Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054441.t1 | XP_013450482.1 | 95.1 | 308 | 15 | 0 | 1 | 308 | 1 | 308 | 5.50E-171 | 610.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054441.t1 | I6YGS0 | 40.1 | 312 | 167 | 8 | 7 | 308 | 7 | 308 | 3.2e-58 | 226.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054441.t1 | A0A072UFD9 | 95.1 | 308 | 15 | 0 | 1 | 308 | 1 | 308 | 4.0e-171 | 610.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054441 | MS.gene054442 | 0.982873 | 3.16E-156 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene77823 | MS.gene054441 | PPI |
| MS.gene054441 | MS.gene035371 | PPI |
| MS.gene071504 | MS.gene054441 | PPI |
| MS.gene012063 | MS.gene054441 | PPI |
| MS.gene054441 | MS.gene07001 | PPI |
| MS.gene071502 | MS.gene054441 | PPI |
| MS.gene066360 | MS.gene054441 | PPI |
| MS.gene89620 | MS.gene054441 | PPI |
| MS.gene054441 | MS.gene066361 | PPI |
| MS.gene035369 | MS.gene054441 | PPI |
| MS.gene054441 | MS.gene071500 | PPI |
| MS.gene054441 | MS.gene041604 | PPI |
| MS.gene76453 | MS.gene054441 | PPI |
| MS.gene025707 | MS.gene054441 | PPI |
| MS.gene035373 | MS.gene054441 | PPI |
| MS.gene054441 | MS.gene22955 | PPI |
| MS.gene035367 | MS.gene054441 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054441.t1 | MTR_7g112963 | 95.130 | 308 | 15 | 0 | 1 | 308 | 1 | 308 | 0.0 | 606 |
| MS.gene054441.t1 | MTR_7g112960 | 89.935 | 308 | 31 | 0 | 1 | 308 | 1 | 308 | 0.0 | 580 |
| MS.gene054441.t1 | MTR_7g112970 | 88.312 | 308 | 33 | 1 | 1 | 308 | 1 | 305 | 0.0 | 562 |
| MS.gene054441.t1 | MTR_7g113010 | 85.765 | 281 | 40 | 0 | 1 | 281 | 1 | 281 | 0.0 | 518 |
| MS.gene054441.t1 | MTR_7g113020 | 78.896 | 308 | 65 | 0 | 1 | 308 | 1 | 308 | 0.0 | 510 |
| MS.gene054441.t1 | MTR_7g113050 | 77.419 | 310 | 66 | 2 | 1 | 308 | 1 | 308 | 2.19e-179 | 498 |
| MS.gene054441.t1 | MTR_7g113030 | 76.299 | 308 | 73 | 0 | 1 | 308 | 1 | 308 | 2.34e-179 | 498 |
| MS.gene054441.t1 | MTR_7g112620 | 76.623 | 308 | 72 | 0 | 1 | 308 | 1 | 308 | 3.79e-179 | 497 |
| MS.gene054441.t1 | MTR_7g112615 | 75.974 | 308 | 74 | 0 | 1 | 308 | 1 | 308 | 3.86e-177 | 492 |
| MS.gene054441.t1 | MTR_4g005160 | 66.242 | 314 | 97 | 5 | 1 | 308 | 1 | 311 | 2.16e-152 | 429 |
| MS.gene054441.t1 | MTR_4g120240 | 62.581 | 310 | 112 | 3 | 1 | 308 | 37 | 344 | 2.50e-142 | 405 |
| MS.gene054441.t1 | MTR_7g108825 | 60.841 | 309 | 117 | 3 | 1 | 308 | 1 | 306 | 1.50e-135 | 387 |
| MS.gene054441.t1 | MTR_7g113050 | 77.083 | 240 | 51 | 2 | 1 | 238 | 1 | 238 | 7.58e-135 | 382 |
| MS.gene054441.t1 | MTR_7g112615 | 75.630 | 238 | 58 | 0 | 1 | 238 | 1 | 238 | 6.69e-134 | 379 |
| MS.gene054441.t1 | MTR_8g076680 | 47.619 | 315 | 151 | 5 | 1 | 308 | 3 | 310 | 3.74e-104 | 307 |
| MS.gene054441.t1 | MTR_7g112615 | 82.286 | 175 | 28 | 1 | 1 | 172 | 1 | 175 | 4.87e-103 | 299 |
| MS.gene054441.t1 | MTR_7g108825 | 59.833 | 239 | 92 | 3 | 1 | 238 | 1 | 236 | 4.06e-99 | 291 |
| MS.gene054441.t1 | MTR_1g083480 | 76.101 | 159 | 34 | 2 | 1 | 156 | 1 | 158 | 3.47e-87 | 259 |
| MS.gene054441.t1 | MTR_8g076680 | 47.521 | 242 | 117 | 3 | 1 | 238 | 3 | 238 | 4.75e-82 | 248 |
| MS.gene054441.t1 | MTR_4g089060 | 36.013 | 311 | 184 | 6 | 1 | 308 | 1 | 299 | 1.06e-63 | 204 |
| MS.gene054441.t1 | MTR_7g112910 | 48.750 | 240 | 64 | 7 | 72 | 308 | 1 | 184 | 4.74e-63 | 198 |
| MS.gene054441.t1 | MTR_2g090240 | 35.370 | 311 | 187 | 6 | 1 | 308 | 1 | 300 | 2.03e-62 | 200 |
| MS.gene054441.t1 | MTR_4g089040 | 35.370 | 311 | 186 | 6 | 1 | 308 | 1 | 299 | 1.82e-61 | 198 |
| MS.gene054441.t1 | MTR_2g090245 | 35.370 | 311 | 187 | 7 | 1 | 308 | 1 | 300 | 3.19e-61 | 197 |
| MS.gene054441.t1 | MTR_4g089060 | 33.432 | 338 | 183 | 7 | 1 | 308 | 1 | 326 | 1.38e-58 | 191 |
| MS.gene054441.t1 | MTR_3g024250 | 82.075 | 106 | 19 | 0 | 47 | 152 | 2 | 107 | 1.79e-57 | 182 |
| MS.gene054441.t1 | MTR_4g089060 | 37.768 | 233 | 136 | 3 | 1 | 231 | 1 | 226 | 4.41e-55 | 179 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054441.t1 | AT3G05600 | 63.694 | 314 | 107 | 4 | 1 | 308 | 1 | 313 | 1.18e-149 | 423 |
| MS.gene054441.t1 | AT4G02340 | 60.194 | 309 | 118 | 3 | 1 | 308 | 1 | 305 | 1.77e-139 | 397 |
| MS.gene054441.t1 | AT2G26740 | 60.450 | 311 | 116 | 4 | 4 | 308 | 1 | 310 | 1.17e-123 | 357 |
| MS.gene054441.t1 | AT4G15960 | 53.822 | 314 | 138 | 3 | 1 | 308 | 51 | 363 | 9.30e-123 | 357 |
| MS.gene054441.t1 | AT2G26750 | 58.710 | 310 | 122 | 4 | 4 | 308 | 1 | 309 | 1.11e-119 | 347 |
| MS.gene054441.t1 | AT3G05600 | 65.164 | 244 | 78 | 4 | 1 | 238 | 1 | 243 | 7.64e-115 | 332 |
| MS.gene054441.t1 | AT4G15955 | 51.911 | 314 | 115 | 5 | 5 | 308 | 6 | 293 | 3.12e-108 | 317 |
| MS.gene054441.t1 | AT3G51000 | 49.196 | 311 | 145 | 8 | 4 | 308 | 5 | 308 | 1.36e-103 | 306 |
| MS.gene054441.t1 | AT4G15955 | 60.345 | 174 | 59 | 2 | 4 | 167 | 5 | 178 | 3.52e-73 | 223 |
| MS.gene054441.t1 | AT4G15955 | 58.046 | 174 | 63 | 2 | 4 | 167 | 5 | 178 | 3.38e-69 | 213 |
Find 89 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATAGGCTTTGATTCTTTC+AGG | 0.119767 | 7.4:-3940171 | None:intergenic |
| CAAGAAAGATGTGCCAAATT+TGG | 0.205231 | 7.4:+3942006 | MS.gene054441:CDS |
| ATAACCACTTCCTCCAAATT+TGG | 0.220764 | 7.4:-3942019 | None:intergenic |
| CCATCAACAGGTTTCACTTT+TGG | 0.231114 | 7.4:-3940225 | None:intergenic |
| TGATTTCCTCGGCAGCTTCT+TGG | 0.237229 | 7.4:-3942069 | None:intergenic |
| ATGAGATAATATGCCTTCTT+TGG | 0.258836 | 7.4:-3941145 | None:intergenic |
| GATTTAGTTTACACTTCTTT+TGG | 0.261386 | 7.4:+3941953 | MS.gene054441:CDS |
| CGCCACCAGATTGCTGCTCT+TGG | 0.265149 | 7.4:+3939949 | MS.gene054441:CDS |
| GTGACAGGAACCCGGGAAAA+TGG | 0.290473 | 7.4:+3941041 | MS.gene054441:intron |
| GTACAATGCCCCTCCCTTCT+TGG | 0.292567 | 7.4:+3941181 | MS.gene054441:CDS |
| CTTCCTTGTAGCTCATGATT+GGG | 0.316992 | 7.4:+3940113 | MS.gene054441:CDS |
| GAAGATTGTGTAACTACTAA+TGG | 0.366861 | 7.4:-3940037 | None:intergenic |
| TCTTCCTTGTAGCTCATGAT+TGG | 0.373039 | 7.4:+3940112 | MS.gene054441:CDS |
| CGCCAAGAGTACCAGAGTTC+AGG | 0.381681 | 7.4:-3939928 | None:intergenic |
| CCAAAAGTGAAACCTGTTGA+TGG | 0.389532 | 7.4:+3940225 | MS.gene054441:CDS |
| TCGCCGTAACCACGGAGATC+TGG | 0.394426 | 7.4:-3939997 | None:intergenic |
| TTTGAAAAGACAGGATTTAG+TGG | 0.395852 | 7.4:+3941240 | MS.gene054441:CDS |
| TTTGGATTTCTGGGTAAATA+CGG | 0.407798 | 7.4:-3940207 | None:intergenic |
| ACCGCTCTCGATGTATTGTT+TGG | 0.413172 | 7.4:-3941978 | None:intergenic |
| TTATTATATCTGCAGATTCC+AGG | 0.414957 | 7.4:+3940272 | MS.gene054441:CDS |
| GCTTCCAAATTTGAAAAGAC+AGG | 0.423519 | 7.4:+3941231 | MS.gene054441:CDS |
| GAAGTTCATCATAGGTGATC+TGG | 0.427789 | 7.4:+3941931 | MS.gene054441:CDS |
| CATAGGCTTTGATTCTTTCA+GGG | 0.432762 | 7.4:-3940170 | None:intergenic |
| TTCCTGAACTCTGGTACTCT+TGG | 0.435109 | 7.4:+3939926 | MS.gene054441:CDS |
| CATGATTGGGGTGCCATCAT+TGG | 0.436037 | 7.4:+3940126 | MS.gene054441:CDS |
| CCTTCTTTGGACAGGATTGG+TGG | 0.444630 | 7.4:-3941132 | None:intergenic |
| GCTCCAGATCTCCGTGGTTA+CGG | 0.448429 | 7.4:+3939994 | MS.gene054441:CDS |
| TAGTTACACAATCTTCCATT+TGG | 0.454984 | 7.4:+3940044 | MS.gene054441:CDS |
| ATGCTTACAAGTCGTAATCC+TGG | 0.458065 | 7.4:+3941108 | MS.gene054441:CDS |
| ATAATATGCCTTCTTTGGAC+AGG | 0.459599 | 7.4:-3941140 | None:intergenic |
| GGGAGCCAAGAGCAGCAATC+TGG | 0.464162 | 7.4:-3939954 | None:intergenic |
| ACAGCACGCATTCCATCAAC+AGG | 0.466950 | 7.4:-3940237 | None:intergenic |
| ATTGCTGCTCTTGGCTCCCT+CGG | 0.472828 | 7.4:+3939958 | MS.gene054441:CDS |
| ATGCCTTCTTTGGACAGGAT+TGG | 0.476879 | 7.4:-3941135 | None:intergenic |
| GAGCTCACGGCAGCATGGAC+CGG | 0.477692 | 7.4:+3941887 | MS.gene054441:CDS |
| GTACCAGTGAAGTTCATCAT+AGG | 0.483596 | 7.4:+3941923 | MS.gene054441:CDS |
| AAAATGCATATTGCTGAGAA+AGG | 0.485302 | 7.4:+3939868 | MS.gene054441:CDS |
| GATGGAATGCGTGCTGTGTA+TGG | 0.487041 | 7.4:+3940243 | MS.gene054441:CDS |
| CAACGATGTCACCCACCAAA+TGG | 0.489958 | 7.4:-3940059 | None:intergenic |
| TGTGCCAAATTTGGAGGAAG+TGG | 0.500333 | 7.4:+3942015 | MS.gene054441:CDS |
| TTCACGGCTTTCCTGAACTC+TGG | 0.502205 | 7.4:+3939917 | MS.gene054441:CDS |
| TTGGACAGGATTGGTGGCCC+AGG | 0.507255 | 7.4:-3941126 | None:intergenic |
| ATGGCCTTGATCAACAGTTC+TGG | 0.508152 | 7.4:-3941087 | None:intergenic |
| TCTTCTTGTGAGAGCCAAGA+AGG | 0.512333 | 7.4:-3941195 | None:intergenic |
| CCGTGAAGGAACAAAACAAC+AGG | 0.513488 | 7.4:-3939901 | None:intergenic |
| TGCTTACAAGTCGTAATCCT+GGG | 0.514561 | 7.4:+3941109 | MS.gene054441:CDS |
| CACAGAACAGTGGAAGTGAA+TGG | 0.515742 | 7.4:+3939841 | MS.gene054441:CDS |
| CAATCCATGTGACAGGAACC+CGG | 0.522947 | 7.4:+3941033 | MS.gene054441:intron |
| TGGTACTTTAATTTGTGCTC+CGG | 0.523809 | 7.4:-3941906 | None:intergenic |
| TACACAATCTTCCATTTGGT+GGG | 0.524970 | 7.4:+3940048 | MS.gene054441:CDS |
| CCACCAATCCTGTCCAAAGA+AGG | 0.525317 | 7.4:+3941132 | MS.gene054441:CDS |
| GAAAGATGTGCCAAATTTGG+AGG | 0.528499 | 7.4:+3942009 | MS.gene054441:CDS |
| GTGTAACTACTAATGGAAGC+TGG | 0.533389 | 7.4:-3940030 | None:intergenic |
| ACAAAGATACCAACCAATGA+TGG | 0.536291 | 7.4:-3940139 | None:intergenic |
| CACCCCAATCATGAGCTACA+AGG | 0.540560 | 7.4:-3940116 | None:intergenic |
| TTCCTTGTAGCTCATGATTG+GGG | 0.541290 | 7.4:+3940114 | MS.gene054441:CDS |
| TTACACAATCTTCCATTTGG+TGG | 0.541545 | 7.4:+3940047 | MS.gene054441:CDS |
| GGGCATTGTACTTGAAACGC+TGG | 0.542022 | 7.4:-3941169 | None:intergenic |
| ATTGCTGAGAAAGGAAAAGA+AGG | 0.548522 | 7.4:+3939877 | MS.gene054441:CDS |
| GAGGAAGTGGTTATACAGAA+AGG | 0.551271 | 7.4:+3942028 | MS.gene054441:CDS |
| AATCCATGTGACAGGAACCC+GGG | 0.551511 | 7.4:+3941034 | MS.gene054441:intron |
| GTTGCTCTCATCGACTCACT+TGG | 0.552314 | 7.4:+3940078 | MS.gene054441:CDS |
| TCACCTATGATGAACTTCAC+TGG | 0.553123 | 7.4:-3941926 | None:intergenic |
| TTGTGAGAGCCAAGAAGGGA+GGG | 0.554852 | 7.4:-3941190 | None:intergenic |
| ATGGAAGCTGAAATTGCTAA+AGG | 0.559276 | 7.4:+3941060 | MS.gene054441:CDS |
| TAGTCCAGAACTGTTGATCA+AGG | 0.560762 | 7.4:+3941083 | MS.gene054441:CDS |
| CGGAACACTGAGACAAACAT+AGG | 0.567344 | 7.4:-3940187 | None:intergenic |
| ATTGGGGTGCCATCATTGGT+TGG | 0.574625 | 7.4:+3940130 | MS.gene054441:CDS |
| AGCCAAGAGCAGCAATCTGG+TGG | 0.583237 | 7.4:-3939951 | None:intergenic |
| AATGTGATTACTGATTTCCT+CGG | 0.590060 | 7.4:-3942080 | None:intergenic |
| TGTGAGAGCCAAGAAGGGAG+GGG | 0.590664 | 7.4:-3941189 | None:intergenic |
| GGCATTGTACTTGAAACGCT+GGG | 0.594338 | 7.4:-3941168 | None:intergenic |
| ACTAATGGAAGCTGGAGCAT+CGG | 0.595210 | 7.4:-3940022 | None:intergenic |
| CATCGGTGTCGCCGTAACCA+CGG | 0.597704 | 7.4:-3940005 | None:intergenic |
| CTTGTGAGAGCCAAGAAGGG+AGG | 0.599078 | 7.4:-3941191 | None:intergenic |
| ATTGGGAGCTCACGGCAGCA+TGG | 0.611461 | 7.4:+3941882 | MS.gene054441:CDS |
| GAAAAGACAGGATTTAGTGG+TGG | 0.611798 | 7.4:+3941243 | MS.gene054441:CDS |
| TAACAGAAATTGGGAGCTCA+CGG | 0.614147 | 7.4:+3941874 | MS.gene054441:intron |
| CAACAACCAAGAAGCTGCCG+AGG | 0.622555 | 7.4:+3942063 | MS.gene054441:CDS |
| CTTCTTGTGAGAGCCAAGAA+GGG | 0.624050 | 7.4:-3941194 | None:intergenic |
| AGAGTTCAGGAAAGCCGTGA+AGG | 0.628117 | 7.4:-3939915 | None:intergenic |
| AGGATTACGACTTGTAAGCA+TGG | 0.633672 | 7.4:-3941106 | None:intergenic |
| GAGCAACAGCACAGTAACCG+AGG | 0.650868 | 7.4:-3939975 | None:intergenic |
| AAACAATACATCGAGAGCGG+TGG | 0.675908 | 7.4:+3941980 | MS.gene054441:CDS |
| AGGAATAGAACACAGAACAG+TGG | 0.676997 | 7.4:+3939831 | MS.gene054441:CDS |
| AGCAACAGCACAGTAACCGA+GGG | 0.678247 | 7.4:-3939974 | None:intergenic |
| AGTGGTTATACAGAAAGGTG+TGG | 0.683843 | 7.4:+3942033 | MS.gene054441:CDS |
| ACCAAACAATACATCGAGAG+CGG | 0.693164 | 7.4:+3941977 | MS.gene054441:CDS |
| GCTGTTGCTCCAGATCTCCG+TGG | 0.735697 | 7.4:+3939988 | MS.gene054441:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATATATCAATTCTTAAAA+TGG | - | chr7.4:3940696-3940715 | None:intergenic | 10.0% |
| !! | AATTAAATCCTAAATTCATT+TGG | + | chr7.4:3940755-3940774 | MS.gene054441:intron | 15.0% |
| !!! | TTAGGATTTAATTTTATGTA+CGG | - | chr7.4:3940748-3940767 | None:intergenic | 15.0% |
| !!! | TTTTGAACTTGATAAATAAA+TGG | + | chr7.4:3940802-3940821 | MS.gene054441:intron | 15.0% |
| !! | AAATCAATAAGCTCAAATTA+CGG | - | chr7.4:3940503-3940522 | None:intergenic | 20.0% |
| !! | ATGAGTTTAATCTAAACTTT+AGG | + | chr7.4:3940779-3940798 | MS.gene054441:intron | 20.0% |
| !! | TATAAATTACAAGAGAATGA+TGG | - | chr7.4:3941355-3941374 | None:intergenic | 20.0% |
| !! | TTATAATAATTGCTGAGATA+AGG | + | chr7.4:3941597-3941616 | MS.gene054441:intron | 20.0% |
| !!! | AGACATTTTAAGTTTTTCTT+TGG | - | chr7.4:3940560-3940579 | None:intergenic | 20.0% |
| !!! | GTTATACACTAACTAAATTT+TGG | - | chr7.4:3940866-3940885 | None:intergenic | 20.0% |
| !!! | GTTTTATGTTAACAGAAATT+GGG | + | chr7.4:3941865-3941884 | MS.gene054441:intron | 20.0% |
| !!! | TGTTTTATGTTAACAGAAAT+TGG | + | chr7.4:3941864-3941883 | MS.gene054441:intron | 20.0% |
| !!! | TTAACATAAAACAAAAGCAT+TGG | - | chr7.4:3941857-3941876 | None:intergenic | 20.0% |
| !!! | TTTTAAAATCAAGGATTAAG+AGG | - | chr7.4:3941555-3941574 | None:intergenic | 20.0% |
| ! | AAAAATGAAAAATACGAACC+TGG | - | chr7.4:3940293-3940312 | None:intergenic | 25.0% |
| ! | AACTCATACCAAATGAATTT+AGG | - | chr7.4:3940766-3940785 | None:intergenic | 25.0% |
| ! | ACAATCTTAAATTTGATGGA+AGG | + | chr7.4:3941775-3941794 | MS.gene054441:intron | 25.0% |
| ! | ATTGGATTACAAATTTGACA+AGG | - | chr7.4:3940842-3940861 | None:intergenic | 25.0% |
| ! | ATTTATACAAAACCAATCCA+AGG | + | chr7.4:3941368-3941387 | MS.gene054441:intron | 25.0% |
| ! | CAAAAACCAAAAGATAAAGT+GGG | - | chr7.4:3940480-3940499 | None:intergenic | 25.0% |
| ! | GATTAATTCTACTTGAACTA+TGG | + | chr7.4:3940344-3940363 | MS.gene054441:intron | 25.0% |
| ! | TCTGACAATCTTAAATTTGA+TGG | + | chr7.4:3941771-3941790 | MS.gene054441:intron | 25.0% |
| ! | TGGTTCAACAAATATCTATA+TGG | - | chr7.4:3940676-3940695 | None:intergenic | 25.0% |
| !! | AAATCCTGTCTTTTCAAATT+TGG | - | chr7.4:3941238-3941257 | None:intergenic | 25.0% |
| !!! | AAGTTTTAGTTTTTTGCTTG+TGG | + | chr7.4:3940396-3940415 | MS.gene054441:intron | 25.0% |
| !!! | CACTAACTAAATTTTGGTAT+TGG | - | chr7.4:3940860-3940879 | None:intergenic | 25.0% |
| !!! | GATTTAGTTTACACTTCTTT+TGG | + | chr7.4:3941953-3941972 | MS.gene054441:CDS | 25.0% |
| !!! | TGAGCTTATTGATTTTAAAG+TGG | + | chr7.4:3940508-3940527 | MS.gene054441:intron | 25.0% |
| AAAATGCATATTGCTGAGAA+AGG | + | chr7.4:3939868-3939887 | MS.gene054441:CDS | 30.0% | |
| ATGAGATAATATGCCTTCTT+TGG | - | chr7.4:3941148-3941167 | None:intergenic | 30.0% | |
| CTTGATAAATAAATGGAGAC+TGG | + | chr7.4:3940809-3940828 | MS.gene054441:intron | 30.0% | |
| GAAGATTGTGTAACTACTAA+TGG | - | chr7.4:3940040-3940059 | None:intergenic | 30.0% | |
| GCAAAAACCAAAAGATAAAG+TGG | - | chr7.4:3940481-3940500 | None:intergenic | 30.0% | |
| TAGTTACACAATCTTCCATT+TGG | + | chr7.4:3940044-3940063 | MS.gene054441:CDS | 30.0% | |
| TTATATCATGAGTGATGTGT+AGG | - | chr7.4:3941657-3941676 | None:intergenic | 30.0% | |
| TTATTATATCTGCAGATTCC+AGG | + | chr7.4:3940272-3940291 | MS.gene054441:CDS | 30.0% | |
| TTTGAAAAGACAGGATTTAG+TGG | + | chr7.4:3941240-3941259 | MS.gene054441:CDS | 30.0% | |
| ! | AGATTGTCAGATGATTTTGA+AGG | - | chr7.4:3941762-3941781 | None:intergenic | 30.0% |
| ! | CGTCTAGTTAATTTGGAAAA+AGG | - | chr7.4:3941324-3941343 | None:intergenic | 30.0% |
| ! | TATTCACCCACTTTATCTTT+TGG | + | chr7.4:3940471-3940490 | MS.gene054441:intron | 30.0% |
| ! | TTTGGATTTCTGGGTAAATA+CGG | - | chr7.4:3940210-3940229 | None:intergenic | 30.0% |
| !!! | GTTTTTTGCTTGTGGTATAA+TGG | + | chr7.4:3940404-3940423 | MS.gene054441:intron | 30.0% |
| AATTATGCAACGCCAACTTA+AGG | - | chr7.4:3941484-3941503 | None:intergenic | 35.0% | |
| ACAAAGATACCAACCAATGA+TGG | - | chr7.4:3940142-3940161 | None:intergenic | 35.0% | |
| ATAACCACTTCCTCCAAATT+TGG | - | chr7.4:3942022-3942041 | None:intergenic | 35.0% | |
| ATAATATGCCTTCTTTGGAC+AGG | - | chr7.4:3941143-3941162 | None:intergenic | 35.0% | |
| ATGGAAGCTGAAATTGCTAA+AGG | + | chr7.4:3941060-3941079 | MS.gene054441:CDS | 35.0% | |
| ATTATGCAACGCCAACTTAA+GGG | - | chr7.4:3941483-3941502 | None:intergenic | 35.0% | |
| ATTGCTGAGAAAGGAAAAGA+AGG | + | chr7.4:3939877-3939896 | MS.gene054441:CDS | 35.0% | |
| CAAGAAAGATGTGCCAAATT+TGG | + | chr7.4:3942006-3942025 | MS.gene054441:CDS | 35.0% | |
| CAAGAGACGTCTAGTTAATT+TGG | - | chr7.4:3941331-3941350 | None:intergenic | 35.0% | |
| GCTTCCAAATTTGAAAAGAC+AGG | + | chr7.4:3941231-3941250 | MS.gene054441:CDS | 35.0% | |
| TACACAATCTTCCATTTGGT+GGG | + | chr7.4:3940048-3940067 | MS.gene054441:CDS | 35.0% | |
| TGGACATCTGTAACTAACTT+GGG | + | chr7.4:3941449-3941468 | MS.gene054441:intron | 35.0% | |
| TGGCGTTGCATAATTCTATT+TGG | + | chr7.4:3941489-3941508 | MS.gene054441:intron | 35.0% | |
| TTACACAATCTTCCATTTGG+TGG | + | chr7.4:3940047-3940066 | MS.gene054441:CDS | 35.0% | |
| ! | AATTTCAGCTTCCATTTTCC+CGG | - | chr7.4:3941055-3941074 | None:intergenic | 35.0% |
| ! | ACATAGGCTTTGATTCTTTC+AGG | - | chr7.4:3940174-3940193 | None:intergenic | 35.0% |
| ! | CAATTTGAAAGCATGTCTGA+CGG | - | chr7.4:3941710-3941729 | None:intergenic | 35.0% |
| ! | CATAGGCTTTGATTCTTTCA+GGG | - | chr7.4:3940173-3940192 | None:intergenic | 35.0% |
| ! | TAAGTAAGACTCTGAGAAGT+TGG | + | chr7.4:3940952-3940971 | MS.gene054441:intron | 35.0% |
| ! | TACCATTTTCTTCGGTTGTT+GGG | - | chr7.4:3940906-3940925 | None:intergenic | 35.0% |
| ! | TCAGCTAGTACCATTTTCTT+CGG | - | chr7.4:3940914-3940933 | None:intergenic | 35.0% |
| ! | TTTTGCTTGTGGTATAATGG+AGG | + | chr7.4:3940407-3940426 | MS.gene054441:intron | 35.0% |
| !! | AGGTTTCACTTTTGGATTTC+TGG | - | chr7.4:3940220-3940239 | None:intergenic | 35.0% |
| !! | ATTCTCGTATTGACTAACTG+TGG | + | chr7.4:3941422-3941441 | MS.gene054441:intron | 35.0% |
| !! | GGTTTCACTTTTGGATTTCT+GGG | - | chr7.4:3940219-3940238 | None:intergenic | 35.0% |
| !! | TGGTACTTTAATTTGTGCTC+CGG | - | chr7.4:3941909-3941928 | None:intergenic | 35.0% |
| AACCCAACAACCGAAGAAAA+TGG | + | chr7.4:3940901-3940920 | MS.gene054441:intron | 40.0% | |
| ACCAAACAATACATCGAGAG+CGG | + | chr7.4:3941977-3941996 | MS.gene054441:CDS | 40.0% | |
| AGGAATAGAACACAGAACAG+TGG | + | chr7.4:3939831-3939850 | MS.gene054441:CDS | 40.0% | |
| AGGATTACGACTTGTAAGCA+TGG | - | chr7.4:3941109-3941128 | None:intergenic | 40.0% | |
| AGTGGTTATACAGAAAGGTG+TGG | + | chr7.4:3942033-3942052 | MS.gene054441:CDS | 40.0% | |
| ATGCTTACAAGTCGTAATCC+TGG | + | chr7.4:3941108-3941127 | MS.gene054441:CDS | 40.0% | |
| CCAAAAGTGAAACCTGTTGA+TGG | + | chr7.4:3940225-3940244 | MS.gene054441:CDS | 40.0% | |
| CTTCCTTGTAGCTCATGATT+GGG | + | chr7.4:3940113-3940132 | MS.gene054441:CDS | 40.0% | |
| GAAAAGACAGGATTTAGTGG+TGG | + | chr7.4:3941243-3941262 | MS.gene054441:CDS | 40.0% | |
| GAAAGATGTGCCAAATTTGG+AGG | + | chr7.4:3942009-3942028 | MS.gene054441:CDS | 40.0% | |
| GAAGTTCATCATAGGTGATC+TGG | + | chr7.4:3941931-3941950 | MS.gene054441:CDS | 40.0% | |
| GAGGAAGTGGTTATACAGAA+AGG | + | chr7.4:3942028-3942047 | MS.gene054441:CDS | 40.0% | |
| GTACCAGTGAAGTTCATCAT+AGG | + | chr7.4:3941923-3941942 | MS.gene054441:CDS | 40.0% | |
| GTGGACATCTGTAACTAACT+TGG | + | chr7.4:3941448-3941467 | MS.gene054441:intron | 40.0% | |
| GTGTAACTACTAATGGAAGC+TGG | - | chr7.4:3940033-3940052 | None:intergenic | 40.0% | |
| TAACAGAAATTGGGAGCTCA+CGG | + | chr7.4:3941874-3941893 | MS.gene054441:intron | 40.0% | |
| TAGTCCAGAACTGTTGATCA+AGG | + | chr7.4:3941083-3941102 | MS.gene054441:CDS | 40.0% | |
| TCACCTATGATGAACTTCAC+TGG | - | chr7.4:3941929-3941948 | None:intergenic | 40.0% | |
| TCTTCCTTGTAGCTCATGAT+TGG | + | chr7.4:3940112-3940131 | MS.gene054441:CDS | 40.0% | |
| TGCTTACAAGTCGTAATCCT+GGG | + | chr7.4:3941109-3941128 | MS.gene054441:CDS | 40.0% | |
| TTCCTTGTAGCTCATGATTG+GGG | + | chr7.4:3940114-3940133 | MS.gene054441:CDS | 40.0% | |
| TTCGGTTGTTGGGTTTCAAT+TGG | - | chr7.4:3940896-3940915 | None:intergenic | 40.0% | |
| TTGTAGGTATCAATGGTGGT+AGG | - | chr7.4:3941686-3941705 | None:intergenic | 40.0% | |
| ! | ATTTCAGCTTCCATTTTCCC+GGG | - | chr7.4:3941054-3941073 | None:intergenic | 40.0% |
| ! | CCATCAACAGGTTTCACTTT+TGG | - | chr7.4:3940228-3940247 | None:intergenic | 40.0% |
| ! | GTACCATTTTCTTCGGTTGT+TGG | - | chr7.4:3940907-3940926 | None:intergenic | 40.0% |
| ! | TATTGACTAACTGTGGTGAG+TGG | + | chr7.4:3941429-3941448 | MS.gene054441:intron | 40.0% |
| !! | TCACATGGATTGGAATTGGA+TGG | - | chr7.4:3941025-3941044 | None:intergenic | 40.0% |
| !!! | CCTGTTGTTTTGTTCCTTCA+CGG | + | chr7.4:3939901-3939920 | MS.gene054441:CDS | 40.0% |
| AAACAATACATCGAGAGCGG+TGG | + | chr7.4:3941980-3941999 | MS.gene054441:CDS | 45.0% | |
| ACCGCTCTCGATGTATTGTT+TGG | - | chr7.4:3941981-3942000 | None:intergenic | 45.0% | |
| ACTAATGGAAGCTGGAGCAT+CGG | - | chr7.4:3940025-3940044 | None:intergenic | 45.0% | |
| ATGCCTTCTTTGGACAGGAT+TGG | - | chr7.4:3941138-3941157 | None:intergenic | 45.0% | |
| CACAGAACAGTGGAAGTGAA+TGG | + | chr7.4:3939841-3939860 | MS.gene054441:CDS | 45.0% | |
| CATATTCTCCATGACCGAGA+GGG | - | chr7.4:3941400-3941419 | None:intergenic | 45.0% | |
| CCAATTCCAATCCATGTGAC+AGG | + | chr7.4:3941026-3941045 | MS.gene054441:intron | 45.0% | |
| CCGTGAAGGAACAAAACAAC+AGG | - | chr7.4:3939904-3939923 | None:intergenic | 45.0% | |
| CGGAACACTGAGACAAACAT+AGG | - | chr7.4:3940190-3940209 | None:intergenic | 45.0% | |
| CTTCTTGTGAGAGCCAAGAA+GGG | - | chr7.4:3941197-3941216 | None:intergenic | 45.0% | |
| GGCATTGTACTTGAAACGCT+GGG | - | chr7.4:3941171-3941190 | None:intergenic | 45.0% | |
| GGGTTGTTTGACCCTTAAGT+TGG | + | chr7.4:3941469-3941488 | MS.gene054441:intron | 45.0% | |
| TCATATTCTCCATGACCGAG+AGG | - | chr7.4:3941401-3941420 | None:intergenic | 45.0% | |
| TCTTCTTGTGAGAGCCAAGA+AGG | - | chr7.4:3941198-3941217 | None:intergenic | 45.0% | |
| TGACGGCTTGTAGGTATCAA+TGG | - | chr7.4:3941693-3941712 | None:intergenic | 45.0% | |
| TGTGCCAAATTTGGAGGAAG+TGG | + | chr7.4:3942015-3942034 | MS.gene054441:CDS | 45.0% | |
| TTCCTGAACTCTGGTACTCT+TGG | + | chr7.4:3939926-3939945 | MS.gene054441:CDS | 45.0% | |
| ! | ATGGCCTTGATCAACAGTTC+TGG | - | chr7.4:3941090-3941109 | None:intergenic | 45.0% |
| !! | CCTGTCACATGGATTGGAAT+TGG | - | chr7.4:3941029-3941048 | None:intergenic | 45.0% |
| !!! | ATTAATTATTTTTAAAATCA+AGG | - | chr7.4:3941564-3941583 | None:intergenic | 5.0% |
| !!! | TTGATTTTAAAAATAATTAA+TGG | + | chr7.4:3941563-3941582 | MS.gene054441:intron | 5.0% |
| AAGCATGTCTGACGGCTTGT+AGG | - | chr7.4:3941702-3941721 | None:intergenic | 50.0% | |
| AATCCATGTGACAGGAACCC+GGG | + | chr7.4:3941034-3941053 | MS.gene054441:intron | 50.0% | |
| ACAGCACGCATTCCATCAAC+AGG | - | chr7.4:3940240-3940259 | None:intergenic | 50.0% | |
| AGAGGGTTGGAACCTTGGAT+TGG | - | chr7.4:3941383-3941402 | None:intergenic | 50.0% | |
| AGAGTTCAGGAAAGCCGTGA+AGG | - | chr7.4:3939918-3939937 | None:intergenic | 50.0% | |
| AGCAACAGCACAGTAACCGA+GGG | - | chr7.4:3939977-3939996 | None:intergenic | 50.0% | |
| AGTGATGTGTAGGCTCACGA+AGG | - | chr7.4:3941647-3941666 | None:intergenic | 50.0% | |
| ATCCAAGGTTCCAACCCTCT+CGG | + | chr7.4:3941383-3941402 | MS.gene054441:intron | 50.0% | |
| CAACGATGTCACCCACCAAA+TGG | - | chr7.4:3940062-3940081 | None:intergenic | 50.0% | |
| CAATCCATGTGACAGGAACC+CGG | + | chr7.4:3941033-3941052 | MS.gene054441:intron | 50.0% | |
| CACCCCAATCATGAGCTACA+AGG | - | chr7.4:3940119-3940138 | None:intergenic | 50.0% | |
| CCACCAATCCTGTCCAAAGA+AGG | + | chr7.4:3941132-3941151 | MS.gene054441:CDS | 50.0% | |
| CCTTCTTTGGACAGGATTGG+TGG | - | chr7.4:3941135-3941154 | None:intergenic | 50.0% | |
| CGGCTTGTAGGTATCAATGG+TGG | - | chr7.4:3941690-3941709 | None:intergenic | 50.0% | |
| GATGGAATGCGTGCTGTGTA+TGG | + | chr7.4:3940243-3940262 | MS.gene054441:CDS | 50.0% | |
| TGATTTCCTCGGCAGCTTCT+TGG | - | chr7.4:3942072-3942091 | None:intergenic | 50.0% | |
| TTCACGGCTTTCCTGAACTC+TGG | + | chr7.4:3939917-3939936 | MS.gene054441:CDS | 50.0% | |
| TTGTGAGAGCCAAGAAGGGA+GGG | - | chr7.4:3941193-3941212 | None:intergenic | 50.0% | |
| ! | ATTGGGGTGCCATCATTGGT+TGG | + | chr7.4:3940130-3940149 | MS.gene054441:CDS | 50.0% |
| ! | CATGATTGGGGTGCCATCAT+TGG | + | chr7.4:3940126-3940145 | MS.gene054441:CDS | 50.0% |
| ! | GGGCATTGTACTTGAAACGC+TGG | - | chr7.4:3941172-3941191 | None:intergenic | 50.0% |
| !! | GTTGCTCTCATCGACTCACT+TGG | + | chr7.4:3940078-3940097 | MS.gene054441:CDS | 50.0% |
| AGCCAAGAGCAGCAATCTGG+TGG | - | chr7.4:3939954-3939973 | None:intergenic | 55.0% | |
| ATTGCTGCTCTTGGCTCCCT+CGG | + | chr7.4:3939958-3939977 | MS.gene054441:CDS | 55.0% | |
| CAACAACCAAGAAGCTGCCG+AGG | + | chr7.4:3942063-3942082 | MS.gene054441:CDS | 55.0% | |
| CGGGTTCCTGTCACATGGAT+TGG | - | chr7.4:3941035-3941054 | None:intergenic | 55.0% | |
| CTTGTGAGAGCCAAGAAGGG+AGG | - | chr7.4:3941194-3941213 | None:intergenic | 55.0% | |
| GAGCAACAGCACAGTAACCG+AGG | - | chr7.4:3939978-3939997 | None:intergenic | 55.0% | |
| GCTCCAGATCTCCGTGGTTA+CGG | + | chr7.4:3939994-3940013 | MS.gene054441:CDS | 55.0% | |
| GTACAATGCCCCTCCCTTCT+TGG | + | chr7.4:3941181-3941200 | MS.gene054441:CDS | 55.0% | |
| GTGACAGGAACCCGGGAAAA+TGG | + | chr7.4:3941041-3941060 | MS.gene054441:intron | 55.0% | |
| TGTGAGAGCCAAGAAGGGAG+GGG | - | chr7.4:3941192-3941211 | None:intergenic | 55.0% | |
| TTCTCCATGACCGAGAGGGT+TGG | - | chr7.4:3941396-3941415 | None:intergenic | 55.0% | |
| TTTCCCGGGTTCCTGTCACA+TGG | - | chr7.4:3941040-3941059 | None:intergenic | 55.0% | |
| !! | CGCCAAGAGTACCAGAGTTC+AGG | - | chr7.4:3939931-3939950 | None:intergenic | 55.0% |
| ATTGGGAGCTCACGGCAGCA+TGG | + | chr7.4:3941882-3941901 | MS.gene054441:CDS | 60.0% | |
| CGCCACCAGATTGCTGCTCT+TGG | + | chr7.4:3939949-3939968 | MS.gene054441:CDS | 60.0% | |
| GACCGAGAGGGTTGGAACCT+TGG | - | chr7.4:3941388-3941407 | None:intergenic | 60.0% | |
| GCTGTTGCTCCAGATCTCCG+TGG | + | chr7.4:3939988-3940007 | MS.gene054441:CDS | 60.0% | |
| GGGAGCCAAGAGCAGCAATC+TGG | - | chr7.4:3939957-3939976 | None:intergenic | 60.0% | |
| GGTTCCAACCCTCTCGGTCA+TGG | + | chr7.4:3941389-3941408 | MS.gene054441:intron | 60.0% | |
| TCGCCGTAACCACGGAGATC+TGG | - | chr7.4:3940000-3940019 | None:intergenic | 60.0% | |
| ! | TTGGACAGGATTGGTGGCCC+AGG | - | chr7.4:3941129-3941148 | None:intergenic | 60.0% |
| !! | CATCGGTGTCGCCGTAACCA+CGG | - | chr7.4:3940008-3940027 | None:intergenic | 60.0% |
| GAGCTCACGGCAGCATGGAC+CGG | + | chr7.4:3941887-3941906 | MS.gene054441:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 3939826 | 3942091 | 3939826 | ID=MS.gene054441 |
| chr7.4 | mRNA | 3939826 | 3942091 | 3939826 | ID=MS.gene054441.t1;Parent=MS.gene054441 |
| chr7.4 | exon | 3939826 | 3940293 | 3939826 | ID=MS.gene054441.t1.exon1;Parent=MS.gene054441.t1 |
| chr7.4 | CDS | 3939826 | 3940293 | 3939826 | ID=cds.MS.gene054441.t1;Parent=MS.gene054441.t1 |
| chr7.4 | exon | 3941048 | 3941292 | 3941048 | ID=MS.gene054441.t1.exon2;Parent=MS.gene054441.t1 |
| chr7.4 | CDS | 3941048 | 3941292 | 3941048 | ID=cds.MS.gene054441.t1;Parent=MS.gene054441.t1 |
| chr7.4 | exon | 3941880 | 3942091 | 3941880 | ID=MS.gene054441.t1.exon3;Parent=MS.gene054441.t1 |
| chr7.4 | CDS | 3941880 | 3942091 | 3941880 | ID=cds.MS.gene054441.t1;Parent=MS.gene054441.t1 |
| Gene Sequence |
| Protein sequence |
