Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054442.t1 | XP_013450482.1 | 95.3 | 319 | 15 | 0 | 1 | 319 | 1 | 319 | 4.80E-178 | 633.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054442.t1 | I6YGS0 | 39.4 | 320 | 174 | 8 | 7 | 316 | 7 | 316 | 3.9e-59 | 229.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054442.t1 | A0A072UFD9 | 95.3 | 319 | 15 | 0 | 1 | 319 | 1 | 319 | 3.5e-178 | 633.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054441 | MS.gene054442 | 0.982873 | 3.16E-156 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene054442 | MS.gene066361 | PPI |
| MS.gene054442 | MS.gene071500 | PPI |
| MS.gene054442 | MS.gene041604 | PPI |
| MS.gene77823 | MS.gene054442 | PPI |
| MS.gene035367 | MS.gene054442 | PPI |
| MS.gene054442 | MS.gene22955 | PPI |
| MS.gene071504 | MS.gene054442 | PPI |
| MS.gene012063 | MS.gene054442 | PPI |
| MS.gene071502 | MS.gene054442 | PPI |
| MS.gene066360 | MS.gene054442 | PPI |
| MS.gene89620 | MS.gene054442 | PPI |
| MS.gene054442 | MS.gene07001 | PPI |
| MS.gene035369 | MS.gene054442 | PPI |
| MS.gene054442 | MS.gene035371 | PPI |
| MS.gene76453 | MS.gene054442 | PPI |
| MS.gene025707 | MS.gene054442 | PPI |
| MS.gene035373 | MS.gene054442 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054442.t1 | MTR_7g112963 | 95.298 | 319 | 15 | 0 | 1 | 319 | 1 | 319 | 0.0 | 629 |
| MS.gene054442.t1 | MTR_7g112960 | 90.282 | 319 | 31 | 0 | 1 | 319 | 1 | 319 | 0.0 | 603 |
| MS.gene054442.t1 | MTR_7g112970 | 88.715 | 319 | 33 | 1 | 1 | 319 | 1 | 316 | 0.0 | 585 |
| MS.gene054442.t1 | MTR_7g113020 | 79.310 | 319 | 66 | 0 | 1 | 319 | 1 | 319 | 0.0 | 531 |
| MS.gene054442.t1 | MTR_7g113050 | 77.882 | 321 | 67 | 2 | 1 | 319 | 1 | 319 | 0.0 | 519 |
| MS.gene054442.t1 | MTR_7g113030 | 76.803 | 319 | 74 | 0 | 1 | 319 | 1 | 319 | 0.0 | 519 |
| MS.gene054442.t1 | MTR_7g113010 | 85.765 | 281 | 40 | 0 | 1 | 281 | 1 | 281 | 0.0 | 518 |
| MS.gene054442.t1 | MTR_7g112620 | 76.489 | 319 | 75 | 0 | 1 | 319 | 1 | 319 | 0.0 | 514 |
| MS.gene054442.t1 | MTR_7g112615 | 76.489 | 319 | 75 | 0 | 1 | 319 | 1 | 319 | 0.0 | 513 |
| MS.gene054442.t1 | MTR_4g005160 | 67.077 | 325 | 98 | 5 | 1 | 319 | 1 | 322 | 8.61e-161 | 451 |
| MS.gene054442.t1 | MTR_4g120240 | 62.617 | 321 | 116 | 3 | 1 | 319 | 37 | 355 | 3.53e-148 | 421 |
| MS.gene054442.t1 | MTR_7g108825 | 61.875 | 320 | 118 | 3 | 1 | 319 | 1 | 317 | 1.99e-143 | 407 |
| MS.gene054442.t1 | MTR_7g113050 | 77.083 | 240 | 51 | 2 | 1 | 238 | 1 | 238 | 9.76e-135 | 382 |
| MS.gene054442.t1 | MTR_7g112615 | 75.630 | 238 | 58 | 0 | 1 | 238 | 1 | 238 | 1.12e-133 | 379 |
| MS.gene054442.t1 | MTR_8g076680 | 47.678 | 323 | 157 | 5 | 1 | 319 | 3 | 317 | 1.07e-106 | 314 |
| MS.gene054442.t1 | MTR_7g112615 | 82.286 | 175 | 28 | 1 | 1 | 172 | 1 | 175 | 8.72e-103 | 299 |
| MS.gene054442.t1 | MTR_7g108825 | 59.833 | 239 | 92 | 3 | 1 | 238 | 1 | 236 | 5.40e-99 | 291 |
| MS.gene054442.t1 | MTR_1g083480 | 76.101 | 159 | 34 | 2 | 1 | 156 | 1 | 158 | 6.31e-87 | 258 |
| MS.gene054442.t1 | MTR_8g076680 | 47.521 | 242 | 117 | 3 | 1 | 238 | 3 | 238 | 1.07e-81 | 248 |
| MS.gene054442.t1 | MTR_7g112910 | 49.402 | 251 | 68 | 7 | 72 | 319 | 1 | 195 | 1.72e-68 | 212 |
| MS.gene054442.t1 | MTR_4g089060 | 35.826 | 321 | 191 | 6 | 1 | 318 | 1 | 309 | 2.23e-65 | 208 |
| MS.gene054442.t1 | MTR_2g090240 | 35.202 | 321 | 194 | 6 | 1 | 318 | 1 | 310 | 1.58e-64 | 206 |
| MS.gene054442.t1 | MTR_4g089040 | 35.514 | 321 | 192 | 6 | 1 | 318 | 1 | 309 | 2.70e-64 | 206 |
| MS.gene054442.t1 | MTR_2g090245 | 35.514 | 321 | 193 | 7 | 1 | 318 | 1 | 310 | 7.70e-64 | 204 |
| MS.gene054442.t1 | MTR_4g089060 | 33.333 | 348 | 190 | 7 | 1 | 318 | 1 | 336 | 2.51e-60 | 196 |
| MS.gene054442.t1 | MTR_3g024250 | 82.075 | 106 | 19 | 0 | 47 | 152 | 2 | 107 | 3.04e-57 | 181 |
| MS.gene054442.t1 | MTR_4g089060 | 37.768 | 233 | 136 | 3 | 1 | 231 | 1 | 226 | 6.48e-55 | 179 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054442.t1 | AT3G05600 | 63.077 | 325 | 113 | 4 | 1 | 319 | 1 | 324 | 1.17e-153 | 434 |
| MS.gene054442.t1 | AT4G02340 | 60.312 | 320 | 122 | 3 | 1 | 319 | 1 | 316 | 1.72e-145 | 413 |
| MS.gene054442.t1 | AT4G15960 | 53.538 | 325 | 144 | 3 | 1 | 319 | 51 | 374 | 1.09e-127 | 369 |
| MS.gene054442.t1 | AT2G26740 | 60.248 | 322 | 121 | 4 | 4 | 319 | 1 | 321 | 1.61e-127 | 367 |
| MS.gene054442.t1 | AT2G26750 | 58.255 | 321 | 128 | 4 | 4 | 319 | 1 | 320 | 1.06e-122 | 355 |
| MS.gene054442.t1 | AT3G05600 | 65.164 | 244 | 78 | 4 | 1 | 238 | 1 | 243 | 1.25e-114 | 331 |
| MS.gene054442.t1 | AT4G15955 | 51.692 | 325 | 121 | 5 | 5 | 319 | 6 | 304 | 2.30e-112 | 328 |
| MS.gene054442.t1 | AT3G51000 | 48.758 | 322 | 152 | 8 | 4 | 319 | 5 | 319 | 2.00e-106 | 313 |
| MS.gene054442.t1 | AT4G15955 | 60.694 | 173 | 58 | 2 | 5 | 167 | 6 | 178 | 5.71e-73 | 223 |
| MS.gene054442.t1 | AT4G15955 | 58.382 | 173 | 62 | 2 | 5 | 167 | 6 | 178 | 6.13e-69 | 213 |
Find 89 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATAGGCTTTGATTCTTTC+AGG | 0.119767 | 7.4:-3952849 | None:intergenic |
| CAAGAAAGATGTGCCAAATT+TGG | 0.205231 | 7.4:+3954684 | MS.gene054442:CDS |
| ATAACCACTTCCTCCAAATT+TGG | 0.220764 | 7.4:-3954697 | None:intergenic |
| CCATCAACAGGTTTCACTTT+TGG | 0.231114 | 7.4:-3952903 | None:intergenic |
| TGATTTCCTCGGCAGCTTCT+TGG | 0.237229 | 7.4:-3954747 | None:intergenic |
| ATGAGATAATATGCCTTCTT+TGG | 0.258836 | 7.4:-3953823 | None:intergenic |
| GATTTAGTTTACACTTCTTT+TGG | 0.261386 | 7.4:+3954631 | MS.gene054442:CDS |
| CGCCACCAGATTGCTGCTCT+TGG | 0.265149 | 7.4:+3952627 | MS.gene054442:CDS |
| GTGACAGGAACCCGGGAAAA+TGG | 0.290473 | 7.4:+3953719 | MS.gene054442:intron |
| GTACAATGCCCCTCCCTTCT+TGG | 0.292567 | 7.4:+3953859 | MS.gene054442:CDS |
| CTTCCTTGTAGCTCATGATT+GGG | 0.316992 | 7.4:+3952791 | MS.gene054442:CDS |
| GAAGATTGTGTAACTACTAA+TGG | 0.366861 | 7.4:-3952715 | None:intergenic |
| TCTTCCTTGTAGCTCATGAT+TGG | 0.373039 | 7.4:+3952790 | MS.gene054442:CDS |
| CGCCAAGAGTACCAGAGTTC+AGG | 0.381681 | 7.4:-3952606 | None:intergenic |
| CCAAAAGTGAAACCTGTTGA+TGG | 0.389532 | 7.4:+3952903 | MS.gene054442:CDS |
| TCGCCGTAACCACGGAGATC+TGG | 0.394426 | 7.4:-3952675 | None:intergenic |
| TTTGAAAAGACAGGATTTAG+TGG | 0.395852 | 7.4:+3953918 | MS.gene054442:CDS |
| TTTGGATTTCTGGGTAAATA+CGG | 0.407798 | 7.4:-3952885 | None:intergenic |
| ACCGCTCTCGATGTATTGTT+TGG | 0.413172 | 7.4:-3954656 | None:intergenic |
| TTATTATATCTGCAGATTCC+AGG | 0.414957 | 7.4:+3952950 | MS.gene054442:CDS |
| GCTTCCAAATTTGAAAAGAC+AGG | 0.423519 | 7.4:+3953909 | MS.gene054442:CDS |
| GAAGTTCATCATAGGTGATC+TGG | 0.427789 | 7.4:+3954609 | MS.gene054442:CDS |
| CATAGGCTTTGATTCTTTCA+GGG | 0.432762 | 7.4:-3952848 | None:intergenic |
| TTCCTGAACTCTGGTACTCT+TGG | 0.435109 | 7.4:+3952604 | MS.gene054442:CDS |
| CATGATTGGGGTGCCATCAT+TGG | 0.436037 | 7.4:+3952804 | MS.gene054442:CDS |
| CCTTCTTTGGACAGGATTGG+TGG | 0.444630 | 7.4:-3953810 | None:intergenic |
| GCTCCAGATCTCCGTGGTTA+CGG | 0.448429 | 7.4:+3952672 | MS.gene054442:CDS |
| TAGTTACACAATCTTCCATT+TGG | 0.454984 | 7.4:+3952722 | MS.gene054442:CDS |
| ATGCTTACAAGTCGTAATCC+TGG | 0.458065 | 7.4:+3953786 | MS.gene054442:CDS |
| ATAATATGCCTTCTTTGGAC+AGG | 0.459599 | 7.4:-3953818 | None:intergenic |
| GGGAGCCAAGAGCAGCAATC+TGG | 0.464162 | 7.4:-3952632 | None:intergenic |
| ACAGCACGCATTCCATCAAC+AGG | 0.466950 | 7.4:-3952915 | None:intergenic |
| ATTGCTGCTCTTGGCTCCCT+CGG | 0.472828 | 7.4:+3952636 | MS.gene054442:CDS |
| ATGCCTTCTTTGGACAGGAT+TGG | 0.476879 | 7.4:-3953813 | None:intergenic |
| GAGCTCACGGCAGCATGGAC+CGG | 0.477692 | 7.4:+3954565 | MS.gene054442:CDS |
| GTACCAGTGAAGTTCATCAT+AGG | 0.483596 | 7.4:+3954601 | MS.gene054442:CDS |
| AAAATGCATATTGCTGAGAA+AGG | 0.485302 | 7.4:+3952546 | MS.gene054442:CDS |
| GATGGAATGCGTGCTGTGTA+TGG | 0.487041 | 7.4:+3952921 | MS.gene054442:CDS |
| CAACGATGTCACCCACCAAA+TGG | 0.489958 | 7.4:-3952737 | None:intergenic |
| TGTGCCAAATTTGGAGGAAG+TGG | 0.500333 | 7.4:+3954693 | MS.gene054442:CDS |
| TTCACGGCTTTCCTGAACTC+TGG | 0.502205 | 7.4:+3952595 | MS.gene054442:CDS |
| TTGGACAGGATTGGTGGCCC+AGG | 0.507255 | 7.4:-3953804 | None:intergenic |
| ATGGCCTTGATCAACAGTTC+TGG | 0.508152 | 7.4:-3953765 | None:intergenic |
| TCTTCTTGTGAGAGCCAAGA+AGG | 0.512333 | 7.4:-3953873 | None:intergenic |
| CCGTGAAGGAACAAAACAAC+AGG | 0.513488 | 7.4:-3952579 | None:intergenic |
| TGCTTACAAGTCGTAATCCT+GGG | 0.514561 | 7.4:+3953787 | MS.gene054442:CDS |
| CACAGAACAGTGGAAGTGAA+TGG | 0.515742 | 7.4:+3952519 | MS.gene054442:CDS |
| CAATCCATGTGACAGGAACC+CGG | 0.522947 | 7.4:+3953711 | MS.gene054442:intron |
| TGGTACTTTAATTTGTGCTC+CGG | 0.523809 | 7.4:-3954584 | None:intergenic |
| TACACAATCTTCCATTTGGT+GGG | 0.524970 | 7.4:+3952726 | MS.gene054442:CDS |
| CCACCAATCCTGTCCAAAGA+AGG | 0.525317 | 7.4:+3953810 | MS.gene054442:CDS |
| GAAAGATGTGCCAAATTTGG+AGG | 0.528499 | 7.4:+3954687 | MS.gene054442:CDS |
| GTGTAACTACTAATGGAAGC+TGG | 0.533389 | 7.4:-3952708 | None:intergenic |
| ACAAAGATACCAACCAATGA+TGG | 0.536291 | 7.4:-3952817 | None:intergenic |
| CACCCCAATCATGAGCTACA+AGG | 0.540560 | 7.4:-3952794 | None:intergenic |
| TTCCTTGTAGCTCATGATTG+GGG | 0.541290 | 7.4:+3952792 | MS.gene054442:CDS |
| TTACACAATCTTCCATTTGG+TGG | 0.541545 | 7.4:+3952725 | MS.gene054442:CDS |
| GGGCATTGTACTTGAAACGC+TGG | 0.542022 | 7.4:-3953847 | None:intergenic |
| ATTGCTGAGAAAGGAAAAGA+AGG | 0.548522 | 7.4:+3952555 | MS.gene054442:CDS |
| GAGGAAGTGGTTATACAGAA+AGG | 0.551271 | 7.4:+3954706 | MS.gene054442:CDS |
| AATCCATGTGACAGGAACCC+GGG | 0.551511 | 7.4:+3953712 | MS.gene054442:intron |
| GTTGCTCTCATCGACTCACT+TGG | 0.552314 | 7.4:+3952756 | MS.gene054442:CDS |
| TCACCTATGATGAACTTCAC+TGG | 0.553123 | 7.4:-3954604 | None:intergenic |
| TTGTGAGAGCCAAGAAGGGA+GGG | 0.554852 | 7.4:-3953868 | None:intergenic |
| ATGGAAGCTGAAATTGCTAA+AGG | 0.559276 | 7.4:+3953738 | MS.gene054442:CDS |
| TAGTCCAGAACTGTTGATCA+AGG | 0.560762 | 7.4:+3953761 | MS.gene054442:CDS |
| CGGAACACTGAGACAAACAT+AGG | 0.567344 | 7.4:-3952865 | None:intergenic |
| ATTGGGGTGCCATCATTGGT+TGG | 0.574625 | 7.4:+3952808 | MS.gene054442:CDS |
| AGCCAAGAGCAGCAATCTGG+TGG | 0.583237 | 7.4:-3952629 | None:intergenic |
| AATGTGATTACTGATTTCCT+CGG | 0.590060 | 7.4:-3954758 | None:intergenic |
| TGTGAGAGCCAAGAAGGGAG+GGG | 0.590664 | 7.4:-3953867 | None:intergenic |
| GGCATTGTACTTGAAACGCT+GGG | 0.594338 | 7.4:-3953846 | None:intergenic |
| ACTAATGGAAGCTGGAGCAT+CGG | 0.595210 | 7.4:-3952700 | None:intergenic |
| CATCGGTGTCGCCGTAACCA+CGG | 0.597704 | 7.4:-3952683 | None:intergenic |
| CTTGTGAGAGCCAAGAAGGG+AGG | 0.599078 | 7.4:-3953869 | None:intergenic |
| ATTGGGAGCTCACGGCAGCA+TGG | 0.611461 | 7.4:+3954560 | MS.gene054442:CDS |
| GAAAAGACAGGATTTAGTGG+TGG | 0.611798 | 7.4:+3953921 | MS.gene054442:CDS |
| TAACAGAAATTGGGAGCTCA+CGG | 0.614147 | 7.4:+3954552 | MS.gene054442:intron |
| CAACAACCAAGAAGCTGCCG+AGG | 0.622555 | 7.4:+3954741 | MS.gene054442:CDS |
| CTTCTTGTGAGAGCCAAGAA+GGG | 0.624050 | 7.4:-3953872 | None:intergenic |
| AGAGTTCAGGAAAGCCGTGA+AGG | 0.628117 | 7.4:-3952593 | None:intergenic |
| AGGATTACGACTTGTAAGCA+TGG | 0.633672 | 7.4:-3953784 | None:intergenic |
| GAGCAACAGCACAGTAACCG+AGG | 0.650868 | 7.4:-3952653 | None:intergenic |
| AAACAATACATCGAGAGCGG+TGG | 0.675908 | 7.4:+3954658 | MS.gene054442:CDS |
| AGGAATAGAACACAGAACAG+TGG | 0.676997 | 7.4:+3952509 | MS.gene054442:CDS |
| AGCAACAGCACAGTAACCGA+GGG | 0.678247 | 7.4:-3952652 | None:intergenic |
| AGTGGTTATACAGAAAGGTG+TGG | 0.683843 | 7.4:+3954711 | MS.gene054442:CDS |
| ACCAAACAATACATCGAGAG+CGG | 0.693164 | 7.4:+3954655 | MS.gene054442:CDS |
| GCTGTTGCTCCAGATCTCCG+TGG | 0.735697 | 7.4:+3952666 | MS.gene054442:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATATATCAATTCTTAAAA+TGG | - | chr7.4:3953374-3953393 | None:intergenic | 10.0% |
| !! | AATTAAATCCTAAATTCATT+TGG | + | chr7.4:3953433-3953452 | MS.gene054442:intron | 15.0% |
| !!! | TTAGGATTTAATTTTATGTA+CGG | - | chr7.4:3953426-3953445 | None:intergenic | 15.0% |
| !!! | TTTTGAACTTGATAAATAAA+TGG | + | chr7.4:3953480-3953499 | MS.gene054442:intron | 15.0% |
| !! | AAATCAATAAGCTCAAATTA+CGG | - | chr7.4:3953181-3953200 | None:intergenic | 20.0% |
| !! | ATGAGTTTAATCTAAACTTT+AGG | + | chr7.4:3953457-3953476 | MS.gene054442:intron | 20.0% |
| !! | TATAAATTACAAGAGAATGA+TGG | - | chr7.4:3954033-3954052 | None:intergenic | 20.0% |
| !! | TTATAATAATTGCTGAGATA+AGG | + | chr7.4:3954275-3954294 | MS.gene054442:intron | 20.0% |
| !!! | AGACATTTTAAGTTTTTCTT+TGG | - | chr7.4:3953238-3953257 | None:intergenic | 20.0% |
| !!! | GTTATACACTAACTAAATTT+TGG | - | chr7.4:3953544-3953563 | None:intergenic | 20.0% |
| !!! | GTTTTATGTTAACAGAAATT+GGG | + | chr7.4:3954543-3954562 | MS.gene054442:intron | 20.0% |
| !!! | TGTTTTATGTTAACAGAAAT+TGG | + | chr7.4:3954542-3954561 | MS.gene054442:intron | 20.0% |
| !!! | TTAACATAAAACAAAAGCAT+TGG | - | chr7.4:3954535-3954554 | None:intergenic | 20.0% |
| !!! | TTTTAAAATCAAGGATTAAG+AGG | - | chr7.4:3954233-3954252 | None:intergenic | 20.0% |
| ! | AAAAATGAAAAATACGAACC+TGG | - | chr7.4:3952971-3952990 | None:intergenic | 25.0% |
| ! | AACTCATACCAAATGAATTT+AGG | - | chr7.4:3953444-3953463 | None:intergenic | 25.0% |
| ! | ACAATCTTAAATTTGATGGA+AGG | + | chr7.4:3954453-3954472 | MS.gene054442:intron | 25.0% |
| ! | ATTGGATTACAAATTTGACA+AGG | - | chr7.4:3953520-3953539 | None:intergenic | 25.0% |
| ! | ATTTATACAAAACCAATCCA+AGG | + | chr7.4:3954046-3954065 | MS.gene054442:intron | 25.0% |
| ! | CAAAAACCAAAAGATAAAGT+GGG | - | chr7.4:3953158-3953177 | None:intergenic | 25.0% |
| ! | GATTAATTCTACTTGAACTA+TGG | + | chr7.4:3953022-3953041 | MS.gene054442:intron | 25.0% |
| ! | TCTGACAATCTTAAATTTGA+TGG | + | chr7.4:3954449-3954468 | MS.gene054442:intron | 25.0% |
| ! | TGGTTCAACAAATATCTATA+TGG | - | chr7.4:3953354-3953373 | None:intergenic | 25.0% |
| !! | AAATCCTGTCTTTTCAAATT+TGG | - | chr7.4:3953916-3953935 | None:intergenic | 25.0% |
| !!! | AAGTTTTAGTTTTTTGCTTG+TGG | + | chr7.4:3953074-3953093 | MS.gene054442:intron | 25.0% |
| !!! | CACTAACTAAATTTTGGTAT+TGG | - | chr7.4:3953538-3953557 | None:intergenic | 25.0% |
| !!! | GATTTAGTTTACACTTCTTT+TGG | + | chr7.4:3954631-3954650 | MS.gene054442:CDS | 25.0% |
| !!! | TGAGCTTATTGATTTTAAAG+TGG | + | chr7.4:3953186-3953205 | MS.gene054442:intron | 25.0% |
| AAAATGCATATTGCTGAGAA+AGG | + | chr7.4:3952546-3952565 | MS.gene054442:CDS | 30.0% | |
| ATGAGATAATATGCCTTCTT+TGG | - | chr7.4:3953826-3953845 | None:intergenic | 30.0% | |
| CTTGATAAATAAATGGAGAC+TGG | + | chr7.4:3953487-3953506 | MS.gene054442:intron | 30.0% | |
| GAAGATTGTGTAACTACTAA+TGG | - | chr7.4:3952718-3952737 | None:intergenic | 30.0% | |
| GCAAAAACCAAAAGATAAAG+TGG | - | chr7.4:3953159-3953178 | None:intergenic | 30.0% | |
| TAGTTACACAATCTTCCATT+TGG | + | chr7.4:3952722-3952741 | MS.gene054442:CDS | 30.0% | |
| TTATATCATGAGTGATGTGT+AGG | - | chr7.4:3954335-3954354 | None:intergenic | 30.0% | |
| TTATTATATCTGCAGATTCC+AGG | + | chr7.4:3952950-3952969 | MS.gene054442:CDS | 30.0% | |
| TTTGAAAAGACAGGATTTAG+TGG | + | chr7.4:3953918-3953937 | MS.gene054442:CDS | 30.0% | |
| ! | AGATTGTCAGATGATTTTGA+AGG | - | chr7.4:3954440-3954459 | None:intergenic | 30.0% |
| ! | CGTCTAGTTAATTTGGAAAA+AGG | - | chr7.4:3954002-3954021 | None:intergenic | 30.0% |
| ! | TATTCACCCACTTTATCTTT+TGG | + | chr7.4:3953149-3953168 | MS.gene054442:intron | 30.0% |
| ! | TTTGGATTTCTGGGTAAATA+CGG | - | chr7.4:3952888-3952907 | None:intergenic | 30.0% |
| !! | AATGTGATTACTGATTTCCT+CGG | - | chr7.4:3954761-3954780 | None:intergenic | 30.0% |
| !!! | GTTTTTTGCTTGTGGTATAA+TGG | + | chr7.4:3953082-3953101 | MS.gene054442:intron | 30.0% |
| AATTATGCAACGCCAACTTA+AGG | - | chr7.4:3954162-3954181 | None:intergenic | 35.0% | |
| ACAAAGATACCAACCAATGA+TGG | - | chr7.4:3952820-3952839 | None:intergenic | 35.0% | |
| ATAACCACTTCCTCCAAATT+TGG | - | chr7.4:3954700-3954719 | None:intergenic | 35.0% | |
| ATAATATGCCTTCTTTGGAC+AGG | - | chr7.4:3953821-3953840 | None:intergenic | 35.0% | |
| ATGGAAGCTGAAATTGCTAA+AGG | + | chr7.4:3953738-3953757 | MS.gene054442:CDS | 35.0% | |
| ATTATGCAACGCCAACTTAA+GGG | - | chr7.4:3954161-3954180 | None:intergenic | 35.0% | |
| ATTGCTGAGAAAGGAAAAGA+AGG | + | chr7.4:3952555-3952574 | MS.gene054442:CDS | 35.0% | |
| CAAGAAAGATGTGCCAAATT+TGG | + | chr7.4:3954684-3954703 | MS.gene054442:CDS | 35.0% | |
| CAAGAGACGTCTAGTTAATT+TGG | - | chr7.4:3954009-3954028 | None:intergenic | 35.0% | |
| GCTTCCAAATTTGAAAAGAC+AGG | + | chr7.4:3953909-3953928 | MS.gene054442:CDS | 35.0% | |
| TACACAATCTTCCATTTGGT+GGG | + | chr7.4:3952726-3952745 | MS.gene054442:CDS | 35.0% | |
| TGGACATCTGTAACTAACTT+GGG | + | chr7.4:3954127-3954146 | MS.gene054442:intron | 35.0% | |
| TGGCGTTGCATAATTCTATT+TGG | + | chr7.4:3954167-3954186 | MS.gene054442:intron | 35.0% | |
| TTACACAATCTTCCATTTGG+TGG | + | chr7.4:3952725-3952744 | MS.gene054442:CDS | 35.0% | |
| ! | AATTTCAGCTTCCATTTTCC+CGG | - | chr7.4:3953733-3953752 | None:intergenic | 35.0% |
| ! | ACATAGGCTTTGATTCTTTC+AGG | - | chr7.4:3952852-3952871 | None:intergenic | 35.0% |
| ! | CAATTTGAAAGCATGTCTGA+CGG | - | chr7.4:3954388-3954407 | None:intergenic | 35.0% |
| ! | CATAGGCTTTGATTCTTTCA+GGG | - | chr7.4:3952851-3952870 | None:intergenic | 35.0% |
| ! | TAAGTAAGACTCTGAGAAGT+TGG | + | chr7.4:3953630-3953649 | MS.gene054442:intron | 35.0% |
| ! | TACCATTTTCTTCGGTTGTT+GGG | - | chr7.4:3953584-3953603 | None:intergenic | 35.0% |
| ! | TCAGCTAGTACCATTTTCTT+CGG | - | chr7.4:3953592-3953611 | None:intergenic | 35.0% |
| ! | TTTTGCTTGTGGTATAATGG+AGG | + | chr7.4:3953085-3953104 | MS.gene054442:intron | 35.0% |
| !! | AGGTTTCACTTTTGGATTTC+TGG | - | chr7.4:3952898-3952917 | None:intergenic | 35.0% |
| !! | ATTCTCGTATTGACTAACTG+TGG | + | chr7.4:3954100-3954119 | MS.gene054442:intron | 35.0% |
| !! | GGTTTCACTTTTGGATTTCT+GGG | - | chr7.4:3952897-3952916 | None:intergenic | 35.0% |
| !! | TGGTACTTTAATTTGTGCTC+CGG | - | chr7.4:3954587-3954606 | None:intergenic | 35.0% |
| AACCCAACAACCGAAGAAAA+TGG | + | chr7.4:3953579-3953598 | MS.gene054442:intron | 40.0% | |
| ACCAAACAATACATCGAGAG+CGG | + | chr7.4:3954655-3954674 | MS.gene054442:CDS | 40.0% | |
| AGGAATAGAACACAGAACAG+TGG | + | chr7.4:3952509-3952528 | MS.gene054442:CDS | 40.0% | |
| AGGATTACGACTTGTAAGCA+TGG | - | chr7.4:3953787-3953806 | None:intergenic | 40.0% | |
| AGTGGTTATACAGAAAGGTG+TGG | + | chr7.4:3954711-3954730 | MS.gene054442:CDS | 40.0% | |
| ATGCTTACAAGTCGTAATCC+TGG | + | chr7.4:3953786-3953805 | MS.gene054442:CDS | 40.0% | |
| CCAAAAGTGAAACCTGTTGA+TGG | + | chr7.4:3952903-3952922 | MS.gene054442:CDS | 40.0% | |
| CTTCCTTGTAGCTCATGATT+GGG | + | chr7.4:3952791-3952810 | MS.gene054442:CDS | 40.0% | |
| GAAAAGACAGGATTTAGTGG+TGG | + | chr7.4:3953921-3953940 | MS.gene054442:CDS | 40.0% | |
| GAAAGATGTGCCAAATTTGG+AGG | + | chr7.4:3954687-3954706 | MS.gene054442:CDS | 40.0% | |
| GAAGTTCATCATAGGTGATC+TGG | + | chr7.4:3954609-3954628 | MS.gene054442:CDS | 40.0% | |
| GAGGAAGTGGTTATACAGAA+AGG | + | chr7.4:3954706-3954725 | MS.gene054442:CDS | 40.0% | |
| GTACCAGTGAAGTTCATCAT+AGG | + | chr7.4:3954601-3954620 | MS.gene054442:CDS | 40.0% | |
| GTGGACATCTGTAACTAACT+TGG | + | chr7.4:3954126-3954145 | MS.gene054442:intron | 40.0% | |
| GTGTAACTACTAATGGAAGC+TGG | - | chr7.4:3952711-3952730 | None:intergenic | 40.0% | |
| TAACAGAAATTGGGAGCTCA+CGG | + | chr7.4:3954552-3954571 | MS.gene054442:intron | 40.0% | |
| TAGTCCAGAACTGTTGATCA+AGG | + | chr7.4:3953761-3953780 | MS.gene054442:CDS | 40.0% | |
| TCACCTATGATGAACTTCAC+TGG | - | chr7.4:3954607-3954626 | None:intergenic | 40.0% | |
| TCTTCCTTGTAGCTCATGAT+TGG | + | chr7.4:3952790-3952809 | MS.gene054442:CDS | 40.0% | |
| TGCTTACAAGTCGTAATCCT+GGG | + | chr7.4:3953787-3953806 | MS.gene054442:CDS | 40.0% | |
| TTCCTTGTAGCTCATGATTG+GGG | + | chr7.4:3952792-3952811 | MS.gene054442:CDS | 40.0% | |
| TTCGGTTGTTGGGTTTCAAT+TGG | - | chr7.4:3953574-3953593 | None:intergenic | 40.0% | |
| TTGTAGGTATCAATGGTGGT+AGG | - | chr7.4:3954364-3954383 | None:intergenic | 40.0% | |
| ! | ATTTCAGCTTCCATTTTCCC+GGG | - | chr7.4:3953732-3953751 | None:intergenic | 40.0% |
| ! | CCATCAACAGGTTTCACTTT+TGG | - | chr7.4:3952906-3952925 | None:intergenic | 40.0% |
| ! | GTACCATTTTCTTCGGTTGT+TGG | - | chr7.4:3953585-3953604 | None:intergenic | 40.0% |
| ! | TATTGACTAACTGTGGTGAG+TGG | + | chr7.4:3954107-3954126 | MS.gene054442:intron | 40.0% |
| !! | TCACATGGATTGGAATTGGA+TGG | - | chr7.4:3953703-3953722 | None:intergenic | 40.0% |
| !!! | CCTGTTGTTTTGTTCCTTCA+CGG | + | chr7.4:3952579-3952598 | MS.gene054442:CDS | 40.0% |
| AAACAATACATCGAGAGCGG+TGG | + | chr7.4:3954658-3954677 | MS.gene054442:CDS | 45.0% | |
| ACCGCTCTCGATGTATTGTT+TGG | - | chr7.4:3954659-3954678 | None:intergenic | 45.0% | |
| ACTAATGGAAGCTGGAGCAT+CGG | - | chr7.4:3952703-3952722 | None:intergenic | 45.0% | |
| ATGCCTTCTTTGGACAGGAT+TGG | - | chr7.4:3953816-3953835 | None:intergenic | 45.0% | |
| CACAGAACAGTGGAAGTGAA+TGG | + | chr7.4:3952519-3952538 | MS.gene054442:CDS | 45.0% | |
| CATATTCTCCATGACCGAGA+GGG | - | chr7.4:3954078-3954097 | None:intergenic | 45.0% | |
| CCAATTCCAATCCATGTGAC+AGG | + | chr7.4:3953704-3953723 | MS.gene054442:intron | 45.0% | |
| CCGTGAAGGAACAAAACAAC+AGG | - | chr7.4:3952582-3952601 | None:intergenic | 45.0% | |
| CGGAACACTGAGACAAACAT+AGG | - | chr7.4:3952868-3952887 | None:intergenic | 45.0% | |
| CTTCTTGTGAGAGCCAAGAA+GGG | - | chr7.4:3953875-3953894 | None:intergenic | 45.0% | |
| GGCATTGTACTTGAAACGCT+GGG | - | chr7.4:3953849-3953868 | None:intergenic | 45.0% | |
| GGGTTGTTTGACCCTTAAGT+TGG | + | chr7.4:3954147-3954166 | MS.gene054442:intron | 45.0% | |
| TCATATTCTCCATGACCGAG+AGG | - | chr7.4:3954079-3954098 | None:intergenic | 45.0% | |
| TCTTCTTGTGAGAGCCAAGA+AGG | - | chr7.4:3953876-3953895 | None:intergenic | 45.0% | |
| TGACGGCTTGTAGGTATCAA+TGG | - | chr7.4:3954371-3954390 | None:intergenic | 45.0% | |
| TGTGCCAAATTTGGAGGAAG+TGG | + | chr7.4:3954693-3954712 | MS.gene054442:CDS | 45.0% | |
| TTCCTGAACTCTGGTACTCT+TGG | + | chr7.4:3952604-3952623 | MS.gene054442:CDS | 45.0% | |
| ! | ATGGCCTTGATCAACAGTTC+TGG | - | chr7.4:3953768-3953787 | None:intergenic | 45.0% |
| !! | CCTGTCACATGGATTGGAAT+TGG | - | chr7.4:3953707-3953726 | None:intergenic | 45.0% |
| !!! | ATTAATTATTTTTAAAATCA+AGG | - | chr7.4:3954242-3954261 | None:intergenic | 5.0% |
| !!! | TTGATTTTAAAAATAATTAA+TGG | + | chr7.4:3954241-3954260 | MS.gene054442:intron | 5.0% |
| AAGCATGTCTGACGGCTTGT+AGG | - | chr7.4:3954380-3954399 | None:intergenic | 50.0% | |
| AATCCATGTGACAGGAACCC+GGG | + | chr7.4:3953712-3953731 | MS.gene054442:intron | 50.0% | |
| ACAGCACGCATTCCATCAAC+AGG | - | chr7.4:3952918-3952937 | None:intergenic | 50.0% | |
| AGAGGGTTGGAACCTTGGAT+TGG | - | chr7.4:3954061-3954080 | None:intergenic | 50.0% | |
| AGAGTTCAGGAAAGCCGTGA+AGG | - | chr7.4:3952596-3952615 | None:intergenic | 50.0% | |
| AGCAACAGCACAGTAACCGA+GGG | - | chr7.4:3952655-3952674 | None:intergenic | 50.0% | |
| AGTGATGTGTAGGCTCACGA+AGG | - | chr7.4:3954325-3954344 | None:intergenic | 50.0% | |
| ATCCAAGGTTCCAACCCTCT+CGG | + | chr7.4:3954061-3954080 | MS.gene054442:intron | 50.0% | |
| CAACGATGTCACCCACCAAA+TGG | - | chr7.4:3952740-3952759 | None:intergenic | 50.0% | |
| CAATCCATGTGACAGGAACC+CGG | + | chr7.4:3953711-3953730 | MS.gene054442:intron | 50.0% | |
| CACCCCAATCATGAGCTACA+AGG | - | chr7.4:3952797-3952816 | None:intergenic | 50.0% | |
| CCACCAATCCTGTCCAAAGA+AGG | + | chr7.4:3953810-3953829 | MS.gene054442:CDS | 50.0% | |
| CCTTCTTTGGACAGGATTGG+TGG | - | chr7.4:3953813-3953832 | None:intergenic | 50.0% | |
| CGGCTTGTAGGTATCAATGG+TGG | - | chr7.4:3954368-3954387 | None:intergenic | 50.0% | |
| GATGGAATGCGTGCTGTGTA+TGG | + | chr7.4:3952921-3952940 | MS.gene054442:CDS | 50.0% | |
| TGATTTCCTCGGCAGCTTCT+TGG | - | chr7.4:3954750-3954769 | None:intergenic | 50.0% | |
| TTCACGGCTTTCCTGAACTC+TGG | + | chr7.4:3952595-3952614 | MS.gene054442:CDS | 50.0% | |
| TTGTGAGAGCCAAGAAGGGA+GGG | - | chr7.4:3953871-3953890 | None:intergenic | 50.0% | |
| ! | ATTGGGGTGCCATCATTGGT+TGG | + | chr7.4:3952808-3952827 | MS.gene054442:CDS | 50.0% |
| ! | CATGATTGGGGTGCCATCAT+TGG | + | chr7.4:3952804-3952823 | MS.gene054442:CDS | 50.0% |
| ! | GGGCATTGTACTTGAAACGC+TGG | - | chr7.4:3953850-3953869 | None:intergenic | 50.0% |
| !! | GTTGCTCTCATCGACTCACT+TGG | + | chr7.4:3952756-3952775 | MS.gene054442:CDS | 50.0% |
| AGCCAAGAGCAGCAATCTGG+TGG | - | chr7.4:3952632-3952651 | None:intergenic | 55.0% | |
| ATTGCTGCTCTTGGCTCCCT+CGG | + | chr7.4:3952636-3952655 | MS.gene054442:CDS | 55.0% | |
| CAACAACCAAGAAGCTGCCG+AGG | + | chr7.4:3954741-3954760 | MS.gene054442:CDS | 55.0% | |
| CGGGTTCCTGTCACATGGAT+TGG | - | chr7.4:3953713-3953732 | None:intergenic | 55.0% | |
| CTTGTGAGAGCCAAGAAGGG+AGG | - | chr7.4:3953872-3953891 | None:intergenic | 55.0% | |
| GAGCAACAGCACAGTAACCG+AGG | - | chr7.4:3952656-3952675 | None:intergenic | 55.0% | |
| GCTCCAGATCTCCGTGGTTA+CGG | + | chr7.4:3952672-3952691 | MS.gene054442:CDS | 55.0% | |
| GTACAATGCCCCTCCCTTCT+TGG | + | chr7.4:3953859-3953878 | MS.gene054442:CDS | 55.0% | |
| GTGACAGGAACCCGGGAAAA+TGG | + | chr7.4:3953719-3953738 | MS.gene054442:intron | 55.0% | |
| TGTGAGAGCCAAGAAGGGAG+GGG | - | chr7.4:3953870-3953889 | None:intergenic | 55.0% | |
| TTCTCCATGACCGAGAGGGT+TGG | - | chr7.4:3954074-3954093 | None:intergenic | 55.0% | |
| TTTCCCGGGTTCCTGTCACA+TGG | - | chr7.4:3953718-3953737 | None:intergenic | 55.0% | |
| !! | CGCCAAGAGTACCAGAGTTC+AGG | - | chr7.4:3952609-3952628 | None:intergenic | 55.0% |
| ATTGGGAGCTCACGGCAGCA+TGG | + | chr7.4:3954560-3954579 | MS.gene054442:CDS | 60.0% | |
| CGCCACCAGATTGCTGCTCT+TGG | + | chr7.4:3952627-3952646 | MS.gene054442:CDS | 60.0% | |
| GACCGAGAGGGTTGGAACCT+TGG | - | chr7.4:3954066-3954085 | None:intergenic | 60.0% | |
| GCTGTTGCTCCAGATCTCCG+TGG | + | chr7.4:3952666-3952685 | MS.gene054442:CDS | 60.0% | |
| GGGAGCCAAGAGCAGCAATC+TGG | - | chr7.4:3952635-3952654 | None:intergenic | 60.0% | |
| GGTTCCAACCCTCTCGGTCA+TGG | + | chr7.4:3954067-3954086 | MS.gene054442:intron | 60.0% | |
| TCGCCGTAACCACGGAGATC+TGG | - | chr7.4:3952678-3952697 | None:intergenic | 60.0% | |
| ! | TTGGACAGGATTGGTGGCCC+AGG | - | chr7.4:3953807-3953826 | None:intergenic | 60.0% |
| !! | CATCGGTGTCGCCGTAACCA+CGG | - | chr7.4:3952686-3952705 | None:intergenic | 60.0% |
| GAGCTCACGGCAGCATGGAC+CGG | + | chr7.4:3954565-3954584 | MS.gene054442:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 3952504 | 3954804 | 3952504 | ID=MS.gene054442 |
| chr7.4 | mRNA | 3952504 | 3954804 | 3952504 | ID=MS.gene054442.t1;Parent=MS.gene054442 |
| chr7.4 | exon | 3952504 | 3952971 | 3952504 | ID=MS.gene054442.t1.exon1;Parent=MS.gene054442.t1 |
| chr7.4 | CDS | 3952504 | 3952971 | 3952504 | ID=cds.MS.gene054442.t1;Parent=MS.gene054442.t1 |
| chr7.4 | exon | 3953726 | 3953970 | 3953726 | ID=MS.gene054442.t1.exon2;Parent=MS.gene054442.t1 |
| chr7.4 | CDS | 3953726 | 3953970 | 3953726 | ID=cds.MS.gene054442.t1;Parent=MS.gene054442.t1 |
| chr7.4 | exon | 3954558 | 3954804 | 3954558 | ID=MS.gene054442.t1.exon3;Parent=MS.gene054442.t1 |
| chr7.4 | CDS | 3954558 | 3954804 | 3954558 | ID=cds.MS.gene054442.t1;Parent=MS.gene054442.t1 |
| Gene Sequence |
| Protein sequence |
