Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073062.t1 | XP_003603595.1 | 95.7 | 713 | 25 | 3 | 1 | 708 | 1 | 712 | 0.00E+00 | 1155.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073062.t1 | Q93YU8 | 30.9 | 787 | 434 | 16 | 1 | 686 | 1 | 778 | 1.6e-41 | 172.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073062.t1 | G7J2X7 | 95.7 | 713 | 25 | 3 | 1 | 708 | 1 | 712 | 0.0e+00 | 1155.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049298 | MS.gene073062 | 0.80997 | 1.45E-50 | -1.69E-46 |
| MS.gene050667 | MS.gene073062 | 0.811733 | 6.04E-51 | -1.69E-46 |
| MS.gene050874 | MS.gene073062 | 0.807723 | 4.40E-50 | -1.69E-46 |
| MS.gene050875 | MS.gene073062 | 0.834353 | 3.15E-56 | -1.69E-46 |
| MS.gene051025 | MS.gene073062 | 0.84876 | 4.99E-60 | -1.69E-46 |
| MS.gene051914 | MS.gene073062 | 0.873422 | 1.49E-67 | -1.69E-46 |
| MS.gene052143 | MS.gene073062 | 0.804563 | 2.03E-49 | -1.69E-46 |
| MS.gene052169 | MS.gene073062 | 0.845726 | 3.39E-59 | -1.69E-46 |
| MS.gene052209 | MS.gene073062 | 0.819169 | 1.34E-52 | -1.69E-46 |
| MS.gene052308 | MS.gene073062 | 0.84603 | 2.80E-59 | -1.69E-46 |
| MS.gene052367 | MS.gene073062 | 0.82445 | 8.02E-54 | -1.69E-46 |
| MS.gene053108 | MS.gene073062 | 0.815922 | 7.21E-52 | -1.69E-46 |
| MS.gene053173 | MS.gene073062 | 0.869772 | 2.41E-66 | -1.69E-46 |
| MS.gene053281 | MS.gene073062 | 0.806084 | 9.77E-50 | -1.69E-46 |
| MS.gene053348 | MS.gene073062 | 0.825645 | 4.19E-54 | -1.69E-46 |
| MS.gene054018 | MS.gene073062 | 0.808882 | 2.49E-50 | -1.69E-46 |
| MS.gene054459 | MS.gene073062 | 0.842781 | 2.10E-58 | -1.69E-46 |
| MS.gene054551 | MS.gene073062 | 0.858301 | 9.05E-63 | -1.69E-46 |
| MS.gene054593 | MS.gene073062 | 0.829155 | 6.03E-55 | -1.69E-46 |
| MS.gene054633 | MS.gene073062 | 0.845612 | 3.64E-59 | -1.69E-46 |
| MS.gene054662 | MS.gene073062 | 0.903797 | 2.39E-79 | -1.69E-46 |
| MS.gene054851 | MS.gene073062 | 0.810762 | 9.81E-51 | -1.69E-46 |
| MS.gene054885 | MS.gene073062 | 0.800381 | 1.48E-48 | -1.69E-46 |
| MS.gene054941 | MS.gene073062 | 0.815993 | 6.95E-52 | -1.69E-46 |
| MS.gene055308 | MS.gene073062 | 0.830793 | 2.40E-55 | -1.69E-46 |
| MS.gene055578 | MS.gene073062 | 0.827596 | 1.43E-54 | -1.69E-46 |
| MS.gene055616 | MS.gene073062 | 0.802067 | 6.69E-49 | -1.69E-46 |
| MS.gene055982 | MS.gene073062 | 0.801416 | 9.10E-49 | -1.69E-46 |
| MS.gene056041 | MS.gene073062 | 0.818426 | 1.97E-52 | -1.69E-46 |
| MS.gene05640 | MS.gene073062 | 0.866841 | 2.12E-65 | -1.69E-46 |
| MS.gene05652 | MS.gene073062 | 0.858117 | 1.03E-62 | -1.69E-46 |
| MS.gene056583 | MS.gene073062 | 0.807206 | 5.66E-50 | -1.69E-46 |
| MS.gene056618 | MS.gene073062 | 0.824511 | 7.76E-54 | -1.69E-46 |
| MS.gene057101 | MS.gene073062 | 0.820056 | 8.39E-53 | -1.69E-46 |
| MS.gene05732 | MS.gene073062 | 0.816016 | 6.87E-52 | -1.69E-46 |
| MS.gene057367 | MS.gene073062 | 0.8897 | 1.92E-73 | -1.69E-46 |
| MS.gene057458 | MS.gene073062 | 0.824498 | 7.81E-54 | -1.69E-46 |
| MS.gene057669 | MS.gene073062 | 0.849519 | 3.07E-60 | -1.69E-46 |
| MS.gene058128 | MS.gene073062 | 0.847795 | 9.23E-60 | -1.69E-46 |
| MS.gene058849 | MS.gene073062 | 0.801935 | 7.12E-49 | -1.69E-46 |
| MS.gene058853 | MS.gene073062 | 0.845015 | 5.29E-59 | -1.69E-46 |
| MS.gene059553 | MS.gene073062 | 0.837893 | 3.97E-57 | -1.69E-46 |
| MS.gene05960 | MS.gene073062 | 0.808654 | 2.79E-50 | -1.69E-46 |
| MS.gene059616 | MS.gene073062 | 0.820009 | 8.60E-53 | -1.69E-46 |
| MS.gene060275 | MS.gene073062 | 0.824188 | 9.24E-54 | -1.69E-46 |
| MS.gene060291 | MS.gene073062 | 0.85309 | 3.01E-61 | -1.69E-46 |
| MS.gene06080 | MS.gene073062 | 0.806407 | 8.35E-50 | -1.69E-46 |
| MS.gene06093 | MS.gene073062 | 0.910728 | 1.35E-82 | -1.69E-46 |
| MS.gene061260 | MS.gene073062 | 0.825546 | 4.42E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073062.t1 | MTR_3g109450 | 97.195 | 713 | 14 | 3 | 1 | 708 | 1 | 712 | 0.0 | 1423 |
| MS.gene073062.t1 | MTR_2g102050 | 54.513 | 565 | 226 | 5 | 167 | 708 | 204 | 760 | 0.0 | 585 |
| MS.gene073062.t1 | MTR_4g012430 | 54.726 | 402 | 170 | 4 | 265 | 661 | 117 | 511 | 2.67e-145 | 434 |
| MS.gene073062.t1 | MTR_4g012430 | 64.407 | 59 | 21 | 0 | 1 | 59 | 1 | 59 | 2.12e-13 | 73.6 |
| MS.gene073062.t1 | MTR_8g006850 | 28.634 | 454 | 289 | 9 | 273 | 702 | 279 | 721 | 1.32e-53 | 197 |
| MS.gene073062.t1 | MTR_8g006850 | 55.932 | 59 | 26 | 0 | 1 | 59 | 1 | 59 | 3.89e-14 | 76.6 |
| MS.gene073062.t1 | MTR_5g022530 | 28.903 | 474 | 290 | 9 | 247 | 696 | 181 | 631 | 1.49e-52 | 193 |
| MS.gene073062.t1 | MTR_7g081705 | 28.728 | 456 | 290 | 6 | 267 | 702 | 401 | 841 | 6.12e-52 | 194 |
| MS.gene073062.t1 | MTR_7g081705 | 57.627 | 59 | 25 | 0 | 1 | 59 | 1 | 59 | 2.16e-14 | 77.4 |
| MS.gene073062.t1 | MTR_2g048360 | 29.247 | 465 | 300 | 9 | 251 | 698 | 179 | 631 | 6.24e-46 | 174 |
| MS.gene073062.t1 | MTR_4g127620 | 26.183 | 676 | 396 | 20 | 1 | 587 | 1 | 662 | 7.14e-46 | 175 |
| MS.gene073062.t1 | MTR_1g112850 | 26.755 | 527 | 331 | 12 | 211 | 707 | 236 | 737 | 5.52e-45 | 172 |
| MS.gene073062.t1 | MTR_8g091250 | 26.418 | 670 | 368 | 22 | 1 | 592 | 1 | 623 | 6.07e-42 | 163 |
| MS.gene073062.t1 | MTR_3g078830 | 25.036 | 703 | 388 | 25 | 1 | 586 | 1 | 681 | 1.78e-40 | 159 |
| MS.gene073062.t1 | MTR_3g088190 | 24.009 | 454 | 307 | 7 | 273 | 697 | 456 | 900 | 5.70e-33 | 136 |
| MS.gene073062.t1 | MTR_5g087740 | 27.184 | 412 | 218 | 11 | 271 | 630 | 308 | 689 | 1.48e-30 | 129 |
| MS.gene073062.t1 | MTR_5g098980 | 25.060 | 419 | 276 | 7 | 284 | 693 | 367 | 756 | 3.01e-30 | 127 |
| MS.gene073062.t1 | MTR_3g115120 | 23.007 | 439 | 287 | 10 | 270 | 696 | 280 | 679 | 4.85e-26 | 114 |
| MS.gene073062.t1 | MTR_2g036920 | 28.269 | 283 | 161 | 7 | 271 | 521 | 503 | 775 | 7.11e-25 | 111 |
| MS.gene073062.t1 | MTR_2g036920 | 44.048 | 84 | 40 | 3 | 1 | 78 | 1 | 83 | 1.69e-12 | 71.6 |
| MS.gene073062.t1 | MTR_2g036920 | 26.437 | 348 | 211 | 9 | 271 | 584 | 474 | 810 | 7.79e-25 | 110 |
| MS.gene073062.t1 | MTR_2g036920 | 44.048 | 84 | 40 | 3 | 1 | 78 | 1 | 83 | 1.43e-12 | 71.6 |
| MS.gene073062.t1 | MTR_3g096950 | 24.217 | 351 | 250 | 5 | 354 | 697 | 434 | 775 | 5.53e-21 | 98.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073062.t1 | AT5G25590 | 57.106 | 774 | 262 | 16 | 1 | 707 | 1 | 771 | 0.0 | 729 |
| MS.gene073062.t1 | AT1G52320 | 62.585 | 441 | 163 | 1 | 258 | 696 | 313 | 753 | 0.0 | 568 |
| MS.gene073062.t1 | AT1G52320 | 62.585 | 441 | 163 | 1 | 258 | 696 | 336 | 776 | 0.0 | 568 |
| MS.gene073062.t1 | AT1G52320 | 62.585 | 441 | 163 | 1 | 258 | 696 | 336 | 776 | 0.0 | 568 |
| MS.gene073062.t1 | AT1G52320 | 62.670 | 442 | 161 | 3 | 258 | 696 | 10 | 450 | 0.0 | 566 |
| MS.gene073062.t1 | AT1G52320 | 62.670 | 442 | 161 | 3 | 258 | 696 | 10 | 450 | 0.0 | 566 |
| MS.gene073062.t1 | AT1G02110 | 28.964 | 473 | 294 | 7 | 252 | 702 | 249 | 701 | 4.41e-57 | 206 |
| MS.gene073062.t1 | AT1G02110 | 52.542 | 59 | 28 | 0 | 1 | 59 | 1 | 59 | 5.40e-13 | 72.8 |
| MS.gene073062.t1 | AT3G51290 | 29.730 | 444 | 284 | 5 | 273 | 704 | 202 | 629 | 9.67e-55 | 199 |
| MS.gene073062.t1 | AT3G51290 | 29.730 | 444 | 284 | 5 | 273 | 704 | 202 | 629 | 1.49e-54 | 201 |
| MS.gene073062.t1 | AT3G51290 | 29.279 | 444 | 280 | 6 | 273 | 704 | 202 | 623 | 3.05e-50 | 186 |
| MS.gene073062.t1 | AT3G60320 | 29.128 | 436 | 285 | 9 | 267 | 686 | 351 | 778 | 9.52e-47 | 178 |
| MS.gene073062.t1 | AT3G60320 | 46.847 | 111 | 55 | 2 | 1 | 111 | 1 | 107 | 7.78e-16 | 82.0 |
| MS.gene073062.t1 | AT2G27090 | 25.215 | 698 | 402 | 20 | 1 | 601 | 1 | 675 | 2.42e-46 | 176 |
| MS.gene073062.t1 | AT2G27090 | 25.215 | 698 | 402 | 20 | 1 | 601 | 1 | 675 | 2.42e-46 | 176 |
| MS.gene073062.t1 | AT4G39790 | 26.783 | 631 | 362 | 20 | 1 | 574 | 9 | 596 | 2.44e-42 | 164 |
| MS.gene073062.t1 | AT2G34670 | 28.539 | 445 | 278 | 10 | 272 | 696 | 250 | 674 | 3.37e-39 | 154 |
| MS.gene073062.t1 | AT4G30130 | 25.150 | 668 | 392 | 21 | 1 | 587 | 1 | 641 | 1.15e-34 | 141 |
| MS.gene073062.t1 | AT4G30130 | 25.150 | 668 | 392 | 21 | 1 | 587 | 1 | 641 | 1.15e-34 | 141 |
| MS.gene073062.t1 | AT1G21740 | 24.038 | 520 | 342 | 10 | 211 | 697 | 443 | 942 | 1.50e-32 | 135 |
| MS.gene073062.t1 | AT1G77500 | 25.670 | 448 | 294 | 8 | 273 | 703 | 451 | 876 | 1.98e-31 | 132 |
| MS.gene073062.t1 | AT4G35240 | 26.364 | 330 | 216 | 6 | 275 | 590 | 423 | 739 | 2.10e-27 | 119 |
| MS.gene073062.t1 | AT4G35240 | 26.364 | 330 | 216 | 6 | 275 | 590 | 423 | 739 | 2.10e-27 | 119 |
| MS.gene073062.t1 | AT4G35240 | 26.364 | 330 | 216 | 6 | 275 | 590 | 423 | 739 | 2.20e-27 | 119 |
| MS.gene073062.t1 | AT4G35240 | 26.364 | 330 | 216 | 6 | 275 | 590 | 423 | 739 | 2.20e-27 | 119 |
| MS.gene073062.t1 | AT1G20530 | 23.304 | 575 | 359 | 18 | 1 | 559 | 1 | 509 | 8.80e-27 | 116 |
| MS.gene073062.t1 | AT2G34670 | 26.974 | 456 | 256 | 16 | 158 | 568 | 121 | 544 | 1.04e-24 | 109 |
| MS.gene073062.t1 | AT2G19090 | 26.571 | 350 | 214 | 6 | 271 | 587 | 385 | 724 | 3.71e-24 | 108 |
| MS.gene073062.t1 | AT2G17110 | 25.079 | 315 | 224 | 3 | 275 | 577 | 313 | 627 | 1.39e-23 | 106 |
| MS.gene073062.t1 | AT5G54480 | 23.358 | 411 | 268 | 12 | 293 | 696 | 345 | 715 | 3.39e-17 | 86.3 |
| MS.gene073062.t1 | AT4G30130 | 36.508 | 126 | 77 | 1 | 352 | 477 | 398 | 520 | 1.16e-14 | 77.8 |
| MS.gene073062.t1 | AT4G30130 | 36.508 | 126 | 77 | 1 | 352 | 477 | 398 | 520 | 1.16e-14 | 77.8 |
Find 165 sgRNAs with CRISPR-Local
Find 233 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTATGGATATGGATAATA+TGG | 0.114095 | 3.3:+89987888 | MS.gene073062:CDS |
| GGGCTTGGATTGGTGGATTT+TGG | 0.116448 | 3.3:-89989972 | None:intergenic |
| GGCTTGGGATTATTTCTTTA+TGG | 0.126467 | 3.3:+89987873 | MS.gene073062:CDS |
| AAACTTGTTGCTCTTGTTAT+TGG | 0.151747 | 3.3:+89989102 | MS.gene073062:CDS |
| GCGCCATCTTCTCCTTCTTC+TGG | 0.159074 | 3.3:+89987805 | MS.gene073062:CDS |
| GGATTATTTCTTTATGGATA+TGG | 0.176860 | 3.3:+89987879 | MS.gene073062:CDS |
| CAAATTGTGACTCCCATTCT+TGG | 0.206075 | 3.3:-89989834 | None:intergenic |
| GCCTTCGCCGCCGGTCATTC+AGG | 0.243027 | 3.3:+89987454 | MS.gene073062:CDS |
| ATAACAAGAGCAACAAGTTT+TGG | 0.264787 | 3.3:-89989099 | None:intergenic |
| AGAAACACATGCCACTGTTT+TGG | 0.288622 | 3.3:+89988635 | MS.gene073062:CDS |
| GGTGAGAATGTTGATGTTAA+TGG | 0.289655 | 3.3:+89987967 | MS.gene073062:CDS |
| CCCTTCGTTGTAAATGCTTC+TGG | 0.304621 | 3.3:-89990182 | None:intergenic |
| CTCAACTTTCTCCGGTGTCT+TGG | 0.318035 | 3.3:-89988016 | None:intergenic |
| TTCTAATTTCGCTGATGGTC+GGG | 0.320744 | 3.3:+89988275 | MS.gene073062:CDS |
| ACAACTGAGAATCGCGAATA+TGG | 0.320972 | 3.3:-89989074 | None:intergenic |
| TCCAAAGGCGGTGGAGGTTT+AGG | 0.322625 | 3.3:-89987583 | None:intergenic |
| CGCCATCTTCTCCTTCTTCT+GGG | 0.323153 | 3.3:+89987806 | MS.gene073062:CDS |
| AACTTGTTGCTCTTGTTATT+GGG | 0.330220 | 3.3:+89989103 | MS.gene073062:CDS |
| GGAGGAAGAGATGAAGTTAA+AGG | 0.341872 | 3.3:+89990098 | MS.gene073062:CDS |
| TGAGGTTGATGTGTATAATA+AGG | 0.342260 | 3.3:+89988035 | MS.gene073062:CDS |
| TCCTAAACCTCCACCGCCTT+TGG | 0.343046 | 3.3:+89987582 | MS.gene073062:CDS |
| ATAATCCCAAGCCATGTTCT+TGG | 0.359746 | 3.3:-89987863 | None:intergenic |
| TGAGTTTAGAAGAGCAATTA+AGG | 0.371298 | 3.3:+89988134 | MS.gene073062:CDS |
| AGAGAAGCCGGTGAGAAATT+AGG | 0.374879 | 3.3:-89987637 | None:intergenic |
| TCAACTTTCTCCGGTGTCTT+GGG | 0.378191 | 3.3:-89988015 | None:intergenic |
| GGCGGAAGAGGCGGTGGAGG+AGG | 0.380266 | 3.3:-89987616 | None:intergenic |
| GAACATATTCTCCCACATAT+TGG | 0.386881 | 3.3:-89989692 | None:intergenic |
| GATGCCGCCACCGCCTTTGC+CGG | 0.392756 | 3.3:+89987837 | MS.gene073062:CDS |
| GCAGATTTCGCTAGCTCGTC+AGG | 0.404088 | 3.3:-89990030 | None:intergenic |
| ACGACCGCACCGTGCAGCTT+TGG | 0.406384 | 3.3:+89989803 | MS.gene073062:CDS |
| TGATATTTCTCAAGATCATA+AGG | 0.409383 | 3.3:+89989762 | MS.gene073062:CDS |
| GAAGAGGCGGTGGAGGAGGG+AGG | 0.409543 | 3.3:-89987612 | None:intergenic |
| GCTCGTAATGCCTTCGCCGC+CGG | 0.417087 | 3.3:+89987445 | MS.gene073062:CDS |
| GAGAAATATCAAGAGATTTG+AGG | 0.419497 | 3.3:-89989750 | None:intergenic |
| GAGAACTAAGAATCTGCATA+AGG | 0.420407 | 3.3:-89988173 | None:intergenic |
| TGAGCTCTTCCGCGCGCTAT+CGG | 0.425047 | 3.3:+89990374 | MS.gene073062:CDS |
| CTAAGATGCTTGAAGCTACT+AGG | 0.436626 | 3.3:+89988241 | MS.gene073062:CDS |
| ATCATCTCTTTCTAGATCAT+CGG | 0.445892 | 3.3:-89990208 | None:intergenic |
| CAAGCCATGTTCTTGGAATC+CGG | 0.447999 | 3.3:-89987856 | None:intergenic |
| GGTACCATTCTTCAAAAGCT+TGG | 0.451334 | 3.3:-89990161 | None:intergenic |
| TTGTTGAAGAGGTGGAAGAA+GGG | 0.456126 | 3.3:+89987743 | MS.gene073062:CDS |
| ATTCTAATTTCGCTGATGGT+CGG | 0.456595 | 3.3:+89988274 | MS.gene073062:CDS |
| CTTTCAGGATGGCCAATATG+TGG | 0.463738 | 3.3:+89989680 | MS.gene073062:intron |
| GATAGCGCGCGGAAGAGCTC+AGG | 0.466453 | 3.3:-89990372 | None:intergenic |
| ACAAACTGCTTCTCCGAGAT+CGG | 0.469741 | 3.3:-89990246 | None:intergenic |
| AAGATCGGCGGTGGAATTAG+TGG | 0.472783 | 3.3:+89987709 | MS.gene073062:CDS |
| TCATCTCTTTCTAGATCATC+GGG | 0.475608 | 3.3:-89990207 | None:intergenic |
| CGGATTCCAAGAACATGGCT+TGG | 0.478452 | 3.3:+89987857 | MS.gene073062:CDS |
| TATCATTCTAATTTCGCTGA+TGG | 0.478716 | 3.3:+89988270 | MS.gene073062:CDS |
| CATTCAAGGGTGTATCCAAT+GGG | 0.479178 | 3.3:+89988577 | MS.gene073062:CDS |
| ACATCCAAGCTCTTTATAGC+TGG | 0.481961 | 3.3:+89989884 | MS.gene073062:CDS |
| TTGGAATCCGGCAAAGGCGG+TGG | 0.482836 | 3.3:-89987844 | None:intergenic |
| TAAAGAAGGGCTTGGATTGG+TGG | 0.484719 | 3.3:-89989979 | None:intergenic |
| GGATTCCAAGAACATGGCTT+GGG | 0.486447 | 3.3:+89987858 | MS.gene073062:CDS |
| GAAATGTGAGGAAACTAGAA+AGG | 0.486729 | 3.3:+89990122 | MS.gene073062:CDS |
| ATTGTTGAAGAGGTGGAAGA+AGG | 0.490175 | 3.3:+89987742 | MS.gene073062:CDS |
| GATGAGATTGAGAATGAAGA+AGG | 0.491897 | 3.3:+89987934 | MS.gene073062:CDS |
| ATTGCCCACGCTCAAGGTGG+TGG | 0.492952 | 3.3:+89990441 | MS.gene073062:CDS |
| TTTGGAATGTAATCCAAGAA+TGG | 0.494175 | 3.3:+89989821 | MS.gene073062:CDS |
| TTAGGCGGAAGAGGCGGTGG+AGG | 0.494227 | 3.3:-89987619 | None:intergenic |
| GAATCCGGCAAAGGCGGTGG+CGG | 0.494775 | 3.3:-89987841 | None:intergenic |
| ATTGCTCTTCTAAACTCAGC+AGG | 0.495940 | 3.3:-89988129 | None:intergenic |
| GGCGCCAGTGTTGAATCATT+AGG | 0.496446 | 3.3:+89988967 | MS.gene073062:CDS |
| TTGGAATGTAATCCAAGAAT+GGG | 0.497192 | 3.3:+89989822 | MS.gene073062:CDS |
| CAGTTACAGCACCGCAAGAT+CGG | 0.497409 | 3.3:+89987694 | MS.gene073062:CDS |
| GGGAAGAGGTTCTTTGAATG+AGG | 0.498151 | 3.3:+89987909 | MS.gene073062:CDS |
| TCTAATTTCGCTGATGGTCG+GGG | 0.499933 | 3.3:+89988276 | MS.gene073062:CDS |
| AGAACTAAGAATCTGCATAA+GGG | 0.500689 | 3.3:-89988172 | None:intergenic |
| ACCTGAATGACCGGCGGCGA+AGG | 0.502395 | 3.3:-89987455 | None:intergenic |
| AAATTAGGCGGAAGAGGCGG+TGG | 0.507309 | 3.3:-89987622 | None:intergenic |
| GATTCTTCCAAAGGCGGTGG+AGG | 0.508145 | 3.3:-89987589 | None:intergenic |
| TGCAAGTGATAACATGGAAT+CGG | 0.508476 | 3.3:+89988553 | MS.gene073062:CDS |
| GCGGAAGAGGCGGTGGAGGA+GGG | 0.508892 | 3.3:-89987615 | None:intergenic |
| TTTATGGATATGGATAATAT+GGG | 0.509779 | 3.3:+89987889 | MS.gene073062:CDS |
| AATCATGCCATGCATAAAGA+AGG | 0.514400 | 3.3:-89989993 | None:intergenic |
| TCTTGTGTGTAAATGACTTA+CGG | 0.517302 | 3.3:-89989004 | None:intergenic |
| AAAGACGATCATACTTCAGC+AGG | 0.518195 | 3.3:+89990077 | MS.gene073062:CDS |
| CAGCACCGCAAGATCGGCGG+TGG | 0.518911 | 3.3:+89987700 | MS.gene073062:CDS |
| CGGTCATTCAGGTTATGCTA+TGG | 0.522813 | 3.3:+89987465 | MS.gene073062:CDS |
| GGTGAGAAATTAGGCGGAAG+AGG | 0.523496 | 3.3:-89987628 | None:intergenic |
| TGAGCCAGCTATAAAGAGCT+TGG | 0.525015 | 3.3:-89989888 | None:intergenic |
| GAAGGAGAAGATGGCGCGTG+AGG | 0.530503 | 3.3:-89987799 | None:intergenic |
| ACATCAACCTCAACTTTCTC+CGG | 0.530753 | 3.3:-89988024 | None:intergenic |
| TCATTCAAGGGTGTATCCAA+TGG | 0.533090 | 3.3:+89988576 | MS.gene073062:CDS |
| TCCAAGCCCTTCTTTATGCA+TGG | 0.533581 | 3.3:+89989986 | MS.gene073062:CDS |
| CTCCCAGAAGAAGGAGAAGA+TGG | 0.534623 | 3.3:-89987808 | None:intergenic |
| AAGTCGATTGCCCACGCTCA+AGG | 0.535916 | 3.3:+89990435 | MS.gene073062:CDS |
| AACATGGAATCGGTCATTCA+AGG | 0.539680 | 3.3:+89988563 | MS.gene073062:CDS |
| GGTGTATCCAATGGGGAGGG+TGG | 0.541152 | 3.3:+89988585 | MS.gene073062:CDS |
| GCCATGCATAAAGAAGGGCT+TGG | 0.543280 | 3.3:-89989987 | None:intergenic |
| CTTTATCACTGCAGAAAATG+AGG | 0.543457 | 3.3:-89990058 | None:intergenic |
| ATCACTTTACTCCCAGAAGA+AGG | 0.544452 | 3.3:-89987817 | None:intergenic |
| GATATGGATAATATGGGAAG+AGG | 0.547615 | 3.3:+89987895 | MS.gene073062:CDS |
| GGCGGTGGAATTAGTGGTGG+AGG | 0.549912 | 3.3:+89987715 | MS.gene073062:CDS |
| CCAGAAGCATTTACAACGAA+GGG | 0.551600 | 3.3:+89990182 | MS.gene073062:CDS |
| ACAGAGCGTTTGAGAGAAGC+CGG | 0.551771 | 3.3:-89987649 | None:intergenic |
| GGATCAGAATGAAGAGGCGG+TGG | 0.555414 | 3.3:-89987562 | None:intergenic |
| TTTGGACAAGTTGTTAGCAT+GGG | 0.555933 | 3.3:+89988653 | MS.gene073062:CDS |
| GCATAAAGAAGGGCTTGGAT+TGG | 0.556125 | 3.3:-89989982 | None:intergenic |
| AAGAGGCGGTGGAGGAGGGA+GGG | 0.557539 | 3.3:-89987611 | None:intergenic |
| TAATTCCACCGCCGATCTTG+CGG | 0.558644 | 3.3:-89987705 | None:intergenic |
| CATAGCATAACCTGAATGAC+CGG | 0.563400 | 3.3:-89987464 | None:intergenic |
| TGCTGTAACTGCAACGACAC+AGG | 0.563887 | 3.3:-89987682 | None:intergenic |
| AAATACAAACAATCCGATCT+CGG | 0.564703 | 3.3:+89990233 | MS.gene073062:CDS |
| ACATGGAATCGGTCATTCAA+GGG | 0.566506 | 3.3:+89988564 | MS.gene073062:CDS |
| TTCTTGGAATCCGGCAAAGG+CGG | 0.566851 | 3.3:-89987847 | None:intergenic |
| AGGGATTCTTCCAAAGGCGG+TGG | 0.573076 | 3.3:-89987592 | None:intergenic |
| AGTTTCGCCGTGAGCGTAGT+CGG | 0.573795 | 3.3:-89987515 | None:intergenic |
| TTTCAGGATGGCCAATATGT+GGG | 0.579247 | 3.3:+89989681 | MS.gene073062:intron |
| AATGAAGAAGGTGAAATTGA+AGG | 0.580423 | 3.3:+89987946 | MS.gene073062:CDS |
| TATTGTTGATATGCAGTCGA+TGG | 0.581443 | 3.3:+89989029 | MS.gene073062:CDS |
| GAAGAGGTGGAAGAAGGGAA+AGG | 0.581945 | 3.3:+89987748 | MS.gene073062:CDS |
| GGGAAAGGCGGTGATGCTGA+TGG | 0.584993 | 3.3:+89987763 | MS.gene073062:CDS |
| TGGAGGTGACATTGTTGAAG+AGG | 0.585814 | 3.3:+89987732 | MS.gene073062:CDS |
| GAAACTCTATGAAGAAGTCA+AGG | 0.586792 | 3.3:+89988680 | MS.gene073062:CDS |
| CGCACCACCACCTTGAGCGT+GGG | 0.587071 | 3.3:-89990445 | None:intergenic |
| GAGGTGGAAGAAGGGAAAGG+CGG | 0.588013 | 3.3:+89987751 | MS.gene073062:CDS |
| CCGCACCACCACCTTGAGCG+TGG | 0.589202 | 3.3:-89990446 | None:intergenic |
| GTAGTCGGAGAGAGCGGCGC+CGG | 0.592343 | 3.3:-89987500 | None:intergenic |
| GAGTCATGCAAGTGATAACA+TGG | 0.593246 | 3.3:+89988547 | MS.gene073062:CDS |
| CAGAAGCATTTACAACGAAG+GGG | 0.593582 | 3.3:+89990183 | MS.gene073062:CDS |
| AGGTGACATTGTTGAAGAGG+TGG | 0.593877 | 3.3:+89987735 | MS.gene073062:CDS |
| GGTGCGGTCGTAATGATGCT+TGG | 0.594455 | 3.3:-89989791 | None:intergenic |
| GGACTCAACAGTTTCTGAAG+TGG | 0.596338 | 3.3:+89989050 | MS.gene073062:CDS |
| CCACGCTCAAGGTGGTGGTG+CGG | 0.602808 | 3.3:+89990446 | MS.gene073062:CDS |
| ATGTTCTTGGAATCCGGCAA+AGG | 0.605757 | 3.3:-89987850 | None:intergenic |
| TCTTCCGCCTAATTTCTCAC+CGG | 0.608905 | 3.3:+89987630 | MS.gene073062:CDS |
| ATCATGCCATGCATAAAGAA+GGG | 0.611365 | 3.3:-89989992 | None:intergenic |
| GAAGTTAAAGGAGAAATGTG+AGG | 0.611782 | 3.3:+89990110 | MS.gene073062:CDS |
| AAACTAGAAAGGAATTCTTG+AGG | 0.618185 | 3.3:+89990133 | MS.gene073062:CDS |
| GGAGGGAGGGATTCTTCCAA+AGG | 0.620699 | 3.3:-89987598 | None:intergenic |
| CAAGGGTGTATCCAATGGGG+AGG | 0.622313 | 3.3:+89988581 | MS.gene073062:CDS |
| GCTCTCTCCGACTACGCTCA+CGG | 0.622545 | 3.3:+89987508 | MS.gene073062:CDS |
| ATCTGCATAAGGGTAACAGA+AGG | 0.622988 | 3.3:-89988162 | None:intergenic |
| ACCAGAAGCATTTACAACGA+AGG | 0.625698 | 3.3:+89990181 | MS.gene073062:CDS |
| CTGAACAAGCAGAAGAAGCG+TGG | 0.626103 | 3.3:+89988946 | MS.gene073062:CDS |
| TTTGCCGGATTCCAAGAACA+TGG | 0.627689 | 3.3:+89987852 | MS.gene073062:CDS |
| GACGATCATACTTCAGCAGG+AGG | 0.629306 | 3.3:+89990080 | MS.gene073062:CDS |
| ATCGGCGGTGGAATTAGTGG+TGG | 0.630858 | 3.3:+89987712 | MS.gene073062:CDS |
| TGAGATTGAACCCAAGACAC+CGG | 0.633573 | 3.3:+89988005 | MS.gene073062:CDS |
| GGAGCATGAACATGTACATG+AGG | 0.635866 | 3.3:+89988056 | MS.gene073062:CDS |
| GATTACATTCCAAAGCTGCA+CGG | 0.636378 | 3.3:-89989812 | None:intergenic |
| CAAGACACCGGAGAAAGTTG+AGG | 0.641109 | 3.3:+89988017 | MS.gene073062:CDS |
| TGAGGATGATGTGATAAGAG+AGG | 0.648109 | 3.3:+89988074 | MS.gene073062:CDS |
| GGCGGCGAAGGCATTACGAG+CGG | 0.649430 | 3.3:-89987443 | None:intergenic |
| GTGAGCGTAGTCGGAGAGAG+CGG | 0.649810 | 3.3:-89987506 | None:intergenic |
| GAGAAATTAGGCGGAAGAGG+CGG | 0.650849 | 3.3:-89987625 | None:intergenic |
| GGTTTAGGATCAGAATGAAG+AGG | 0.652248 | 3.3:-89987568 | None:intergenic |
| TTACAGCACCGCAAGATCGG+CGG | 0.652795 | 3.3:+89987697 | MS.gene073062:CDS |
| GAGAATGTTGATGTTAATGG+AGG | 0.660500 | 3.3:+89987970 | MS.gene073062:CDS |
| TGATGTTAATGGAGGACATG+TGG | 0.660982 | 3.3:+89987978 | MS.gene073062:CDS |
| AAGGGTGTATCCAATGGGGA+GGG | 0.663838 | 3.3:+89988582 | MS.gene073062:CDS |
| TGTTAATGGAGGACATGTGG+AGG | 0.675457 | 3.3:+89987981 | MS.gene073062:CDS |
| CATTCCAAAGCTGCACGGTG+CGG | 0.678361 | 3.3:-89989807 | None:intergenic |
| GAAGCCGGTGAGAAATTAGG+CGG | 0.684519 | 3.3:-89987634 | None:intergenic |
| GGGAGGGATTCTTCCAAAGG+CGG | 0.689716 | 3.3:-89987595 | None:intergenic |
| GTTTAGAAGAGCAATTAAGG+TGG | 0.690000 | 3.3:+89988137 | MS.gene073062:CDS |
| GAGTATAATCCGATAGCGCG+CGG | 0.690717 | 3.3:-89990383 | None:intergenic |
| TGTAACTGCAACGACACAGG+CGG | 0.699824 | 3.3:-89987679 | None:intergenic |
| AGAAGCATTTACAACGAAGG+GGG | 0.702303 | 3.3:+89990184 | MS.gene073062:CDS |
| TTAGGATCAGAATGAAGAGG+CGG | 0.705551 | 3.3:-89987565 | None:intergenic |
| AGCATAACCTGAATGACCGG+CGG | 0.709251 | 3.3:-89987461 | None:intergenic |
| TCGATTGCCCACGCTCAAGG+TGG | 0.713047 | 3.3:+89990438 | MS.gene073062:CDS |
| TAACAACTTGTCCAAAACAG+TGG | 0.715371 | 3.3:-89988646 | None:intergenic |
| ATTCAAGGGTGTATCCAATG+GGG | 0.730624 | 3.3:+89988578 | MS.gene073062:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTCTATAAAATTGTAAG+TGG | + | chr3.3:89989367-89989386 | MS.gene073062:intron | 15.0% |
| !! | TACAACATTAAAATAAACTT+CGG | - | chr3.3:89989480-89989499 | None:intergenic | 15.0% |
| !!! | CAATAAGTGAAATTTTAAAA+AGG | - | chr3.3:89988874-89988893 | None:intergenic | 15.0% |
| !! | ACTGAAGTTGAATAAAATAA+AGG | - | chr3.3:89988328-89988347 | None:intergenic | 20.0% |
| !! | TTTATGGATATGGATAATAT+GGG | + | chr3.3:89987889-89987908 | MS.gene073062:CDS | 20.0% |
| !!! | ATAATAAAATGCTTTTCGAT+TGG | - | chr3.3:89989399-89989418 | None:intergenic | 20.0% |
| !!! | CAACTAGAGTTTTAAAAAAA+AGG | - | chr3.3:89988433-89988452 | None:intergenic | 20.0% |
| !!! | GAAAGTATAAATGTCAAAAA+TGG | - | chr3.3:89988719-89988738 | None:intergenic | 20.0% |
| !!! | TAATAAAATGCTTTTCGATT+GGG | - | chr3.3:89989398-89989417 | None:intergenic | 20.0% |
| !!! | TAGAATATATTTTGCAACAT+CGG | - | chr3.3:89989355-89989374 | None:intergenic | 20.0% |
| ! | ATCATTAGGAAAAACTAAAG+CGG | + | chr3.3:89988981-89989000 | MS.gene073062:CDS | 25.0% |
| ! | CAAATATAGATTGAGAATCT+AGG | - | chr3.3:89989433-89989452 | None:intergenic | 25.0% |
| ! | CTTTATGGATATGGATAATA+TGG | + | chr3.3:89987888-89987907 | MS.gene073062:CDS | 25.0% |
| ! | TAAAATAAACTTCGGTATCT+AGG | - | chr3.3:89989472-89989491 | None:intergenic | 25.0% |
| ! | TGATATTTCTCAAGATCATA+AGG | + | chr3.3:89989762-89989781 | MS.gene073062:CDS | 25.0% |
| ! | TGATGCAAAAAATAGAAACT+TGG | - | chr3.3:89989614-89989633 | None:intergenic | 25.0% |
| !! | GGATTATTTCTTTATGGATA+TGG | + | chr3.3:89987879-89987898 | MS.gene073062:CDS | 25.0% |
| !!! | GAGTTTTAAAAAAAAGGTCT+AGG | - | chr3.3:89988427-89988446 | None:intergenic | 25.0% |
| !!! | TCTATTTTTTGCATCACAAA+TGG | + | chr3.3:89989618-89989637 | MS.gene073062:intron | 25.0% |
| !!! | TTTTCAATTTGTTCTGGTAT+TGG | + | chr3.3:89989546-89989565 | MS.gene073062:intron | 25.0% |
| AAACTAGAAAGGAATTCTTG+AGG | + | chr3.3:89990133-89990152 | MS.gene073062:CDS | 30.0% | |
| AAAGCTAACTAACAAGATGA+AGG | - | chr3.3:89988741-89988760 | None:intergenic | 30.0% | |
| AAATACAAACAATCCGATCT+CGG | + | chr3.3:89990233-89990252 | MS.gene073062:CDS | 30.0% | |
| AATGAAGAAGGTGAAATTGA+AGG | + | chr3.3:89987946-89987965 | MS.gene073062:CDS | 30.0% | |
| ACCAGAACAAATTGAAAACT+AGG | - | chr3.3:89989544-89989563 | None:intergenic | 30.0% | |
| AGAACTAAGAATCTGCATAA+GGG | - | chr3.3:89988175-89988194 | None:intergenic | 30.0% | |
| ATAGAAACTTGGTACTTGAT+TGG | - | chr3.3:89989603-89989622 | None:intergenic | 30.0% | |
| ATCATCTCTTTCTAGATCAT+CGG | - | chr3.3:89990211-89990230 | None:intergenic | 30.0% | |
| CAATTTGGATAATGACATCA+AGG | - | chr3.3:89988400-89988419 | None:intergenic | 30.0% | |
| CTAACATTCAAGACTAATTC+AGG | - | chr3.3:89989309-89989328 | None:intergenic | 30.0% | |
| CTAAGATATCAAATAAGCAC+AGG | - | chr3.3:89989171-89989190 | None:intergenic | 30.0% | |
| GAATCTACTTGATTTCTTTC+AGG | + | chr3.3:89989665-89989684 | MS.gene073062:intron | 30.0% | |
| GAGAAATATCAAGAGATTTG+AGG | - | chr3.3:89989753-89989772 | None:intergenic | 30.0% | |
| GTGCTTATTTGATATCTTAG+TGG | + | chr3.3:89989171-89989190 | MS.gene073062:intron | 30.0% | |
| TATCATTCTAATTTCGCTGA+TGG | + | chr3.3:89988270-89988289 | MS.gene073062:CDS | 30.0% | |
| TCAAGTAGATTCATGAATCA+TGG | - | chr3.3:89989657-89989676 | None:intergenic | 30.0% | |
| TCTTGTGTGTAAATGACTTA+CGG | - | chr3.3:89989007-89989026 | None:intergenic | 30.0% | |
| TGAGTTTAGAAGAGCAATTA+AGG | + | chr3.3:89988134-89988153 | MS.gene073062:CDS | 30.0% | |
| TGATGTCATTATCCAAATTG+CGG | + | chr3.3:89988400-89988419 | MS.gene073062:intron | 30.0% | |
| TGTAAAGTGACACGATTATT+AGG | - | chr3.3:89989511-89989530 | None:intergenic | 30.0% | |
| TTGGAATGTAATCCAAGAAT+GGG | + | chr3.3:89989822-89989841 | MS.gene073062:CDS | 30.0% | |
| ! | ATAACAAGAGCAACAAGTTT+TGG | - | chr3.3:89989102-89989121 | None:intergenic | 30.0% |
| ! | TTGGTGTGTTAGCAAAATTT+TGG | - | chr3.3:89989584-89989603 | None:intergenic | 30.0% |
| ! | TTGGTTAAAGGAAGTTTTCA+AGG | - | chr3.3:89989256-89989275 | None:intergenic | 30.0% |
| ! | TTTGGAATGTAATCCAAGAA+TGG | + | chr3.3:89989821-89989840 | MS.gene073062:CDS | 30.0% |
| ! | TTTTCCTAATGATTCAACAC+TGG | - | chr3.3:89988974-89988993 | None:intergenic | 30.0% |
| !! | AAAACCAAGCTTTTGAAGAA+TGG | + | chr3.3:89990157-89990176 | MS.gene073062:CDS | 30.0% |
| !! | AAACTTGTTGCTCTTGTTAT+TGG | + | chr3.3:89989102-89989121 | MS.gene073062:CDS | 30.0% |
| !! | AACTTGTTGCTCTTGTTATT+GGG | + | chr3.3:89989103-89989122 | MS.gene073062:CDS | 30.0% |
| !! | TAACTTGTTGCTCTTAATGA+GGG | + | chr3.3:89988844-89988863 | MS.gene073062:intron | 30.0% |
| !! | TCCTAGTTTTCAATTTGTTC+TGG | + | chr3.3:89989540-89989559 | MS.gene073062:intron | 30.0% |
| !! | TGAGGTTGATGTGTATAATA+AGG | + | chr3.3:89988035-89988054 | MS.gene073062:CDS | 30.0% |
| !!! | GAGACGAGATTTTTTCTTTT+AGG | - | chr3.3:89989942-89989961 | None:intergenic | 30.0% |
| !!! | GTTTAAGGTTTTTAGTTAGC+TGG | + | chr3.3:89988459-89988478 | MS.gene073062:intron | 30.0% |
| AATCATGCCATGCATAAAGA+AGG | - | chr3.3:89989996-89990015 | None:intergenic | 35.0% | |
| ATCATGCCATGCATAAAGAA+GGG | - | chr3.3:89989995-89990014 | None:intergenic | 35.0% | |
| ATTCTAATTTCGCTGATGGT+CGG | + | chr3.3:89988274-89988293 | MS.gene073062:CDS | 35.0% | |
| CTACTTGATTTCTTTCAGGA+TGG | + | chr3.3:89989669-89989688 | MS.gene073062:intron | 35.0% | |
| CTCTAGTTGTGTGAAGTTTA+AGG | + | chr3.3:89988444-89988463 | MS.gene073062:intron | 35.0% | |
| CTTTATCACTGCAGAAAATG+AGG | - | chr3.3:89990061-89990080 | None:intergenic | 35.0% | |
| GAAACTCTATGAAGAAGTCA+AGG | + | chr3.3:89988680-89988699 | MS.gene073062:CDS | 35.0% | |
| GAAATGTGAGGAAACTAGAA+AGG | + | chr3.3:89990122-89990141 | MS.gene073062:CDS | 35.0% | |
| GAACATATTCTCCCACATAT+TGG | - | chr3.3:89989695-89989714 | None:intergenic | 35.0% | |
| GAAGTTAAAGGAGAAATGTG+AGG | + | chr3.3:89990110-89990129 | MS.gene073062:CDS | 35.0% | |
| GAGAACTAAGAATCTGCATA+AGG | - | chr3.3:89988176-89988195 | None:intergenic | 35.0% | |
| GAGAATGTTGATGTTAATGG+AGG | + | chr3.3:89987970-89987989 | MS.gene073062:CDS | 35.0% | |
| GATATGGATAATATGGGAAG+AGG | + | chr3.3:89987895-89987914 | MS.gene073062:CDS | 35.0% | |
| GATGAGATTGAGAATGAAGA+AGG | + | chr3.3:89987934-89987953 | MS.gene073062:CDS | 35.0% | |
| GGTGAGAATGTTGATGTTAA+TGG | + | chr3.3:89987967-89987986 | MS.gene073062:CDS | 35.0% | |
| GTCCTAAATTTCATGCTTGT+TGG | + | chr3.3:89989283-89989302 | MS.gene073062:intron | 35.0% | |
| GTTTAGAAGAGCAATTAAGG+TGG | + | chr3.3:89988137-89988156 | MS.gene073062:CDS | 35.0% | |
| TAACAACTTGTCCAAAACAG+TGG | - | chr3.3:89988649-89988668 | None:intergenic | 35.0% | |
| TATTGTTGATATGCAGTCGA+TGG | + | chr3.3:89989029-89989048 | MS.gene073062:CDS | 35.0% | |
| TCATCTCTTTCTAGATCATC+GGG | - | chr3.3:89990210-89990229 | None:intergenic | 35.0% | |
| TGCAAGTGATAACATGGAAT+CGG | + | chr3.3:89988553-89988572 | MS.gene073062:CDS | 35.0% | |
| TTTGGACAAGTTGTTAGCAT+GGG | + | chr3.3:89988653-89988672 | MS.gene073062:CDS | 35.0% | |
| ! | ATATCTCTTTGACTTCCCAT+TGG | - | chr3.3:89989138-89989157 | None:intergenic | 35.0% |
| ! | ATTGGGTAAGTATTGCCAAT+GGG | + | chr3.3:89989120-89989139 | MS.gene073062:intron | 35.0% |
| ! | CTTCACGCATTAAGTTTTTG+CGG | - | chr3.3:89987417-89987436 | None:intergenic | 35.0% |
| ! | GAAATTTAGGACGTTGTCAT+TGG | - | chr3.3:89989275-89989294 | None:intergenic | 35.0% |
| ! | GGCTTGGGATTATTTCTTTA+TGG | + | chr3.3:89987873-89987892 | MS.gene073062:CDS | 35.0% |
| ! | TATTGGGTAAGTATTGCCAA+TGG | + | chr3.3:89989119-89989138 | MS.gene073062:intron | 35.0% |
| ! | TGATTTGCAATGACATTAGC+AGG | + | chr3.3:89988504-89988523 | MS.gene073062:intron | 35.0% |
| ! | TTTTGGACAAGTTGTTAGCA+TGG | + | chr3.3:89988652-89988671 | MS.gene073062:CDS | 35.0% |
| !! | GTAACTTGTTGCTCTTAATG+AGG | + | chr3.3:89988843-89988862 | MS.gene073062:intron | 35.0% |
| !! | GTTTTCAAGGAAGTTCACAA+CGG | - | chr3.3:89989243-89989262 | None:intergenic | 35.0% |
| !!! | GTGACCAAAGTTTTAAATCG+CGG | + | chr3.3:89988362-89988381 | MS.gene073062:intron | 35.0% |
| !!! | TCTTTTAGGTTGCTTTCGAT+GGG | - | chr3.3:89989928-89989947 | None:intergenic | 35.0% |
| !!! | TGACCAAAGTTTTAAATCGC+GGG | + | chr3.3:89988363-89988382 | MS.gene073062:intron | 35.0% |
| !!! | TTCTTTTAGGTTGCTTTCGA+TGG | - | chr3.3:89989929-89989948 | None:intergenic | 35.0% |
| AAAGACGATCATACTTCAGC+AGG | + | chr3.3:89990077-89990096 | MS.gene073062:CDS | 40.0% | |
| AACATGGAATCGGTCATTCA+AGG | + | chr3.3:89988563-89988582 | MS.gene073062:CDS | 40.0% | |
| ACAACTGAGAATCGCGAATA+TGG | - | chr3.3:89989077-89989096 | None:intergenic | 40.0% | |
| ACATCAACCTCAACTTTCTC+CGG | - | chr3.3:89988027-89988046 | None:intergenic | 40.0% | |
| ACATCCAAGCTCTTTATAGC+TGG | + | chr3.3:89989884-89989903 | MS.gene073062:CDS | 40.0% | |
| ACATGGAATCGGTCATTCAA+GGG | + | chr3.3:89988564-89988583 | MS.gene073062:CDS | 40.0% | |
| ATAATCCCAAGCCATGTTCT+TGG | - | chr3.3:89987866-89987885 | None:intergenic | 40.0% | |
| ATCACTTTACTCCCAGAAGA+AGG | - | chr3.3:89987820-89987839 | None:intergenic | 40.0% | |
| ATCTGCATAAGGGTAACAGA+AGG | - | chr3.3:89988165-89988184 | None:intergenic | 40.0% | |
| ATTGCTCTTCTAAACTCAGC+AGG | - | chr3.3:89988132-89988151 | None:intergenic | 40.0% | |
| ATTGTTGAAGAGGTGGAAGA+AGG | + | chr3.3:89987742-89987761 | MS.gene073062:CDS | 40.0% | |
| CAAATTGTGACTCCCATTCT+TGG | - | chr3.3:89989837-89989856 | None:intergenic | 40.0% | |
| CATAGCATAACCTGAATGAC+CGG | - | chr3.3:89987467-89987486 | None:intergenic | 40.0% | |
| CTAAGATGCTTGAAGCTACT+AGG | + | chr3.3:89988241-89988260 | MS.gene073062:CDS | 40.0% | |
| GAGTCATGCAAGTGATAACA+TGG | + | chr3.3:89988547-89988566 | MS.gene073062:CDS | 40.0% | |
| GATTACATTCCAAAGCTGCA+CGG | - | chr3.3:89989815-89989834 | None:intergenic | 40.0% | |
| GGAGGAAGAGATGAAGTTAA+AGG | + | chr3.3:89990098-89990117 | MS.gene073062:CDS | 40.0% | |
| GGCCAACAAGCATGAAATTT+AGG | - | chr3.3:89989288-89989307 | None:intergenic | 40.0% | |
| GGTACCATTCTTCAAAAGCT+TGG | - | chr3.3:89990164-89990183 | None:intergenic | 40.0% | |
| TAGAAAACACGACAGTACAG+TGG | - | chr3.3:89988791-89988810 | None:intergenic | 40.0% | |
| TGAGGATGATGTGATAAGAG+AGG | + | chr3.3:89988074-89988093 | MS.gene073062:CDS | 40.0% | |
| TGATGTTAATGGAGGACATG+TGG | + | chr3.3:89987978-89987997 | MS.gene073062:CDS | 40.0% | |
| TTAGCTGGAATTGACATGCA+AGG | + | chr3.3:89988474-89988493 | MS.gene073062:intron | 40.0% | |
| TTAGGATCAGAATGAAGAGG+CGG | - | chr3.3:89987568-89987587 | None:intergenic | 40.0% | |
| TTCACTTATTGTCGACAGCA+AGG | + | chr3.3:89988883-89988902 | MS.gene073062:intron | 40.0% | |
| TTCTAATTTCGCTGATGGTC+GGG | + | chr3.3:89988275-89988294 | MS.gene073062:CDS | 40.0% | |
| TTGTTGAAGAGGTGGAAGAA+GGG | + | chr3.3:89987743-89987762 | MS.gene073062:CDS | 40.0% | |
| TTTCAGGATGGCCAATATGT+GGG | + | chr3.3:89989681-89989700 | MS.gene073062:intron | 40.0% | |
| ! | AGAAACACATGCCACTGTTT+TGG | + | chr3.3:89988635-89988654 | MS.gene073062:CDS | 40.0% |
| ! | AGGACGTTGTCATTGGTTAA+AGG | - | chr3.3:89989268-89989287 | None:intergenic | 40.0% |
| ! | ATTCAAGGGTGTATCCAATG+GGG | + | chr3.3:89988578-89988597 | MS.gene073062:CDS | 40.0% |
| ! | CATTCAAGGGTGTATCCAAT+GGG | + | chr3.3:89988577-89988596 | MS.gene073062:CDS | 40.0% |
| ! | GGTCTGTAACTATTTTCAGC+TGG | - | chr3.3:89989732-89989751 | None:intergenic | 40.0% |
| ! | GGTTTAGGATCAGAATGAAG+AGG | - | chr3.3:89987571-89987590 | None:intergenic | 40.0% |
| ! | TCATTCAAGGGTGTATCCAA+TGG | + | chr3.3:89988576-89988595 | MS.gene073062:CDS | 40.0% |
| ! | TTGCAACATCGGTTACTACT+AGG | - | chr3.3:89989344-89989363 | None:intergenic | 40.0% |
| !! | ACCAGAAGCATTTACAACGA+AGG | + | chr3.3:89990181-89990200 | MS.gene073062:CDS | 40.0% |
| !! | AGAAGCATTTACAACGAAGG+GGG | + | chr3.3:89990184-89990203 | MS.gene073062:CDS | 40.0% |
| !! | CAGAAGCATTTACAACGAAG+GGG | + | chr3.3:89990183-89990202 | MS.gene073062:CDS | 40.0% |
| !! | CCAGAAGCATTTACAACGAA+GGG | + | chr3.3:89990182-89990201 | MS.gene073062:CDS | 40.0% |
| ACAAACTGCTTCTCCGAGAT+CGG | - | chr3.3:89990249-89990268 | None:intergenic | 45.0% | |
| AGAGAAGCCGGTGAGAAATT+AGG | - | chr3.3:89987640-89987659 | None:intergenic | 45.0% | |
| AGGTGACATTGTTGAAGAGG+TGG | + | chr3.3:89987735-89987754 | MS.gene073062:CDS | 45.0% | |
| ATCGGTTACTACTAGGATGC+TGG | - | chr3.3:89989337-89989356 | None:intergenic | 45.0% | |
| ATGTTCTTGGAATCCGGCAA+AGG | - | chr3.3:89987853-89987872 | None:intergenic | 45.0% | |
| CAAGCCATGTTCTTGGAATC+CGG | - | chr3.3:89987859-89987878 | None:intergenic | 45.0% | |
| CCCTTCGTTGTAAATGCTTC+TGG | - | chr3.3:89990185-89990204 | None:intergenic | 45.0% | |
| CTTTCAGGATGGCCAATATG+TGG | + | chr3.3:89989680-89989699 | MS.gene073062:intron | 45.0% | |
| GCATAAAGAAGGGCTTGGAT+TGG | - | chr3.3:89989985-89990004 | None:intergenic | 45.0% | |
| GCTATGGCTCTCAAAAACAC+CGG | + | chr3.3:89987481-89987500 | MS.gene073062:CDS | 45.0% | |
| GGAATTGACATGCAAGGTTG+AGG | + | chr3.3:89988480-89988499 | MS.gene073062:intron | 45.0% | |
| GGAGCATGAACATGTACATG+AGG | + | chr3.3:89988056-89988075 | MS.gene073062:CDS | 45.0% | |
| GGATTCCAAGAACATGGCTT+GGG | + | chr3.3:89987858-89987877 | MS.gene073062:CDS | 45.0% | |
| GGGAAGAGGTTCTTTGAATG+AGG | + | chr3.3:89987909-89987928 | MS.gene073062:CDS | 45.0% | |
| TCAACTTTCTCCGGTGTCTT+GGG | - | chr3.3:89988018-89988037 | None:intergenic | 45.0% | |
| TCCAAGCCCTTCTTTATGCA+TGG | + | chr3.3:89989986-89990005 | MS.gene073062:CDS | 45.0% | |
| TCTAATTTCGCTGATGGTCG+GGG | + | chr3.3:89988276-89988295 | MS.gene073062:CDS | 45.0% | |
| TCTTCCGCCTAATTTCTCAC+CGG | + | chr3.3:89987630-89987649 | MS.gene073062:CDS | 45.0% | |
| TGAGATTGAACCCAAGACAC+CGG | + | chr3.3:89988005-89988024 | MS.gene073062:CDS | 45.0% | |
| TGAGCCAGCTATAAAGAGCT+TGG | - | chr3.3:89989891-89989910 | None:intergenic | 45.0% | |
| TGGAGGTGACATTGTTGAAG+AGG | + | chr3.3:89987732-89987751 | MS.gene073062:CDS | 45.0% | |
| TGTTAATGGAGGACATGTGG+AGG | + | chr3.3:89987981-89988000 | MS.gene073062:CDS | 45.0% | |
| TTTGCCGGATTCCAAGAACA+TGG | + | chr3.3:89987852-89987871 | MS.gene073062:CDS | 45.0% | |
| ! | AAAGGTCTAGGACCGCAATT+TGG | - | chr3.3:89988415-89988434 | None:intergenic | 45.0% |
| ! | CGGTCATTCAGGTTATGCTA+TGG | + | chr3.3:89987465-89987484 | MS.gene073062:CDS | 45.0% |
| ! | GGACTCAACAGTTTCTGAAG+TGG | + | chr3.3:89989050-89989069 | MS.gene073062:CDS | 45.0% |
| ! | GTGCCCGCGATTTAAAACTT+TGG | - | chr3.3:89988369-89988388 | None:intergenic | 45.0% |
| ! | TAAAGAAGGGCTTGGATTGG+TGG | - | chr3.3:89989982-89990001 | None:intergenic | 45.0% |
| !!! | ATTGGTGGATTTTGGGCTCT+TGG | - | chr3.3:89989967-89989986 | None:intergenic | 45.0% |
| !!! | GGCTTGGATTGGTGGATTTT+GGG | - | chr3.3:89989974-89989993 | None:intergenic | 45.0% |
| AAGATCGGCGGTGGAATTAG+TGG | + | chr3.3:89987709-89987728 | MS.gene073062:CDS | 50.0% | |
| AGCATAACCTGAATGACCGG+CGG | - | chr3.3:89987464-89987483 | None:intergenic | 50.0% | |
| CAAGACACCGGAGAAAGTTG+AGG | + | chr3.3:89988017-89988036 | MS.gene073062:CDS | 50.0% | |
| CAGTTACAGCACCGCAAGAT+CGG | + | chr3.3:89987694-89987713 | MS.gene073062:CDS | 50.0% | |
| CGCCATCTTCTCCTTCTTCT+GGG | + | chr3.3:89987806-89987825 | MS.gene073062:CDS | 50.0% | |
| CGGATTCCAAGAACATGGCT+TGG | + | chr3.3:89987857-89987876 | MS.gene073062:CDS | 50.0% | |
| CTCAACTTTCTCCGGTGTCT+TGG | - | chr3.3:89988019-89988038 | None:intergenic | 50.0% | |
| CTCCCAGAAGAAGGAGAAGA+TGG | - | chr3.3:89987811-89987830 | None:intergenic | 50.0% | |
| CTGAACAAGCAGAAGAAGCG+TGG | + | chr3.3:89988946-89988965 | MS.gene073062:CDS | 50.0% | |
| GAAGAGGTGGAAGAAGGGAA+AGG | + | chr3.3:89987748-89987767 | MS.gene073062:CDS | 50.0% | |
| GAAGCCGGTGAGAAATTAGG+CGG | - | chr3.3:89987637-89987656 | None:intergenic | 50.0% | |
| GACGATCATACTTCAGCAGG+AGG | + | chr3.3:89990080-89990099 | MS.gene073062:CDS | 50.0% | |
| GAGAAATTAGGCGGAAGAGG+CGG | - | chr3.3:89987628-89987647 | None:intergenic | 50.0% | |
| GAGTATAATCCGATAGCGCG+CGG | - | chr3.3:89990386-89990405 | None:intergenic | 50.0% | |
| GCCATGCATAAAGAAGGGCT+TGG | - | chr3.3:89989990-89990009 | None:intergenic | 50.0% | |
| GGTGAGAAATTAGGCGGAAG+AGG | - | chr3.3:89987631-89987650 | None:intergenic | 50.0% | |
| TAATTCCACCGCCGATCTTG+CGG | - | chr3.3:89987708-89987727 | None:intergenic | 50.0% | |
| TGCTGTAACTGCAACGACAC+AGG | - | chr3.3:89987685-89987704 | None:intergenic | 50.0% | |
| TGTAACTGCAACGACACAGG+CGG | - | chr3.3:89987682-89987701 | None:intergenic | 50.0% | |
| TTCTTGGAATCCGGCAAAGG+CGG | - | chr3.3:89987850-89987869 | None:intergenic | 50.0% | |
| ! | AAGGGTGTATCCAATGGGGA+GGG | + | chr3.3:89988582-89988601 | MS.gene073062:CDS | 50.0% |
| ! | ACAGAGCGTTTGAGAGAAGC+CGG | - | chr3.3:89987652-89987671 | None:intergenic | 50.0% |
| ! | ATCTTTTCCACCCTCCCCAT+TGG | - | chr3.3:89988595-89988614 | None:intergenic | 50.0% |
| ! | GGCGCCAGTGTTGAATCATT+AGG | + | chr3.3:89988967-89988986 | MS.gene073062:CDS | 50.0% |
| !!! | GCAAGCGAGTTTTGAGACTC+TGG | - | chr3.3:89990353-89990372 | None:intergenic | 50.0% |
| !!! | GGGCTTGGATTGGTGGATTT+TGG | - | chr3.3:89989975-89989994 | None:intergenic | 50.0% |
| AAATTAGGCGGAAGAGGCGG+TGG | - | chr3.3:89987625-89987644 | None:intergenic | 55.0% | |
| AAGTCGATTGCCCACGCTCA+AGG | + | chr3.3:89990435-89990454 | MS.gene073062:CDS | 55.0% | |
| AGGGATTCTTCCAAAGGCGG+TGG | - | chr3.3:89987595-89987614 | None:intergenic | 55.0% | |
| AGTTTCGCCGTGAGCGTAGT+CGG | - | chr3.3:89987518-89987537 | None:intergenic | 55.0% | |
| ATCGGCGGTGGAATTAGTGG+TGG | + | chr3.3:89987712-89987731 | MS.gene073062:CDS | 55.0% | |
| CATTCCAAAGCTGCACGGTG+CGG | - | chr3.3:89989810-89989829 | None:intergenic | 55.0% | |
| GAGGTGGAAGAAGGGAAAGG+CGG | + | chr3.3:89987751-89987770 | MS.gene073062:CDS | 55.0% | |
| GATTCTTCCAAAGGCGGTGG+AGG | - | chr3.3:89987592-89987611 | None:intergenic | 55.0% | |
| GCAGATTTCGCTAGCTCGTC+AGG | - | chr3.3:89990033-89990052 | None:intergenic | 55.0% | |
| GCGCCATCTTCTCCTTCTTC+TGG | + | chr3.3:89987805-89987824 | MS.gene073062:CDS | 55.0% | |
| GGAGGGAGGGATTCTTCCAA+AGG | - | chr3.3:89987601-89987620 | None:intergenic | 55.0% | |
| GGATCAGAATGAAGAGGCGG+TGG | - | chr3.3:89987565-89987584 | None:intergenic | 55.0% | |
| GGGAGGGATTCTTCCAAAGG+CGG | - | chr3.3:89987598-89987617 | None:intergenic | 55.0% | |
| GGTGCGGTCGTAATGATGCT+TGG | - | chr3.3:89989794-89989813 | None:intergenic | 55.0% | |
| TCCAAAGGCGGTGGAGGTTT+AGG | - | chr3.3:89987586-89987605 | None:intergenic | 55.0% | |
| TCCTAAACCTCCACCGCCTT+TGG | + | chr3.3:89987582-89987601 | MS.gene073062:CDS | 55.0% | |
| TTACAGCACCGCAAGATCGG+CGG | + | chr3.3:89987697-89987716 | MS.gene073062:CDS | 55.0% | |
| ! | CAAGGGTGTATCCAATGGGG+AGG | + | chr3.3:89988581-89988600 | MS.gene073062:CDS | 55.0% |
| !! | GGTGGATTTTGGGCTCTTGG+CGG | - | chr3.3:89989964-89989983 | None:intergenic | 55.0% |
| ATTGCCCACGCTCAAGGTGG+TGG | + | chr3.3:89990441-89990460 | MS.gene073062:CDS | 60.0% | |
| GAAGGAGAAGATGGCGCGTG+AGG | - | chr3.3:89987802-89987821 | None:intergenic | 60.0% | |
| GCTCTCTCCGACTACGCTCA+CGG | + | chr3.3:89987508-89987527 | MS.gene073062:CDS | 60.0% | |
| GGCGGTGGAATTAGTGGTGG+AGG | + | chr3.3:89987715-89987734 | MS.gene073062:CDS | 60.0% | |
| GGGAAAGGCGGTGATGCTGA+TGG | + | chr3.3:89987763-89987782 | MS.gene073062:CDS | 60.0% | |
| GGTGTATCCAATGGGGAGGG+TGG | + | chr3.3:89988585-89988604 | MS.gene073062:CDS | 60.0% | |
| GTGAGCGTAGTCGGAGAGAG+CGG | - | chr3.3:89987509-89987528 | None:intergenic | 60.0% | |
| TCGATTGCCCACGCTCAAGG+TGG | + | chr3.3:89990438-89990457 | MS.gene073062:CDS | 60.0% | |
| TGAGCTCTTCCGCGCGCTAT+CGG | + | chr3.3:89990374-89990393 | MS.gene073062:CDS | 60.0% | |
| TTGGAATCCGGCAAAGGCGG+TGG | - | chr3.3:89987847-89987866 | None:intergenic | 60.0% | |
| AAGAGGCGGTGGAGGAGGGA+GGG | - | chr3.3:89987614-89987633 | None:intergenic | 65.0% | |
| ACCTGAATGACCGGCGGCGA+AGG | - | chr3.3:89987458-89987477 | None:intergenic | 65.0% | |
| ACGACCGCACCGTGCAGCTT+TGG | + | chr3.3:89989803-89989822 | MS.gene073062:CDS | 65.0% | |
| CGCACCACCACCTTGAGCGT+GGG | - | chr3.3:89990448-89990467 | None:intergenic | 65.0% | |
| GAATCCGGCAAAGGCGGTGG+CGG | - | chr3.3:89987844-89987863 | None:intergenic | 65.0% | |
| GATAGCGCGCGGAAGAGCTC+AGG | - | chr3.3:89990375-89990394 | None:intergenic | 65.0% | |
| GCTCGTAATGCCTTCGCCGC+CGG | + | chr3.3:89987445-89987464 | MS.gene073062:CDS | 65.0% | |
| TTAGGCGGAAGAGGCGGTGG+AGG | - | chr3.3:89987622-89987641 | None:intergenic | 65.0% | |
| ! | CCACGCTCAAGGTGGTGGTG+CGG | + | chr3.3:89990446-89990465 | MS.gene073062:CDS | 65.0% |
| !! | GGCGGCGAAGGCATTACGAG+CGG | - | chr3.3:89987446-89987465 | None:intergenic | 65.0% |
| CAGCACCGCAAGATCGGCGG+TGG | + | chr3.3:89987700-89987719 | MS.gene073062:CDS | 70.0% | |
| CCGCACCACCACCTTGAGCG+TGG | - | chr3.3:89990449-89990468 | None:intergenic | 70.0% | |
| GAAGAGGCGGTGGAGGAGGG+AGG | - | chr3.3:89987615-89987634 | None:intergenic | 70.0% | |
| GATGCCGCCACCGCCTTTGC+CGG | + | chr3.3:89987837-89987856 | MS.gene073062:CDS | 70.0% | |
| GCCTTCGCCGCCGGTCATTC+AGG | + | chr3.3:89987454-89987473 | MS.gene073062:CDS | 70.0% | |
| GCGGAAGAGGCGGTGGAGGA+GGG | - | chr3.3:89987618-89987637 | None:intergenic | 70.0% | |
| GTAGTCGGAGAGAGCGGCGC+CGG | - | chr3.3:89987503-89987522 | None:intergenic | 70.0% | |
| GGCGGAAGAGGCGGTGGAGG+AGG | - | chr3.3:89987619-89987638 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 89987358 | 89990473 | 89987358 | ID=MS.gene073062 |
| chr3.3 | mRNA | 89987358 | 89990473 | 89987358 | ID=MS.gene073062.t1;Parent=MS.gene073062 |
| chr3.3 | exon | 89987358 | 89988297 | 89987358 | ID=MS.gene073062.t1.exon1;Parent=MS.gene073062.t1 |
| chr3.3 | CDS | 89987358 | 89988297 | 89987358 | ID=cds.MS.gene073062.t1;Parent=MS.gene073062.t1 |
| chr3.3 | exon | 89988526 | 89988701 | 89988526 | ID=MS.gene073062.t1.exon2;Parent=MS.gene073062.t1 |
| chr3.3 | CDS | 89988526 | 89988701 | 89988526 | ID=cds.MS.gene073062.t1;Parent=MS.gene073062.t1 |
| chr3.3 | exon | 89988901 | 89989124 | 89988901 | ID=MS.gene073062.t1.exon3;Parent=MS.gene073062.t1 |
| chr3.3 | CDS | 89988901 | 89989124 | 89988901 | ID=cds.MS.gene073062.t1;Parent=MS.gene073062.t1 |
| chr3.3 | exon | 89989687 | 89990473 | 89989687 | ID=MS.gene073062.t1.exon4;Parent=MS.gene073062.t1 |
| chr3.3 | CDS | 89989687 | 89990473 | 89989687 | ID=cds.MS.gene073062.t1;Parent=MS.gene073062.t1 |
| Gene Sequence |
| Protein sequence |
