Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74343.t1 | XP_013445246.1 | 92.9 | 156 | 11 | 0 | 1 | 156 | 1 | 156 | 1.50E-79 | 305.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74343.t1 | Q941R6 | 35.3 | 153 | 95 | 4 | 3 | 152 | 20 | 171 | 7.7e-21 | 101.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74343.t1 | I3SJ62 | 92.9 | 156 | 11 | 0 | 1 | 156 | 1 | 156 | 1.1e-79 | 305.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051718 | MS.gene74343 | 0.805252 | 1.46E-49 | -1.69E-46 |
| MS.gene053083 | MS.gene74343 | 0.803928 | 2.76E-49 | -1.69E-46 |
| MS.gene053957 | MS.gene74343 | 0.823305 | 1.49E-53 | -1.69E-46 |
| MS.gene053958 | MS.gene74343 | 0.832781 | 7.77E-56 | -1.69E-46 |
| MS.gene053961 | MS.gene74343 | 0.817156 | 3.82E-52 | -1.69E-46 |
| MS.gene058015 | MS.gene74343 | 0.811881 | 5.61E-51 | -1.69E-46 |
| MS.gene058382 | MS.gene74343 | 0.806761 | 7.03E-50 | -1.69E-46 |
| MS.gene058386 | MS.gene74343 | 0.813986 | 1.94E-51 | -1.69E-46 |
| MS.gene060076 | MS.gene74343 | 0.804096 | 2.54E-49 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74343.t1 | MTR_8g045695 | 92.949 | 156 | 11 | 0 | 1 | 156 | 1 | 156 | 1.69e-105 | 298 |
| MS.gene74343.t1 | MTR_8g045735 | 84.416 | 154 | 24 | 0 | 1 | 154 | 1 | 154 | 6.62e-97 | 276 |
| MS.gene74343.t1 | MTR_8g045665 | 83.333 | 156 | 26 | 0 | 1 | 156 | 1 | 156 | 4.32e-95 | 271 |
| MS.gene74343.t1 | MTR_8g045640 | 82.692 | 156 | 27 | 0 | 1 | 156 | 1 | 156 | 2.67e-93 | 267 |
| MS.gene74343.t1 | MTR_8g045560 | 81.410 | 156 | 29 | 0 | 1 | 156 | 1 | 156 | 5.57e-92 | 264 |
| MS.gene74343.t1 | MTR_8g045520 | 76.433 | 157 | 36 | 1 | 1 | 156 | 1 | 157 | 4.16e-85 | 246 |
| MS.gene74343.t1 | MTR_8g045400 | 75.159 | 157 | 37 | 2 | 1 | 156 | 1 | 156 | 5.11e-85 | 246 |
| MS.gene74343.t1 | MTR_8g045490 | 72.611 | 157 | 41 | 2 | 1 | 156 | 1 | 156 | 2.53e-81 | 237 |
| MS.gene74343.t1 | MTR_8g045555 | 70.395 | 152 | 44 | 1 | 1 | 151 | 1 | 152 | 7.71e-77 | 225 |
| MS.gene74343.t1 | MTR_8g045570 | 69.079 | 152 | 46 | 1 | 1 | 151 | 1 | 152 | 5.98e-76 | 223 |
| MS.gene74343.t1 | MTR_8g045300 | 66.667 | 156 | 51 | 1 | 1 | 155 | 1 | 156 | 8.14e-76 | 223 |
| MS.gene74343.t1 | MTR_1g030810 | 45.098 | 153 | 80 | 3 | 1 | 150 | 1 | 152 | 2.16e-40 | 133 |
| MS.gene74343.t1 | MTR_1g030820 | 39.869 | 153 | 88 | 3 | 1 | 150 | 1 | 152 | 1.35e-37 | 126 |
| MS.gene74343.t1 | MTR_1g030840 | 40.385 | 156 | 84 | 5 | 1 | 148 | 1 | 155 | 9.22e-31 | 109 |
| MS.gene74343.t1 | MTR_8g012550 | 32.667 | 150 | 97 | 4 | 6 | 153 | 8 | 155 | 3.37e-25 | 94.7 |
| MS.gene74343.t1 | MTR_1g031640 | 38.514 | 148 | 81 | 6 | 7 | 151 | 7 | 147 | 3.32e-23 | 89.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74343.t1 | AT1G70840 | 35.294 | 153 | 95 | 4 | 3 | 152 | 20 | 171 | 2.09e-25 | 95.9 |
| MS.gene74343.t1 | AT5G28010 | 35.294 | 153 | 95 | 4 | 3 | 152 | 15 | 166 | 2.36e-25 | 95.5 |
| MS.gene74343.t1 | AT5G28010 | 35.294 | 153 | 95 | 4 | 3 | 152 | 15 | 166 | 2.36e-25 | 95.5 |
| MS.gene74343.t1 | AT1G70830 | 36.601 | 153 | 93 | 4 | 3 | 152 | 22 | 173 | 4.24e-25 | 95.1 |
| MS.gene74343.t1 | AT1G70830 | 36.364 | 154 | 94 | 4 | 3 | 153 | 22 | 174 | 5.12e-25 | 95.5 |
| MS.gene74343.t1 | AT1G70890 | 35.948 | 153 | 94 | 4 | 3 | 152 | 7 | 158 | 1.74e-24 | 93.2 |
| MS.gene74343.t1 | AT1G70830 | 36.364 | 154 | 94 | 4 | 3 | 153 | 22 | 174 | 3.75e-24 | 94.4 |
| MS.gene74343.t1 | AT1G70830 | 36.364 | 154 | 94 | 4 | 3 | 153 | 22 | 174 | 7.83e-24 | 95.1 |
| MS.gene74343.t1 | AT1G70830 | 35.294 | 153 | 95 | 4 | 3 | 152 | 184 | 335 | 2.50e-22 | 91.3 |
| MS.gene74343.t1 | AT1G70830 | 35.294 | 153 | 95 | 4 | 3 | 152 | 137 | 288 | 7.59e-23 | 91.7 |
| MS.gene74343.t1 | AT4G23670 | 34.641 | 153 | 96 | 4 | 1 | 151 | 1 | 151 | 4.68e-22 | 86.7 |
| MS.gene74343.t1 | AT1G14930 | 31.210 | 157 | 104 | 4 | 1 | 155 | 1 | 155 | 1.68e-21 | 85.1 |
| MS.gene74343.t1 | AT1G70850 | 34.000 | 150 | 95 | 4 | 3 | 149 | 9 | 157 | 2.17e-21 | 87.0 |
| MS.gene74343.t1 | AT1G70850 | 34.000 | 150 | 95 | 4 | 3 | 149 | 9 | 157 | 5.26e-21 | 87.4 |
| MS.gene74343.t1 | AT1G70850 | 35.664 | 143 | 88 | 4 | 13 | 152 | 175 | 316 | 8.11e-21 | 86.7 |
| MS.gene74343.t1 | AT1G70850 | 34.000 | 150 | 95 | 4 | 3 | 149 | 9 | 157 | 5.26e-21 | 87.4 |
| MS.gene74343.t1 | AT1G70850 | 35.664 | 143 | 88 | 4 | 13 | 152 | 175 | 316 | 8.11e-21 | 86.7 |
| MS.gene74343.t1 | AT5G28000 | 31.373 | 153 | 101 | 4 | 3 | 152 | 13 | 164 | 6.59e-21 | 84.0 |
| MS.gene74343.t1 | AT2G01520 | 31.373 | 153 | 101 | 4 | 1 | 151 | 1 | 151 | 1.03e-20 | 83.2 |
| MS.gene74343.t1 | AT2G01530 | 32.680 | 153 | 99 | 4 | 1 | 151 | 1 | 151 | 5.87e-20 | 81.3 |
| MS.gene74343.t1 | AT1G14940 | 29.299 | 157 | 107 | 4 | 1 | 155 | 1 | 155 | 6.59e-19 | 78.6 |
| MS.gene74343.t1 | AT1G70870 | 35.484 | 155 | 78 | 5 | 1 | 150 | 1 | 138 | 2.02e-18 | 77.0 |
| MS.gene74343.t1 | AT1G14950 | 29.936 | 157 | 106 | 4 | 1 | 155 | 1 | 155 | 4.51e-18 | 76.3 |
| MS.gene74343.t1 | AT4G14060 | 30.065 | 153 | 103 | 4 | 1 | 151 | 1 | 151 | 4.93e-18 | 76.3 |
| MS.gene74343.t1 | AT4G23680 | 30.263 | 152 | 102 | 4 | 1 | 150 | 1 | 150 | 2.30e-17 | 74.3 |
| MS.gene74343.t1 | AT1G23130 | 28.188 | 149 | 104 | 3 | 3 | 149 | 10 | 157 | 2.42e-17 | 74.7 |
| MS.gene74343.t1 | AT1G70880 | 28.758 | 153 | 105 | 4 | 3 | 152 | 8 | 159 | 7.79e-17 | 73.2 |
| MS.gene74343.t1 | AT1G35260 | 29.861 | 144 | 96 | 4 | 9 | 149 | 8 | 149 | 1.22e-16 | 72.4 |
| MS.gene74343.t1 | AT1G30990 | 29.032 | 155 | 105 | 5 | 1 | 153 | 1 | 152 | 3.87e-16 | 71.2 |
| MS.gene74343.t1 | AT1G23120 | 27.333 | 150 | 101 | 5 | 3 | 149 | 1 | 145 | 1.49e-15 | 69.7 |
| MS.gene74343.t1 | AT1G14960 | 28.387 | 155 | 107 | 4 | 1 | 153 | 1 | 153 | 3.10e-15 | 68.9 |
| MS.gene74343.t1 | AT1G23120 | 26.241 | 141 | 98 | 4 | 10 | 149 | 60 | 195 | 3.28e-15 | 69.7 |
| MS.gene74343.t1 | AT3G26460 | 26.797 | 153 | 109 | 3 | 1 | 151 | 1 | 152 | 6.08e-14 | 65.5 |
| MS.gene74343.t1 | AT1G24020 | 30.968 | 155 | 98 | 4 | 1 | 150 | 1 | 151 | 8.06e-14 | 65.5 |
| MS.gene74343.t1 | AT1G24020 | 30.968 | 155 | 98 | 4 | 1 | 150 | 1 | 151 | 8.06e-14 | 65.5 |
| MS.gene74343.t1 | AT1G35310 | 28.058 | 139 | 96 | 4 | 13 | 149 | 12 | 148 | 2.40e-13 | 63.9 |
| MS.gene74343.t1 | AT3G26450 | 25.325 | 154 | 110 | 5 | 1 | 151 | 1 | 152 | 5.06e-12 | 60.5 |
| MS.gene74343.t1 | AT1G14940 | 26.115 | 157 | 96 | 4 | 1 | 155 | 1 | 139 | 7.22e-12 | 59.7 |
Find 28 sgRNAs with CRISPR-Local
Find 87 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATCACATACAAGCTATT+TGG | 0.273919 | 8.4:+55515847 | MS.gene74343:CDS |
| GTCTTTAAGCTCATCTTAGA+AGG | 0.291250 | 8.4:+55515892 | MS.gene74343:CDS |
| ATCTTCACCTTCATGAAGTT+TGG | 0.299460 | 8.4:-55514313 | None:intergenic |
| AACATTAATGAAAGAGTTCA+TGG | 0.350725 | 8.4:+55514288 | MS.gene74343:CDS |
| ATGGAAGTTCTGCTGTTAGA+TGG | 0.407851 | 8.4:+55515929 | MS.gene74343:CDS |
| GGTAAACTTATTACTGAACT+TGG | 0.415223 | 8.4:+55514204 | MS.gene74343:CDS |
| TGGAGATATTGAAAACTATA+AGG | 0.439418 | 8.4:+55515870 | MS.gene74343:CDS |
| AGGAAATCCATCCATCCATT+TGG | 0.440781 | 8.4:-55515991 | None:intergenic |
| AAACACTGGACTTATGTCAT+AGG | 0.470664 | 8.4:+55514357 | MS.gene74343:CDS |
| AAAAGCACTAGAGATATTGA+TGG | 0.477335 | 8.4:+55516018 | MS.gene74343:CDS |
| AACTTCATGAAGGTGAAGAT+TGG | 0.494334 | 8.4:+55514316 | MS.gene74343:CDS |
| TCATCTTGTCAAAGGGGAAA+AGG | 0.504175 | 8.4:+55516041 | MS.gene74343:CDS |
| AGATTGGCATCATACTGATT+CGG | 0.504369 | 8.4:+55514332 | MS.gene74343:CDS |
| TTGATGGTCATCTTGTCAAA+GGG | 0.506740 | 8.4:+55516034 | MS.gene74343:CDS |
| GAGGATATAGATACTCCAAA+TGG | 0.507800 | 8.4:+55515976 | MS.gene74343:CDS |
| ATCACATACAAGCTATTTGG+TGG | 0.530005 | 8.4:+55515850 | MS.gene74343:CDS |
| GTAAACTTATTACTGAACTT+GGG | 0.542207 | 8.4:+55514205 | MS.gene74343:CDS |
| ATTGATGGTCATCTTGTCAA+AGG | 0.543582 | 8.4:+55516033 | MS.gene74343:CDS |
| TCTTTAAGCTCATCTTAGAA+GGG | 0.545692 | 8.4:+55515893 | MS.gene74343:CDS |
| AGATACTCCAAATGGATGGA+TGG | 0.566815 | 8.4:+55515984 | MS.gene74343:CDS |
| AGTTTGTAGAACTTGTCAGC+TGG | 0.569465 | 8.4:-55514237 | None:intergenic |
| GAAGGGCTTAACAAGGCTGA+TGG | 0.584478 | 8.4:+55515910 | MS.gene74343:CDS |
| ATATAGATACTCCAAATGGA+TGG | 0.603743 | 8.4:+55515980 | MS.gene74343:CDS |
| ATACTGATTCGGTTAAACAC+TGG | 0.606046 | 8.4:+55514343 | MS.gene74343:CDS |
| CATCTTAGAAGGGCTTAACA+AGG | 0.611102 | 8.4:+55515903 | MS.gene74343:CDS |
| CATGGTGCCAAACTTCATGA+AGG | 0.632424 | 8.4:+55514306 | MS.gene74343:CDS |
| TGATGGTCATCTTGTCAAAG+GGG | 0.652198 | 8.4:+55516035 | MS.gene74343:CDS |
| TGACGTAATAACAGATGGCG+AGG | 0.668621 | 8.4:+55515777 | MS.gene74343:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATTATTCGAAAAAA+AGG | + | chr8.4:55514798-55514817 | MS.gene74343:intron | 10.0% |
| !! | CTTAATTATCAAATAAATAA+TGG | - | chr8.4:55514754-55514773 | None:intergenic | 10.0% |
| !!! | ATTTTTAAAAAAATGTGAAA+GGG | + | chr8.4:55515404-55515423 | MS.gene74343:intron | 10.0% |
| !!! | TATCTTATTATAATATTTTC+TGG | + | chr8.4:55515685-55515704 | MS.gene74343:intron | 10.0% |
| !! | AAATTCTAAATTATGTCAAT+AGG | - | chr8.4:55514585-55514604 | None:intergenic | 15.0% |
| !! | AAATTTACTATGAAATAGTA+GGG | + | chr8.4:55515080-55515099 | MS.gene74343:intron | 15.0% |
| !! | GAATAATATATATTATGAGT+GGG | - | chr8.4:55514791-55514810 | None:intergenic | 15.0% |
| !! | TAAATTTACTATGAAATAGT+AGG | + | chr8.4:55515079-55515098 | MS.gene74343:intron | 15.0% |
| !! | TATAGTAATAAAAAGAAGAT+TGG | + | chr8.4:55514471-55514490 | MS.gene74343:intron | 15.0% |
| !!! | ATCTTTAAATAGTATTTTAG+AGG | + | chr8.4:55515496-55515515 | MS.gene74343:intron | 15.0% |
| !!! | CATTTTTAAAAAAATGTGAA+AGG | + | chr8.4:55515403-55515422 | MS.gene74343:intron | 15.0% |
| !!! | GGATTTATATTTTGTTTTTT+AGG | + | chr8.4:55515320-55515339 | MS.gene74343:intron | 15.0% |
| !!! | GTTTTCTATTACAAATTTTT+TGG | + | chr8.4:55514440-55514459 | MS.gene74343:intron | 15.0% |
| !! | CGAATAATATATATTATGAG+TGG | - | chr8.4:55514792-55514811 | None:intergenic | 20.0% |
| !!! | CAATAAAATACGTTTTTCAA+AGG | - | chr8.4:55515737-55515756 | None:intergenic | 20.0% |
| !!! | CCTTAAAGTTTTTAGTAAAA+CGG | + | chr8.4:55515011-55515030 | MS.gene74343:intron | 20.0% |
| !!! | GTATAATTTTTTCTTTACGA+TGG | + | chr8.4:55514905-55514924 | MS.gene74343:intron | 20.0% |
| !!! | TATGTATTTGATTTATGCTT+AGG | + | chr8.4:55515110-55515129 | MS.gene74343:intron | 20.0% |
| !!! | TTTTGTTTTTTAGGATACAA+AGG | + | chr8.4:55515329-55515348 | MS.gene74343:intron | 20.0% |
| ! | AAAAAATTATACTCGTACCA+AGG | - | chr8.4:55514897-55514916 | None:intergenic | 25.0% |
| ! | AAAATCACATACAAGCTATT+TGG | + | chr8.4:55515847-55515866 | MS.gene74343:CDS | 25.0% |
| ! | AACAATGCATAATATATGCA+AGG | + | chr8.4:55515560-55515579 | MS.gene74343:intron | 25.0% |
| ! | AACATTAATGAAAGAGTTCA+TGG | + | chr8.4:55514288-55514307 | MS.gene74343:CDS | 25.0% |
| ! | AGTATCATTTGTTTCCTTTA+AGG | - | chr8.4:55514856-55514875 | None:intergenic | 25.0% |
| ! | GTAAACTTATTACTGAACTT+GGG | + | chr8.4:55514205-55514224 | MS.gene74343:CDS | 25.0% |
| ! | TGATTATGAGAAGAAAAATG+AGG | + | chr8.4:55515957-55515976 | MS.gene74343:CDS | 25.0% |
| ! | TGGAGATATTGAAAACTATA+AGG | + | chr8.4:55515870-55515889 | MS.gene74343:CDS | 25.0% |
| ! | TTATCTCTAGACAAAAAATC+TGG | - | chr8.4:55514942-55514961 | None:intergenic | 25.0% |
| ! | TTGTCTAGAGATAAAAAGTA+GGG | + | chr8.4:55514948-55514967 | MS.gene74343:intron | 25.0% |
| ! | TTTGTCTAGAGATAAAAAGT+AGG | + | chr8.4:55514947-55514966 | MS.gene74343:intron | 25.0% |
| !! | CCGTTTTACTAAAAACTTTA+AGG | - | chr8.4:55515014-55515033 | None:intergenic | 25.0% |
| !! | TCATTTTACAACAGTAATGT+GGG | + | chr8.4:55515299-55515318 | MS.gene74343:intron | 25.0% |
| !!! | GTGCTTTATTTAAAGATCTA+AGG | - | chr8.4:55515441-55515460 | None:intergenic | 25.0% |
| AAAGCAACAAATGACCTTAA+AGG | + | chr8.4:55514839-55514858 | MS.gene74343:intron | 30.0% | |
| AAATGATACTCAACCATCTT+TGG | + | chr8.4:55514866-55514885 | MS.gene74343:intron | 30.0% | |
| AGCCATGAAATTACAAATCA+TGG | - | chr8.4:55515186-55515205 | None:intergenic | 30.0% | |
| ATATAGATACTCCAAATGGA+TGG | + | chr8.4:55515980-55515999 | MS.gene74343:CDS | 30.0% | |
| GGTAAACTTATTACTGAACT+TGG | + | chr8.4:55514204-55514223 | MS.gene74343:CDS | 30.0% | |
| GTTTGTATGATATGATCCTT+CGG | + | chr8.4:55514970-55514989 | MS.gene74343:intron | 30.0% | |
| TAATTTCATGGCTCTTTCTT+GGG | + | chr8.4:55515193-55515212 | MS.gene74343:intron | 30.0% | |
| TCTTCGTTATAGATCTCATT+TGG | - | chr8.4:55514511-55514530 | None:intergenic | 30.0% | |
| TCTTTAAGCTCATCTTAGAA+GGG | + | chr8.4:55515893-55515912 | MS.gene74343:CDS | 30.0% | |
| ! | TGCCATGATTTGTAATTTCA+TGG | + | chr8.4:55515181-55515200 | MS.gene74343:intron | 30.0% |
| !! | AAAAGCACTAGAGATATTGA+TGG | + | chr8.4:55516018-55516037 | MS.gene74343:CDS | 30.0% |
| !! | GTCATTTTACAACAGTAATG+TGG | + | chr8.4:55515298-55515317 | MS.gene74343:intron | 30.0% |
| !!! | GAATGTCTCTTTCTTTTTTG+TGG | - | chr8.4:55515607-55515626 | None:intergenic | 30.0% |
| AAACACTGGACTTATGTCAT+AGG | + | chr8.4:55514357-55514376 | MS.gene74343:CDS | 35.0% | |
| AACTTCATGAAGGTGAAGAT+TGG | + | chr8.4:55514316-55514335 | MS.gene74343:CDS | 35.0% | |
| ATCACATACAAGCTATTTGG+TGG | + | chr8.4:55515850-55515869 | MS.gene74343:CDS | 35.0% | |
| ATCTTCACCTTCATGAAGTT+TGG | - | chr8.4:55514316-55514335 | None:intergenic | 35.0% | |
| GAGGATATAGATACTCCAAA+TGG | + | chr8.4:55515976-55515995 | MS.gene74343:CDS | 35.0% | |
| GTAATTTCATGGCTCTTTCT+TGG | + | chr8.4:55515192-55515211 | MS.gene74343:intron | 35.0% | |
| GTCTTTAAGCTCATCTTAGA+AGG | + | chr8.4:55515892-55515911 | MS.gene74343:CDS | 35.0% | |
| TGATTTATGCTTAGGTGTTC+AGG | + | chr8.4:55515118-55515137 | MS.gene74343:intron | 35.0% | |
| ! | AGATTGGCATCATACTGATT+CGG | + | chr8.4:55514332-55514351 | MS.gene74343:CDS | 35.0% |
| ! | ATTGATGGTCATCTTGTCAA+AGG | + | chr8.4:55516033-55516052 | MS.gene74343:CDS | 35.0% |
| ! | TATCTCTAGTGCTTTTGCTA+AGG | - | chr8.4:55516014-55516033 | None:intergenic | 35.0% |
| ! | TTGATGGTCATCTTGTCAAA+GGG | + | chr8.4:55516034-55516053 | MS.gene74343:CDS | 35.0% |
| !! | ATACTGATTCGGTTAAACAC+TGG | + | chr8.4:55514343-55514362 | MS.gene74343:CDS | 35.0% |
| !!! | TGTCTCTTTCTTTTTTGTGG+TGG | - | chr8.4:55515604-55515623 | None:intergenic | 35.0% |
| AACCATCTTTGGATTCACCT+TGG | + | chr8.4:55514877-55514896 | MS.gene74343:intron | 40.0% | |
| AGATACTCCAAATGGATGGA+TGG | + | chr8.4:55515984-55516003 | MS.gene74343:CDS | 40.0% | |
| AGGAAATCCATCCATCCATT+TGG | - | chr8.4:55515994-55516013 | None:intergenic | 40.0% | |
| AGTTTGTAGAACTTGTCAGC+TGG | - | chr8.4:55514240-55514259 | None:intergenic | 40.0% | |
| ATGGAAGTTCTGCTGTTAGA+TGG | + | chr8.4:55515929-55515948 | MS.gene74343:CDS | 40.0% | |
| CAAGGTTCAGATTCAAATCC+CGG | + | chr8.4:55515578-55515597 | MS.gene74343:intron | 40.0% | |
| CATCTTAGAAGGGCTTAACA+AGG | + | chr8.4:55515903-55515922 | MS.gene74343:CDS | 40.0% | |
| CGAGACTGATCTAACAATGA+AGG | + | chr8.4:55514548-55514567 | MS.gene74343:intron | 40.0% | |
| TACCAAGGTGAATCCAAAGA+TGG | - | chr8.4:55514882-55514901 | None:intergenic | 40.0% | |
| TATCGAAATCATTGCACACG+AGG | + | chr8.4:55514689-55514708 | MS.gene74343:intron | 40.0% | |
| TCATCTTGTCAAAGGGGAAA+AGG | + | chr8.4:55516041-55516060 | MS.gene74343:CDS | 40.0% | |
| TGATGGTCATCTTGTCAAAG+GGG | + | chr8.4:55516035-55516054 | MS.gene74343:CDS | 40.0% | |
| ! | CGTCTTTAGACATTTTCCGA+AGG | - | chr8.4:55514989-55515008 | None:intergenic | 40.0% |
| !!! | TCTTTCTTTTTTGTGGTGGC+CGG | - | chr8.4:55515600-55515619 | None:intergenic | 40.0% |
| CTTGGGTGCAATGTATGCTT+GGG | + | chr8.4:55515210-55515229 | MS.gene74343:intron | 45.0% | |
| GCCATCTGTTATTACGTCAG+AGG | - | chr8.4:55515776-55515795 | None:intergenic | 45.0% | |
| GCCTCTGACGTAATAACAGA+TGG | + | chr8.4:55515772-55515791 | MS.gene74343:intron | 45.0% | |
| TCTTGGGTGCAATGTATGCT+TGG | + | chr8.4:55515209-55515228 | MS.gene74343:intron | 45.0% | |
| TGACGTAATAACAGATGGCG+AGG | + | chr8.4:55515777-55515796 | MS.gene74343:intron | 45.0% | |
| ! | CATGGTGCCAAACTTCATGA+AGG | + | chr8.4:55514306-55514325 | MS.gene74343:CDS | 45.0% |
| !!! | CTTTCTTTTTTGTGGTGGCC+GGG | - | chr8.4:55515599-55515618 | None:intergenic | 45.0% |
| !! | TAATAAGATAATAATAATAA+AGG | - | chr8.4:55515675-55515694 | None:intergenic | 5.0% |
| !!! | AATTTAGAATTTTTTTTAAT+TGG | + | chr8.4:55514593-55514612 | MS.gene74343:intron | 5.0% |
| !!! | CTATTATTATTTTATTTTTT+TGG | - | chr8.4:55515267-55515286 | None:intergenic | 5.0% |
| !!! | TATTATATATTTTTTTAATG+CGG | + | chr8.4:55515638-55515657 | MS.gene74343:intron | 5.0% |
| CTTCGTGTGCTTAGCTCAGT+TGG | + | chr8.4:55515533-55515552 | MS.gene74343:intron | 50.0% | |
| GAAGGGCTTAACAAGGCTGA+TGG | + | chr8.4:55515910-55515929 | MS.gene74343:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 55514192 | 55516074 | 55514192 | ID=MS.gene74343 |
| chr8.4 | mRNA | 55514192 | 55516074 | 55514192 | ID=MS.gene74343.t1;Parent=MS.gene74343 |
| chr8.4 | exon | 55514192 | 55514378 | 55514192 | ID=MS.gene74343.t1.exon1;Parent=MS.gene74343.t1 |
| chr8.4 | CDS | 55514192 | 55514378 | 55514192 | ID=cds.MS.gene74343.t1;Parent=MS.gene74343.t1 |
| chr8.4 | exon | 55515791 | 55516074 | 55515791 | ID=MS.gene74343.t1.exon2;Parent=MS.gene74343.t1 |
| chr8.4 | CDS | 55515791 | 55516074 | 55515791 | ID=cds.MS.gene74343.t1;Parent=MS.gene74343.t1 |
| Gene Sequence |
| Protein sequence |
