AlfalfaGEDB | MS.gene066779

M. sativa cultivar XinJiangDaYe / MS.gene066779

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0019904
PFAM: PF00244.23

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066779.t1	XP_003614051.1	99.6	259	1	0	1	259	1	259	7.40E-137	496.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066779.t1	Q9C5W6	86.1	251	35	0	3	253	6	256	1.3e-116	420.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066779.t1	G7JWT4	99.6	259	1	0	1	259	1	259	5.4e-137	496.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049844	MS.gene066779	0.800944	1.14E-48	-1.69E-46
MS.gene050874	MS.gene066779	0.817133	3.86E-52	-1.69E-46
MS.gene050875	MS.gene066779	0.841234	5.38E-58	-1.69E-46
MS.gene051025	MS.gene066779	0.809465	1.87E-50	-1.69E-46
MS.gene051914	MS.gene066779	0.845499	3.91E-59	-1.69E-46
MS.gene052169	MS.gene066779	0.831683	1.45E-55	-1.69E-46
MS.gene053173	MS.gene066779	0.809492	1.84E-50	-1.69E-46
MS.gene054018	MS.gene066779	0.850411	1.73E-60	-1.69E-46
MS.gene054459	MS.gene066779	0.810909	9.12E-51	-1.69E-46
MS.gene054551	MS.gene066779	0.801404	9.15E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene066779	MS.gene013133	PPI
MS.gene066779	MS.gene028807	PPI
MS.gene066779	MS.gene013047	PPI
MS.gene066779	MS.gene64150	PPI
MS.gene066779	MS.gene050079	PPI
MS.gene066779	MS.gene38593	PPI
MS.gene066779	MS.gene020411	PPI
MS.gene066779	MS.gene043907	PPI
MS.gene066779	MS.gene48435	PPI
MS.gene066779	MS.gene010179	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066779.t1	MTR_5g044160	99.614	259	1	0	1	259	1	259	0.0	531
MS.gene066779.t1	MTR_4g083060	89.147	258	27	1	1	258	1	257	5.71e-174	481
MS.gene066779.t1	MTR_2g091225	75.502	249	60	1	1	249	1	248	1.69e-142	400
MS.gene066779.t1	MTR_8g086270	76.735	245	57	0	1	245	1	245	3.16e-141	397
MS.gene066779.t1	MTR_2g076960	73.790	248	65	0	2	249	3	250	1.40e-138	390
MS.gene066779.t1	MTR_2g015980	75.309	243	58	2	11	253	9	249	3.37e-135	382
MS.gene066779.t1	MTR_2g091225	76.000	225	53	1	25	249	2	225	2.74e-129	366
MS.gene066779.t1	MTR_3g099380	70.817	257	72	3	2	256	3	258	1.75e-127	362
MS.gene066779.t1	MTR_5g064580	68.627	255	75	2	2	254	3	254	6.30e-124	353
MS.gene066779.t1	MTR_3g100620	66.809	235	75	1	7	238	11	245	2.16e-113	326

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066779.t1	AT1G26480	84.231	260	36	1	2	256	5	264	1.11e-162	451
MS.gene066779.t1	AT1G34760	79.835	243	48	1	4	246	2	243	1.06e-143	403
MS.gene066779.t1	AT1G34760	79.835	243	48	1	4	246	2	243	1.19e-143	403
MS.gene066779.t1	AT2G42590	74.219	256	65	1	1	255	1	256	6.91e-141	396
MS.gene066779.t1	AT2G42590	74.219	256	65	1	1	255	1	256	7.30e-141	397
MS.gene066779.t1	AT2G42590	73.725	255	67	0	1	255	1	255	1.60e-139	392
MS.gene066779.t1	AT1G22300	74.400	250	64	0	4	253	2	251	2.06e-135	382
MS.gene066779.t1	AT1G22300	74.400	250	64	0	4	253	2	251	3.61e-135	381
MS.gene066779.t1	AT1G22300	76.250	240	57	0	4	243	2	241	6.60e-134	378
MS.gene066779.t1	AT1G35160	72.619	252	67	2	7	256	11	262	2.17e-127	362

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Find 60 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCTTGGCCAAGTAAACT+TGG	0.423724	5.2:-34510000	None:intergenic
AACATTAGCTTCTGCCGAGG+TGG	0.575120	5.2:-34511109	None:intergenic
AACTTACAGGGCCTGCCATT+TGG	0.370260	5.2:+34512214	MS.gene066779:intron
AAGATCAGTGTTTGCAGTGG+CGG	0.557206	5.2:-34512034	None:intergenic
AAGCTTGGCCAAGTAAACTT+GGG	0.611139	5.2:-34509999	None:intergenic
AATCAGAGGTCCAGAGAGTC+AGG	0.404705	5.2:-34512334	None:intergenic
ACCTCTGATTTGCCAGAGGA+TGG	0.501755	5.2:+34512347	MS.gene066779:CDS
ACTTGATGTTGAACTAACTG+TGG	0.647498	5.2:+34510870	MS.gene066779:CDS
AGACGGATTGGATGTGTTGA+TGG	0.480349	5.2:-34512057	None:intergenic
AGAGTTCCTCCTCAACCTTT+TGG	0.345006	5.2:-34511032	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACATAGAATCTGTATGAC+TGG	+	chr5.2:34511309-34511328	MS.gene066779:intron	30.0%
AAAGGTTAATACTCTCTTAC+AGG	+	chr5.2:34512845-34512864	MS.gene066779:intron	30.0%
AAATTAATCTTCCCCTGATA+CGG	-	chr5.2:34510720-34510739	None:intergenic	30.0%
ACAACAGTAATGACTAATGA+TGG	+	chr5.2:34510608-34510627	MS.gene066779:intron	30.0%
ACCTATACTTTCAATGTGTT+TGG	-	chr5.2:34512507-34512526	None:intergenic	30.0%
AGTAGGACTTAATCATGAAA+CGG	-	chr5.2:34511396-34511415	None:intergenic	30.0%
ATAGGTATATATTGTTGGGT+AGG	+	chr5.2:34512521-34512540	MS.gene066779:intron	30.0%
ATGATAAGGACTACGAAATA+TGG	+	chr5.2:34511646-34511665	MS.gene066779:intron	30.0%
ATTTATCGCTATCTTCGTTA+TGG	+	chr5.2:34511223-34511242	MS.gene066779:intron	30.0%
CAACAGTAATGACTAATGAT+GGG	+	chr5.2:34510609-34510628	MS.gene066779:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.2	gene	34509974	34513147	34509974	ID=MS.gene066779
chr5.2	mRNA	34509974	34513147	34509974	ID=MS.gene066779.t1;Parent=MS.gene066779
chr5.2	exon	34509974	34510046	34509974	ID=MS.gene066779.t1.exon1;Parent=MS.gene066779.t1
chr5.2	CDS	34509974	34510046	34509974	ID=cds.MS.gene066779.t1;Parent=MS.gene066779.t1
chr5.2	exon	34510839	34511145	34510839	ID=MS.gene066779.t1.exon2;Parent=MS.gene066779.t1
chr5.2	CDS	34510839	34511145	34510839	ID=cds.MS.gene066779.t1;Parent=MS.gene066779.t1
chr5.2	exon	34511838	34511925	34511838	ID=MS.gene066779.t1.exon3;Parent=MS.gene066779.t1
chr5.2	CDS	34511838	34511925	34511838	ID=cds.MS.gene066779.t1;Parent=MS.gene066779.t1
chr5.2	exon	34512027	34512136	34512027	ID=MS.gene066779.t1.exon4;Parent=MS.gene066779.t1
chr5.2	CDS	34512027	34512136	34512027	ID=cds.MS.gene066779.t1;Parent=MS.gene066779.t1
chr5.2	exon	34512223	34512371	34512223	ID=MS.gene066779.t1.exon5;Parent=MS.gene066779.t1
chr5.2	CDS	34512223	34512371	34512223	ID=cds.MS.gene066779.t1;Parent=MS.gene066779.t1
chr5.2	exon	34512867	34512913	34512867	ID=MS.gene066779.t1.exon6;Parent=MS.gene066779.t1
chr5.2	CDS	34512867	34512913	34512867	ID=cds.MS.gene066779.t1;Parent=MS.gene066779.t1
chr5.2	exon	34513142	34513147	34513142	ID=MS.gene066779.t1.exon7;Parent=MS.gene066779.t1
chr5.2	CDS	34513142	34513147	34513142	ID=cds.MS.gene066779.t1;Parent=MS.gene066779.t1

Gene Sequence

>MS.gene066779

ATGTCCGCTGAGAAAGAGAGAGAGACCCAAGTTTACTTGGCCAAGCTTTCCGAACAAGCTGAAAGATATGAAGGTTATGTTTTTAATTTTGTTATTTTTTAATGGGTTTGGGTTTTTTTTATGTTTTTTATGCTGACATTGTTCTAGATCTGTTTTTTTGTTGTGATTTGGGTTTGAAATGTGTGTTAAGATGTAAAAGATTTGATTTTTTGATTTGGGTATTTATCATTGTTTATAGATCAATCATTTTCTAGATTGGATAAATTTACATTTAATTACTATTTTATTTTATTTTAATTTTGAAGGTGGTTCTTGCTGATGCATTGATTGGAAATTTGTTTGAATTAAATTAGATTAAACTATTAATTGTTTATTGATGTGTCATTGTGTTGGATTTCCGTGTTACTTGTTTGATTTGATGCTTAGATTAGGAAACTGGATCTTCTAAATTGAGAAATTTGGTAAAATATGTTATCTAAAAATGTTGGTAAGAAATTTAACAGTTGATGTTATGTGTACATTCATAATAAATTATGGATGTGTTGGAACATTTCCCTTTGATTGCGTCGTTGAAATTGAGATTACATACTTTACCTTTTAAAGTGAATTGTTCAATTTTAAGAAGCTAAATTCAACAACAGTAATGACTAATGATGGGAATTATGCTTGGAAACAGATATGACTTACCAAAGTGATGTTATAGACCCAAATTGGCCAGTCCATTATTAAACACGTAATTTTTACCGTATCAGGGGAAGATTAATTTGTTAATAGTTTGTTCAGTTTTATTTTGTTCCATGTTGAAAACTGTATAATTTTCAAATAATATTGTTGACGCTTCTGAAAATATGTATTCAATATGCAGAAATGGTTGAATGTATGAAGAAAGTGGCAAAACTTGATGTTGAACTAACTGTGGAAGAGAGGAACCTCCTCTCAGTTGGATATAAAAACGTCATTGGTGCACGAAGAGCTTCATGGCGCATTATGTCCTCAATTGAGCAGAAGGAGGAGTCTAAGGGTAATGAACACAATGTTAAAATGATCAAGAGTTACTGCCAAAAGGTTGAGGAGGAACTCTCCAAAATCTGTGGTGATATTCTGACAATTATTGACCAGCATCTGGTTCCTGCTTCCACCTCGGCAGAAGCTAATGTTTTCTATCATAAGATGTGAGTCATATTTGCTACACTGCTTCTGTACTACTTGATTGATTGATTCAAATCCTTTCCGACTTGTTGGCCATCAGATTTATCGCTATCTTCGTTATGGAATACTTTCTTCCTTTTAGTAGACATATTATTTTAGATTCAAAGATATCATCATAGTTCTGACAAACATAGAATCTGTATGACTGGTGGTTTCTTTACTTCTTTTTTTTTGCCTTGCATATTTGTTATCCACCTGGTAGATGAGCACCCGTTTCATGATTAAGTCCTACTATGAATGAGTCATTGGATTTGTGTGTTTATATTCCGCTCAAGTTATAGGGTTTCAGATAAAGATGGAAGTAAATTAGACTTTGAATTCTAGTTAATTATGGATTATAGATATAGATACTACATTATAGGTTATAGATTACAGGTTGATATGATTGATGATACGATACAAAAGACTAAACACTATCCCTTGTTTATTAAACTCCTAACTAGAATCTAACAGTGAAGAACTCATGATAAGGACTACGAAATATGGAAACTGGAAAGATAGTTTAAGTTACTCTAAAGATAATATCGAGATATTATTACATATTCTCATATTCTTTAACATATTCTGCTCATCCTTATGTGATATGAAATCTCTTTCTGGCTCACACGTACTTTGGCTCTCTATCCCTGATTTCCTTATGCTTATTTTGATGCAGGAAAGGGGATTATTTCCGGTATCTTGCTGAGTTCAAGACTGACCAAGAGAGAAAAGAGGCTGCTGAGCAGTCACTGAAAGGATACGAGGTTTGTATTTCAGCACTAAAGTGATTCATTAATAAATTATTTCTGATGGTTATCTGTATATTGTGCTGTTTCTTGATTTTCACAACTGTTTTGATTATTAGGCTGCTTCCGCCACTGCAAACACTGATCTTCCATCAACACATCCAATCCGTCTTGGACTTGCACTCAACTTCTCTGTCTTTTATTATGAGATTATGAACTCTCCTGAAAGGTAAGCAATCGATTCTCTCATACTTTGCATGGTTCTGTTGCTTTTGTTTCTATCTATTGTCTAAATGGTGGTGATAAAACTTACAGGGCCTGCCATTTGGCCAAACAAGCTTTTGATGAGGCGATTGCAGAGTTGGATACCTTGAGTGAAGAGTCGTACAAGGACAGCACTTTGATCATGCAGTTGTTGAGAGACAACCTGACTCTCTGGACCTCTGATTTGCCAGAGGATGGAGGTAAGGGATAATGACTAACACTTGATTTAAGATGCATCTGTGTTGCACGTCCTTCAAGATCTCCAGTTTTTTGCTTTTAAAAATTAGGGATATATTGCCCTGAGATCCAAGATTTTTAATCTGGATGCCAAACCAAACACATTGAAAGTATAGGTATATATTGTTGGGTAGGTTGGCATTCCATATCCTAGTGGGGACAAATGCTCCCATTGTCCACCAAGTTGACTTGTCCCTAATCACCGCAAGAGTAATCATCCACTCGATTTGTATCCTTACCCCAACCTTGTCAAAAAATTAGGATGAGTATAAACTAAGAAACTGTGCCTGCTATTGGATAAATTATCCAGAAAACCATAGTCATATTGTTTCCAGAGTGAGTTTCTTCTAGTGAATCGTTCCTAGTTAATTGTGTAATTAAGCTTTTGTTATTTGGTTTATAATACACTTAGAACTGCTCCTACTAAAGAGGTTCTAAAGGTTAATACTCTCTTACAGGTGAGGAGACCATAAAAGCTGAAGAAGCCAAACCCGCTGAGCCTGAGGTATGTATAAGATTGGTTTCGGCTATATTTACATTTGTTTGTTTTCTGAAGTACTATGTATGCGAAGCCATAGTTATAGATCTATAGTAATAAATTTTTAATGATGTAGAATAATAAATTCTTTTAAGTGAAAAAAGGGTATCTAACTATCTACATATTTTCTGAAGTCACTGTTTTCTAAACATCCATTAATTTCTACCCCCAAAATTTGACATTATGTTTTTGCAGCATTGA

Protein sequence

>MS.gene066779.t1

MSAEKERETQVYLAKLSEQAERYEEMVECMKKVAKLDVELTVEERNLLSVGYKNVIGARRASWRIMSSIEQKEESKGNEHNVKMIKSYCQKVEEELSKICGDILTIIDQHLVPASTSAEANVFYHKMKGDYFRYLAEFKTDQERKEAAEQSLKGYEAASATANTDLPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDLPEDGGEETIKAEEAKPAEPEH