Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29053.t1 | XP_003601104.1 | 92.1 | 1018 | 71 | 2 | 1 | 1011 | 1 | 1016 | 0.00E+00 | 1550.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29053.t1 | F4IUY8 | 54.3 | 820 | 311 | 12 | 196 | 1008 | 243 | 1005 | 6.8e-219 | 762.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29053.t1 | G7J3M1 | 92.1 | 1018 | 71 | 2 | 1 | 1011 | 1 | 1016 | 0.0e+00 | 1550.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04915 | MS.gene29053 | -0.81493 | 1.20E-51 | -1.69E-46 |
| MS.gene04917 | MS.gene29053 | -0.810573 | 1.08E-50 | -1.69E-46 |
| MS.gene049887 | MS.gene29053 | -0.802042 | 6.77E-49 | -1.69E-46 |
| MS.gene050277 | MS.gene29053 | -0.816958 | 4.23E-52 | -1.69E-46 |
| MS.gene050320 | MS.gene29053 | -0.808849 | 2.53E-50 | -1.69E-46 |
| MS.gene050752 | MS.gene29053 | -0.808391 | 3.17E-50 | -1.69E-46 |
| MS.gene050838 | MS.gene29053 | -0.838069 | 3.58E-57 | -1.69E-46 |
| MS.gene051233 | MS.gene29053 | -0.815736 | 7.94E-52 | -1.69E-46 |
| MS.gene051633 | MS.gene29053 | -0.802081 | 6.64E-49 | -1.69E-46 |
| MS.gene051687 | MS.gene29053 | -0.800919 | 1.15E-48 | -1.69E-46 |
| MS.gene051746 | MS.gene29053 | -0.844543 | 7.08E-59 | -1.69E-46 |
| MS.gene051748 | MS.gene29053 | -0.854829 | 9.48E-62 | -1.69E-46 |
| MS.gene051756 | MS.gene29053 | -0.836842 | 7.38E-57 | -1.69E-46 |
| MS.gene051757 | MS.gene29053 | -0.811201 | 7.88E-51 | -1.69E-46 |
| MS.gene051850 | MS.gene29053 | -0.81034 | 1.21E-50 | -1.69E-46 |
| MS.gene051903 | MS.gene29053 | -0.877678 | 5.18E-69 | -1.69E-46 |
| MS.gene052302 | MS.gene29053 | -0.829155 | 6.03E-55 | -1.69E-46 |
| MS.gene052376 | MS.gene29053 | -0.810406 | 1.17E-50 | -1.69E-46 |
| MS.gene052818 | MS.gene29053 | 0.833648 | 4.73E-56 | -1.69E-46 |
| MS.gene052947 | MS.gene29053 | -0.81875 | 1.67E-52 | -1.69E-46 |
| MS.gene05344 | MS.gene29053 | 0.813642 | 2.31E-51 | -1.69E-46 |
| MS.gene053952 | MS.gene29053 | -0.815815 | 7.62E-52 | -1.69E-46 |
| MS.gene054403 | MS.gene29053 | -0.808092 | 3.67E-50 | -1.69E-46 |
| MS.gene054699 | MS.gene29053 | -0.821095 | 4.85E-53 | -1.69E-46 |
| MS.gene055174 | MS.gene29053 | -0.824247 | 8.95E-54 | -1.69E-46 |
| MS.gene055424 | MS.gene29053 | -0.824963 | 6.07E-54 | -1.69E-46 |
| MS.gene055591 | MS.gene29053 | 0.831355 | 1.75E-55 | -1.69E-46 |
| MS.gene056830 | MS.gene29053 | 0.859081 | 5.29E-63 | -1.69E-46 |
| MS.gene057057 | MS.gene29053 | -0.815607 | 8.48E-52 | -1.69E-46 |
| MS.gene057094 | MS.gene29053 | -0.84306 | 1.77E-58 | -1.69E-46 |
| MS.gene057234 | MS.gene29053 | -0.844899 | 5.68E-59 | -1.69E-46 |
| MS.gene057452 | MS.gene29053 | 0.823487 | 1.35E-53 | -1.69E-46 |
| MS.gene057705 | MS.gene29053 | -0.812791 | 3.55E-51 | -1.69E-46 |
| MS.gene058055 | MS.gene29053 | -0.811724 | 6.07E-51 | -1.69E-46 |
| MS.gene058074 | MS.gene29053 | -0.821272 | 4.41E-53 | -1.69E-46 |
| MS.gene058238 | MS.gene29053 | -0.850911 | 1.25E-60 | -1.69E-46 |
| MS.gene058661 | MS.gene29053 | 0.8267 | 2.35E-54 | -1.69E-46 |
| MS.gene058906 | MS.gene29053 | -0.815487 | 9.01E-52 | -1.69E-46 |
| MS.gene05904 | MS.gene29053 | 0.825321 | 5.00E-54 | -1.69E-46 |
| MS.gene059872 | MS.gene29053 | 0.813143 | 2.97E-51 | -1.69E-46 |
| MS.gene06001 | MS.gene29053 | -0.847766 | 9.40E-60 | -1.69E-46 |
| MS.gene06011 | MS.gene29053 | -0.80643 | 8.26E-50 | -1.69E-46 |
| MS.gene060463 | MS.gene29053 | -0.80142 | 9.08E-49 | -1.69E-46 |
| MS.gene060465 | MS.gene29053 | -0.807514 | 4.87E-50 | -1.69E-46 |
| MS.gene060563 | MS.gene29053 | -0.802942 | 4.42E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29053.t1 | MTR_3g073080 | 97.446 | 1018 | 17 | 2 | 1 | 1011 | 1 | 1016 | 0.0 | 2038 |
| MS.gene29053.t1 | MTR_3g073080 | 97.852 | 745 | 9 | 1 | 274 | 1011 | 8 | 752 | 0.0 | 1515 |
| MS.gene29053.t1 | MTR_3g073080 | 98.358 | 548 | 9 | 0 | 464 | 1011 | 1 | 548 | 0.0 | 1131 |
| MS.gene29053.t1 | MTR_1g115940 | 49.686 | 159 | 40 | 5 | 841 | 966 | 1 | 152 | 2.41e-36 | 135 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29053.t1 | AT2G39340 | 53.921 | 1033 | 386 | 23 | 2 | 1008 | 37 | 1005 | 0.0 | 957 |
Find 249 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTGGTAATTCATCAAATT+TGG | 0.051963 | 3.4:+71989023 | MS.gene29053:CDS |
| TCCTGCTGTGCCGCCTTTAC+AGG | 0.137684 | 3.4:+71989674 | MS.gene29053:CDS |
| GTACCCTATGCACACGTAAT+TGG | 0.176540 | 3.4:+71993206 | MS.gene29053:CDS |
| CGTTCTAAGCGATTTGATTT+AGG | 0.215889 | 3.4:+71995930 | MS.gene29053:CDS |
| TTCTTCTTATGATAAATTTC+AGG | 0.216493 | 3.4:+71990141 | MS.gene29053:CDS |
| ATTTCCTCCTTTCAGAATAC+TGG | 0.222746 | 3.4:+71989228 | MS.gene29053:CDS |
| TCCAAATGACTTTGATAGTT+TGG | 0.223926 | 3.4:-71990112 | None:intergenic |
| CACAATCATATCCACAATAT+TGG | 0.236437 | 3.4:+71989634 | MS.gene29053:CDS |
| CTTACAAAGTGCTCCATCTT+TGG | 0.247433 | 3.4:+71990258 | MS.gene29053:CDS |
| CTCGATATTCTCTGAAATAA+TGG | 0.250084 | 3.4:-71995738 | None:intergenic |
| GAACTTAAACACCTGCCTTA+TGG | 0.252251 | 3.4:+71998980 | MS.gene29053:CDS |
| GATGAATTTGAGAACTAGTT+TGG | 0.252769 | 3.4:-71990051 | None:intergenic |
| TCAGTGCCAATCTCAGTTAA+AGG | 0.258907 | 3.4:+71997988 | MS.gene29053:intron |
| AACTTAAACACCTGCCTTAT+GGG | 0.259233 | 3.4:+71998981 | MS.gene29053:CDS |
| CTGCTTCTTAAATGGCCTTT+GGG | 0.260755 | 3.4:-71995769 | None:intergenic |
| TTGCGTATCCGTTGCTGTTT+TGG | 0.287700 | 3.4:-71989323 | None:intergenic |
| GTAGTACCTTGACTGTTAAT+TGG | 0.288051 | 3.4:-71996404 | None:intergenic |
| CCCGGTTGGCACTGGAAGTT+GGG | 0.289514 | 3.4:+71996765 | MS.gene29053:CDS |
| GCGGCTGCGGCTGCGGATGC+TGG | 0.296808 | 3.4:-71988960 | None:intergenic |
| GCAAGACGCTGCTTCTTAAA+TGG | 0.300355 | 3.4:-71995777 | None:intergenic |
| CTTTGATAGTTTGGTTGAAT+AGG | 0.300385 | 3.4:-71990103 | None:intergenic |
| TTAACTGGTCACATTTATAA+AGG | 0.309288 | 3.4:-71996341 | None:intergenic |
| CCGTGGGCCACAGCATCTTC+TGG | 0.309619 | 3.4:-71999624 | None:intergenic |
| GTTTCTACTGCTCATGAAAA+TGG | 0.311872 | 3.4:+71995804 | MS.gene29053:CDS |
| ATTTATAAAGGTAATTCCTT+TGG | 0.313444 | 3.4:-71996329 | None:intergenic |
| GTCCCAAGTTCATCTACTTT+GGG | 0.314090 | 3.4:+71989546 | MS.gene29053:CDS |
| GCTGGTAATTCATCAAATTT+GGG | 0.328650 | 3.4:+71989024 | MS.gene29053:CDS |
| ACCAAACTATCAAAGTCATT+TGG | 0.335372 | 3.4:+71990111 | MS.gene29053:CDS |
| CGGGATCTGGCGCCGATGTT+AGG | 0.338007 | 3.4:-71996148 | None:intergenic |
| TCTGCATCTGCCTCCGGCAT+TGG | 0.339714 | 3.4:-71993247 | None:intergenic |
| TTGGTTGAATAGGATTAGTT+TGG | 0.345571 | 3.4:-71990093 | None:intergenic |
| CTGCATCTGCCTCCGGCATT+GGG | 0.356862 | 3.4:-71993246 | None:intergenic |
| TTTATAAAGGTAATTCCTTT+GGG | 0.360413 | 3.4:-71996328 | None:intergenic |
| CCTACGGGCGGCTGCGGCTG+CGG | 0.360451 | 3.4:-71988967 | None:intergenic |
| TCTTCTAATCCATATGGTTA+TGG | 0.361279 | 3.4:+71989096 | MS.gene29053:CDS |
| TGTCCCAAGTTCATCTACTT+TGG | 0.362411 | 3.4:+71989545 | MS.gene29053:CDS |
| CTGGTTCTGAAGCCGTTTCA+TGG | 0.363728 | 3.4:+71988881 | MS.gene29053:CDS |
| GCTGCTTCTTAAATGGCCTT+TGG | 0.363898 | 3.4:-71995770 | None:intergenic |
| TCCTACGTATCTCAGGTTCT+AGG | 0.367060 | 3.4:+71999156 | MS.gene29053:CDS |
| ACAGACAAGTTCTCTGTCCC+TGG | 0.368424 | 3.4:-71989525 | None:intergenic |
| GTATTCTGAAAGGAGGAAAT+AGG | 0.369237 | 3.4:-71989225 | None:intergenic |
| ATGCACACGTAATTGGGATA+TGG | 0.369705 | 3.4:+71993213 | MS.gene29053:CDS |
| CTTGGCGAATAGACTTTAAC+TGG | 0.370716 | 3.4:-71996356 | None:intergenic |
| GCCCGGTTGGCACTGGAAGT+TGG | 0.378623 | 3.4:+71996764 | MS.gene29053:CDS |
| AGGGATCGAAGGCTCGTATA+TGG | 0.383381 | 3.4:+71998024 | MS.gene29053:CDS |
| ATGAATTTGAGAACTAGTTT+GGG | 0.391251 | 3.4:-71990050 | None:intergenic |
| ACAATCATATCCACAATATT+GGG | 0.394547 | 3.4:+71989635 | MS.gene29053:CDS |
| TACCCTATGCACACGTAATT+GGG | 0.398034 | 3.4:+71993207 | MS.gene29053:CDS |
| TGTGTATTCGTTGCACAGTT+AGG | 0.398571 | 3.4:-71996380 | None:intergenic |
| CCCCAACTTCCAGTGCCAAC+CGG | 0.400824 | 3.4:-71996766 | None:intergenic |
| GATATTACGGTGGCGGGATC+TGG | 0.401090 | 3.4:-71996161 | None:intergenic |
| TTCGTTGCACAGTTAGGTCT+TGG | 0.401797 | 3.4:-71996374 | None:intergenic |
| GGGCACAACTGACTTCTGTT+TGG | 0.402893 | 3.4:-71989503 | None:intergenic |
| GTGGTGGTCATGATGATTAC+TGG | 0.404253 | 3.4:+71990017 | MS.gene29053:CDS |
| ACCTGTAAAGGCGGCACAGC+AGG | 0.410044 | 3.4:-71989675 | None:intergenic |
| CAAAGATGGAGCACTTTGTA+AGG | 0.411359 | 3.4:-71990257 | None:intergenic |
| GCAAATTCTTCTAATCCATA+TGG | 0.411362 | 3.4:+71989090 | MS.gene29053:CDS |
| TGAGAAAGAGGCCACTGCTT+TGG | 0.411832 | 3.4:+71999215 | MS.gene29053:CDS |
| AAAGAGCCTTTAACTGAGAT+TGG | 0.414274 | 3.4:-71997994 | None:intergenic |
| GCCACAGCATCTTCTGGCTC+TGG | 0.417167 | 3.4:-71999618 | None:intergenic |
| GCTGCGGATGCTGGTCATAC+TGG | 0.421733 | 3.4:-71988951 | None:intergenic |
| TTTATTGCAACCATGACATC+TGG | 0.422025 | 3.4:+71988862 | None:intergenic |
| CAACAGAAGGGCTAGTGCTC+TGG | 0.424865 | 3.4:+71996016 | MS.gene29053:CDS |
| TGCTGCTAATTCAATACTTA+AGG | 0.425260 | 3.4:+71990453 | MS.gene29053:CDS |
| CTTCAGTGCTGCACTGGATG+TGG | 0.425420 | 3.4:-71990374 | None:intergenic |
| AAGCTAACCTGATTATATTC+AGG | 0.427569 | 3.4:-71996794 | None:intergenic |
| GTCAAATTTGAAGCAATTCG+AGG | 0.427572 | 3.4:-71990319 | None:intergenic |
| ATCAGCCACAATACAATCAA+TGG | 0.427782 | 3.4:+71989466 | MS.gene29053:CDS |
| CTTAGCAAAAGCTTTGATAA+TGG | 0.428213 | 3.4:+71996041 | MS.gene29053:CDS |
| ACCGGCTTCTCCTCTGGTAA+TGG | 0.429110 | 3.4:-71994118 | None:intergenic |
| AACTCATGCCCGGTTGGCAC+TGG | 0.434911 | 3.4:+71996757 | MS.gene29053:CDS |
| TTCACCTTGCCATTGATGAT+AGG | 0.435816 | 3.4:-71998105 | None:intergenic |
| GCAGGAGCAGGAGCAGGAAC+AGG | 0.436399 | 3.4:-71989573 | None:intergenic |
| GTTCGTGCAGCTGTAACTTC+AGG | 0.440910 | 3.4:+71998918 | MS.gene29053:CDS |
| AACATAGCCACGCAAAGACT+TGG | 0.445716 | 3.4:-71991822 | None:intergenic |
| GACACAGGATGATGGTTAAC+CGG | 0.448056 | 3.4:-71994199 | None:intergenic |
| TTATTGTCTGCATCTGCCTC+CGG | 0.449792 | 3.4:-71993253 | None:intergenic |
| AGGAAGAGGGAAGTACAAAT+TGG | 0.449984 | 3.4:-71990197 | None:intergenic |
| TGGGATGCTCTTACTGTAAA+GGG | 0.453003 | 3.4:+71996092 | MS.gene29053:CDS |
| GAAGCAATTCGAGGATTTGT+TGG | 0.453082 | 3.4:-71990310 | None:intergenic |
| CAAAGACTTGGGAAACATAC+CGG | 0.453318 | 3.4:-71991810 | None:intergenic |
| ATACTGTAAAATACAGTAGT+TGG | 0.455481 | 3.4:+71994170 | MS.gene29053:CDS |
| ATACTGTAAAATACAGTAGT+TGG | 0.455481 | 3.4:+71994233 | MS.gene29053:CDS |
| TGGCTATGTTGAAAGAGCTT+TGG | 0.455514 | 3.4:+71991835 | MS.gene29053:CDS |
| AGGCGGCACAGCAGGAGTGC+TGG | 0.456913 | 3.4:-71989667 | None:intergenic |
| GGCTGAGAATAAGCAGGATT+AGG | 0.457090 | 3.4:-71989165 | None:intergenic |
| ATTGTTATCAGCAATTATAC+TGG | 0.462204 | 3.4:-71999271 | None:intergenic |
| GACACAGGATGATGGTCAAC+CGG | 0.463264 | 3.4:-71994136 | None:intergenic |
| ATAAGGCAGGTGTTTAAGTT+CGG | 0.463914 | 3.4:-71998978 | None:intergenic |
| TAAGCAAATGGCAGCATGCC+AGG | 0.464128 | 3.4:+71991874 | MS.gene29053:CDS |
| CAACCCAAAGTAGATGAACT+TGG | 0.465843 | 3.4:-71989549 | None:intergenic |
| CAGAATACTGGGTCTAATGC+TGG | 0.466623 | 3.4:+71989240 | MS.gene29053:CDS |
| AGCAGGCTTCAGTGCTGCAC+TGG | 0.467043 | 3.4:-71990380 | None:intergenic |
| TCCAGTAGCTCTTATAGTAC+TGG | 0.469410 | 3.4:+71989420 | MS.gene29053:CDS |
| TGGTCAACCGGCTTCTCCTC+TGG | 0.472769 | 3.4:-71994124 | None:intergenic |
| ACCATCTTGAACGCTTCCTA+CGG | 0.473101 | 3.4:-71988983 | None:intergenic |
| ACCAGTACTATAAGAGCTAC+TGG | 0.473490 | 3.4:-71989421 | None:intergenic |
| TTTCCTCCTTTCAGAATACT+GGG | 0.474082 | 3.4:+71989229 | MS.gene29053:CDS |
| GAATGGCATGCAGGTGGTAG+TGG | 0.477039 | 3.4:+71995668 | MS.gene29053:intron |
| AAAATCATTAACAGCAAGGT+TGG | 0.480465 | 3.4:-71999652 | None:intergenic |
| CTGGGATGCTCTTACTGTAA+AGG | 0.481316 | 3.4:+71996091 | MS.gene29053:CDS |
| ACCTGAGATACGTAGGAAAC+GGG | 0.485335 | 3.4:-71999150 | None:intergenic |
| TACTGTAAAGGGTACCTGCC+AGG | 0.488396 | 3.4:+71996103 | MS.gene29053:CDS |
| GCCTAATGAAAAGGATAGAA+AGG | 0.490421 | 3.4:+71994258 | MS.gene29053:CDS |
| AACCTGAGATACGTAGGAAA+CGG | 0.491900 | 3.4:-71999151 | None:intergenic |
| CCACTAGTAGCTGCAGGAGC+AGG | 0.492394 | 3.4:-71989585 | None:intergenic |
| ACTTTGGCAATACAGAATCA+TGG | 0.492394 | 3.4:-71994057 | None:intergenic |
| CCGCAGCCGCAGCCGCCCGT+AGG | 0.495074 | 3.4:+71988967 | MS.gene29053:CDS |
| TTAAAGGCTCTTTATGCTGA+AGG | 0.495998 | 3.4:+71998004 | MS.gene29053:CDS |
| AAGGAGGAAATAGGCTGATA+AGG | 0.496384 | 3.4:-71989216 | None:intergenic |
| ACCCGTTTCCTACGTATCTC+AGG | 0.496736 | 3.4:+71999149 | MS.gene29053:CDS |
| ACAGAAGTCAGTTGTGCCCC+AGG | 0.496956 | 3.4:+71989507 | MS.gene29053:CDS |
| CCCGTGCTGCCATAACCATA+TGG | 0.497830 | 3.4:-71989105 | None:intergenic |
| TGAAGCAAATGATGAGAAAG+AGG | 0.498622 | 3.4:+71999203 | MS.gene29053:CDS |
| TTTATCAATACTAACCCATA+AGG | 0.501651 | 3.4:-71998995 | None:intergenic |
| TCTGTGGCGTAACTTGTATA+CGG | 0.502129 | 3.4:-71989396 | None:intergenic |
| GGACCTGCCTGAATATAATC+AGG | 0.505112 | 3.4:+71996787 | MS.gene29053:CDS |
| ACGCTTCCTACGGGCGGCTG+CGG | 0.508637 | 3.4:-71988973 | None:intergenic |
| CCCAACTTCCAGTGCCAACC+GGG | 0.510017 | 3.4:-71996765 | None:intergenic |
| GTAGGAGCATATCAAAATAC+AGG | 0.512154 | 3.4:+71989189 | MS.gene29053:CDS |
| TGAAGCTGTAAAACATGCTC+TGG | 0.512592 | 3.4:+71998893 | MS.gene29053:CDS |
| TAGTTGGGTGCCTAATGAAA+AGG | 0.512618 | 3.4:+71994249 | MS.gene29053:CDS |
| TTGTAAAGATGATAAGCAAA+TGG | 0.513557 | 3.4:+71991862 | MS.gene29053:CDS |
| GTTATCTGACGAAGCAAAGA+AGG | 0.515818 | 3.4:+71998869 | MS.gene29053:CDS |
| CCATATGGTTATGGCAGCAC+GGG | 0.516635 | 3.4:+71989105 | MS.gene29053:CDS |
| GTAGCTGCAGGAGCAGGAGC+AGG | 0.517946 | 3.4:-71989579 | None:intergenic |
| AAAGGAGATATTACGGTGGC+GGG | 0.521108 | 3.4:-71996167 | None:intergenic |
| ATCCCAATTACGTGTGCATA+GGG | 0.522319 | 3.4:-71993209 | None:intergenic |
| AGTGATATTCAAACCTGTAA+AGG | 0.522822 | 3.4:-71989687 | None:intergenic |
| TTAGATGATAGTTTCTCAGT+TGG | 0.523740 | 3.4:-71990427 | None:intergenic |
| CAGACAAGTTCTCTGTCCCT+GGG | 0.524755 | 3.4:-71989524 | None:intergenic |
| TGCATCTAGTGATAGTGATA+AGG | 0.526272 | 3.4:+71995830 | MS.gene29053:CDS |
| TACTTGTTGACACAGGATGA+TGG | 0.527108 | 3.4:-71994207 | None:intergenic |
| AATGAAACAGCAATATAAGC+AGG | 0.527678 | 3.4:-71990397 | None:intergenic |
| CCTGCATGTGCCGATCATAT+CGG | 0.528944 | 3.4:+71999118 | MS.gene29053:CDS |
| CAAAGTGTATCATCAGTTGC+TGG | 0.530028 | 3.4:+71989006 | MS.gene29053:CDS |
| CCATCTTGAACGCTTCCTAC+GGG | 0.530099 | 3.4:-71988982 | None:intergenic |
| CCACCACTATTTACTGCAGC+AGG | 0.530413 | 3.4:-71990001 | None:intergenic |
| GCTCTGAACGTTCCATGAAA+CGG | 0.532106 | 3.4:-71988893 | None:intergenic |
| CCAGAAGATGCTGTGGCCCA+CGG | 0.533746 | 3.4:+71999624 | MS.gene29053:CDS |
| TCCTTTGCAGATGATCACTA+AGG | 0.534413 | 3.4:+71993171 | MS.gene29053:intron |
| GACTCTTGCACCCAATATTG+TGG | 0.535657 | 3.4:-71989645 | None:intergenic |
| TACTTGTTGACACAGGATGA+TGG | 0.536480 | 3.4:-71994144 | None:intergenic |
| GCCATTACCAGAGGAGAAGC+CGG | 0.537479 | 3.4:+71994117 | MS.gene29053:CDS |
| TACTGTAAAATACAGTAGTT+GGG | 0.538465 | 3.4:+71994171 | MS.gene29053:CDS |
| TACTGTAAAATACAGTAGTT+GGG | 0.538465 | 3.4:+71994234 | MS.gene29053:CDS |
| CAGAGAACTCCTATCATCAA+TGG | 0.540998 | 3.4:+71998096 | MS.gene29053:CDS |
| ACGCAAATCAAGCGCCGGCA+TGG | 0.541797 | 3.4:+71989340 | MS.gene29053:CDS |
| CCGATATGATCGGCACATGC+AGG | 0.542062 | 3.4:-71999118 | None:intergenic |
| GGCGCCAGATTCACCTGTTG+AGG | 0.542468 | 3.4:-71990235 | None:intergenic |
| TGCTTCTTAAATGGCCTTTG+GGG | 0.542792 | 3.4:-71995768 | None:intergenic |
| TATCCCAATTACGTGTGCAT+AGG | 0.545696 | 3.4:-71993210 | None:intergenic |
| TCAGCCACAATACAATCAAT+GGG | 0.547636 | 3.4:+71989467 | MS.gene29053:CDS |
| GCGCCAGATTCACCTGTTGA+GGG | 0.548174 | 3.4:-71990234 | None:intergenic |
| TGCTGGTCATACTGGTAGGT+CGG | 0.548260 | 3.4:-71988943 | None:intergenic |
| ATACAGTAGTTGGGTGCCGC+CGG | 0.548866 | 3.4:+71994180 | MS.gene29053:CDS |
| TCACCTCTTTCATGACAGCC+TGG | 0.549405 | 3.4:-71991892 | None:intergenic |
| CTGGAAACTTGTACAACAGA+AGG | 0.551854 | 3.4:+71996003 | MS.gene29053:CDS |
| TGGTGTCAGCAAAGCTGTTG+AGG | 0.553579 | 3.4:+71996061 | MS.gene29053:CDS |
| TGCATATTATTCTGCTGCAA+TGG | 0.553825 | 3.4:+71995866 | MS.gene29053:CDS |
| CGGATGCTGGTCATACTGGT+AGG | 0.555373 | 3.4:-71988947 | None:intergenic |
| CCTGCTGATTATCAGACCAC+TGG | 0.555735 | 3.4:+71989294 | MS.gene29053:CDS |
| TCCATATGGTTATGGCAGCA+CGG | 0.557054 | 3.4:+71989104 | MS.gene29053:CDS |
| AAGCTGTTGAGGATATTGAC+TGG | 0.559177 | 3.4:+71996072 | MS.gene29053:CDS |
| GCCAGATTCACCTGTTGAGG+GGG | 0.559645 | 3.4:-71990232 | None:intergenic |
| TGTGGAGGCTGGTAATTTGA+AGG | 0.560594 | 3.4:-71989615 | None:intergenic |
| AGAGCAAGGAAGACAGTTGG+AGG | 0.560733 | 3.4:+71995700 | MS.gene29053:CDS |
| AAAAGGAGATATTACGGTGG+CGG | 0.561173 | 3.4:-71996168 | None:intergenic |
| CCTGCTCCTGCAGCTACTAG+TGG | 0.561241 | 3.4:+71989585 | MS.gene29053:CDS |
| CCAGTGGTCTGATAATCAGC+AGG | 0.561824 | 3.4:-71989294 | None:intergenic |
| AAGAGAGCAAGGAAGACAGT+TGG | 0.562299 | 3.4:+71995697 | MS.gene29053:CDS |
| TAACCTGATTATATTCAGGC+AGG | 0.562357 | 3.4:-71996790 | None:intergenic |
| TAAAGGCTCTTTATGCTGAA+GGG | 0.564963 | 3.4:+71998005 | MS.gene29053:CDS |
| GTGGATATGATTGTGGAGGC+TGG | 0.565484 | 3.4:-71989626 | None:intergenic |
| GCCTCCGGCATTGGGAAGAG+TGG | 0.566459 | 3.4:-71993238 | None:intergenic |
| GTCCTAGACGATCTAAAAGT+AGG | 0.569257 | 3.4:+71994089 | MS.gene29053:CDS |
| CAGCCTGCTGCAGTAAATAG+TGG | 0.570492 | 3.4:+71989998 | MS.gene29053:intron |
| GGAACCACTCTTCCCAATGC+CGG | 0.571157 | 3.4:+71993234 | MS.gene29053:CDS |
| CTTTGGAAGAGTGTTTAGAA+TGG | 0.571807 | 3.4:+71999232 | MS.gene29053:CDS |
| GCATAACCACTAGTAGCTGC+AGG | 0.571910 | 3.4:-71989591 | None:intergenic |
| GTTCAGAGCTCCACAGCGAA+TGG | 0.572983 | 3.4:+71988907 | MS.gene29053:CDS |
| CCTACAGGCTGAGAATAAGC+AGG | 0.576409 | 3.4:-71989171 | None:intergenic |
| CGGATACGCAAATCAAGCGC+CGG | 0.577868 | 3.4:+71989335 | MS.gene29053:CDS |
| GCGATACCTGCGCCTAACAT+CGG | 0.579158 | 3.4:+71996136 | MS.gene29053:CDS |
| CTGGCGCCGATGTTAGGCGC+AGG | 0.581743 | 3.4:-71996142 | None:intergenic |
| GGCTTCAGAACCAGATGTCA+TGG | 0.581974 | 3.4:-71988872 | None:intergenic |
| AGTATAATTGCTGATAACAA+TGG | 0.582252 | 3.4:+71999273 | MS.gene29053:CDS |
| CGCCAGATTCACCTGTTGAG+GGG | 0.582343 | 3.4:-71990233 | None:intergenic |
| GTACGGTTGGCCGATATGAT+CGG | 0.583535 | 3.4:-71999128 | None:intergenic |
| ATGCCAGGCTGTCATGAAAG+AGG | 0.584265 | 3.4:+71991889 | MS.gene29053:CDS |
| CAATATTGTGGATATGATTG+TGG | 0.585569 | 3.4:-71989633 | None:intergenic |
| AGGTATATGAAACTCATGCC+CGG | 0.586101 | 3.4:+71996747 | MS.gene29053:intron |
| AGCAAGGTTGGCATCTCCGT+GGG | 0.587369 | 3.4:-71999640 | None:intergenic |
| ACATAGCCACGCAAAGACTT+GGG | 0.587714 | 3.4:-71991821 | None:intergenic |
| AACTCCTATCATCAATGGCA+AGG | 0.587936 | 3.4:+71998101 | MS.gene29053:CDS |
| AAAGACTTGGGAAACATACC+GGG | 0.594352 | 3.4:-71991809 | None:intergenic |
| TAACTGTCATTGTTCCATGC+CGG | 0.594398 | 3.4:-71989354 | None:intergenic |
| TCAATACTAACCCATAAGGC+AGG | 0.596141 | 3.4:-71998991 | None:intergenic |
| AGTGGAAAACAAAGAGAGCA+AGG | 0.597172 | 3.4:+71995686 | MS.gene29053:CDS |
| CCTGCTTATTCTCAGCCTGT+AGG | 0.600180 | 3.4:+71989171 | MS.gene29053:CDS |
| CTAGACGATCTAAAAGTAGG+TGG | 0.601709 | 3.4:+71994092 | MS.gene29053:CDS |
| CTTTATGCTGAAGGGATCGA+AGG | 0.603964 | 3.4:+71998013 | MS.gene29053:CDS |
| ATATGAAACTCATGCCCGGT+TGG | 0.604591 | 3.4:+71996751 | MS.gene29053:CDS |
| GAACAGAAAATAATCACTCA+AGG | 0.611292 | 3.4:+71995964 | MS.gene29053:CDS |
| TCCGCCCATTGATTGTATTG+TGG | 0.611868 | 3.4:-71989471 | None:intergenic |
| CTCTGGCACAAATAAACTAG+AGG | 0.614360 | 3.4:-71999601 | None:intergenic |
| AACCCAAAGTAGATGAACTT+GGG | 0.614812 | 3.4:-71989548 | None:intergenic |
| ATGTTTCCCAAGTCTTTGCG+TGG | 0.615774 | 3.4:+71991815 | MS.gene29053:CDS |
| TTAGAATGGTTGAAAGCTCA+TGG | 0.616091 | 3.4:+71999246 | MS.gene29053:CDS |
| CAGAAGACAGTATCTTCTCA+AGG | 0.616801 | 3.4:+71990172 | MS.gene29053:CDS |
| CATGATGATTACTGGAAACA+TGG | 0.617331 | 3.4:+71990025 | MS.gene29053:CDS |
| TAATGGTTCAAAATTCCCAA+AGG | 0.619992 | 3.4:+71996313 | MS.gene29053:CDS |
| ACACAACCAATTAACAGTCA+AGG | 0.621344 | 3.4:+71996398 | MS.gene29053:CDS |
| GCTGATTATCAGACCACTGG+AGG | 0.623549 | 3.4:+71989297 | MS.gene29053:CDS |
| ATAAGTGCTTGAATAACTTG+CGG | 0.624859 | 3.4:-71989265 | None:intergenic |
| ATAAGAGCTACTGGAATCTG+TGG | 0.625635 | 3.4:-71989412 | None:intergenic |
| CCGGTTGGCACTGGAAGTTG+GGG | 0.625846 | 3.4:+71996766 | MS.gene29053:CDS |
| CCCGTAGGAAGCGTTCAAGA+TGG | 0.628957 | 3.4:+71988982 | MS.gene29053:CDS |
| GCGTATGCATTATAATCTTG+TGG | 0.629965 | 3.4:-71989060 | None:intergenic |
| AGATACGTAGGAAACGGGTA+CGG | 0.629992 | 3.4:-71999145 | None:intergenic |
| AAAGATGGAGCACTTTGTAA+GGG | 0.633740 | 3.4:-71990256 | None:intergenic |
| ACGTAGGAAACGGGTACGGT+TGG | 0.636510 | 3.4:-71999141 | None:intergenic |
| AGAATAAATTCCATTCGCTG+TGG | 0.636759 | 3.4:-71988917 | None:intergenic |
| TGATAACAATGGAGACATGA+TGG | 0.639004 | 3.4:+71999284 | MS.gene29053:CDS |
| AGACCCAGTATTCTGAAAGG+AGG | 0.639972 | 3.4:-71989232 | None:intergenic |
| TAGACGATCTAAAAGTAGGT+GGG | 0.640865 | 3.4:+71994093 | MS.gene29053:CDS |
| TAAACACTCTTCCAAAGCAG+TGG | 0.643140 | 3.4:-71999226 | None:intergenic |
| TGGAAACTTGTACAACAGAA+GGG | 0.643768 | 3.4:+71996004 | MS.gene29053:CDS |
| CAGCAAGGTTGGCATCTCCG+TGG | 0.644377 | 3.4:-71999641 | None:intergenic |
| CAGAAGTCAGTTGTGCCCCA+GGG | 0.647530 | 3.4:+71989508 | MS.gene29053:CDS |
| ATTAGACCCAGTATTCTGAA+AGG | 0.648423 | 3.4:-71989235 | None:intergenic |
| GCCAGAGCCAGAAGATGCTG+TGG | 0.649747 | 3.4:+71999617 | MS.gene29053:CDS |
| AGCTGTTGAGGATATTGACT+GGG | 0.653712 | 3.4:+71996073 | MS.gene29053:CDS |
| GTATCATTACTTGTTGACAC+AGG | 0.654941 | 3.4:-71994151 | None:intergenic |
| GTATCATTACTTGTTGACAC+AGG | 0.654941 | 3.4:-71994214 | None:intergenic |
| ACCACTCTTCCCAATGCCGG+AGG | 0.658673 | 3.4:+71993237 | MS.gene29053:CDS |
| GATATTCAAACCTGTAAAGG+CGG | 0.659423 | 3.4:-71989684 | None:intergenic |
| TATCGAGTAAAGCTCCCCAA+AGG | 0.663783 | 3.4:+71995754 | MS.gene29053:CDS |
| GTAACTTGTATACGGATGAG+AGG | 0.666117 | 3.4:-71989388 | None:intergenic |
| GGAGGTTACCAAAACAGCAA+CGG | 0.667976 | 3.4:+71989315 | MS.gene29053:CDS |
| TAGGTGGGAGCCATTACCAG+AGG | 0.672885 | 3.4:+71994108 | MS.gene29053:CDS |
| TCCTAGAACCTGAGATACGT+AGG | 0.679539 | 3.4:-71999157 | None:intergenic |
| CCTGCTGCAGTAAATAGTGG+TGG | 0.681233 | 3.4:+71990001 | MS.gene29053:CDS |
| ACAGGATGATGGTTAACCGG+CGG | 0.700654 | 3.4:-71994196 | None:intergenic |
| GCCACAATACAATCAATGGG+CGG | 0.709329 | 3.4:+71989470 | MS.gene29053:CDS |
| AGACAAGTTCTCTGTCCCTG+GGG | 0.709687 | 3.4:-71989523 | None:intergenic |
| TCTTGAACGCTTCCTACGGG+CGG | 0.710978 | 3.4:-71988979 | None:intergenic |
| TATTGTGGATATGATTGTGG+AGG | 0.718936 | 3.4:-71989630 | None:intergenic |
| GTATTGTGGCTGATACTGCA+CGG | 0.734393 | 3.4:-71989457 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 71988874 | 71999695 | 71988874 | ID=MS.gene29053 |
| chr3.4 | mRNA | 71988874 | 71999695 | 71988874 | ID=MS.gene29053.t1;Parent=MS.gene29053 |
| chr3.4 | exon | 71988874 | 71989695 | 71988874 | ID=MS.gene29053.t1.exon1;Parent=MS.gene29053.t1 |
| chr3.4 | CDS | 71988874 | 71989695 | 71988874 | ID=cds.MS.gene29053.t1;Parent=MS.gene29053.t1 |
| chr3.4 | exon | 71990001 | 71990474 | 71990001 | ID=MS.gene29053.t1.exon2;Parent=MS.gene29053.t1 |
| chr3.4 | CDS | 71990001 | 71990474 | 71990001 | ID=cds.MS.gene29053.t1;Parent=MS.gene29053.t1 |
| chr3.4 | exon | 71991809 | 71991910 | 71991809 | ID=MS.gene29053.t1.exon3;Parent=MS.gene29053.t1 |
| chr3.4 | CDS | 71991809 | 71991910 | 71991809 | ID=cds.MS.gene29053.t1;Parent=MS.gene29053.t1 |
| chr3.4 | exon | 71993181 | 71993278 | 71993181 | ID=MS.gene29053.t1.exon4;Parent=MS.gene29053.t1 |
| chr3.4 | CDS | 71993181 | 71993278 | 71993181 | ID=cds.MS.gene29053.t1;Parent=MS.gene29053.t1 |
| chr3.4 | exon | 71994039 | 71994279 | 71994039 | ID=MS.gene29053.t1.exon5;Parent=MS.gene29053.t1 |
| chr3.4 | CDS | 71994039 | 71994279 | 71994039 | ID=cds.MS.gene29053.t1;Parent=MS.gene29053.t1 |
| chr3.4 | exon | 71995681 | 71996175 | 71995681 | ID=MS.gene29053.t1.exon6;Parent=MS.gene29053.t1 |
| chr3.4 | CDS | 71995681 | 71996175 | 71995681 | ID=cds.MS.gene29053.t1;Parent=MS.gene29053.t1 |
| chr3.4 | exon | 71996279 | 71996419 | 71996279 | ID=MS.gene29053.t1.exon7;Parent=MS.gene29053.t1 |
| chr3.4 | CDS | 71996279 | 71996419 | 71996279 | ID=cds.MS.gene29053.t1;Parent=MS.gene29053.t1 |
| chr3.4 | exon | 71996749 | 71996808 | 71996749 | ID=MS.gene29053.t1.exon8;Parent=MS.gene29053.t1 |
| chr3.4 | CDS | 71996749 | 71996808 | 71996749 | ID=cds.MS.gene29053.t1;Parent=MS.gene29053.t1 |
| chr3.4 | exon | 71997992 | 71998122 | 71997992 | ID=MS.gene29053.t1.exon9;Parent=MS.gene29053.t1 |
| chr3.4 | CDS | 71997992 | 71998122 | 71997992 | ID=cds.MS.gene29053.t1;Parent=MS.gene29053.t1 |
| chr3.4 | exon | 71998869 | 71999002 | 71998869 | ID=MS.gene29053.t1.exon10;Parent=MS.gene29053.t1 |
| chr3.4 | CDS | 71998869 | 71999002 | 71998869 | ID=cds.MS.gene29053.t1;Parent=MS.gene29053.t1 |
| chr3.4 | exon | 71999082 | 71999317 | 71999082 | ID=MS.gene29053.t1.exon11;Parent=MS.gene29053.t1 |
| chr3.4 | CDS | 71999082 | 71999317 | 71999082 | ID=cds.MS.gene29053.t1;Parent=MS.gene29053.t1 |
| chr3.4 | exon | 71999594 | 71999695 | 71999594 | ID=MS.gene29053.t1.exon12;Parent=MS.gene29053.t1 |
| chr3.4 | CDS | 71999594 | 71999695 | 71999594 | ID=cds.MS.gene29053.t1;Parent=MS.gene29053.t1 |
| Gene Sequence |
| Protein sequence |
