Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050921.t1 | XP_013450482.1 | 95.3 | 319 | 15 | 0 | 1 | 319 | 1 | 319 | 4.80E-178 | 633.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050921.t1 | I6YGS0 | 39.4 | 320 | 174 | 8 | 7 | 316 | 7 | 316 | 1.5e-58 | 228.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050921.t1 | A0A072UFD9 | 95.3 | 319 | 15 | 0 | 1 | 319 | 1 | 319 | 3.5e-178 | 633.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050921 | MS.gene072513 | 0.84124 | 5.36E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene050921 | MS.gene76453 | PPI |
| MS.gene035367 | MS.gene050921 | PPI |
| MS.gene050921 | MS.gene012063 | PPI |
| MS.gene050921 | MS.gene035369 | PPI |
| MS.gene050921 | MS.gene071504 | PPI |
| MS.gene050921 | MS.gene035373 | PPI |
| MS.gene050921 | MS.gene07001 | PPI |
| MS.gene050921 | MS.gene066361 | PPI |
| MS.gene066360 | MS.gene050921 | PPI |
| MS.gene050921 | MS.gene035371 | PPI |
| MS.gene89620 | MS.gene050921 | PPI |
| MS.gene050921 | MS.gene071502 | PPI |
| MS.gene050921 | MS.gene071500 | PPI |
| MS.gene050921 | MS.gene041604 | PPI |
| MS.gene050921 | MS.gene77823 | PPI |
| MS.gene050921 | MS.gene025707 | PPI |
| MS.gene050921 | MS.gene22955 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050921.t1 | MTR_7g112963 | 95.298 | 319 | 15 | 0 | 1 | 319 | 1 | 319 | 0.0 | 629 |
| MS.gene050921.t1 | MTR_7g112960 | 90.282 | 319 | 31 | 0 | 1 | 319 | 1 | 319 | 0.0 | 603 |
| MS.gene050921.t1 | MTR_7g112970 | 88.715 | 319 | 33 | 1 | 1 | 319 | 1 | 316 | 0.0 | 586 |
| MS.gene050921.t1 | MTR_7g113020 | 79.310 | 319 | 66 | 0 | 1 | 319 | 1 | 319 | 0.0 | 531 |
| MS.gene050921.t1 | MTR_7g113050 | 77.882 | 321 | 67 | 2 | 1 | 319 | 1 | 319 | 0.0 | 519 |
| MS.gene050921.t1 | MTR_7g113030 | 76.803 | 319 | 74 | 0 | 1 | 319 | 1 | 319 | 0.0 | 519 |
| MS.gene050921.t1 | MTR_7g113010 | 85.765 | 281 | 40 | 0 | 1 | 281 | 1 | 281 | 0.0 | 517 |
| MS.gene050921.t1 | MTR_7g112620 | 76.803 | 319 | 74 | 0 | 1 | 319 | 1 | 319 | 0.0 | 515 |
| MS.gene050921.t1 | MTR_7g112615 | 76.489 | 319 | 75 | 0 | 1 | 319 | 1 | 319 | 0.0 | 513 |
| MS.gene050921.t1 | MTR_4g005160 | 67.077 | 325 | 98 | 5 | 1 | 319 | 1 | 322 | 7.71e-161 | 451 |
| MS.gene050921.t1 | MTR_4g120240 | 62.617 | 321 | 116 | 3 | 1 | 319 | 37 | 355 | 3.98e-148 | 421 |
| MS.gene050921.t1 | MTR_7g108825 | 61.875 | 320 | 118 | 3 | 1 | 319 | 1 | 317 | 2.01e-143 | 407 |
| MS.gene050921.t1 | MTR_7g113050 | 77.083 | 240 | 51 | 2 | 1 | 238 | 1 | 238 | 7.92e-135 | 382 |
| MS.gene050921.t1 | MTR_7g112615 | 75.630 | 238 | 58 | 0 | 1 | 238 | 1 | 238 | 7.15e-134 | 380 |
| MS.gene050921.t1 | MTR_8g076680 | 47.988 | 323 | 156 | 5 | 1 | 319 | 3 | 317 | 1.15e-107 | 317 |
| MS.gene050921.t1 | MTR_7g112615 | 81.714 | 175 | 29 | 1 | 1 | 172 | 1 | 175 | 1.31e-101 | 296 |
| MS.gene050921.t1 | MTR_7g108825 | 59.833 | 239 | 92 | 3 | 1 | 238 | 1 | 236 | 4.63e-99 | 291 |
| MS.gene050921.t1 | MTR_1g083480 | 75.472 | 159 | 35 | 2 | 1 | 156 | 1 | 158 | 9.43e-86 | 255 |
| MS.gene050921.t1 | MTR_8g076680 | 47.934 | 242 | 116 | 3 | 1 | 238 | 3 | 238 | 1.09e-82 | 250 |
| MS.gene050921.t1 | MTR_7g112910 | 49.402 | 251 | 68 | 7 | 72 | 319 | 1 | 195 | 1.81e-68 | 212 |
| MS.gene050921.t1 | MTR_4g089060 | 35.826 | 321 | 191 | 6 | 1 | 318 | 1 | 309 | 5.65e-65 | 207 |
| MS.gene050921.t1 | MTR_2g090240 | 35.202 | 321 | 194 | 6 | 1 | 318 | 1 | 310 | 5.17e-64 | 205 |
| MS.gene050921.t1 | MTR_4g089040 | 35.514 | 321 | 192 | 6 | 1 | 318 | 1 | 309 | 7.92e-64 | 204 |
| MS.gene050921.t1 | MTR_2g090245 | 35.514 | 321 | 193 | 7 | 1 | 318 | 1 | 310 | 1.94e-63 | 203 |
| MS.gene050921.t1 | MTR_4g089060 | 33.333 | 348 | 190 | 7 | 1 | 318 | 1 | 336 | 9.01e-60 | 194 |
| MS.gene050921.t1 | MTR_3g024250 | 81.132 | 106 | 20 | 0 | 47 | 152 | 2 | 107 | 3.59e-56 | 179 |
| MS.gene050921.t1 | MTR_4g089060 | 37.768 | 233 | 136 | 3 | 1 | 231 | 1 | 226 | 1.97e-54 | 177 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050921.t1 | AT3G05600 | 63.385 | 325 | 112 | 4 | 1 | 319 | 1 | 324 | 1.61e-154 | 436 |
| MS.gene050921.t1 | AT4G02340 | 60.312 | 320 | 122 | 3 | 1 | 319 | 1 | 316 | 2.24e-145 | 412 |
| MS.gene050921.t1 | AT4G15960 | 53.846 | 325 | 143 | 3 | 1 | 319 | 51 | 374 | 1.61e-128 | 372 |
| MS.gene050921.t1 | AT2G26740 | 60.559 | 322 | 120 | 4 | 4 | 319 | 1 | 321 | 3.10e-128 | 369 |
| MS.gene050921.t1 | AT2G26750 | 58.567 | 321 | 127 | 4 | 4 | 319 | 1 | 320 | 2.06e-123 | 357 |
| MS.gene050921.t1 | AT3G05600 | 65.574 | 244 | 77 | 4 | 1 | 238 | 1 | 243 | 1.17e-115 | 334 |
| MS.gene050921.t1 | AT4G15955 | 51.385 | 325 | 122 | 5 | 5 | 319 | 6 | 304 | 2.45e-111 | 325 |
| MS.gene050921.t1 | AT3G51000 | 48.903 | 319 | 156 | 6 | 4 | 319 | 5 | 319 | 2.39e-107 | 316 |
| MS.gene050921.t1 | AT4G15955 | 60.116 | 173 | 59 | 2 | 5 | 167 | 6 | 178 | 2.06e-72 | 222 |
| MS.gene050921.t1 | AT4G15955 | 57.803 | 173 | 63 | 2 | 5 | 167 | 6 | 178 | 2.36e-68 | 211 |
Find 91 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATAGGCTTTGATTCTTTC+AGG | 0.119767 | 7.1:+3466369 | None:intergenic |
| CAAGAAAGATGTGCCAAATT+TGG | 0.205231 | 7.1:-3464528 | MS.gene050921:CDS |
| ATAACCACTTCCTCCAAATT+TGG | 0.220764 | 7.1:+3464515 | None:intergenic |
| CCATCAACAGGTTTCACTTT+TGG | 0.231114 | 7.1:+3466315 | None:intergenic |
| ATGAGATAATATGCCTTCTT+TGG | 0.231977 | 7.1:+3465388 | None:intergenic |
| TGATTTCCTCGGCAGCTTCT+TGG | 0.237229 | 7.1:+3464465 | None:intergenic |
| GATTTAGTTTACACTTCTTT+TGG | 0.261386 | 7.1:-3464581 | MS.gene050921:CDS |
| CGCCACCAGATTGCTGCTCT+TGG | 0.265149 | 7.1:-3466591 | MS.gene050921:CDS |
| GTGACAGGAACCCGGGAAAA+TGG | 0.290473 | 7.1:-3465492 | MS.gene050921:intron |
| GTACAATGCCCCTCCCTTCC+TGG | 0.297800 | 7.1:-3465352 | MS.gene050921:CDS |
| CTTCCTTGTAGCTCATGATT+GGG | 0.316992 | 7.1:-3466427 | MS.gene050921:CDS |
| GAAGATTGTGTAACTACTAA+TGG | 0.366861 | 7.1:+3466503 | None:intergenic |
| TCTTCCTTGTAGCTCATGAT+TGG | 0.373039 | 7.1:-3466428 | MS.gene050921:CDS |
| CGCCAAGAGTACCAGAGTTC+AGG | 0.381681 | 7.1:+3466612 | None:intergenic |
| CCAAAAGTGAAACCTGTTGA+TGG | 0.389532 | 7.1:-3466315 | MS.gene050921:CDS |
| TCGCCGTAACCACGGAGATC+TGG | 0.394426 | 7.1:+3466543 | None:intergenic |
| TTTGAAAAGACAGGATTTAG+TGG | 0.395852 | 7.1:-3465293 | MS.gene050921:CDS |
| ATGCCTTCTTTGGGCAGGAT+TGG | 0.397843 | 7.1:+3465398 | None:intergenic |
| TTTGGATTTCTGGGTAAATA+CGG | 0.407798 | 7.1:+3466333 | None:intergenic |
| CCTTCTTTGGGCAGGATTGG+TGG | 0.408975 | 7.1:+3465401 | None:intergenic |
| ACCGCTCTCGATGTATTGTT+TGG | 0.413172 | 7.1:+3464556 | None:intergenic |
| TTATTATATCTGCAGATTCC+AGG | 0.414957 | 7.1:-3466268 | MS.gene050921:intron |
| GCTTCCAAATTTGAAAAGAC+AGG | 0.423519 | 7.1:-3465302 | MS.gene050921:CDS |
| GAAGTTCATCATAGGTGATC+TGG | 0.427789 | 7.1:-3464603 | MS.gene050921:CDS |
| TGAGATAATATGCCTTCTTT+GGG | 0.432022 | 7.1:+3465389 | None:intergenic |
| CATAGGCTTTGATTCTTTCA+GGG | 0.432762 | 7.1:+3466370 | None:intergenic |
| TTCCTGAACTCTGGTACTCT+TGG | 0.435109 | 7.1:-3466614 | MS.gene050921:CDS |
| CATGATTGGGGTGCCATCAT+TGG | 0.436037 | 7.1:-3466414 | MS.gene050921:CDS |
| GACATCTTCTTGCGAGAGCC+AGG | 0.445878 | 7.1:+3465334 | None:intergenic |
| GCTCCAGATCTCCGTGGTTA+CGG | 0.448429 | 7.1:-3466546 | MS.gene050921:CDS |
| TAGTTACACAATCTTCCATT+TGG | 0.454984 | 7.1:-3466496 | MS.gene050921:CDS |
| ATGCTTACAAGTCGTAATCC+TGG | 0.458065 | 7.1:-3465425 | MS.gene050921:CDS |
| GGGAGCCAAGAGCAGCAATC+TGG | 0.464162 | 7.1:+3466586 | None:intergenic |
| ACAGCTCGCATTCCATCAAC+AGG | 0.466950 | 7.1:+3466303 | None:intergenic |
| CCACCAATCCTGCCCAAAGA+AGG | 0.467921 | 7.1:-3465401 | MS.gene050921:CDS |
| ATTGCTGCTCTTGGCTCCCT+CGG | 0.472828 | 7.1:-3466582 | MS.gene050921:CDS |
| GAGCTCACGGCAGCATGGAC+CGG | 0.477692 | 7.1:-3464647 | MS.gene050921:CDS |
| TTGGGCAGGATTGGTGGCCC+AGG | 0.482553 | 7.1:+3465407 | None:intergenic |
| GTACCAGTGAAGTTCATCAT+AGG | 0.483596 | 7.1:-3464611 | MS.gene050921:CDS |
| AAAATGCATATTGCTGAGAA+AGG | 0.485302 | 7.1:-3466672 | MS.gene050921:CDS |
| CAACGATGTCACCCACCAAA+TGG | 0.489958 | 7.1:+3466481 | None:intergenic |
| TGCGAGAGCCAGGAAGGGAG+GGG | 0.493557 | 7.1:+3465344 | None:intergenic |
| TGTGCCAAATTTGGAGGAAG+TGG | 0.500333 | 7.1:-3464519 | MS.gene050921:CDS |
| TTCACGGCTTTCCTGAACTC+TGG | 0.502205 | 7.1:-3466623 | MS.gene050921:CDS |
| ATAATATGCCTTCTTTGGGC+AGG | 0.504415 | 7.1:+3465393 | None:intergenic |
| ATGGCCTTGATCAACAGTTC+TGG | 0.508152 | 7.1:+3465446 | None:intergenic |
| CCGTGAAGGAACAAAACAAC+AGG | 0.513488 | 7.1:+3466639 | None:intergenic |
| TGCTTACAAGTCGTAATCCT+GGG | 0.514561 | 7.1:-3465424 | MS.gene050921:CDS |
| CAATCCATGTGACAGGAACC+CGG | 0.522947 | 7.1:-3465500 | MS.gene050921:intron |
| GATGGAATGCGAGCTGTGTA+TGG | 0.523423 | 7.1:-3466297 | MS.gene050921:CDS |
| TGGTACTTTAATTTGTGCTC+CGG | 0.523809 | 7.1:+3464628 | None:intergenic |
| TACACAATCTTCCATTTGGT+GGG | 0.524970 | 7.1:-3466492 | MS.gene050921:CDS |
| GAAAGATGTGCCAAATTTGG+AGG | 0.528499 | 7.1:-3464525 | MS.gene050921:CDS |
| TTGCGAGAGCCAGGAAGGGA+GGG | 0.531398 | 7.1:+3465343 | None:intergenic |
| GTGTAACTACTAATGGAAGC+TGG | 0.533389 | 7.1:+3466510 | None:intergenic |
| ACAAAGATACCAACCAATGA+TGG | 0.536291 | 7.1:+3466401 | None:intergenic |
| CACCCCAATCATGAGCTACA+AGG | 0.540560 | 7.1:+3466424 | None:intergenic |
| TTCCTTGTAGCTCATGATTG+GGG | 0.541290 | 7.1:-3466426 | MS.gene050921:CDS |
| TTACACAATCTTCCATTTGG+TGG | 0.541545 | 7.1:-3466493 | MS.gene050921:CDS |
| GGGCATTGTACTTGAAACAC+TGG | 0.545502 | 7.1:+3465364 | None:intergenic |
| ATTGCTGAGAAAGGAAAAGA+AGG | 0.548522 | 7.1:-3466663 | MS.gene050921:CDS |
| CTTGCGAGAGCCAGGAAGGG+AGG | 0.550388 | 7.1:+3465342 | None:intergenic |
| GAGGAAGTGGTTATACAGAA+AGG | 0.551271 | 7.1:-3464506 | MS.gene050921:CDS |
| AATCCATGTGACAGGAACCC+GGG | 0.551511 | 7.1:-3465499 | MS.gene050921:intron |
| GTTGCTCTCATCGACTCACT+TGG | 0.552314 | 7.1:-3466462 | MS.gene050921:CDS |
| TCACCTATGATGAACTTCAC+TGG | 0.553123 | 7.1:+3464608 | None:intergenic |
| ATGGAAGCTGAAATTGCTAA+AGG | 0.559276 | 7.1:-3465473 | MS.gene050921:CDS |
| TAGTCCAGAACTGTTGATCA+AGG | 0.560762 | 7.1:-3465450 | MS.gene050921:CDS |
| CGGAACACTGAGACAAACAT+AGG | 0.567344 | 7.1:+3466353 | None:intergenic |
| CACAGAACAGTGGAAGTGAA+TGG | 0.567993 | 7.1:-3466699 | MS.gene050921:CDS |
| ATTGGGGTGCCATCATTGGT+TGG | 0.574625 | 7.1:-3466410 | MS.gene050921:CDS |
| AGCCAAGAGCAGCAATCTGG+TGG | 0.583237 | 7.1:+3466589 | None:intergenic |
| AATGTGATTACTGATTTCCT+CGG | 0.590060 | 7.1:+3464454 | None:intergenic |
| TCTTCTTGCGAGAGCCAGGA+AGG | 0.593368 | 7.1:+3465338 | None:intergenic |
| ACTAATGGAAGCTGGAGCAT+CGG | 0.595210 | 7.1:+3466518 | None:intergenic |
| CATCGGTGTCGCCGTAACCA+CGG | 0.597704 | 7.1:+3466535 | None:intergenic |
| ATTGGGAGCTCACGGCAGCA+TGG | 0.611461 | 7.1:-3464652 | MS.gene050921:CDS |
| GAAAAGACAGGATTTAGTGG+TGG | 0.611798 | 7.1:-3465290 | MS.gene050921:CDS |
| TAACAGAAATTGGGAGCTCA+CGG | 0.614147 | 7.1:-3464660 | MS.gene050921:intron |
| CAACAACCAAGAAGCTGCCG+AGG | 0.622555 | 7.1:-3464471 | MS.gene050921:CDS |
| AGAGTTCAGGAAAGCCGTGA+AGG | 0.628117 | 7.1:+3466625 | None:intergenic |
| AGGATTACGACTTGTAAGCA+TGG | 0.633672 | 7.1:+3465427 | None:intergenic |
| GGCATTGTACTTGAAACACT+GGG | 0.645498 | 7.1:+3465365 | None:intergenic |
| CTTCTTGCGAGAGCCAGGAA+GGG | 0.648277 | 7.1:+3465339 | None:intergenic |
| GAGCAACAGCACAGTAACCG+AGG | 0.650868 | 7.1:+3466565 | None:intergenic |
| AAACAATACATCGAGAGCGG+TGG | 0.675908 | 7.1:-3464554 | MS.gene050921:CDS |
| AGGAATAGAACACAGAACAG+TGG | 0.676997 | 7.1:-3466709 | MS.gene050921:CDS |
| AGCAACAGCACAGTAACCGA+GGG | 0.678247 | 7.1:+3466566 | None:intergenic |
| AGTGGTTATACAGAAAGGTG+TGG | 0.683843 | 7.1:-3464501 | MS.gene050921:CDS |
| ACCAAACAATACATCGAGAG+CGG | 0.693164 | 7.1:-3464557 | MS.gene050921:CDS |
| GCTGTTGCTCCAGATCTCCG+TGG | 0.735697 | 7.1:-3466552 | MS.gene050921:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATATATCAATTCTTAAAA+TGG | + | chr7.1:3465307-3465326 | None:intergenic | 10.0% |
| !! | AATTAAATCCTAAATTCATT+TGG | - | chr7.1:3465366-3465385 | MS.gene050921:CDS | 15.0% |
| !!! | TTAGGATTTAATTTTATGTA+CGG | + | chr7.1:3465359-3465378 | None:intergenic | 15.0% |
| !!! | TTTTGAACTTGATAAATAAA+TGG | - | chr7.1:3465413-3465432 | MS.gene050921:CDS | 15.0% |
| !! | ATGAGTTTAATCTAAACTTT+AGG | - | chr7.1:3465390-3465409 | MS.gene050921:CDS | 20.0% |
| !! | TAATCAATAAGCTCAAATTA+CGG | + | chr7.1:3465111-3465130 | None:intergenic | 20.0% |
| !! | TATAAATTACAAGAGAATGA+TGG | + | chr7.1:3465965-3465984 | None:intergenic | 20.0% |
| !! | TTATAATAATTGCTGAGATA+AGG | - | chr7.1:3466207-3466226 | MS.gene050921:intron | 20.0% |
| !!! | AGACATTTTAAGTTTTTCTT+TGG | + | chr7.1:3465168-3465187 | None:intergenic | 20.0% |
| !!! | GTTATACACTAACTAAATTT+TGG | + | chr7.1:3465477-3465496 | None:intergenic | 20.0% |
| !!! | GTTTTATGTTAACAGAAATT+GGG | - | chr7.1:3466475-3466494 | MS.gene050921:CDS | 20.0% |
| !!! | TGTTTTATGTTAACAGAAAT+TGG | - | chr7.1:3466474-3466493 | MS.gene050921:CDS | 20.0% |
| !!! | TTAACATAAAACAAAAGCAT+TGG | + | chr7.1:3466467-3466486 | None:intergenic | 20.0% |
| !!! | TTTTAAAATCAAGGATTAAG+AGG | + | chr7.1:3466165-3466184 | None:intergenic | 20.0% |
| ! | AAAAATGAAAAATACGAACC+TGG | + | chr7.1:3464897-3464916 | None:intergenic | 25.0% |
| ! | AACTCATACCAAATGAATTT+AGG | + | chr7.1:3465377-3465396 | None:intergenic | 25.0% |
| ! | ACAATCTTAAATTTGATGGA+AGG | - | chr7.1:3466385-3466404 | MS.gene050921:CDS | 25.0% |
| ! | ATTGGATTACAAATTTGACA+AGG | + | chr7.1:3465453-3465472 | None:intergenic | 25.0% |
| ! | ATTTATACAAAACCAATCCA+AGG | - | chr7.1:3465978-3465997 | MS.gene050921:intron | 25.0% |
| ! | CAAAAACCAAAAGATAAAGT+GGG | + | chr7.1:3465088-3465107 | None:intergenic | 25.0% |
| ! | GATTAATTCTACTTGAACTA+TGG | - | chr7.1:3464948-3464967 | MS.gene050921:intron | 25.0% |
| ! | TCTGACAATCTTAAATTTGA+TGG | - | chr7.1:3466381-3466400 | MS.gene050921:CDS | 25.0% |
| ! | TGGTTCAACAAATATCTATA+TGG | + | chr7.1:3465287-3465306 | None:intergenic | 25.0% |
| !! | AAATCCTGTCTTTTCAAATT+TGG | + | chr7.1:3465849-3465868 | None:intergenic | 25.0% |
| !! | CATCTAGTTAATTTGGAAAA+AGG | + | chr7.1:3465934-3465953 | None:intergenic | 25.0% |
| !! | TGAGCTTATTGATTATAAAG+TGG | - | chr7.1:3465116-3465135 | MS.gene050921:intron | 25.0% |
| !!! | AAGTTTTAGTTTTTTGCTTG+TGG | - | chr7.1:3465000-3465019 | MS.gene050921:intron | 25.0% |
| !!! | CACTAACTAAATTTTGGTAT+TGG | + | chr7.1:3465471-3465490 | None:intergenic | 25.0% |
| !!! | GATTTAGTTTACACTTCTTT+TGG | - | chr7.1:3466563-3466582 | MS.gene050921:CDS | 25.0% |
| AAAATGCATATTGCTGAGAA+AGG | - | chr7.1:3464472-3464491 | MS.gene050921:CDS | 30.0% | |
| ATGAGATAATATGCCTTCTT+TGG | + | chr7.1:3465759-3465778 | None:intergenic | 30.0% | |
| CAAGAGACATCTAGTTAATT+TGG | + | chr7.1:3465941-3465960 | None:intergenic | 30.0% | |
| CTTGATAAATAAATGGAGAC+TGG | - | chr7.1:3465420-3465439 | MS.gene050921:CDS | 30.0% | |
| GAAGATTGTGTAACTACTAA+TGG | + | chr7.1:3464644-3464663 | None:intergenic | 30.0% | |
| GCAAAAACCAAAAGATAAAG+TGG | + | chr7.1:3465089-3465108 | None:intergenic | 30.0% | |
| TAGTTACACAATCTTCCATT+TGG | - | chr7.1:3464648-3464667 | MS.gene050921:CDS | 30.0% | |
| TGAGATAATATGCCTTCTTT+GGG | + | chr7.1:3465758-3465777 | None:intergenic | 30.0% | |
| TTATATCATGAGTGATGTGT+AGG | + | chr7.1:3466267-3466286 | None:intergenic | 30.0% | |
| TTATTATATCTGCAGATTCC+AGG | - | chr7.1:3464876-3464895 | MS.gene050921:intron | 30.0% | |
| TTTGAAAAGACAGGATTTAG+TGG | - | chr7.1:3465851-3465870 | MS.gene050921:intron | 30.0% | |
| ! | AGATTGTCAGATGATTTTGA+AGG | + | chr7.1:3466372-3466391 | None:intergenic | 30.0% |
| ! | TAAATAAGACTCTGAGAAGT+TGG | - | chr7.1:3465563-3465582 | MS.gene050921:intron | 30.0% |
| ! | TATTCACCCACTTTATCTTT+TGG | - | chr7.1:3465079-3465098 | MS.gene050921:intron | 30.0% |
| ! | TTTGGATTTCTGGGTAAATA+CGG | + | chr7.1:3464814-3464833 | None:intergenic | 30.0% |
| !! | AATGTGATTACTGATTTCCT+CGG | + | chr7.1:3466693-3466712 | None:intergenic | 30.0% |
| !!! | GTTTTTTGCTTGTGGTATAA+TGG | - | chr7.1:3465008-3465027 | MS.gene050921:intron | 30.0% |
| AATTATGCAACGCCAACTTA+AGG | + | chr7.1:3466094-3466113 | None:intergenic | 35.0% | |
| ACAAAGATACCAACCAATGA+TGG | + | chr7.1:3464746-3464765 | None:intergenic | 35.0% | |
| ATAACCACTTCCTCCAAATT+TGG | + | chr7.1:3466632-3466651 | None:intergenic | 35.0% | |
| ATGGAAGCTGAAATTGCTAA+AGG | - | chr7.1:3465671-3465690 | MS.gene050921:intron | 35.0% | |
| ATGTACGGTGTATAATCAAG+AGG | + | chr7.1:3465344-3465363 | None:intergenic | 35.0% | |
| ATTATGCAACGCCAACTTAA+GGG | + | chr7.1:3466093-3466112 | None:intergenic | 35.0% | |
| ATTGCTGAGAAAGGAAAAGA+AGG | - | chr7.1:3464481-3464500 | MS.gene050921:CDS | 35.0% | |
| CAAGAAAGATGTGCCAAATT+TGG | - | chr7.1:3466616-3466635 | MS.gene050921:CDS | 35.0% | |
| GCTTCCAAATTTGAAAAGAC+AGG | - | chr7.1:3465842-3465861 | MS.gene050921:intron | 35.0% | |
| TACACAATCTTCCATTTGGT+GGG | - | chr7.1:3464652-3464671 | MS.gene050921:CDS | 35.0% | |
| TGGACATCTGTAACTAACTT+GGG | - | chr7.1:3466059-3466078 | MS.gene050921:intron | 35.0% | |
| TGGCGTTGCATAATTCTATT+TGG | - | chr7.1:3466099-3466118 | MS.gene050921:intron | 35.0% | |
| TTACACAATCTTCCATTTGG+TGG | - | chr7.1:3464651-3464670 | MS.gene050921:CDS | 35.0% | |
| ! | AATTTCAGCTTCCATTTTCC+CGG | + | chr7.1:3465666-3465685 | None:intergenic | 35.0% |
| ! | ACATAGGCTTTGATTCTTTC+AGG | + | chr7.1:3464778-3464797 | None:intergenic | 35.0% |
| ! | CAATTTGAAAGCATGTCTGA+CGG | + | chr7.1:3466320-3466339 | None:intergenic | 35.0% |
| ! | CATAGGCTTTGATTCTTTCA+GGG | + | chr7.1:3464777-3464796 | None:intergenic | 35.0% |
| ! | TACCATTTTCTTCGGTTGTT+GGG | + | chr7.1:3465517-3465536 | None:intergenic | 35.0% |
| ! | TCAGCTAGTACCATTTTCTT+CGG | + | chr7.1:3465525-3465544 | None:intergenic | 35.0% |
| ! | TTTTGCTTGTGGTATAATGG+AGG | - | chr7.1:3465011-3465030 | MS.gene050921:intron | 35.0% |
| !! | AGGTTTCACTTTTGGATTTC+TGG | + | chr7.1:3464824-3464843 | None:intergenic | 35.0% |
| !! | ATTCTCGTATTGACTAACTG+TGG | - | chr7.1:3466032-3466051 | MS.gene050921:intron | 35.0% |
| !! | GGTTTCACTTTTGGATTTCT+GGG | + | chr7.1:3464823-3464842 | None:intergenic | 35.0% |
| !! | TGGTACTTTAATTTGTGCTC+CGG | + | chr7.1:3466519-3466538 | None:intergenic | 35.0% |
| AACCCAACAACCGAAGAAAA+TGG | - | chr7.1:3465512-3465531 | MS.gene050921:intron | 40.0% | |
| ACCAAACAATACATCGAGAG+CGG | - | chr7.1:3466587-3466606 | MS.gene050921:CDS | 40.0% | |
| AGGAATAGAACACAGAACAG+TGG | - | chr7.1:3464435-3464454 | MS.gene050921:CDS | 40.0% | |
| AGGATTACGACTTGTAAGCA+TGG | + | chr7.1:3465720-3465739 | None:intergenic | 40.0% | |
| AGTGGTTATACAGAAAGGTG+TGG | - | chr7.1:3466643-3466662 | MS.gene050921:CDS | 40.0% | |
| ATAATATGCCTTCTTTGGGC+AGG | + | chr7.1:3465754-3465773 | None:intergenic | 40.0% | |
| ATGCTTACAAGTCGTAATCC+TGG | - | chr7.1:3465719-3465738 | MS.gene050921:intron | 40.0% | |
| CCAAAAGTGAAACCTGTTGA+TGG | - | chr7.1:3464829-3464848 | MS.gene050921:intron | 40.0% | |
| CGTCAGACATGCTTTCAAAT+TGG | - | chr7.1:3466318-3466337 | MS.gene050921:CDS | 40.0% | |
| CTTCCTTGTAGCTCATGATT+GGG | - | chr7.1:3464717-3464736 | MS.gene050921:intron | 40.0% | |
| GAAAAGACAGGATTTAGTGG+TGG | - | chr7.1:3465854-3465873 | MS.gene050921:intron | 40.0% | |
| GAAAGATGTGCCAAATTTGG+AGG | - | chr7.1:3466619-3466638 | MS.gene050921:CDS | 40.0% | |
| GAAGTTCATCATAGGTGATC+TGG | - | chr7.1:3466541-3466560 | MS.gene050921:CDS | 40.0% | |
| GAGGAAGTGGTTATACAGAA+AGG | - | chr7.1:3466638-3466657 | MS.gene050921:CDS | 40.0% | |
| GGCATTGTACTTGAAACACT+GGG | + | chr7.1:3465782-3465801 | None:intergenic | 40.0% | |
| GTACCAGTGAAGTTCATCAT+AGG | - | chr7.1:3466533-3466552 | MS.gene050921:CDS | 40.0% | |
| GTGGACATCTGTAACTAACT+TGG | - | chr7.1:3466058-3466077 | MS.gene050921:intron | 40.0% | |
| GTGTAACTACTAATGGAAGC+TGG | + | chr7.1:3464637-3464656 | None:intergenic | 40.0% | |
| TAACAGAAATTGGGAGCTCA+CGG | - | chr7.1:3466484-3466503 | MS.gene050921:CDS | 40.0% | |
| TAGTCCAGAACTGTTGATCA+AGG | - | chr7.1:3465694-3465713 | MS.gene050921:intron | 40.0% | |
| TCACCTATGATGAACTTCAC+TGG | + | chr7.1:3466539-3466558 | None:intergenic | 40.0% | |
| TCTTCCTTGTAGCTCATGAT+TGG | - | chr7.1:3464716-3464735 | MS.gene050921:intron | 40.0% | |
| TGCTTACAAGTCGTAATCCT+GGG | - | chr7.1:3465720-3465739 | MS.gene050921:intron | 40.0% | |
| TTCCTTGTAGCTCATGATTG+GGG | - | chr7.1:3464718-3464737 | MS.gene050921:intron | 40.0% | |
| TTCGGTTGTTGGGTTTCAAT+TGG | + | chr7.1:3465507-3465526 | None:intergenic | 40.0% | |
| ! | ATTTCAGCTTCCATTTTCCC+GGG | + | chr7.1:3465665-3465684 | None:intergenic | 40.0% |
| ! | CCATCAACAGGTTTCACTTT+TGG | + | chr7.1:3464832-3464851 | None:intergenic | 40.0% |
| ! | GTACCATTTTCTTCGGTTGT+TGG | + | chr7.1:3465518-3465537 | None:intergenic | 40.0% |
| ! | TATTGACTAACTGTGGTGAG+TGG | - | chr7.1:3466039-3466058 | MS.gene050921:intron | 40.0% |
| !! | TCACATGGATTGGAATTGGA+TGG | + | chr7.1:3465636-3465655 | None:intergenic | 40.0% |
| !!! | CCTGTTGTTTTGTTCCTTCA+CGG | - | chr7.1:3464505-3464524 | MS.gene050921:CDS | 40.0% |
| AAACAATACATCGAGAGCGG+TGG | - | chr7.1:3466590-3466609 | MS.gene050921:CDS | 45.0% | |
| ACCGCTCTCGATGTATTGTT+TGG | + | chr7.1:3466591-3466610 | None:intergenic | 45.0% | |
| ACTAATGGAAGCTGGAGCAT+CGG | + | chr7.1:3464629-3464648 | None:intergenic | 45.0% | |
| CACAGAACAGTGGAAGTGAA+TGG | - | chr7.1:3464445-3464464 | MS.gene050921:CDS | 45.0% | |
| CATATTCTCCATGACCGAGA+GGG | + | chr7.1:3466010-3466029 | None:intergenic | 45.0% | |
| CCAATTCCAATCCATGTGAC+AGG | - | chr7.1:3465637-3465656 | MS.gene050921:intron | 45.0% | |
| CCGTGAAGGAACAAAACAAC+AGG | + | chr7.1:3464508-3464527 | None:intergenic | 45.0% | |
| CGGAACACTGAGACAAACAT+AGG | + | chr7.1:3464794-3464813 | None:intergenic | 45.0% | |
| GGGTTGTTTGACCCTTAAGT+TGG | - | chr7.1:3466079-3466098 | MS.gene050921:intron | 45.0% | |
| TCATATTCTCCATGACCGAG+AGG | + | chr7.1:3466011-3466030 | None:intergenic | 45.0% | |
| TGTGCCAAATTTGGAGGAAG+TGG | - | chr7.1:3466625-3466644 | MS.gene050921:CDS | 45.0% | |
| TTCCTGAACTCTGGTACTCT+TGG | - | chr7.1:3464530-3464549 | MS.gene050921:CDS | 45.0% | |
| ! | ATGGCCTTGATCAACAGTTC+TGG | + | chr7.1:3465701-3465720 | None:intergenic | 45.0% |
| ! | GGGCATTGTACTTGAAACAC+TGG | + | chr7.1:3465783-3465802 | None:intergenic | 45.0% |
| !! | CCTGTCACATGGATTGGAAT+TGG | + | chr7.1:3465640-3465659 | None:intergenic | 45.0% |
| !! | TTGTAGGTATCGATGGTGGT+AGG | + | chr7.1:3466296-3466315 | None:intergenic | 45.0% |
| !!! | ATTAATTATTTTTAAAATCA+AGG | + | chr7.1:3466174-3466193 | None:intergenic | 5.0% |
| !!! | TTGATTTTAAAAATAATTAA+TGG | - | chr7.1:3466173-3466192 | MS.gene050921:intron | 5.0% |
| AAGCATGTCTGACGGCTTGT+AGG | + | chr7.1:3466312-3466331 | None:intergenic | 50.0% | |
| AATCCATGTGACAGGAACCC+GGG | - | chr7.1:3465645-3465664 | MS.gene050921:intron | 50.0% | |
| ACAGCTCGCATTCCATCAAC+AGG | + | chr7.1:3464844-3464863 | None:intergenic | 50.0% | |
| AGAGGGTTGGAACCTTGGAT+TGG | + | chr7.1:3465993-3466012 | None:intergenic | 50.0% | |
| AGAGTTCAGGAAAGCCGTGA+AGG | + | chr7.1:3464522-3464541 | None:intergenic | 50.0% | |
| AGCAACAGCACAGTAACCGA+GGG | + | chr7.1:3464581-3464600 | None:intergenic | 50.0% | |
| AGTGATGTGTAGGCTCACGA+AGG | + | chr7.1:3466257-3466276 | None:intergenic | 50.0% | |
| ATCCAAGGTTCCAACCCTCT+CGG | - | chr7.1:3465993-3466012 | MS.gene050921:intron | 50.0% | |
| ATGCCTTCTTTGGGCAGGAT+TGG | + | chr7.1:3465749-3465768 | None:intergenic | 50.0% | |
| CAACGATGTCACCCACCAAA+TGG | + | chr7.1:3464666-3464685 | None:intergenic | 50.0% | |
| CAATCCATGTGACAGGAACC+CGG | - | chr7.1:3465644-3465663 | MS.gene050921:intron | 50.0% | |
| CACCCCAATCATGAGCTACA+AGG | + | chr7.1:3464723-3464742 | None:intergenic | 50.0% | |
| GATGGAATGCGAGCTGTGTA+TGG | - | chr7.1:3464847-3464866 | MS.gene050921:intron | 50.0% | |
| TGATTTCCTCGGCAGCTTCT+TGG | + | chr7.1:3466682-3466701 | None:intergenic | 50.0% | |
| TTCACGGCTTTCCTGAACTC+TGG | - | chr7.1:3464521-3464540 | MS.gene050921:CDS | 50.0% | |
| ! | ATTGGGGTGCCATCATTGGT+TGG | - | chr7.1:3464734-3464753 | MS.gene050921:intron | 50.0% |
| ! | CATGATTGGGGTGCCATCAT+TGG | - | chr7.1:3464730-3464749 | MS.gene050921:intron | 50.0% |
| !! | GTTGCTCTCATCGACTCACT+TGG | - | chr7.1:3464682-3464701 | MS.gene050921:intron | 50.0% |
| !! | TGACGGCTTGTAGGTATCGA+TGG | + | chr7.1:3466303-3466322 | None:intergenic | 50.0% |
| AGCCAAGAGCAGCAATCTGG+TGG | + | chr7.1:3464558-3464577 | None:intergenic | 55.0% | |
| ATTGCTGCTCTTGGCTCCCT+CGG | - | chr7.1:3464562-3464581 | MS.gene050921:CDS | 55.0% | |
| CAACAACCAAGAAGCTGCCG+AGG | - | chr7.1:3466673-3466692 | MS.gene050921:CDS | 55.0% | |
| CCACCAATCCTGCCCAAAGA+AGG | - | chr7.1:3465743-3465762 | MS.gene050921:intron | 55.0% | |
| CCTTCTTTGGGCAGGATTGG+TGG | + | chr7.1:3465746-3465765 | None:intergenic | 55.0% | |
| CGGGTTCCTGTCACATGGAT+TGG | + | chr7.1:3465646-3465665 | None:intergenic | 55.0% | |
| CTTCTTGCGAGAGCCAGGAA+GGG | + | chr7.1:3465808-3465827 | None:intergenic | 55.0% | |
| GACATCTTCTTGCGAGAGCC+AGG | + | chr7.1:3465813-3465832 | None:intergenic | 55.0% | |
| GAGCAACAGCACAGTAACCG+AGG | + | chr7.1:3464582-3464601 | None:intergenic | 55.0% | |
| GCTCCAGATCTCCGTGGTTA+CGG | - | chr7.1:3464598-3464617 | MS.gene050921:CDS | 55.0% | |
| GTGACAGGAACCCGGGAAAA+TGG | - | chr7.1:3465652-3465671 | MS.gene050921:intron | 55.0% | |
| TCTTCTTGCGAGAGCCAGGA+AGG | + | chr7.1:3465809-3465828 | None:intergenic | 55.0% | |
| TTCTCCATGACCGAGAGGGT+TGG | + | chr7.1:3466006-3466025 | None:intergenic | 55.0% | |
| TTTCCCGGGTTCCTGTCACA+TGG | + | chr7.1:3465651-3465670 | None:intergenic | 55.0% | |
| !! | CGCCAAGAGTACCAGAGTTC+AGG | + | chr7.1:3464535-3464554 | None:intergenic | 55.0% |
| !! | CGGCTTGTAGGTATCGATGG+TGG | + | chr7.1:3466300-3466319 | None:intergenic | 55.0% |
| ATTGGGAGCTCACGGCAGCA+TGG | - | chr7.1:3466492-3466511 | MS.gene050921:CDS | 60.0% | |
| CGCCACCAGATTGCTGCTCT+TGG | - | chr7.1:3464553-3464572 | MS.gene050921:CDS | 60.0% | |
| GACCGAGAGGGTTGGAACCT+TGG | + | chr7.1:3465998-3466017 | None:intergenic | 60.0% | |
| GCTGTTGCTCCAGATCTCCG+TGG | - | chr7.1:3464592-3464611 | MS.gene050921:CDS | 60.0% | |
| GGGAGCCAAGAGCAGCAATC+TGG | + | chr7.1:3464561-3464580 | None:intergenic | 60.0% | |
| GGTTCCAACCCTCTCGGTCA+TGG | - | chr7.1:3465999-3466018 | MS.gene050921:intron | 60.0% | |
| GTACAATGCCCCTCCCTTCC+TGG | - | chr7.1:3465792-3465811 | MS.gene050921:intron | 60.0% | |
| TCGCCGTAACCACGGAGATC+TGG | + | chr7.1:3464604-3464623 | None:intergenic | 60.0% | |
| TTGCGAGAGCCAGGAAGGGA+GGG | + | chr7.1:3465804-3465823 | None:intergenic | 60.0% | |
| !! | CATCGGTGTCGCCGTAACCA+CGG | + | chr7.1:3464612-3464631 | None:intergenic | 60.0% |
| CTTGCGAGAGCCAGGAAGGG+AGG | + | chr7.1:3465805-3465824 | None:intergenic | 65.0% | |
| GAGCTCACGGCAGCATGGAC+CGG | - | chr7.1:3466497-3466516 | MS.gene050921:CDS | 65.0% | |
| TGCGAGAGCCAGGAAGGGAG+GGG | + | chr7.1:3465803-3465822 | None:intergenic | 65.0% | |
| ! | TTGGGCAGGATTGGTGGCCC+AGG | + | chr7.1:3465740-3465759 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 3464430 | 3466736 | 3464430 | ID=MS.gene050921 |
| chr7.1 | mRNA | 3464430 | 3466736 | 3464430 | ID=MS.gene050921.t1;Parent=MS.gene050921 |
| chr7.1 | exon | 3466269 | 3466736 | 3466269 | ID=MS.gene050921.t1.exon1;Parent=MS.gene050921.t1 |
| chr7.1 | CDS | 3466269 | 3466736 | 3466269 | ID=cds.MS.gene050921.t1;Parent=MS.gene050921.t1 |
| chr7.1 | exon | 3465263 | 3465507 | 3465263 | ID=MS.gene050921.t1.exon2;Parent=MS.gene050921.t1 |
| chr7.1 | CDS | 3465263 | 3465507 | 3465263 | ID=cds.MS.gene050921.t1;Parent=MS.gene050921.t1 |
| chr7.1 | exon | 3464430 | 3464676 | 3464430 | ID=MS.gene050921.t1.exon3;Parent=MS.gene050921.t1 |
| chr7.1 | CDS | 3464430 | 3464676 | 3464430 | ID=cds.MS.gene050921.t1;Parent=MS.gene050921.t1 |
| Gene Sequence |
| Protein sequence |
