AlfalfaGEDB | MS.gene89027

M. sativa cultivar XinJiangDaYe / MS.gene89027

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene89027.t1	XP_003597891.1	99.3	147	1	0	1	147	1	147	3.40E-78	300.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene89027.t1	C0HLF1	31.9	144	96	2	1	142	1	144	3.2e-16	86.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene89027.t1	Q2HUA7	99.3	147	1	0	1	147	1	147	2.5e-78	300.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049140	MS.gene89027	0.828543	8.48E-55	-1.69E-46
MS.gene049580	MS.gene89027	0.861215	1.20E-63	-1.69E-46
MS.gene050277	MS.gene89027	0.881048	3.32E-70	-1.69E-46
MS.gene050288	MS.gene89027	0.814017	1.91E-51	-1.69E-46
MS.gene050320	MS.gene89027	0.859583	3.74E-63	-1.69E-46
MS.gene050437	MS.gene89027	0.809185	2.14E-50	-1.69E-46
MS.gene050752	MS.gene89027	0.860683	1.74E-63	-1.69E-46
MS.gene050838	MS.gene89027	0.844237	8.56E-59	-1.69E-46
MS.gene050955	MS.gene89027	0.848669	5.29E-60	-1.69E-46
MS.gene051003	MS.gene89027	0.803971	2.70E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene89027.t1	MTR_2g103690	99.320	147	1	0	1	147	1	147	5.07e-106	298

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene89027.t1	AT1G15370	87.671	146	18	0	1	146	1	146	1.32e-93	267

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Find 36 sgRNAs with CRISPR-Local

Find 281 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGGAATATGATCCTTG+CGG	0.685453	2.4:+1894292	None:intergenic
AAATTCTTCCATACTTATCA+AGG	0.445192	2.4:-1898473	None:intergenic
AAGGAAACGGCGCTCAGTTG+GGG	0.501938	2.4:-1898454	None:intergenic
ACATACATCCTTTACAGCTG+AGG	0.624977	2.4:-1898424	None:intergenic
ACTAGGAGCTGATAATCTTA+AGG	0.380283	2.4:+1896483	MS.gene89027:CDS
AGATGTCAGTATATACGTTG+TGG	0.591952	2.4:+1897154	MS.gene89027:CDS
AGGAAACGGCGCTCAGTTGG+GGG	0.618275	2.4:-1898453	None:intergenic
AGGGCAATATCCTCATCGAA+CGG	0.685734	2.4:+1894333	MS.gene89027:CDS
AGTGTACTCACCGTTCGATG+AGG	0.647564	2.4:-1894343	None:intergenic
ATAGAATCAAGAGATTGATA+AGG	0.521125	2.4:+1899028	MS.gene89027:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAATATCCGACCTTGTT+TGG	+	chr2.4:1895461-1895480	MS.gene89027:intron	30.0%
AAAATCCATATCACATGTAG+GGG	+	chr2.4:1895383-1895402	MS.gene89027:intron	30.0%
AACATTCAAACACAAACCAA+AGG	+	chr2.4:1895066-1895085	MS.gene89027:intron	30.0%
AACTTTATCTGATTCTGAAC+TGG	+	chr2.4:1896639-1896658	MS.gene89027:intron	30.0%
AATATAATCAACACATCAGG+AGG	-	chr2.4:1897730-1897749	None:intergenic	30.0%
AATTCATTGCTAAACGAGAA+TGG	-	chr2.4:1897983-1898002	None:intergenic	30.0%
AATTCTATTTGCAAGGTTAG+TGG	+	chr2.4:1896688-1896707	MS.gene89027:intron	30.0%
AGAGAAGCTTGCAAAAATTA+AGG	-	chr2.4:1897939-1897958	None:intergenic	30.0%
AGATGCAAAAAGATACAGAT+TGG	-	chr2.4:1898900-1898919	None:intergenic	30.0%
ATAAGTTGTTTATCCGAACA+TGG	+	chr2.4:1894704-1894723	MS.gene89027:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	1894302	1899074	1894302	ID=MS.gene89027
chr2.4	mRNA	1894302	1899074	1894302	ID=MS.gene89027.t1;Parent=MS.gene89027
chr2.4	exon	1894302	1894354	1894302	ID=MS.gene89027.t1.exon1;Parent=MS.gene89027.t1
chr2.4	CDS	1894302	1894354	1894302	ID=cds.MS.gene89027.t1;Parent=MS.gene89027.t1
chr2.4	exon	1896429	1896542	1896429	ID=MS.gene89027.t1.exon2;Parent=MS.gene89027.t1
chr2.4	CDS	1896429	1896542	1896429	ID=cds.MS.gene89027.t1;Parent=MS.gene89027.t1
chr2.4	exon	1897124	1897203	1897124	ID=MS.gene89027.t1.exon3;Parent=MS.gene89027.t1
chr2.4	CDS	1897124	1897203	1897124	ID=cds.MS.gene89027.t1;Parent=MS.gene89027.t1
chr2.4	exon	1898400	1898524	1898400	ID=MS.gene89027.t1.exon4;Parent=MS.gene89027.t1
chr2.4	CDS	1898400	1898524	1898400	ID=cds.MS.gene89027.t1;Parent=MS.gene89027.t1
chr2.4	exon	1899003	1899074	1899003	ID=MS.gene89027.t1.exon5;Parent=MS.gene89027.t1
chr2.4	CDS	1899003	1899074	1899003	ID=cds.MS.gene89027.t1;Parent=MS.gene89027.t1

Gene Sequence

>MS.gene89027

ATGATCCTTGCGGTGCTTTTTGCCAACGCCGAGGGCAATATCCTCATCGAACGGTGAGTACACTCCGATCTCTCTCTGATCTATATATTCTAATTCAAAATTAATTTCCTCATTTTATCATCTTTTTATTCATTTCATTTTTAATTTTCAGCGTTTTCTTTGATCTGGATTCTGTTTGAAATTTTGATTATATTGGTTTAGCTTGATTTTTAATAGGATTACACTAACACGCTTGTTATTTCCCTAAATCTTAAGTTGTTTTCATAACTTGATTCAGCTTATTTTCATAAGCTCTTCAAGATAGTTTGTCAAAACAGCTTATACCAAAACAATTCCACTTCATTTTATCTTTTGTTATTAAAACAGCTTATACATAAGCGCCTATCATGGTTAAGCTGCAAAATAAGTTGTTTATCCGAACATGGCTTTGATAAAGCCTAGGTAAAGCGCACTAGACTTGGAGATTCGTGCATCCTCTCGGAGAGGGACAAACTCTCTCGCTTGTTAGTCAAGCTTTGAAGGTGCCGCGGCAATGTAAGCTGCAAGCTTAGGCTTTCTCCGGTCAGCTGATATAGACTCCCCATTTGCACTTCTTTGTAAGTTGTTGCTTTGCTTCCAAGAATAAGAATAGAGTTCCACTTAAGCTAAGTTGCGAACTCGAACTGAATCCGAATCTAAGTTCTCTCAGATAGGCGTTTAGTGATCTCGAGAATCAGTATAGTGATCTCGAGAAGAAGTTTTGCTTCTTCTTGTCAAATGTAAGAAACATTCAAACACAAACCAAAGGTATTTTATTAAAGCTTCTGATTTCTCTTTAATCAGATTGAGGGGTTCAGCCCGTTCATTTCTAGTGTTTCATGTTTCAATTTCCAGTGATACAATAAATATCAGAGAATACACTATGGAATTTTTTTTTTTGTTTTGAAAACTCGGCAACATTATGGAAAATTTTAAAAAATGCATTTTAAAAATAGTTTGAATAATTTTGTAAATTTTCAAAATAATGTTTCCAGTGTTTCTGAAAATGCATTCTCCCTAGGTAGCTTCTATCTTTTCTCTATCGCAATTAAAAGGGAAAATCAAAATCCATATCACATGTAGGGGTGTAAGCGGTTCGGACTAAACCAATGAAACCGATAGTCTAAACCGGACCAAACCGAAAAAATATCCGACCTTGTTTGGTTCGGTTTGAAACCGATCCGAACCAATTGAAACCAGTCTAGTTTGGTTTGGTTCATGGTTTTTCATTTTGAGATCCGTGAAACCGATGAACCAATCCGATGATAACCACACTCCTTACTTTACTAATATTATCCTACCTCACACAAACTTATGGTTAGACTCAAAATTAAAGTCCAACATAAAATACTGTTTAATACATTCACTTTCTCTCATCTTGGATTTAGTTTGGATGTTTTTTTTAATTTCATGGAGAGCATAATTTCATGATGTTTAAATTTCAGGATGTTTTAATTTCAGTTTGCATGGATTTGTTATTTTGACTATGTTTTAATTTTGGGATGTTCTTTTTGGAAGTTTTGTGTTTGTTGATGAATGATGCATGTATGGATCATGGATGATTGAAATATTTGAGTTTGATGAAGTTGTTTTTAAAGAATGATTGATGAATGAATCTTGGATCATATGTATGAAATATTGAGTAAGATTATTTATAAAAAGTTGTTTGAAAAATAGAGTACATGAAAAAACAAAATATGAAATACAATTATACAAAGTTGTATGAAATATTTTCTAAGAATATGAACTTTTTTATTGTATTTTGTAACAAACCGATCAACCGAACCAATCCAAACCGAACCAAACCGATTAGTTTGGTTCGGTTTCTTTTTTGAAAAACAGTGGAAACCGAACCAAACCGAACCGATGAAGGTTTCATCGGTTCGGACATTTTTTTGACAGAAAACCAATCCAAACCGAACCGTTACACCCCTAATCACATGTCATTCCAGCCACTCACATACAAAGTAAAATTGAAAATGTTGTTAGAAAGTAAATGGACTTGGAACTTTTTCTTGTGTAGTTTTTCTTTCGTCAACCTGCATTGTAGAAGATACTTGGTTCCAACTTTTTGATTATCAGAACTGAGTGGATTTGTTATGATTGCAGTTTTCATGGAGTTCCTGCAGAGGAGCGCCTACACTGGCGTTCTTTCTTGGTCAAACTAGGAGCTGATAATCTTAAGGGTGTAAAAAATGAAGAACTCCTAGTTGCTTGCCACAAGTAAGTATACTGCTCTCGCCTCTCTCAAGTCATGTGTACGTGATGTATGAATGTGTATCTTACATGGATAAATTACCTTATCTAGGTGAGCACTTTAACTTTATCTGATTCTGAACTGGTCCAAGGACTAAATTTTAGTTATTAGAATTCTATTTGCAAGGTTAGTGGGCCGTTGAAATCTGTTTATATGAATGATTATCGATTCAGTGCTATGATAGTGATAGACTTTGCACAGTTTGCATTTTGAATTTTTGTGATGCAAGTAGATGAGAACAAAGTGAATAACATTAGTTGATTACTAAGATATTTCAAATAGTATTATCATTAATGAAAAATTTGGAAAAGAGTTGTGGAAATGGAAGCTAAAAACTGACATGTGAACTTGTCCCATCAAAAATCAGTAACAGATACAAGATTGTGGAATAAAAGAAAAACTTTTTTGCTTCACTGCTAAATGCTAATTATTGTTCATTAATATGCCTTCATTTTTGAAAATTATGTCTCATTCATATGTGATGATTCAGTTTCCCTTTTAGTAAACAGTGATTTATTATTTTACTTCTACTTCTTATCTTTATCAGGTCAGTCTATATTGTATACACAGTACTTGGAGATGTCAGTATATACGTTGTGGGGAAGGACGCGTACGATGAACTTGCTTGTATGTATTCTATGAACCAATCTTTTTTATTTGATGACAGTAAATGGTAAAATAAAAGCAAACAAATTACTCATCTCAGTTGTTGATGTTTTAATATAAAATTGCACAATATTTTGTACTTGCTGATAGTAAAATAAAACATATAAATCAATCATCTAAGTTGTTGATGCTTGAAAGTTGATTTGCTTGCTATTTTTAGATTGAATTTTGATAACAACCCTGTATCCTATTAGAAATAAATAGGGACAAACCCCAATTACAAAGATAGAATACTACAGAACTTCGGAGTCTTCATCTGCTTATACCCAAAGTCCCCAATTCTCTCTTAAATAACAAGATATCACTCCCTCTCGACCACTCTTGTTATTTATAGGCAACATCTTTATTTCTTCTATTTATCTCAACCCAACTACCTAACCTTGTTACCAACAGCCCTTTCATCAACAATGTAGGTTCTACATTATTTGCGTGTCCTTGTCTGCAGTTCTGATTATTGGATCTCATCTTTTAGACATCAATTCTACCTCCTGATGTGTTGATTATATTTTGTTGGCTAATCAACCAAGTTTGATTCTTCTCTGTTATTGTTGTGCCTAGCACCTGTGGCTTTGCTTCTCCTCATGCTGTCAATTGGGTTCCCTAGAATCTTGTCCATCCTGCACAATATTTCCCATACCATAAAACTAGCGTCCATCCACAACACTGTTGCTCTGTTTCCTTTTCGATCTATTGCCTTAATTTTTGCAAGCTTCTCTTTGTAGCATCCCCTCAATCCACCATTCTCGTTTAGCAATGAATTGCTCCCTAGAAAAGATGATAAACTAGCTATTAAAGGATACTCTTGCGGTGTTGAAAATATGGCATTGCATCTTAAATAATGTAGTTAGAAAAGCTAGCTATCAGGTGAACTAGTAGGGGTATATCTTAGAATCTAACTAAACTTAGCAGACAATTTTGTCTGACTTTCCAAGAATAGTATACATATTTAATCAAAAAACGAGGTTGTTCGTTCATATTGTGATTTGATGGTATCAACATTCATAACTATGCCAATTGCCGAGTGACTCAAGCATATTGTTATTTCACCAAGGGTTTGAAATTGCAATTTGGAAAAACCTATATGTTCGTAAGCTGTCAAGAACTTTCATAATTTTACATTGATAGTACTAATTTACAAATGTTTTGTTTTTCTCCAGTGTCGGAGGTTATCTTTACAATAACCTCAGCTGTAAAGGATGTATGTGGGAAGCCCCCAACTGAGCGCCGTTTCCTTGATAAGTATGGAAGAATTTGCTTGTGTTTGGATGAAATTGTATGGAAGGTGAGAAGACATGCCGGACAATGTTTAGTAAAAGATCACAGCTCGCTTTTGAAAATTTTCAGTTTACCCATTCATTTTACTTACCTTAGAGAAACATCATTTTATGACATTCACAATTGTATATGCATCTATCTAGTTATTATAAATATTGTTATTTGCTGTTTAATTATTTTTCACAAGACTCATTACGTATTCACGTCAGTGATTATCTTTTGCTACTCAATTCACTTGAAACGATACTCCGTCTTATTTGAATAAATTTAAACTGAAGCAAATATCAAAATGCTACTAAAAATAGACAAGTTTTCCCCATATTTTCATGCAAAACTTGGTTGCGACTTTTTGTCTCTGTTCACTACACACACTACTGATCCAATCTGTATCTTTTTGCATCTTATGTACTCCTCTGTTCCATTGTTGCGAAAGAGGAGTTTCTTCTTGATGTTGTGCTTACATTTTCCCTGTATTTCTTTTGAAGGGATATCTGGAAAATACGGAAAAAGATAGAATCAAGAGATTGATAAGGTTGAAGCCTCCTACTGAGTTTTGA

Protein sequence

>MS.gene89027.t1

MILAVLFANAEGNILIERFHGVPAEERLHWRSFLVKLGADNLKGVKNEELLVACHKSVYIVYTVLGDVSIYVVGKDAYDELALSEVIFTITSAVKDVCGKPPTERRFLDKYGRICLCLDEIVWKGYLENTEKDRIKRLIRLKPPTEF