Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072513.t1 | XP_013450482.1 | 95.3 | 319 | 15 | 0 | 1 | 319 | 1 | 319 | 1.30E-178 | 635.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072513.t1 | I6YGS0 | 39.1 | 320 | 175 | 8 | 7 | 316 | 7 | 316 | 1.9e-58 | 227.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072513.t1 | A0A072UFD9 | 95.3 | 319 | 15 | 0 | 1 | 319 | 1 | 319 | 9.1e-179 | 635.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050921 | MS.gene072513 | 0.84124 | 5.36E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene072513 | MS.gene77823 | PPI |
| MS.gene072513 | MS.gene025707 | PPI |
| MS.gene072513 | MS.gene22955 | PPI |
| MS.gene072513 | MS.gene76453 | PPI |
| MS.gene072513 | MS.gene89620 | PPI |
| MS.gene072513 | MS.gene012063 | PPI |
| MS.gene072513 | MS.gene066360 | PPI |
| MS.gene072513 | MS.gene035367 | PPI |
| MS.gene072513 | MS.gene035369 | PPI |
| MS.gene072513 | MS.gene071504 | PPI |
| MS.gene072513 | MS.gene035373 | PPI |
| MS.gene072513 | MS.gene07001 | PPI |
| MS.gene072513 | MS.gene066361 | PPI |
| MS.gene072513 | MS.gene035371 | PPI |
| MS.gene072513 | MS.gene071502 | PPI |
| MS.gene072513 | MS.gene071500 | PPI |
| MS.gene072513 | MS.gene041604 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072513.t1 | MTR_7g112963 | 95.298 | 319 | 15 | 0 | 1 | 319 | 1 | 319 | 0.0 | 630 |
| MS.gene072513.t1 | MTR_7g112960 | 90.282 | 319 | 31 | 0 | 1 | 319 | 1 | 319 | 0.0 | 604 |
| MS.gene072513.t1 | MTR_7g112970 | 88.715 | 319 | 33 | 1 | 1 | 319 | 1 | 316 | 0.0 | 587 |
| MS.gene072513.t1 | MTR_7g113020 | 79.310 | 319 | 66 | 0 | 1 | 319 | 1 | 319 | 0.0 | 531 |
| MS.gene072513.t1 | MTR_7g113010 | 86.121 | 281 | 39 | 0 | 1 | 281 | 1 | 281 | 0.0 | 520 |
| MS.gene072513.t1 | MTR_7g113050 | 77.882 | 321 | 67 | 2 | 1 | 319 | 1 | 319 | 0.0 | 520 |
| MS.gene072513.t1 | MTR_7g113030 | 76.803 | 319 | 74 | 0 | 1 | 319 | 1 | 319 | 0.0 | 520 |
| MS.gene072513.t1 | MTR_7g112620 | 76.489 | 319 | 75 | 0 | 1 | 319 | 1 | 319 | 0.0 | 514 |
| MS.gene072513.t1 | MTR_7g112615 | 76.489 | 319 | 75 | 0 | 1 | 319 | 1 | 319 | 0.0 | 514 |
| MS.gene072513.t1 | MTR_4g005160 | 67.077 | 325 | 98 | 5 | 1 | 319 | 1 | 322 | 3.79e-161 | 452 |
| MS.gene072513.t1 | MTR_4g120240 | 62.617 | 321 | 116 | 3 | 1 | 319 | 37 | 355 | 2.09e-148 | 421 |
| MS.gene072513.t1 | MTR_7g108825 | 61.875 | 320 | 118 | 3 | 1 | 319 | 1 | 317 | 7.60e-144 | 408 |
| MS.gene072513.t1 | MTR_7g113050 | 77.500 | 240 | 50 | 2 | 1 | 238 | 1 | 238 | 6.75e-136 | 385 |
| MS.gene072513.t1 | MTR_7g112615 | 76.050 | 238 | 57 | 0 | 1 | 238 | 1 | 238 | 8.10e-135 | 382 |
| MS.gene072513.t1 | MTR_8g076680 | 47.368 | 323 | 158 | 5 | 1 | 319 | 3 | 317 | 7.46e-106 | 312 |
| MS.gene072513.t1 | MTR_7g112615 | 82.286 | 175 | 28 | 1 | 1 | 172 | 1 | 175 | 1.04e-102 | 298 |
| MS.gene072513.t1 | MTR_7g108825 | 60.251 | 239 | 91 | 3 | 1 | 238 | 1 | 236 | 3.85e-100 | 294 |
| MS.gene072513.t1 | MTR_1g083480 | 76.101 | 159 | 34 | 2 | 1 | 156 | 1 | 158 | 1.04e-86 | 258 |
| MS.gene072513.t1 | MTR_8g076680 | 47.521 | 242 | 117 | 3 | 1 | 238 | 3 | 238 | 1.88e-81 | 247 |
| MS.gene072513.t1 | MTR_7g112910 | 49.402 | 251 | 68 | 7 | 72 | 319 | 1 | 195 | 7.28e-69 | 213 |
| MS.gene072513.t1 | MTR_4g089060 | 35.826 | 321 | 191 | 6 | 1 | 318 | 1 | 309 | 8.88e-65 | 207 |
| MS.gene072513.t1 | MTR_2g090240 | 35.202 | 321 | 194 | 6 | 1 | 318 | 1 | 310 | 8.13e-64 | 204 |
| MS.gene072513.t1 | MTR_4g089040 | 35.514 | 321 | 192 | 6 | 1 | 318 | 1 | 309 | 1.30e-63 | 204 |
| MS.gene072513.t1 | MTR_2g090245 | 35.514 | 321 | 193 | 7 | 1 | 318 | 1 | 310 | 2.80e-63 | 203 |
| MS.gene072513.t1 | MTR_4g089060 | 33.333 | 348 | 190 | 7 | 1 | 318 | 1 | 336 | 1.51e-59 | 194 |
| MS.gene072513.t1 | MTR_3g024250 | 82.075 | 106 | 19 | 0 | 47 | 152 | 2 | 107 | 3.39e-57 | 181 |
| MS.gene072513.t1 | MTR_4g089060 | 37.768 | 233 | 136 | 3 | 1 | 231 | 1 | 226 | 1.60e-54 | 178 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072513.t1 | AT3G05600 | 63.077 | 325 | 113 | 4 | 1 | 319 | 1 | 324 | 7.20e-154 | 434 |
| MS.gene072513.t1 | AT4G02340 | 60.312 | 320 | 122 | 3 | 1 | 319 | 1 | 316 | 1.09e-145 | 413 |
| MS.gene072513.t1 | AT4G15960 | 53.846 | 325 | 143 | 3 | 1 | 319 | 51 | 374 | 4.11e-128 | 370 |
| MS.gene072513.t1 | AT2G26740 | 60.248 | 322 | 121 | 4 | 4 | 319 | 1 | 321 | 1.59e-127 | 367 |
| MS.gene072513.t1 | AT2G26750 | 58.255 | 321 | 128 | 4 | 4 | 319 | 1 | 320 | 6.93e-123 | 355 |
| MS.gene072513.t1 | AT3G05600 | 65.574 | 244 | 77 | 4 | 1 | 238 | 1 | 243 | 1.25e-115 | 334 |
| MS.gene072513.t1 | AT4G15955 | 51.692 | 325 | 121 | 5 | 5 | 319 | 6 | 304 | 1.91e-111 | 325 |
| MS.gene072513.t1 | AT3G51000 | 48.589 | 319 | 157 | 6 | 4 | 319 | 5 | 319 | 7.84e-107 | 315 |
| MS.gene072513.t1 | AT4G15955 | 60.694 | 173 | 58 | 2 | 5 | 167 | 6 | 178 | 8.00e-73 | 223 |
| MS.gene072513.t1 | AT4G15955 | 58.382 | 173 | 62 | 2 | 5 | 167 | 6 | 178 | 8.22e-69 | 213 |
Find 93 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATAGGCTTTGATTCTTTC+AGG | 0.119767 | 7.3:+4006542 | None:intergenic |
| CAAGAAAGATGTGCCAAATT+TGG | 0.205231 | 7.3:-4004703 | MS.gene072513:CDS |
| ATAACCACTTCCTCCAAATT+TGG | 0.220764 | 7.3:+4004690 | None:intergenic |
| CCATCAACAGGTTTCACTTT+TGG | 0.231114 | 7.3:+4006488 | None:intergenic |
| ATGAGATAATATGCCTTCTT+TGG | 0.231977 | 7.3:+4005563 | None:intergenic |
| GATTTAGTTTACACTTCTTT+TGG | 0.261386 | 7.3:-4004756 | MS.gene072513:CDS |
| CGCCACCAGATTGCTGCTCT+TGG | 0.265149 | 7.3:-4006764 | MS.gene072513:CDS |
| GTGACAGGAACCCGGGAAAA+TGG | 0.290473 | 7.3:-4005667 | MS.gene072513:intron |
| GTACAATGCCCCTCCCTTCC+TGG | 0.297800 | 7.3:-4005527 | MS.gene072513:CDS |
| CTTCCTTGTAGCTCATGATT+GGG | 0.316992 | 7.3:-4006600 | MS.gene072513:CDS |
| TGATTTCCTCGGCAGCTTCT+CGG | 0.332479 | 7.3:+4004640 | None:intergenic |
| GAAGATTGTGTAACTACTAA+TGG | 0.366861 | 7.3:+4006676 | None:intergenic |
| TCTTCCTTGTAGCTCATGAT+TGG | 0.373039 | 7.3:-4006601 | MS.gene072513:CDS |
| CGCCAAGAGTACCAGAGTTC+AGG | 0.381681 | 7.3:+4006785 | None:intergenic |
| CCAAAAGTGAAACCTGTTGA+TGG | 0.389532 | 7.3:-4006488 | MS.gene072513:CDS |
| TCGCCGTAACCACGGAGATC+TGG | 0.394426 | 7.3:+4006716 | None:intergenic |
| TTTGAAAAGACAGGATTTAG+TGG | 0.395852 | 7.3:-4005468 | MS.gene072513:CDS |
| ATGCCTTCTTTGGGCAGGAT+TGG | 0.397843 | 7.3:+4005573 | None:intergenic |
| TTTGGATTTCTGGGTAAATA+CGG | 0.407798 | 7.3:+4006506 | None:intergenic |
| CCTTCTTTGGGCAGGATTGG+TGG | 0.408975 | 7.3:+4005576 | None:intergenic |
| ACCGCTCTCGATGTATTGTT+TGG | 0.413172 | 7.3:+4004731 | None:intergenic |
| TTATTATATCTGCAGATTCC+AGG | 0.414957 | 7.3:-4006441 | MS.gene072513:intron |
| GCTTCCAAATTTGAAAAGAC+AGG | 0.423519 | 7.3:-4005477 | MS.gene072513:CDS |
| CCTGTTGTCCTGTTCCTTCA+CGG | 0.424309 | 7.3:-4006812 | MS.gene072513:CDS |
| GAAGTTCATCATAGGTGATC+TGG | 0.427789 | 7.3:-4004778 | MS.gene072513:CDS |
| TGAGATAATATGCCTTCTTT+GGG | 0.432022 | 7.3:+4005564 | None:intergenic |
| CATAGGCTTTGATTCTTTCA+GGG | 0.432762 | 7.3:+4006543 | None:intergenic |
| TTCCTGAACTCTGGTACTCT+TGG | 0.435109 | 7.3:-4006787 | MS.gene072513:CDS |
| CATGATTGGGGTGCCATCAT+TGG | 0.436037 | 7.3:-4006587 | MS.gene072513:CDS |
| GACATCTTCTTGCGAGAGCC+AGG | 0.445878 | 7.3:+4005509 | None:intergenic |
| GCTCCAGATCTCCGTGGTTA+CGG | 0.448429 | 7.3:-4006719 | MS.gene072513:CDS |
| TAGTTACACAATCTTCCATT+TGG | 0.454984 | 7.3:-4006669 | MS.gene072513:CDS |
| ATGCTTACAAGTCGTAATCC+TGG | 0.458065 | 7.3:-4005600 | MS.gene072513:CDS |
| CAGGAAAGCCGTGAAGGAAC+AGG | 0.460850 | 7.3:+4006804 | None:intergenic |
| GGGAGCCAAGAGCAGCAATC+TGG | 0.464162 | 7.3:+4006759 | None:intergenic |
| ACAGCTCGCATTCCATCAAC+AGG | 0.466950 | 7.3:+4006476 | None:intergenic |
| CCACCAATCCTGCCCAAAGA+AGG | 0.467921 | 7.3:-4005576 | MS.gene072513:CDS |
| ATTGCTGCTCTTGGCTCCCT+CGG | 0.472828 | 7.3:-4006755 | MS.gene072513:CDS |
| GAGCTCACGGCAGCATGGAC+CGG | 0.477692 | 7.3:-4004822 | MS.gene072513:CDS |
| CCGTGAAGGAACAGGACAAC+AGG | 0.481846 | 7.3:+4006812 | None:intergenic |
| TTGGGCAGGATTGGTGGCCC+AGG | 0.482553 | 7.3:+4005582 | None:intergenic |
| GTACCAGTGAAGTTCATCAT+AGG | 0.483596 | 7.3:-4004786 | MS.gene072513:CDS |
| AAAATGCATATTGCAGAGAA+AGG | 0.487741 | 7.3:-4006845 | MS.gene072513:CDS |
| CAACGATGTCACCCACCAAA+TGG | 0.489958 | 7.3:+4006654 | None:intergenic |
| TGCGAGAGCCAGGAAGGGAG+GGG | 0.493557 | 7.3:+4005519 | None:intergenic |
| TGTGCCAAATTTGGAGGAAG+TGG | 0.500333 | 7.3:-4004694 | MS.gene072513:CDS |
| TTCACGGCTTTCCTGAACTC+TGG | 0.502205 | 7.3:-4006796 | MS.gene072513:CDS |
| ATAATATGCCTTCTTTGGGC+AGG | 0.504415 | 7.3:+4005568 | None:intergenic |
| ATGGCCTTGATCAACAGTTC+TGG | 0.508152 | 7.3:+4005621 | None:intergenic |
| TGCTTACAAGTCGTAATCCT+GGG | 0.514561 | 7.3:-4005599 | MS.gene072513:CDS |
| CAATCCATGTGACAGGAACC+CGG | 0.522947 | 7.3:-4005675 | MS.gene072513:intron |
| GATGGAATGCGAGCTGTGTA+TGG | 0.523423 | 7.3:-4006470 | MS.gene072513:CDS |
| TGGTACTTTAATTTGTGCTC+CGG | 0.523809 | 7.3:+4004803 | None:intergenic |
| TACACAATCTTCCATTTGGT+GGG | 0.524970 | 7.3:-4006665 | MS.gene072513:CDS |
| GAAAGATGTGCCAAATTTGG+AGG | 0.528499 | 7.3:-4004700 | MS.gene072513:CDS |
| TTGCGAGAGCCAGGAAGGGA+GGG | 0.531398 | 7.3:+4005518 | None:intergenic |
| GTGTAACTACTAATGGAAGC+TGG | 0.533389 | 7.3:+4006683 | None:intergenic |
| ACAAAGATACCAACCAATGA+TGG | 0.536291 | 7.3:+4006574 | None:intergenic |
| CACCCCAATCATGAGCTACA+AGG | 0.540560 | 7.3:+4006597 | None:intergenic |
| TTCCTTGTAGCTCATGATTG+GGG | 0.541290 | 7.3:-4006599 | MS.gene072513:CDS |
| TTACACAATCTTCCATTTGG+TGG | 0.541545 | 7.3:-4006666 | MS.gene072513:CDS |
| GGGCATTGTACTTGAAACAC+TGG | 0.545502 | 7.3:+4005539 | None:intergenic |
| ATTGCAGAGAAAGGAAAAGA+AGG | 0.548522 | 7.3:-4006836 | MS.gene072513:CDS |
| CTTGCGAGAGCCAGGAAGGG+AGG | 0.550388 | 7.3:+4005517 | None:intergenic |
| GAGGAAGTGGTTATACAGAA+AGG | 0.551271 | 7.3:-4004681 | MS.gene072513:CDS |
| AATCCATGTGACAGGAACCC+GGG | 0.551511 | 7.3:-4005674 | MS.gene072513:intron |
| GTTGCTCTCATCGACTCACT+TGG | 0.552314 | 7.3:-4006635 | MS.gene072513:CDS |
| TCACCTATGATGAACTTCAC+TGG | 0.553123 | 7.3:+4004783 | None:intergenic |
| ATGGAAGCTGAAATTGCTAA+AGG | 0.559276 | 7.3:-4005648 | MS.gene072513:CDS |
| TAGTCCAGAACTGTTGATCA+AGG | 0.560762 | 7.3:-4005625 | MS.gene072513:CDS |
| CGGAACACTGAGACAAACAT+AGG | 0.567344 | 7.3:+4006526 | None:intergenic |
| CACAGAACAGTGGAAGTGAA+TGG | 0.567993 | 7.3:-4006872 | MS.gene072513:CDS |
| ATTGGGGTGCCATCATTGGT+TGG | 0.574625 | 7.3:-4006583 | MS.gene072513:CDS |
| AGCCAAGAGCAGCAATCTGG+TGG | 0.583237 | 7.3:+4006762 | None:intergenic |
| AATGTGATTACTGATTTCCT+CGG | 0.590060 | 7.3:+4004629 | None:intergenic |
| TCTTCTTGCGAGAGCCAGGA+AGG | 0.593368 | 7.3:+4005513 | None:intergenic |
| ACTAATGGAAGCTGGAGCAT+CGG | 0.595210 | 7.3:+4006691 | None:intergenic |
| CATCGGTGTCGCCGTAACCA+CGG | 0.597704 | 7.3:+4006708 | None:intergenic |
| CAACAACCGAGAAGCTGCCG+AGG | 0.602231 | 7.3:-4004646 | MS.gene072513:CDS |
| ATTGGGAGCTCACGGCAGCA+TGG | 0.611461 | 7.3:-4004827 | MS.gene072513:CDS |
| GAAAAGACAGGATTTAGTGG+TGG | 0.611798 | 7.3:-4005465 | MS.gene072513:CDS |
| TAACAGAAATTGGGAGCTCA+CGG | 0.614147 | 7.3:-4004835 | MS.gene072513:intron |
| AGAGTTCAGGAAAGCCGTGA+AGG | 0.628117 | 7.3:+4006798 | None:intergenic |
| AGGATTACGACTTGTAAGCA+TGG | 0.633672 | 7.3:+4005602 | None:intergenic |
| GGCATTGTACTTGAAACACT+GGG | 0.645498 | 7.3:+4005540 | None:intergenic |
| CTTCTTGCGAGAGCCAGGAA+GGG | 0.648277 | 7.3:+4005514 | None:intergenic |
| GAGCAACAGCACAGTAACCG+AGG | 0.650868 | 7.3:+4006738 | None:intergenic |
| AAACAATACATCGAGAGCGG+TGG | 0.675908 | 7.3:-4004729 | MS.gene072513:CDS |
| AGGAATAGAACACAGAACAG+TGG | 0.676997 | 7.3:-4006882 | MS.gene072513:CDS |
| AGCAACAGCACAGTAACCGA+GGG | 0.678247 | 7.3:+4006739 | None:intergenic |
| AGTGGTTATACAGAAAGGTG+TGG | 0.683843 | 7.3:-4004676 | MS.gene072513:CDS |
| ACCAAACAATACATCGAGAG+CGG | 0.693164 | 7.3:-4004732 | MS.gene072513:CDS |
| GCTGTTGCTCCAGATCTCCG+TGG | 0.735697 | 7.3:-4006725 | MS.gene072513:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATATATCAATTCTTAAAA+TGG | + | chr7.3:4005480-4005499 | None:intergenic | 10.0% |
| !! | AATTAAATCCTAAATTCATT+TGG | - | chr7.3:4005539-4005558 | MS.gene072513:CDS | 15.0% |
| !!! | TTAGGATTTAATTTTATGTA+CGG | + | chr7.3:4005532-4005551 | None:intergenic | 15.0% |
| !!! | TTTTGAACTTGATAAATAAA+TGG | - | chr7.3:4005586-4005605 | MS.gene072513:CDS | 15.0% |
| !! | ATGAGTTTAATCTAAACTTT+AGG | - | chr7.3:4005563-4005582 | MS.gene072513:CDS | 20.0% |
| !! | TAATCAATAAGCTCAAATTA+CGG | + | chr7.3:4005283-4005302 | None:intergenic | 20.0% |
| !! | TATAAATTACAAGAGAATGA+TGG | + | chr7.3:4006138-4006157 | None:intergenic | 20.0% |
| !! | TTATAATAATTGCTGAGATA+AGG | - | chr7.3:4006380-4006399 | MS.gene072513:intron | 20.0% |
| !!! | AGACATTTTAAGTTTTTCTT+TGG | + | chr7.3:4005340-4005359 | None:intergenic | 20.0% |
| !!! | GTTATACACTAACTAAATTT+TGG | + | chr7.3:4005650-4005669 | None:intergenic | 20.0% |
| !!! | GTTTTATGTTAACAGAAATT+GGG | - | chr7.3:4006648-4006667 | MS.gene072513:CDS | 20.0% |
| !!! | TGTTTTATGTTAACAGAAAT+TGG | - | chr7.3:4006647-4006666 | MS.gene072513:CDS | 20.0% |
| !!! | TTAACATAAAACAAAAGCAT+TGG | + | chr7.3:4006640-4006659 | None:intergenic | 20.0% |
| !!! | TTTTAAAATCAAGGATTAAG+AGG | + | chr7.3:4006338-4006357 | None:intergenic | 20.0% |
| ! | AAAAATGAAAAATACGAACC+TGG | + | chr7.3:4005072-4005091 | None:intergenic | 25.0% |
| ! | AACTCATACCAAATGAATTT+AGG | + | chr7.3:4005550-4005569 | None:intergenic | 25.0% |
| ! | ACAATCTTAAATTTGATGGA+AGG | - | chr7.3:4006558-4006577 | MS.gene072513:CDS | 25.0% |
| ! | ATTGGATTACAAATTTGACA+AGG | + | chr7.3:4005626-4005645 | None:intergenic | 25.0% |
| ! | ATTTATACAAAACCAATCCA+AGG | - | chr7.3:4006151-4006170 | MS.gene072513:intron | 25.0% |
| ! | CAAAAACCAAAAGATAAAGT+GGG | + | chr7.3:4005260-4005279 | None:intergenic | 25.0% |
| ! | GATTAATTCTACTTGAACTA+TGG | - | chr7.3:4005123-4005142 | MS.gene072513:intron | 25.0% |
| ! | TCTGACAATCTTAAATTTGA+TGG | - | chr7.3:4006554-4006573 | MS.gene072513:CDS | 25.0% |
| ! | TGGTTCAACAAATATCTATA+TGG | + | chr7.3:4005460-4005479 | None:intergenic | 25.0% |
| !! | AAATCCTGTCTTTTCAAATT+TGG | + | chr7.3:4006022-4006041 | None:intergenic | 25.0% |
| !! | CATCTAGTTAATTTGGAAAA+AGG | + | chr7.3:4006107-4006126 | None:intergenic | 25.0% |
| !! | TGAGCTTATTGATTATAAAG+TGG | - | chr7.3:4005288-4005307 | MS.gene072513:intron | 25.0% |
| !!! | AAGTTTTAGTTTTTTGCTTG+TGG | - | chr7.3:4005175-4005194 | MS.gene072513:intron | 25.0% |
| !!! | CACTAACTAAATTTTGGTAT+TGG | + | chr7.3:4005644-4005663 | None:intergenic | 25.0% |
| !!! | GATTTAGTTTACACTTCTTT+TGG | - | chr7.3:4006736-4006755 | MS.gene072513:CDS | 25.0% |
| AAAATGCATATTGCAGAGAA+AGG | - | chr7.3:4004647-4004666 | MS.gene072513:CDS | 30.0% | |
| ATGAGATAATATGCCTTCTT+TGG | + | chr7.3:4005932-4005951 | None:intergenic | 30.0% | |
| CAAGAGACATCTAGTTAATT+TGG | + | chr7.3:4006114-4006133 | None:intergenic | 30.0% | |
| CTTGATAAATAAATGGAGAC+TGG | - | chr7.3:4005593-4005612 | MS.gene072513:CDS | 30.0% | |
| GAAGATTGTGTAACTACTAA+TGG | + | chr7.3:4004819-4004838 | None:intergenic | 30.0% | |
| GCAAAAACCAAAAGATAAAG+TGG | + | chr7.3:4005261-4005280 | None:intergenic | 30.0% | |
| TAGTTACACAATCTTCCATT+TGG | - | chr7.3:4004823-4004842 | MS.gene072513:CDS | 30.0% | |
| TGAGATAATATGCCTTCTTT+GGG | + | chr7.3:4005931-4005950 | None:intergenic | 30.0% | |
| TTATATCATGAGTGATGTGT+AGG | + | chr7.3:4006440-4006459 | None:intergenic | 30.0% | |
| TTATTATATCTGCAGATTCC+AGG | - | chr7.3:4005051-4005070 | MS.gene072513:intron | 30.0% | |
| TTTGAAAAGACAGGATTTAG+TGG | - | chr7.3:4006024-4006043 | MS.gene072513:intron | 30.0% | |
| ! | AGATTGTCAGATGATTTTGA+AGG | + | chr7.3:4006545-4006564 | None:intergenic | 30.0% |
| ! | TAAATAAGACTCTGAGAAGT+TGG | - | chr7.3:4005736-4005755 | MS.gene072513:intron | 30.0% |
| ! | TATTCACCCACTTTATCTTT+TGG | - | chr7.3:4005251-4005270 | MS.gene072513:intron | 30.0% |
| ! | TTTGGATTTCTGGGTAAATA+CGG | + | chr7.3:4004989-4005008 | None:intergenic | 30.0% |
| !! | AATGTGATTACTGATTTCCT+CGG | + | chr7.3:4006866-4006885 | None:intergenic | 30.0% |
| !!! | GTTTTTTGCTTGTGGTATAA+TGG | - | chr7.3:4005183-4005202 | MS.gene072513:intron | 30.0% |
| AATTATGCAACGCCAACTTA+AGG | + | chr7.3:4006267-4006286 | None:intergenic | 35.0% | |
| ACAAAGATACCAACCAATGA+TGG | + | chr7.3:4004921-4004940 | None:intergenic | 35.0% | |
| ATAACCACTTCCTCCAAATT+TGG | + | chr7.3:4006805-4006824 | None:intergenic | 35.0% | |
| ATGGAAGCTGAAATTGCTAA+AGG | - | chr7.3:4005844-4005863 | MS.gene072513:intron | 35.0% | |
| ATGTACGGTGTATAATCAAG+AGG | + | chr7.3:4005517-4005536 | None:intergenic | 35.0% | |
| ATTATGCAACGCCAACTTAA+GGG | + | chr7.3:4006266-4006285 | None:intergenic | 35.0% | |
| ATTGCAGAGAAAGGAAAAGA+AGG | - | chr7.3:4004656-4004675 | MS.gene072513:CDS | 35.0% | |
| CAAGAAAGATGTGCCAAATT+TGG | - | chr7.3:4006789-4006808 | MS.gene072513:CDS | 35.0% | |
| GCTTCCAAATTTGAAAAGAC+AGG | - | chr7.3:4006015-4006034 | MS.gene072513:intron | 35.0% | |
| TACACAATCTTCCATTTGGT+GGG | - | chr7.3:4004827-4004846 | MS.gene072513:CDS | 35.0% | |
| TGGACATCTGTAACTAACTT+GGG | - | chr7.3:4006232-4006251 | MS.gene072513:intron | 35.0% | |
| TGGCGTTGCATAATTCTATT+TGG | - | chr7.3:4006272-4006291 | MS.gene072513:intron | 35.0% | |
| TTACACAATCTTCCATTTGG+TGG | - | chr7.3:4004826-4004845 | MS.gene072513:CDS | 35.0% | |
| ! | AATTTCAGCTTCCATTTTCC+CGG | + | chr7.3:4005839-4005858 | None:intergenic | 35.0% |
| ! | ACATAGGCTTTGATTCTTTC+AGG | + | chr7.3:4004953-4004972 | None:intergenic | 35.0% |
| ! | CAATTTGAAAGCATGTCTGA+CGG | + | chr7.3:4006493-4006512 | None:intergenic | 35.0% |
| ! | CATAGGCTTTGATTCTTTCA+GGG | + | chr7.3:4004952-4004971 | None:intergenic | 35.0% |
| ! | TACCATTTTCTTCGGTTGTT+GGG | + | chr7.3:4005690-4005709 | None:intergenic | 35.0% |
| ! | TCAGCTAGTACCATTTTCTT+CGG | + | chr7.3:4005698-4005717 | None:intergenic | 35.0% |
| ! | TTTTGCTTGTGGTATAATGG+AGG | - | chr7.3:4005186-4005205 | MS.gene072513:intron | 35.0% |
| !! | AGGTTTCACTTTTGGATTTC+TGG | + | chr7.3:4004999-4005018 | None:intergenic | 35.0% |
| !! | ATTCTCGTATTGACTAACTG+TGG | - | chr7.3:4006205-4006224 | MS.gene072513:intron | 35.0% |
| !! | GGTTTCACTTTTGGATTTCT+GGG | + | chr7.3:4004998-4005017 | None:intergenic | 35.0% |
| !! | TGGTACTTTAATTTGTGCTC+CGG | + | chr7.3:4006692-4006711 | None:intergenic | 35.0% |
| AACCCAACAACCGAAGAAAA+TGG | - | chr7.3:4005685-4005704 | MS.gene072513:intron | 40.0% | |
| ACCAAACAATACATCGAGAG+CGG | - | chr7.3:4006760-4006779 | MS.gene072513:CDS | 40.0% | |
| AGGAATAGAACACAGAACAG+TGG | - | chr7.3:4004610-4004629 | MS.gene072513:CDS | 40.0% | |
| AGGATTACGACTTGTAAGCA+TGG | + | chr7.3:4005893-4005912 | None:intergenic | 40.0% | |
| AGTGGTTATACAGAAAGGTG+TGG | - | chr7.3:4006816-4006835 | MS.gene072513:CDS | 40.0% | |
| ATAATATGCCTTCTTTGGGC+AGG | + | chr7.3:4005927-4005946 | None:intergenic | 40.0% | |
| ATGCTTACAAGTCGTAATCC+TGG | - | chr7.3:4005892-4005911 | MS.gene072513:intron | 40.0% | |
| CCAAAAGTGAAACCTGTTGA+TGG | - | chr7.3:4005004-4005023 | MS.gene072513:intron | 40.0% | |
| CTTCCTTGTAGCTCATGATT+GGG | - | chr7.3:4004892-4004911 | MS.gene072513:intron | 40.0% | |
| GAAAAGACAGGATTTAGTGG+TGG | - | chr7.3:4006027-4006046 | MS.gene072513:intron | 40.0% | |
| GAAAGATGTGCCAAATTTGG+AGG | - | chr7.3:4006792-4006811 | MS.gene072513:CDS | 40.0% | |
| GAAGTTCATCATAGGTGATC+TGG | - | chr7.3:4006714-4006733 | MS.gene072513:CDS | 40.0% | |
| GAGGAAGTGGTTATACAGAA+AGG | - | chr7.3:4006811-4006830 | MS.gene072513:CDS | 40.0% | |
| GGCATTGTACTTGAAACACT+GGG | + | chr7.3:4005955-4005974 | None:intergenic | 40.0% | |
| GTACCAGTGAAGTTCATCAT+AGG | - | chr7.3:4006706-4006725 | MS.gene072513:CDS | 40.0% | |
| GTGGACATCTGTAACTAACT+TGG | - | chr7.3:4006231-4006250 | MS.gene072513:intron | 40.0% | |
| GTGTAACTACTAATGGAAGC+TGG | + | chr7.3:4004812-4004831 | None:intergenic | 40.0% | |
| TAACAGAAATTGGGAGCTCA+CGG | - | chr7.3:4006657-4006676 | MS.gene072513:CDS | 40.0% | |
| TAGTCCAGAACTGTTGATCA+AGG | - | chr7.3:4005867-4005886 | MS.gene072513:intron | 40.0% | |
| TCACCTATGATGAACTTCAC+TGG | + | chr7.3:4006712-4006731 | None:intergenic | 40.0% | |
| TCTTCCTTGTAGCTCATGAT+TGG | - | chr7.3:4004891-4004910 | MS.gene072513:intron | 40.0% | |
| TGCTTACAAGTCGTAATCCT+GGG | - | chr7.3:4005893-4005912 | MS.gene072513:intron | 40.0% | |
| TTCCTTGTAGCTCATGATTG+GGG | - | chr7.3:4004893-4004912 | MS.gene072513:intron | 40.0% | |
| TTCGGTTGTTGGGTTTCAAT+TGG | + | chr7.3:4005680-4005699 | None:intergenic | 40.0% | |
| ! | ATTTCAGCTTCCATTTTCCC+GGG | + | chr7.3:4005838-4005857 | None:intergenic | 40.0% |
| ! | CCATCAACAGGTTTCACTTT+TGG | + | chr7.3:4005007-4005026 | None:intergenic | 40.0% |
| ! | GTACCATTTTCTTCGGTTGT+TGG | + | chr7.3:4005691-4005710 | None:intergenic | 40.0% |
| ! | TATTGACTAACTGTGGTGAG+TGG | - | chr7.3:4006212-4006231 | MS.gene072513:intron | 40.0% |
| !! | TCACATGGATTGGAATTGGA+TGG | + | chr7.3:4005809-4005828 | None:intergenic | 40.0% |
| AAACAATACATCGAGAGCGG+TGG | - | chr7.3:4006763-4006782 | MS.gene072513:CDS | 45.0% | |
| ACCGCTCTCGATGTATTGTT+TGG | + | chr7.3:4006764-4006783 | None:intergenic | 45.0% | |
| ACTAATGGAAGCTGGAGCAT+CGG | + | chr7.3:4004804-4004823 | None:intergenic | 45.0% | |
| CACAGAACAGTGGAAGTGAA+TGG | - | chr7.3:4004620-4004639 | MS.gene072513:CDS | 45.0% | |
| CATATTCTCCATGACCGAGA+GGG | + | chr7.3:4006183-4006202 | None:intergenic | 45.0% | |
| CCAATTCCAATCCATGTGAC+AGG | - | chr7.3:4005810-4005829 | MS.gene072513:intron | 45.0% | |
| CGGAACACTGAGACAAACAT+AGG | + | chr7.3:4004969-4004988 | None:intergenic | 45.0% | |
| GGGTTGTTTGACCCTTAAGT+TGG | - | chr7.3:4006252-4006271 | MS.gene072513:intron | 45.0% | |
| TCATATTCTCCATGACCGAG+AGG | + | chr7.3:4006184-4006203 | None:intergenic | 45.0% | |
| TGTGCCAAATTTGGAGGAAG+TGG | - | chr7.3:4006798-4006817 | MS.gene072513:CDS | 45.0% | |
| TTCCTGAACTCTGGTACTCT+TGG | - | chr7.3:4004705-4004724 | MS.gene072513:CDS | 45.0% | |
| ! | ATGGCCTTGATCAACAGTTC+TGG | + | chr7.3:4005874-4005893 | None:intergenic | 45.0% |
| ! | GGGCATTGTACTTGAAACAC+TGG | + | chr7.3:4005956-4005975 | None:intergenic | 45.0% |
| !! | CCTGTCACATGGATTGGAAT+TGG | + | chr7.3:4005813-4005832 | None:intergenic | 45.0% |
| !! | TTGTAGGTATCGATGGTGGT+AGG | + | chr7.3:4006469-4006488 | None:intergenic | 45.0% |
| !!! | ATTAATTATTTTTAAAATCA+AGG | + | chr7.3:4006347-4006366 | None:intergenic | 5.0% |
| !!! | TTGATTTTAAAAATAATTAA+TGG | - | chr7.3:4006346-4006365 | MS.gene072513:intron | 5.0% |
| AAGCATGTCTGACGGCTTGT+AGG | + | chr7.3:4006485-4006504 | None:intergenic | 50.0% | |
| AATCCATGTGACAGGAACCC+GGG | - | chr7.3:4005818-4005837 | MS.gene072513:intron | 50.0% | |
| ACAGCTCGCATTCCATCAAC+AGG | + | chr7.3:4005019-4005038 | None:intergenic | 50.0% | |
| AGAGGGTTGGAACCTTGGAT+TGG | + | chr7.3:4006166-4006185 | None:intergenic | 50.0% | |
| AGAGTTCAGGAAAGCCGTGA+AGG | + | chr7.3:4004697-4004716 | None:intergenic | 50.0% | |
| AGCAACAGCACAGTAACCGA+GGG | + | chr7.3:4004756-4004775 | None:intergenic | 50.0% | |
| AGTGATGTGTAGGCTCACGA+AGG | + | chr7.3:4006430-4006449 | None:intergenic | 50.0% | |
| ATCCAAGGTTCCAACCCTCT+CGG | - | chr7.3:4006166-4006185 | MS.gene072513:intron | 50.0% | |
| ATGCCTTCTTTGGGCAGGAT+TGG | + | chr7.3:4005922-4005941 | None:intergenic | 50.0% | |
| CAACGATGTCACCCACCAAA+TGG | + | chr7.3:4004841-4004860 | None:intergenic | 50.0% | |
| CAATCCATGTGACAGGAACC+CGG | - | chr7.3:4005817-4005836 | MS.gene072513:intron | 50.0% | |
| CACCCCAATCATGAGCTACA+AGG | + | chr7.3:4004898-4004917 | None:intergenic | 50.0% | |
| CCTGTTGTCCTGTTCCTTCA+CGG | - | chr7.3:4004680-4004699 | MS.gene072513:CDS | 50.0% | |
| GATGGAATGCGAGCTGTGTA+TGG | - | chr7.3:4005022-4005041 | MS.gene072513:intron | 50.0% | |
| TGATTTCCTCGGCAGCTTCT+CGG | + | chr7.3:4006855-4006874 | None:intergenic | 50.0% | |
| TTCACGGCTTTCCTGAACTC+TGG | - | chr7.3:4004696-4004715 | MS.gene072513:CDS | 50.0% | |
| ! | ATTGGGGTGCCATCATTGGT+TGG | - | chr7.3:4004909-4004928 | MS.gene072513:intron | 50.0% |
| ! | CATGATTGGGGTGCCATCAT+TGG | - | chr7.3:4004905-4004924 | MS.gene072513:intron | 50.0% |
| !! | GTTGCTCTCATCGACTCACT+TGG | - | chr7.3:4004857-4004876 | MS.gene072513:intron | 50.0% |
| !! | TGACGGCTTGTAGGTATCGA+TGG | + | chr7.3:4006476-4006495 | None:intergenic | 50.0% |
| AGCCAAGAGCAGCAATCTGG+TGG | + | chr7.3:4004733-4004752 | None:intergenic | 55.0% | |
| ATTGCTGCTCTTGGCTCCCT+CGG | - | chr7.3:4004737-4004756 | MS.gene072513:CDS | 55.0% | |
| CAGGAAAGCCGTGAAGGAAC+AGG | + | chr7.3:4004691-4004710 | None:intergenic | 55.0% | |
| CCACCAATCCTGCCCAAAGA+AGG | - | chr7.3:4005916-4005935 | MS.gene072513:intron | 55.0% | |
| CCGTGAAGGAACAGGACAAC+AGG | + | chr7.3:4004683-4004702 | None:intergenic | 55.0% | |
| CCTTCTTTGGGCAGGATTGG+TGG | + | chr7.3:4005919-4005938 | None:intergenic | 55.0% | |
| CGGGTTCCTGTCACATGGAT+TGG | + | chr7.3:4005819-4005838 | None:intergenic | 55.0% | |
| CTTCTTGCGAGAGCCAGGAA+GGG | + | chr7.3:4005981-4006000 | None:intergenic | 55.0% | |
| GACATCTTCTTGCGAGAGCC+AGG | + | chr7.3:4005986-4006005 | None:intergenic | 55.0% | |
| GAGCAACAGCACAGTAACCG+AGG | + | chr7.3:4004757-4004776 | None:intergenic | 55.0% | |
| GCTCCAGATCTCCGTGGTTA+CGG | - | chr7.3:4004773-4004792 | MS.gene072513:CDS | 55.0% | |
| GTGACAGGAACCCGGGAAAA+TGG | - | chr7.3:4005825-4005844 | MS.gene072513:intron | 55.0% | |
| TCTTCTTGCGAGAGCCAGGA+AGG | + | chr7.3:4005982-4006001 | None:intergenic | 55.0% | |
| TTCTCCATGACCGAGAGGGT+TGG | + | chr7.3:4006179-4006198 | None:intergenic | 55.0% | |
| TTTCCCGGGTTCCTGTCACA+TGG | + | chr7.3:4005824-4005843 | None:intergenic | 55.0% | |
| !! | CGCCAAGAGTACCAGAGTTC+AGG | + | chr7.3:4004710-4004729 | None:intergenic | 55.0% |
| !! | CGGCTTGTAGGTATCGATGG+TGG | + | chr7.3:4006473-4006492 | None:intergenic | 55.0% |
| ATTGGGAGCTCACGGCAGCA+TGG | - | chr7.3:4006665-4006684 | MS.gene072513:CDS | 60.0% | |
| CAACAACCGAGAAGCTGCCG+AGG | - | chr7.3:4006846-4006865 | MS.gene072513:CDS | 60.0% | |
| CGCCACCAGATTGCTGCTCT+TGG | - | chr7.3:4004728-4004747 | MS.gene072513:CDS | 60.0% | |
| GACCGAGAGGGTTGGAACCT+TGG | + | chr7.3:4006171-4006190 | None:intergenic | 60.0% | |
| GCTGTTGCTCCAGATCTCCG+TGG | - | chr7.3:4004767-4004786 | MS.gene072513:CDS | 60.0% | |
| GGGAGCCAAGAGCAGCAATC+TGG | + | chr7.3:4004736-4004755 | None:intergenic | 60.0% | |
| GGTTCCAACCCTCTCGGTCA+TGG | - | chr7.3:4006172-4006191 | MS.gene072513:intron | 60.0% | |
| GTACAATGCCCCTCCCTTCC+TGG | - | chr7.3:4005965-4005984 | MS.gene072513:intron | 60.0% | |
| TCGCCGTAACCACGGAGATC+TGG | + | chr7.3:4004779-4004798 | None:intergenic | 60.0% | |
| TTGCGAGAGCCAGGAAGGGA+GGG | + | chr7.3:4005977-4005996 | None:intergenic | 60.0% | |
| !! | CATCGGTGTCGCCGTAACCA+CGG | + | chr7.3:4004787-4004806 | None:intergenic | 60.0% |
| CTTGCGAGAGCCAGGAAGGG+AGG | + | chr7.3:4005978-4005997 | None:intergenic | 65.0% | |
| GAGCTCACGGCAGCATGGAC+CGG | - | chr7.3:4006670-4006689 | MS.gene072513:CDS | 65.0% | |
| TGCGAGAGCCAGGAAGGGAG+GGG | + | chr7.3:4005976-4005995 | None:intergenic | 65.0% | |
| ! | TTGGGCAGGATTGGTGGCCC+AGG | + | chr7.3:4005913-4005932 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 4004605 | 4006909 | 4004605 | ID=MS.gene072513 |
| chr7.3 | mRNA | 4004605 | 4006909 | 4004605 | ID=MS.gene072513.t1;Parent=MS.gene072513 |
| chr7.3 | exon | 4006442 | 4006909 | 4006442 | ID=MS.gene072513.t1.exon1;Parent=MS.gene072513.t1 |
| chr7.3 | CDS | 4006442 | 4006909 | 4006442 | ID=cds.MS.gene072513.t1;Parent=MS.gene072513.t1 |
| chr7.3 | exon | 4005438 | 4005682 | 4005438 | ID=MS.gene072513.t1.exon2;Parent=MS.gene072513.t1 |
| chr7.3 | CDS | 4005438 | 4005682 | 4005438 | ID=cds.MS.gene072513.t1;Parent=MS.gene072513.t1 |
| chr7.3 | exon | 4004605 | 4004851 | 4004605 | ID=MS.gene072513.t1.exon3;Parent=MS.gene072513.t1 |
| chr7.3 | CDS | 4004605 | 4004851 | 4004605 | ID=cds.MS.gene072513.t1;Parent=MS.gene072513.t1 |
| Gene Sequence |
| Protein sequence |
