intron | 30.0% |
| ! | ACATAAGCTTTGATTCTTTC+AGG | + | chr7.1:3459253-3459272 | None:intergenic | 30.0% |
| ! | ACTTTGAGAAAGTTGTTGAT+TGG | - | chr7.1:3461647-3461666 | MS.gene050920:intron | 30.0% |
| ! | AGGGCAAAACAATTTAAGTT+AGG | + | chr7.1:3462478-3462497 | None:intergenic | 30.0% |
| ! | AGTATATCTCGTTTTCCTTA+CGG | - | chr7.1:3461371-3461390 | MS.gene050920:intron | 30.0% |
| ! | ATTTCTCTAGTTTCAAAACG+TGG | - | chr7.1:3461242-3461261 | MS.gene050920:intron | 30.0% |
| ! | ATTTGAAATAGATGATAGGC+CGG | - | chr7.1:3461408-3461427 | MS.gene050920:intron | 30.0% |
| ! | CATAAGCTTTGATTCTTTCA+GGG | + | chr7.1:3459252-3459271 | None:intergenic | 30.0% |
| ! | CTCTGAATCAAGTTTTTATC+CGG | + | chr7.1:3461430-3461449 | None:intergenic | 30.0% |
| ! | GGGCAAAACAATTTAAGTTA+GGG | + | chr7.1:3462477-3462496 | None:intergenic | 30.0% |
| !! | AACTTAAATTGTTTTGCCCT+TGG | - | chr7.1:3462478-3462497 | MS.gene050920:intron | 30.0% |
| !! | ACTTAAATTGTTTTGCCCTT+GGG | - | chr7.1:3462479-3462498 | MS.gene050920:intron | 30.0% |
| !! | GTGTTTTTAACACTTGTCTT+AGG | + | chr7.1:3460310-3460329 | None:intergenic | 30.0% |
| !!! | ACATGATTTTGATTTGTACG+TGG | - | chr7.1:3459490-3459509 | MS.gene050920:intron | 30.0% |
| !!! | ATTTTTTGTTCTGCACACTT+AGG | - | chr7.1:3461122-3461141 | MS.gene050920:intron | 30.0% |
| !!! | CGTTTTGAAACTAGAGAAAT+AGG | + | chr7.1:3461242-3461261 | None:intergenic | 30.0% |
| ACAAAAAAGCCCTGTTGAAA+TGG | - | chr7.1:3460109-3460128 | MS.gene050920:intron | 35.0% | |
| ACAAAGATACCAACCAATCA+TGG | + | chr7.1:3459221-3459240 | None:intergenic | 35.0% | |
| AGAAAGGTTGGAGTTATCTT+TGG | + | chr7.1:3460677-3460696 | None:intergenic | 35.0% | |
| AGTCTTAGTAATCCAGAGTT+CGG | - | chr7.1:3461772-3461791 | MS.gene050920:intron | 35.0% | |
| ATCTAAGTGATTGAGCTCAA+TGG | + | chr7.1:3461891-3461910 | None:intergenic | 35.0% | |
| ATGCTTACAAGTAGGAATTC+TGG | - | chr7.1:3462062-3462081 | MS.gene050920:intron | 35.0% | |
| ATTGCTGAGAAAGGAAAAGA+AGG | - | chr7.1:3458956-3458975 | MS.gene050920:CDS | 35.0% | |
| CAACGTGTAACTGAAGAAAA+TGG | - | chr7.1:3461592-3461611 | MS.gene050920:intron | 35.0% | |
| CCAAATAGAAATACAAGTGC+AGG | + | chr7.1:3462510-3462529 | None:intergenic | 35.0% | |
| CTCTTATGCATACAAACAAC+GGG | - | chr7.1:3459960-3459979 | MS.gene050920:intron | 35.0% | |
| CTTAATCTCTTTACTTTGGG+AGG | - | chr7.1:3459927-3459946 | MS.gene050920:intron | 35.0% | |
| GATGCAGTTTACACTTCATT+TGG | - | chr7.1:3462838-3462857 | MS.gene050920:CDS | 35.0% | |
| GTCACTCACATTTACACATA+AGG | + | chr7.1:3460565-3460584 | None:intergenic | 35.0% | |
| TAATGCTCCTAAGATCAAAG+AGG | + | chr7.1:3460904-3460923 | None:intergenic | 35.0% | |
| TACACAATCTTCCATTTGGT+AGG | - | chr7.1:3459127-3459146 | MS.gene050920:CDS | 35.0% | |
| TAGCTACACAATCTTCCATT+TGG | - | chr7.1:3459123-3459142 | MS.gene050920:CDS | 35.0% | |
| TCAAGAACATGCTTACAAGT+AGG | - | chr7.1:3462054-3462073 | MS.gene050920:intron | 35.0% | |
| TCAAGGATTGTAACATCTGA+AGG | + | chr7.1:3462571-3462590 | None:intergenic | 35.0% | |
| TCTTATGCATACAAACAACG+GGG | - | chr7.1:3459961-3459980 | MS.gene050920:intron | 35.0% | |
| TGCTTACAAGTAGGAATTCT+GGG | - | chr7.1:3462063-3462082 | MS.gene050920:intron | 35.0% | |
| TGGTTCAATTGGTTAAAAGG+AGG | + | chr7.1:3461103-3461122 | None:intergenic | 35.0% | |
| TTACTATATCTGCAGATTCC+AGG | - | chr7.1:3459351-3459370 | MS.gene050920:intron | 35.0% | |
| TTTGAAAAGACAGGATTCAG+TGG | - | chr7.1:3462194-3462213 | MS.gene050920:intron | 35.0% | |
| TTTGGAGGAAGTTGTTATAC+AGG | - | chr7.1:3462909-3462928 | MS.gene050920:CDS | 35.0% | |
| ! | CCTGCACTTGTATTTCTATT+TGG | - | chr7.1:3462507-3462526 | MS.gene050920:intron | 35.0% |
| ! | TAATGGTTTGAAACATGTGC+AGG | + | chr7.1:3461063-3461082 | None:intergenic | 35.0% |
| ! | TGTATAGATTGTGCTGATGT+TGG | + | chr7.1:3460423-3460442 | None:intergenic | 35.0% |
| ! | TTTAACCCTCTTCCTCTTTT+TGG | - | chr7.1:3459575-3459594 | MS.gene050920:intron | 35.0% |
| ! | TTTGGGTTTCTGGGTAAATA+CGG | + | chr7.1:3459289-3459308 | None:intergenic | 35.0% |
| ! | TTTTAACCCTCAGGTTTGTA+GGG | - | chr7.1:3461743-3461762 | MS.gene050920:intron | 35.0% |
| !! | AATTCAGCTTCCATTTTTCC+TGG | + | chr7.1:3462008-3462027 | None:intergenic | 35.0% |
| !! | ATGGAAGCTGAATTTGCTAA+AGG | - | chr7.1:3462014-3462033 | MS.gene050920:intron | 35.0% |
| !! | ATGGACTGGAGCAAAAATTA+AGG | - | chr7.1:3462786-3462805 | MS.gene050920:CDS | 35.0% |
| !! | CATCAACAGGTTTCACTTTT+GGG | + | chr7.1:3459306-3459325 | None:intergenic | 35.0% |
| !! | TTTGATCTTAGGAGCATTAG+AGG | - | chr7.1:3460905-3460924 | MS.gene050920:intron | 35.0% |
| !!! | AGAAATTGGTTTTAACCCTC+AGG | - | chr7.1:3461734-3461753 | MS.gene050920:intron | 35.0% |
| !!! | TGCGTGGGATTTTGATTTTT+GGG | - | chr7.1:3461321-3461340 | MS.gene050920:intron | 35.0% |
| !!! | TTGCGTGGGATTTTGATTTT+TGG | - | chr7.1:3461320-3461339 | MS.gene050920:intron | 35.0% |
| AAATCAAAATCCCACGCAAC+AGG | + | chr7.1:3461319-3461338 | None:intergenic | 40.0% | |
| AACATTCCATCACAAGAAGC+TGG | - | chr7.1:3460807-3460826 | MS.gene050920:intron | 40.0% | |
| AATGGTTAATGAGCTCCTCT+AGG | + | chr7.1:3461873-3461892 | None:intergenic | 40.0% | |
| ACAAAGCAATACATCGAGAG+TGG | - | chr7.1:3462862-3462881 | MS.gene050920:CDS | 40.0% | |
| AGTTGTTATACAGGAAGGTG+TGG | - | chr7.1:3462918-3462937 | MS.gene050920:CDS | 40.0% | |
| ATGTTCTTGATCAGCAGTTC+TGG | + | chr7.1:3462044-3462063 | None:intergenic | 40.0% | |
| ATTGAGCTAGCTCATGAGAA+AGG | + | chr7.1:3460693-3460712 | None:intergenic | 40.0% | |
| CAAATATCAATCCATGTGCC+AGG | - | chr7.1:3461980-3461999 | MS.gene050920:intron | 40.0% | |
| CAACGATATCACCTACCAAA+TGG | + | chr7.1:3459141-3459160 | None:intergenic | 40.0% | |
| CACAGAACAGTGGAAGTAAA+TGG | - | chr7.1:3458920-3458939 | MS.gene050920:CDS | 40.0% | |
| CATTCACGTACCACTTATAC+AGG | - | chr7.1:3462293-3462312 | MS.gene050920:intron | 40.0% | |
| CCAAAAGTGAAACCTGTTGA+TGG | - | chr7.1:3459304-3459323 | MS.gene050920:intron | 40.0% | |
| CCTGTGGATAAAACCCATAT+GGG | - | chr7.1:3460365-3460384 | MS.gene050920:intron | 40.0% | |
| CTAAGATCAAAGAGGTGATG+CGG | + | chr7.1:3460896-3460915 | None:intergenic | 40.0% | |
| CTATCACTAGTCACACTTGA+CGG | + | chr7.1:3460504-3460523 | None:intergenic | 40.0% | |
| CTTATGCATACAAACAACGG+GGG | - | chr7.1:3459962-3459981 | MS.gene050920:intron | 40.0% | |
| GAGGAAGTTGTTATACAGGA+AGG | - | chr7.1:3462913-3462932 | MS.gene050920:CDS | 40.0% | |
| GGTGAGACAAGAGATATGAT+GGG | - | chr7.1:3459983-3460002 | MS.gene050920:intron | 40.0% | |
| GGTGATCCTACTCCTAATAT+TGG | + | chr7.1:3460532-3460551 | None:intergenic | 40.0% | |
| GTACTTGAAGCATGTGGATT+AGG | + | chr7.1:3462119-3462138 | None:intergenic | 40.0% | |
| GTGTAGCTACTAACTGAAGT+CGG | + | chr7.1:3459112-3459131 | None:intergenic | 40.0% | |
| GTTCTGCACACTTAGGAATT+AGG | - | chr7.1:3461129-3461148 | MS.gene050920:intron | 40.0% | |
| TAATTCAGGGATAAGTCGGA+GGG | - | chr7.1:3460868-3460887 | MS.gene050920:intron | 40.0% | |
| TATCACTAGTCACACTTGAC+GGG | + | chr7.1:3460503-3460522 | None:intergenic | 40.0% | |
| TATTTCCCCTACAAACCTGA+GGG | + | chr7.1:3461752-3461771 | None:intergenic | 40.0% | |
| TCCACATGCTTCAAGTACAA+AGG | - | chr7.1:3462121-3462140 | MS.gene050920:intron | 40.0% | |
| TGTTCTTGATCAGCAGTTCT+GGG | + | chr7.1:3462043-3462062 | None:intergenic | 40.0% | |
| TTAATTCAGGGATAAGTCGG+AGG | - | chr7.1:3460867-3460886 | MS.gene050920:intron | 40.0% | |
| TTATTTCCCCTACAAACCTG+AGG | + | chr7.1:3461753-3461772 | None:intergenic | 40.0% | |
| TTCCTGAACTTTGGTACTCT+TGG | - | chr7.1:3459005-3459024 | MS.gene050920:CDS | 40.0% | |
| TTGAAACATGTGCAGGTTCT+AGG | + | chr7.1:3461056-3461075 | None:intergenic | 40.0% | |
| TTTAACCCTCAGGTTTGTAG+GGG | - | chr7.1:3461744-3461763 | MS.gene050920:intron | 40.0% | |
| TTTCTGCCAGAAATCGAACT+CGG | - | chr7.1:3461828-3461847 | MS.gene050920:intron | 40.0% | |
| ! | AACACTGATGATGCTGCTTA+TGG | + | chr7.1:3460843-3460862 | None:intergenic | 40.0% |
| ! | CCATCAACAGGTTTCACTTT+TGG | + | chr7.1:3459307-3459326 | None:intergenic | 40.0% |
| ! | TGATTTGTACGTGGTAGACT+TGG | - | chr7.1:3459499-3459518 | MS.gene050920:intron | 40.0% |
| ! | TTAGGTATCACGCCTTCTTT+TGG | + | chr7.1:3462101-3462120 | None:intergenic | 40.0% |
| ! | TTTATCCACAGGGTTTTCCT+TGG | + | chr7.1:3460357-3460376 | None:intergenic | 40.0% |
| !! | CCATATGGGTTTTATCCACA+GGG | + | chr7.1:3460367-3460386 | None:intergenic | 40.0% |
| !! | GAAGCTGAATTTGCTAAAGG+TGG | - | chr7.1:3462017-3462036 | MS.gene050920:intron | 40.0% |
| !! | GTTTTAACCCTCAGGTTTGT+AGG | - | chr7.1:3461742-3461761 | MS.gene050920:intron | 40.0% |
| !! | TATTGTCGCAACGCCATTTT+TGG | + | chr7.1:3461282-3461301 | None:intergenic | 40.0% |
| !! | TCCTCTAGGACAAATCGTTT+GGG | + | chr7.1:3461859-3461878 | None:intergenic | 40.0% |
| !! | TCTTAATTTGCCTGTTGCGT+GGG | - | chr7.1:3461306-3461325 | MS.gene050920:intron | 40.0% |
| !!! | AGGTTTCACTTTTGGGTTTC+TGG | + | chr7.1:3459299-3459318 | None:intergenic | 40.0% |
| !!! | GGGATTTTGATTTTTGGGTG+TGG | - | chr7.1:3461326-3461345 | MS.gene050920:intron | 40.0% |
| !!! | GGTTTCACTTTTGGGTTTCT+GGG | + | chr7.1:3459298-3459317 | None:intergenic | 40.0% |
| AAAGTTCAGGAAAGCCGTGA+AGG | + | chr7.1:3458997-3459016 | None:intergenic | 45.0% | |
| AAGCAATACATCGAGAGTGG+AGG | - | chr7.1:3462865-3462884 | MS.gene050920:CDS | 45.0% | |
| ACGTACCACTTATACAGGTC+CGG | - | chr7.1:3462298-3462317 | MS.gene050920:intron | 45.0% | |
| ACTAACTGAAGTCGGAGCAT+CGG | + | chr7.1:3459104-3459123 | None:intergenic | 45.0% | |
| AGCTAGCTCATGAGAAAGGT+TGG | + | chr7.1:3460689-3460708 | None:intergenic | 45.0% | |
| CACGCAACAGGCAAATTAAG+AGG | + | chr7.1:3461307-3461326 | None:intergenic | 45.0% | |
| CCACCAATCCTACCAAAAGA+AGG | - | chr7.1:3462086-3462105 | MS.gene050920:intron | 45.0% | |
| CCCTGTGGATAAAACCCATA+TGG | - | chr7.1:3460364-3460383 | MS.gene050920:intron | 45.0% | |
| CGCATCACCTCTTTGATCTT+AGG | - | chr7.1:3460894-3460913 | MS.gene050920:intron | 45.0% | |
| CTTCTTGTGAGAGCCAAGAA+GGG | + | chr7.1:3462151-3462170 | None:intergenic | 45.0% | |
| GAGAAACCGAGTTCGATTTC+TGG | + | chr7.1:3461837-3461856 | None:intergenic | 45.0% | |
| GCCTTTGTACTTGAAGCATG+TGG | + | chr7.1:3462125-3462144 | None:intergenic | 45.0% | |
| GGCAGAAACAATTCTTGACC+AGG | + | chr7.1:3461816-3461835 | None:intergenic | 45.0% | |
| GGGTGAGACAAGAGATATGA+TGG | - | chr7.1:3459982-3460001 | MS.gene050920:intron | 45.0% | |
| GGTACGTGAATGATGCACAA+GGG | + | chr7.1:3462285-3462304 | None:intergenic | 45.0% | |
| GTACGTGAATGATGCACAAG+GGG | + | chr7.1:3462284-3462303 | None:intergenic | 45.0% | |
| TAAATGGGGAAAGAGCCGTA+AGG | + | chr7.1:3461389-3461408 | None:intergenic | 45.0% | |
| TCCCAAACGATTTGTCCTAG+AGG | - | chr7.1:3461855-3461874 | MS.gene050920:intron | 45.0% | |
| TCTCGAAGGTAAGTAAAGCC+TGG | - | chr7.1:3461795-3461814 | MS.gene050920:intron | 45.0% | |
| TCTTCTTGTGAGAGCCAAGA+AGG | + | chr7.1:3462152-3462171 | None:intergenic | 45.0% | |
| TGATATCCTCAGCAGCTTCT+TGG | + | chr7.1:3462957-3462976 | None:intergenic | 45.0% | |
| TGGTACGTGAATGATGCACA+AGG | + | chr7.1:3462286-3462305 | None:intergenic | 45.0% | |
| TTCACGGCTTTCCTGAACTT+TGG | - | chr7.1:3458996-3459015 | MS.gene050920:CDS | 45.0% | |
| ! | ACGCCTTCTTTTGGTAGGAT+TGG | + | chr7.1:3462092-3462111 | None:intergenic | 45.0% |
| ! | CCTTCTTTTGGTAGGATTGG+TGG | + | chr7.1:3462089-3462108 | None:intergenic | 45.0% |
| ! | GAGATATGATGGGAGTTGTC+AGG | - | chr7.1:3459993-3460012 | MS.gene050920:intron | 45.0% |
| ! | GATGCTGCTTATGGTAGTCT+TGG | + | chr7.1:3460834-3460853 | None:intergenic | 45.0% |
| ! | GTATCACGCCTTCTTTTGGT+AGG | + | chr7.1:3462097-3462116 | None:intergenic | 45.0% |
| !! | AAATTGTTTTGCCCTTGGGC+TGG | - | chr7.1:3462483-3462502 | MS.gene050920:intron | 45.0% |
| !! | CAAGGGGCACCTAGTTAATT+TGG | + | chr7.1:3462268-3462287 | None:intergenic | 45.0% |
| !! | CCCATATGGGTTTTATCCAC+AGG | + | chr7.1:3460368-3460387 | None:intergenic | 45.0% |
| !! | CTCCTCTAGGACAAATCGTT+TGG | + | chr7.1:3461860-3461879 | None:intergenic | 45.0% |
| !! | CTCTTAATTTGCCTGTTGCG+TGG | - | chr7.1:3461305-3461324 | MS.gene050920:intron | 45.0% |
| !! | CTTCCATTTTTCCTGGTTCC+TGG | + | chr7.1:3462001-3462020 | None:intergenic | 45.0% |
| !! | GTAGTTGGGTTGTTGCTTTC+TGG | + | chr7.1:3461194-3461213 | None:intergenic | 45.0% |
| !!! | TAAAATTTATACTTTTTTTA+AGG | + | chr7.1:3459838-3459857 | None:intergenic | 5.0% |
| AAAGCTCGCATGCCATCAAC+AGG | + | chr7.1:3459319-3459338 | None:intergenic | 50.0% | |
| AATCCAGAGTTCGGTCTCGA+AGG | - | chr7.1:3461781-3461800 | MS.gene050920:intron | 50.0% | |
| ACTTATACAGGTCCGGTCGA+AGG | - | chr7.1:3462305-3462324 | MS.gene050920:intron | 50.0% | |
| AGGAGTAGAGCACAGAACAG+TGG | - | chr7.1:3458910-3458929 | MS.gene050920:CDS | 50.0% | |
| CAACAACCAAGAAGCTGCTG+AGG | - | chr7.1:3462948-3462967 | MS.gene050920:CDS | 50.0% | |
| CATGAGCAACGAGGAAGACT+TGG | + | chr7.1:3459189-3459208 | None:intergenic | 50.0% | |
| CCTGTTGTCCTGTTCCTTCA+CGG | - | chr7.1:3458980-3458999 | MS.gene050920:CDS | 50.0% | |
| CTTCACCAAGGAAAACCCTG+TGG | - | chr7.1:3460349-3460368 | MS.gene050920:intron | 50.0% | |
| CTTCCTCGTTGCTCATGACT+GGG | - | chr7.1:3459192-3459211 | MS.gene050920:intron | 50.0% | |
| CTTGGTCCAGCTTCTTGTGA+TGG | + | chr7.1:3460816-3460835 | None:intergenic | 50.0% | |
| GTGCCAGGAACCAGGAAAAA+TGG | - | chr7.1:3461995-3462014 | MS.gene050920:intron | 50.0% | |
| TCACCTGTGATGAACGTCAC+TGG | + | chr7.1:3462814-3462833 | None:intergenic | 50.0% | |
| TCTTCCTCGTTGCTCATGAC+TGG | - | chr7.1:3459191-3459210 | MS.gene050920:intron | 50.0% | |
| TTACCTTCGAGACCGAACTC+TGG | + | chr7.1:3461787-3461806 | None:intergenic | 50.0% | |
| TTCCTCGTTGCTCATGACTG+GGG | - | chr7.1:3459193-3459212 | MS.gene050920:intron | 50.0% | |
| TTCGACCGGACCTGTATAAG+TGG | + | chr7.1:3462306-3462325 | None:intergenic | 50.0% | |
| TTGTGAGAGCCAAGAAGGGA+GGG | + | chr7.1:3462147-3462166 | None:intergenic | 50.0% | |
| ! | TTTTCCTGGTTCCTGGCACA+TGG | + | chr7.1:3461994-3462013 | None:intergenic | 50.0% |
| !! | CGCCAAGAGTACCAAAGTTC+AGG | + | chr7.1:3459010-3459029 | None:intergenic | 50.0% |
| !! | GATGGCATGCGAGCTTTGTT+TGG | - | chr7.1:3459322-3459341 | MS.gene050920:intron | 50.0% |
| !! | GTTGCTCTCATCGACTCACT+CGG | - | chr7.1:3459157-3459176 | MS.gene050920:intron | 50.0% |
| AGCAACAGCACGGTAACCGA+GGG | + | chr7.1:3459056-3459075 | None:intergenic | 55.0% | |
| ATTGGGAGCTCACTGCAGCA+TGG | - | chr7.1:3462767-3462786 | MS.gene050920:CDS | 55.0% | |
| CAATCCATGTGCCAGGAACC+AGG | - | chr7.1:3461987-3462006 | MS.gene050920:intron | 55.0% | |
| CAGGAAAGCCGTGAAGGAAC+AGG | + | chr7.1:3458991-3459010 | None:intergenic | 55.0% | |
| CCCAGGTTTGAACCTTCGAC+CGG | + | chr7.1:3462320-3462339 | None:intergenic | 55.0% | |
| CCGGTCGAAGGTTCAAACCT+GGG | - | chr7.1:3462317-3462336 | MS.gene050920:intron | 55.0% | |
| CCGTGAAGGAACAGGACAAC+AGG | + | chr7.1:3458983-3459002 | None:intergenic | 55.0% | |
| CTTCATAGCCTGCTTGACCC+AGG | + | chr7.1:3462337-3462356 | None:intergenic | 55.0% | |
| CTTGTGAGAGCCAAGAAGGG+AGG | + | chr7.1:3462148-3462167 | None:intergenic | 55.0% | |
| GCTCCAGATCTCCGTGGATA+CGG | - | chr7.1:3459073-3459092 | MS.gene050920:CDS | 55.0% | |
| GGTTCAAACCTGGGTCAAGC+AGG | - | chr7.1:3462326-3462345 | MS.gene050920:intron | 55.0% | |
| GTACAAAGGCCCTCCCTTCT+TGG | - | chr7.1:3462135-3462154 | MS.gene050920:intron | 55.0% | |
| GTGCCAGTGACGTTCATCAC+AGG | - | chr7.1:3462808-3462827 | MS.gene050920:CDS | 55.0% | |
| TCACCGTATCCACGGAGATC+TGG | + | chr7.1:3459079-3459098 | None:intergenic | 55.0% | |
| TCCGGTCGAAGGTTCAAACC+TGG | - | chr7.1:3462316-3462335 | MS.gene050920:intron | 55.0% | |
| ! | ACTGGGGTGCCATGATTGGT+TGG | - | chr7.1:3459209-3459228 | MS.gene050920:intron | 55.0% |
| ! | CATGACTGGGGTGCCATGAT+TGG | - | chr7.1:3459205-3459224 | MS.gene050920:intron | 55.0% |
| ! | GGAGATCTGGAGCAACAGCA+CGG | + | chr7.1:3459066-3459085 | None:intergenic | 55.0% |
| !! | CATCGGTGTCACCGTATCCA+CGG | + | chr7.1:3459087-3459106 | None:intergenic | 55.0% |
| CACCCCAGTCATGAGCAACG+AGG | + | chr7.1:3459198-3459217 | None:intergenic | 60.0% | |
| CTCTTGGCGCCACCAGATTG+CGG | - | chr7.1:3459021-3459040 | MS.gene050920:CDS | 60.0% | |
| GAGCAACAGCACGGTAACCG+AGG | + | chr7.1:3459057-3459076 | None:intergenic | 60.0% | |
| GAGCTCACTGCAGCATGGAC+TGG | - | chr7.1:3462772-3462791 | MS.gene050920:CDS | 60.0% | |
| GCTGTTGCTCCAGATCTCCG+TGG | - | chr7.1:3459067-3459086 | MS.gene050920:CDS | 60.0% | |
| ACAAGTGCAGGGCCAGCCCA+AGG | + | chr7.1:3462498-3462517 | None:intergenic | 65.0% | |
| AGCCGAGAGCCGCAATCTGG+TGG | + | chr7.1:3459033-3459052 | None:intergenic | 65.0% | |
| ATTGCGGCTCTCGGCTCCCT+CGG | - | chr7.1:3459037-3459056 | MS.gene050920:CDS | 65.0% | |
| CAAGTGCAGGGCCAGCCCAA+GGG | + | chr7.1:3462497-3462516 | None:intergenic | 65.0% | |
| CGCCACCAGATTGCGGCTCT+CGG | - | chr7.1:3459028-3459047 | MS.gene050920:CDS | 65.0% | |
| GGGAGCCGAGAGCCGCAATC+TGG | + | chr7.1:3459036-3459055 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 3458905 | 3463011 | 3458905 | ID=MS.gene050920 |
| chr7.1 | mRNA | 3458905 | 3463011 | 3458905 | ID=MS.gene050920.t1;Parent=MS.gene050920 |
| chr7.1 | exon | 3462544 | 3463011 | 3462544 | ID=MS.gene050920.t1.exon1;Parent=MS.gene050920.t1 |
| chr7.1 | CDS | 3462544 | 3463011 | 3462544 | ID=cds.MS.gene050920.t1;Parent=MS.gene050920.t1 |
| chr7.1 | exon | 3459670 | 3459914 | 3459670 | ID=MS.gene050920.t1.exon2;Parent=MS.gene050920.t1 |
| chr7.1 | CDS | 3459670 | 3459914 | 3459670 | ID=cds.MS.gene050920.t1;Parent=MS.gene050920.t1 |
| chr7.1 | exon | 3458905 | 3459151 | 3458905 | ID=MS.gene050920.t1.exon3;Parent=MS.gene050920.t1 |
| chr7.1 | CDS | 3458905 | 3459151 | 3458905 | ID=cds.MS.gene050920.t1;Parent=MS.gene050920.t1 |
| Gene Sequence |
| Protein sequence |
