Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74997.t1 | XP_003590938.1 | 91.1 | 449 | 33 | 3 | 1 | 442 | 1 | 449 | 3.40E-222 | 780.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74997.t1 | Q9LKR8 | 58.2 | 392 | 152 | 7 | 56 | 442 | 50 | 434 | 9.3e-120 | 431.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74997.t1 | G7I682 | 91.1 | 449 | 33 | 3 | 1 | 442 | 1 | 449 | 2.4e-222 | 780.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050076 | MS.gene74997 | 0.810995 | 8.74E-51 | -1.69E-46 |
| MS.gene050099 | MS.gene74997 | 0.820112 | 8.15E-53 | -1.69E-46 |
| MS.gene050404 | MS.gene74997 | 0.872057 | 4.26E-67 | -1.69E-46 |
| MS.gene050406 | MS.gene74997 | 0.862171 | 6.12E-64 | -1.69E-46 |
| MS.gene050529 | MS.gene74997 | 0.82471 | 6.96E-54 | -1.69E-46 |
| MS.gene050812 | MS.gene74997 | 0.840419 | 8.79E-58 | -1.69E-46 |
| MS.gene05101 | MS.gene74997 | 0.814037 | 1.89E-51 | -1.69E-46 |
| MS.gene051171 | MS.gene74997 | 0.876858 | 1.00E-68 | -1.69E-46 |
| MS.gene051240 | MS.gene74997 | 0.82854 | 8.49E-55 | -1.69E-46 |
| MS.gene051242 | MS.gene74997 | 0.881166 | 3.01E-70 | -1.69E-46 |
| MS.gene051244 | MS.gene74997 | 0.874616 | 5.87E-68 | -1.69E-46 |
| MS.gene051471 | MS.gene74997 | 0.826486 | 2.64E-54 | -1.69E-46 |
| MS.gene052078 | MS.gene74997 | 0.858773 | 6.54E-63 | -1.69E-46 |
| MS.gene052290 | MS.gene74997 | 0.824572 | 7.51E-54 | -1.69E-46 |
| MS.gene052310 | MS.gene74997 | 0.828299 | 9.71E-55 | -1.69E-46 |
| MS.gene052340 | MS.gene74997 | 0.819474 | 1.14E-52 | -1.69E-46 |
| MS.gene053557 | MS.gene74997 | 0.821098 | 4.84E-53 | -1.69E-46 |
| MS.gene053907 | MS.gene74997 | 0.809296 | 2.03E-50 | -1.69E-46 |
| MS.gene053971 | MS.gene74997 | 0.841322 | 5.10E-58 | -1.69E-46 |
| MS.gene054327 | MS.gene74997 | 0.817234 | 3.67E-52 | -1.69E-46 |
| MS.gene055254 | MS.gene74997 | 0.819012 | 1.45E-52 | -1.69E-46 |
| MS.gene055370 | MS.gene74997 | 0.823571 | 1.29E-53 | -1.69E-46 |
| MS.gene055422 | MS.gene74997 | 0.802384 | 5.76E-49 | -1.69E-46 |
| MS.gene055428 | MS.gene74997 | 0.827177 | 1.81E-54 | -1.69E-46 |
| MS.gene055896 | MS.gene74997 | 0.800725 | 1.26E-48 | -1.69E-46 |
| MS.gene056612 | MS.gene74997 | 0.810005 | 1.43E-50 | -1.69E-46 |
| MS.gene056633 | MS.gene74997 | 0.836738 | 7.85E-57 | -1.69E-46 |
| MS.gene056664 | MS.gene74997 | 0.887175 | 1.80E-72 | -1.69E-46 |
| MS.gene056796 | MS.gene74997 | 0.83373 | 4.51E-56 | -1.69E-46 |
| MS.gene056903 | MS.gene74997 | 0.801489 | 8.79E-49 | -1.69E-46 |
| MS.gene05702 | MS.gene74997 | 0.806948 | 6.42E-50 | -1.69E-46 |
| MS.gene057032 | MS.gene74997 | 0.846572 | 2.00E-59 | -1.69E-46 |
| MS.gene057196 | MS.gene74997 | 0.816704 | 4.82E-52 | -1.69E-46 |
| MS.gene057295 | MS.gene74997 | 0.807828 | 4.18E-50 | -1.69E-46 |
| MS.gene058002 | MS.gene74997 | 0.810154 | 1.33E-50 | -1.69E-46 |
| MS.gene058082 | MS.gene74997 | 0.804306 | 2.30E-49 | -1.69E-46 |
| MS.gene058142 | MS.gene74997 | 0.801113 | 1.05E-48 | -1.69E-46 |
| MS.gene058233 | MS.gene74997 | 0.823389 | 1.42E-53 | -1.69E-46 |
| MS.gene058276 | MS.gene74997 | 0.893932 | 3.96E-75 | -1.69E-46 |
| MS.gene058293 | MS.gene74997 | 0.821928 | 3.11E-53 | -1.69E-46 |
| MS.gene058743 | MS.gene74997 | 0.820375 | 7.09E-53 | -1.69E-46 |
| MS.gene058746 | MS.gene74997 | 0.869282 | 3.48E-66 | -1.69E-46 |
| MS.gene059326 | MS.gene74997 | 0.808129 | 3.60E-50 | -1.69E-46 |
| MS.gene059597 | MS.gene74997 | 0.80459 | 2.01E-49 | -1.69E-46 |
| MS.gene059676 | MS.gene74997 | 0.812619 | 3.87E-51 | -1.69E-46 |
| MS.gene059692 | MS.gene74997 | 0.805521 | 1.28E-49 | -1.69E-46 |
| MS.gene059695 | MS.gene74997 | 0.805888 | 1.07E-49 | -1.69E-46 |
| MS.gene059858 | MS.gene74997 | 0.815222 | 1.03E-51 | -1.69E-46 |
| MS.gene059894 | MS.gene74997 | 0.859384 | 4.29E-63 | -1.69E-46 |
| MS.gene059960 | MS.gene74997 | 0.823458 | 1.37E-53 | -1.69E-46 |
| MS.gene060407 | MS.gene74997 | 0.869688 | 2.57E-66 | -1.69E-46 |
| MS.gene06090 | MS.gene74997 | 0.81907 | 1.41E-52 | -1.69E-46 |
| MS.gene061049 | MS.gene74997 | 0.807196 | 5.69E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74997.t1 | MTR_1g079870 | 94.878 | 449 | 16 | 3 | 1 | 442 | 1 | 449 | 0.0 | 854 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74997.t1 | AT3G04550 | 58.333 | 396 | 148 | 7 | 57 | 442 | 61 | 449 | 1.17e-152 | 441 |
| MS.gene74997.t1 | AT5G28500 | 53.968 | 441 | 186 | 10 | 8 | 442 | 5 | 434 | 2.38e-141 | 411 |
| MS.gene74997.t1 | AT5G28500 | 59.906 | 212 | 84 | 1 | 56 | 266 | 50 | 261 | 9.76e-81 | 250 |
Find 117 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGGTGGTGTTACCGGCTT+GGG | 0.218551 | 1.4:-65056948 | MS.gene74997:CDS |
| TGGTAATGATGTTGGTTTAA+AGG | 0.259795 | 1.4:-65056759 | MS.gene74997:CDS |
| GGAAGGAGAAAGGGTGATTA+TGG | 0.275153 | 1.4:-65057038 | MS.gene74997:CDS |
| TGTTCAAGAAAAGCAGTTCT+TGG | 0.278998 | 1.4:+65057244 | None:intergenic |
| CGGAGAAAGGGTGGGAGAAA+TGG | 0.285910 | 1.4:-65056967 | MS.gene74997:CDS |
| GGACGGCTGAGATTGATTTA+AGG | 0.286999 | 1.4:+65057848 | None:intergenic |
| CTATCAGCAACCACCAAAAT+AGG | 0.309921 | 1.4:+65056833 | None:intergenic |
| ATGGGTGTTAACGAGTGTTT+AGG | 0.310994 | 1.4:-65056710 | MS.gene74997:CDS |
| GTATAAGGAAGAGCCTATTT+TGG | 0.313854 | 1.4:-65056846 | MS.gene74997:CDS |
| TAAAGCTAGAAAAGTGGTTT+TGG | 0.317665 | 1.4:-65057197 | MS.gene74997:CDS |
| GGAGAAATGGGTGGTGTTAC+CGG | 0.322308 | 1.4:-65056954 | MS.gene74997:CDS |
| GAATGATGATGGGCTCTATT+TGG | 0.341099 | 1.4:-65056792 | MS.gene74997:CDS |
| GGTATTGTGGTGGCGGAGAA+AGG | 0.343947 | 1.4:-65056980 | MS.gene74997:CDS |
| ATATGTTGAGTGAAGAAGTT+TGG | 0.346774 | 1.4:-65056643 | MS.gene74997:CDS |
| TTCAATCTCACCACATTAAC+AGG | 0.351102 | 1.4:+65057118 | None:intergenic |
| GGAGAAAGGGTGGGAGAAAT+GGG | 0.357471 | 1.4:-65056966 | MS.gene74997:CDS |
| GAAGGCTAATAGGTGGTATA+AGG | 0.372638 | 1.4:-65056861 | MS.gene74997:CDS |
| AGATCTAGCCCGTTCGATAA+AGG | 0.374992 | 1.4:-65057383 | MS.gene74997:CDS |
| TGGGTGTTAACGAGTGTTTA+GGG | 0.380614 | 1.4:-65056709 | MS.gene74997:CDS |
| TTTGTATTACAGACAAAGTA+AGG | 0.394057 | 1.4:-65057287 | MS.gene74997:CDS |
| GCGAGGATGTCGATGCGTCC+TGG | 0.400354 | 1.4:+65057703 | None:intergenic |
| GGAATGTAGTTATTGTTGTT+AGG | 0.400847 | 1.4:-65056688 | MS.gene74997:CDS |
| AGGTGTTGGTGGTGGTCGGA+AGG | 0.417530 | 1.4:+65057756 | None:intergenic |
| TTTGATGGGAGAGGTGTTGG+TGG | 0.417794 | 1.4:+65057745 | None:intergenic |
| AATGGGTGGTGTTACCGGCT+TGG | 0.425130 | 1.4:-65056949 | MS.gene74997:CDS |
| TGGGAGGTGAAAAGCCTTCT+CGG | 0.427411 | 1.4:+65057629 | None:intergenic |
| TGGTTGCTGATAGGAGTAAG+AGG | 0.436269 | 1.4:-65056823 | MS.gene74997:CDS |
| ATCTTCAACCTCCTCCTCTT+CGG | 0.440465 | 1.4:+65057156 | None:intergenic |
| GATGCCAGTGGTTTCTTCAA+TGG | 0.441630 | 1.4:+65057606 | None:intergenic |
| GTAATAAGAACGGTTGAGAT+TGG | 0.442968 | 1.4:+65057873 | None:intergenic |
| TTGGTGGTGGTCGGAAGGGT+TGG | 0.445837 | 1.4:+65057761 | None:intergenic |
| ACGGTTGAGATTGGAGGAAG+AGG | 0.450106 | 1.4:+65057882 | None:intergenic |
| TGTTGGTTTAAAGGTTCAAA+GGG | 0.456616 | 1.4:-65056750 | MS.gene74997:CDS |
| AGGGAGGTGGAGAATGATGA+TGG | 0.457400 | 1.4:-65056803 | MS.gene74997:CDS |
| GTATTGTGGTGGCGGAGAAA+GGG | 0.458441 | 1.4:-65056979 | MS.gene74997:CDS |
| TTGTGGTGGCGGAGAAAGGG+TGG | 0.459053 | 1.4:-65056976 | MS.gene74997:CDS |
| GATGGGAGAGGTGTTGGTGG+TGG | 0.461870 | 1.4:+65057748 | None:intergenic |
| CGGGAAATCCTTTATCGAAC+GGG | 0.464450 | 1.4:+65057375 | None:intergenic |
| TCGCCAACCGTCTCGGTGCA+TGG | 0.488440 | 1.4:-65057684 | MS.gene74997:CDS |
| CTCTATTTGGTAAAAGATGA+TGG | 0.490267 | 1.4:-65056779 | MS.gene74997:CDS |
| GGAGAGGTGTTGGTGGTGGT+CGG | 0.491418 | 1.4:+65057752 | None:intergenic |
| AAAGATGATGGTAATGATGT+TGG | 0.491642 | 1.4:-65056767 | MS.gene74997:CDS |
| ATTGTGGAGAAGAGATATGA+TGG | 0.494977 | 1.4:-65057418 | MS.gene74997:CDS |
| TGGGAAGGCCGAAGAGGAGG+AGG | 0.495417 | 1.4:-65057164 | MS.gene74997:CDS |
| TAAAGCTGAGGAAGGAGAAA+GGG | 0.501190 | 1.4:-65057047 | MS.gene74997:CDS |
| GGTGTTGGTGGTGGTCGGAA+GGG | 0.510511 | 1.4:+65057757 | None:intergenic |
| GTGAAAAGCCTTCTCGGAGG+AGG | 0.513427 | 1.4:+65057635 | None:intergenic |
| CTCTCTTACTTTGATAGCGG+TGG | 0.514436 | 1.4:-65057505 | MS.gene74997:CDS |
| GACATCCTCGCCAACCGTCT+CGG | 0.514848 | 1.4:-65057691 | MS.gene74997:CDS |
| TATGTTGAGTGAAGAAGTTT+GGG | 0.515005 | 1.4:-65056642 | MS.gene74997:CDS |
| GCCAGTGGTTTCTTCAATGG+TGG | 0.515019 | 1.4:+65057609 | None:intergenic |
| GGTTGGTATAGTTGTTTCTG+TGG | 0.515153 | 1.4:+65057778 | None:intergenic |
| CGGTTGAGATTGGAGGAAGA+GGG | 0.515311 | 1.4:+65057883 | None:intergenic |
| CCAGTGGTTTCTTCAATGGT+GGG | 0.515507 | 1.4:+65057610 | None:intergenic |
| GAAGAAACCACTGGCATCAC+CGG | 0.519296 | 1.4:-65057601 | MS.gene74997:CDS |
| GTAAAGCTGAGGAAGGAGAA+AGG | 0.520531 | 1.4:-65057048 | MS.gene74997:CDS |
| ATGTTGGTTTAAAGGTTCAA+AGG | 0.522076 | 1.4:-65056751 | MS.gene74997:CDS |
| AAAGCAGTTCTTGGATCAGA+AGG | 0.525966 | 1.4:+65057253 | None:intergenic |
| GGAAGGTGAGTTTGGTATTG+TGG | 0.527760 | 1.4:-65056993 | MS.gene74997:CDS |
| TGCAGCAGCACGTTGCGAAG+TGG | 0.531493 | 1.4:+65057450 | None:intergenic |
| TGATAGGAGTAAGAGGGAGG+TGG | 0.538668 | 1.4:-65056816 | MS.gene74997:CDS |
| CGAGGATGTCGATGCGTCCT+GGG | 0.540215 | 1.4:+65057704 | None:intergenic |
| CCTTTCCCTAAATTAACCAC+CGG | 0.543574 | 1.4:+65056923 | None:intergenic |
| TGAGTTTGGTATTGTGGTGG+CGG | 0.548046 | 1.4:-65056987 | MS.gene74997:CDS |
| TGGGTGGTGTTACCGGCTTG+GGG | 0.549034 | 1.4:-65056947 | MS.gene74997:CDS |
| TACCACCTATTAGCCTTCCA+TGG | 0.550710 | 1.4:+65056866 | None:intergenic |
| GTCTGATAAAGCTAGAAAAG+TGG | 0.552366 | 1.4:-65057203 | MS.gene74997:CDS |
| GAGTGGGAAGGCCGAAGAGG+AGG | 0.553779 | 1.4:-65057167 | MS.gene74997:CDS |
| GGTTGCTGATAGGAGTAAGA+GGG | 0.554153 | 1.4:-65056822 | MS.gene74997:CDS |
| GAGAAGAGATATGATGGAAA+AGG | 0.557379 | 1.4:-65057412 | MS.gene74997:CDS |
| TACGACAACCTTGACATCCC+AGG | 0.560220 | 1.4:-65057721 | MS.gene74997:CDS |
| CCGGTGGTTAATTTAGGGAA+AGG | 0.562795 | 1.4:-65056923 | MS.gene74997:CDS |
| ATCACTTCCCTCCTCCGAGA+AGG | 0.563625 | 1.4:-65057643 | MS.gene74997:CDS |
| ATTTAAGGCGGTAATAAGAA+CGG | 0.564306 | 1.4:+65057863 | None:intergenic |
| TTTGGAGGAGTTGAGTGGGA+AGG | 0.567664 | 1.4:-65057179 | MS.gene74997:CDS |
| ATAAGAACGGTTGAGATTGG+AGG | 0.569107 | 1.4:+65057876 | None:intergenic |
| TGCTGATAGGAGTAAGAGGG+AGG | 0.570809 | 1.4:-65056819 | MS.gene74997:CDS |
| AAATAAGCAAGACAATCTCC+CGG | 0.574397 | 1.4:+65057307 | None:intergenic |
| AGGTGAGTTTGGTATTGTGG+TGG | 0.575600 | 1.4:-65056990 | MS.gene74997:CDS |
| TGTGGTGGCGGAGAAAGGGT+GGG | 0.576608 | 1.4:-65056975 | MS.gene74997:CDS |
| GAGAATCTCTTCATCCGTGT+TGG | 0.578676 | 1.4:+65057525 | None:intergenic |
| AATAAGCAAGACAATCTCCC+GGG | 0.581163 | 1.4:+65057308 | None:intergenic |
| AATGTGGTGAGATTGAAGAT+TGG | 0.584496 | 1.4:-65057112 | MS.gene74997:CDS |
| GGGTGGTGTTACCGGCTTGG+GGG | 0.590439 | 1.4:-65056946 | MS.gene74997:CDS |
| GGGAGGTGGAGAATGATGAT+GGG | 0.594428 | 1.4:-65056802 | MS.gene74997:CDS |
| TCGGGAAATCCTTTATCGAA+CGG | 0.594692 | 1.4:+65057374 | None:intergenic |
| CGATGCGTCCTGGGATGTCA+AGG | 0.601402 | 1.4:+65057713 | None:intergenic |
| CAGCACGTTGCGAAGTGGAG+AGG | 0.601970 | 1.4:+65057455 | None:intergenic |
| GTGGTTTCTTCAATGGTGGG+AGG | 0.602805 | 1.4:+65057613 | None:intergenic |
| TGAAAAGCCTTCTCGGAGGA+GGG | 0.605330 | 1.4:+65057636 | None:intergenic |
| ATTAAAAGTGCCTGTTAATG+TGG | 0.605844 | 1.4:-65057128 | MS.gene74997:CDS |
| GTTGAGTGGGAAGGCCGAAG+AGG | 0.606420 | 1.4:-65057170 | MS.gene74997:CDS |
| ATTCTCTCTTACTTTGATAG+CGG | 0.609195 | 1.4:-65057508 | MS.gene74997:CDS |
| GAAAGGGTGGGAGAAATGGG+TGG | 0.611751 | 1.4:-65056963 | MS.gene74997:CDS |
| TTCAACGCCGGTGATGCCAG+TGG | 0.614298 | 1.4:+65057594 | None:intergenic |
| CCTTCCTCAGCTTTACACAC+CGG | 0.615461 | 1.4:+65057055 | None:intergenic |
| ATGCACCGAGACGGTTGGCG+AGG | 0.618334 | 1.4:+65057686 | None:intergenic |
| TGATGAAGGGTTGTTGAGGA+CGG | 0.618497 | 1.4:+65057831 | None:intergenic |
| AAGGATTTCCCGAGTAGACG+CGG | 0.620983 | 1.4:-65057364 | MS.gene74997:CDS |
| CGGAGGAGGGAAGTGATGAG+AGG | 0.622871 | 1.4:+65057649 | None:intergenic |
| CCGGTGTGTAAAGCTGAGGA+AGG | 0.623619 | 1.4:-65057055 | MS.gene74997:CDS |
| GTGCCATGCACCGAGACGGT+TGG | 0.624137 | 1.4:+65057681 | None:intergenic |
| AGTAGCTGAGGCGACTTCAG+TGG | 0.630858 | 1.4:-65057086 | MS.gene74997:CDS |
| CGGCTGAGATTGATTTAAGG+CGG | 0.631698 | 1.4:+65057851 | None:intergenic |
| GAAGATTGGTGAAGTAGCTG+AGG | 0.639205 | 1.4:-65057098 | MS.gene74997:CDS |
| TGCTGCAGCGCGTTTCATTG+TGG | 0.640579 | 1.4:-65057434 | MS.gene74997:CDS |
| TACCATGGAAGGCTAATAGG+TGG | 0.643378 | 1.4:-65056868 | MS.gene74997:CDS |
| CCCACCATTGAAGAAACCAC+TGG | 0.645268 | 1.4:-65057610 | MS.gene74997:CDS |
| ATTCGTGCCATGCACCGAGA+CGG | 0.651777 | 1.4:+65057677 | None:intergenic |
| AGGCCACCTACTGAAAATGA+TGG | 0.653259 | 1.4:-65056668 | MS.gene74997:CDS |
| TGACACTCTTGTCGCCAACA+CGG | 0.658163 | 1.4:-65057539 | MS.gene74997:CDS |
| GTGTTAACAGAACTGATACA+TGG | 0.659395 | 1.4:+65057934 | None:intergenic |
| GATACGATTCTGTTCAACGC+CGG | 0.685752 | 1.4:+65057582 | None:intergenic |
| GTTGGTTTAAAGGTTCAAAG+GGG | 0.692675 | 1.4:-65056749 | MS.gene74997:CDS |
| TTTGCCGGTGTGTAAAGCTG+AGG | 0.704737 | 1.4:-65057059 | MS.gene74997:CDS |
| TGTGTGATGAAGGGTTGTTG+AGG | 0.731033 | 1.4:+65057827 | None:intergenic |
| GAGGTGAAAAGCCTTCTCGG+AGG | 0.768603 | 1.4:+65057632 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TTTGTATTACAGACAAAGTA+AGG | - | chr1.4:65057293-65057312 | MS.gene74997:CDS | 25.0% |
| ATATGTTGAGTGAAGAAGTT+TGG | - | chr1.4:65057937-65057956 | MS.gene74997:CDS | 30.0% | |
| ATTAAAAAGGAAGGTGAGTT+TGG | - | chr1.4:65057579-65057598 | MS.gene74997:CDS | 30.0% | |
| ATTCTCTCTTACTTTGATAG+CGG | - | chr1.4:65057072-65057091 | MS.gene74997:CDS | 30.0% | |
| CTCTATTTGGTAAAAGATGA+TGG | - | chr1.4:65057801-65057820 | MS.gene74997:CDS | 30.0% | |
| TATGTTGAGTGAAGAAGTTT+GGG | - | chr1.4:65057938-65057957 | MS.gene74997:CDS | 30.0% | |
| ! | AAAGATGATGGTAATGATGT+TGG | - | chr1.4:65057813-65057832 | MS.gene74997:CDS | 30.0% |
| ! | ATATCACCATCATTTTCAGT+AGG | + | chr1.4:65057921-65057940 | None:intergenic | 30.0% |
| ! | ATTTAAGGCGGTAATAAGAA+CGG | + | chr1.4:65056720-65056739 | None:intergenic | 30.0% |
| ! | CCTTCCTTTTTAATCTCAAA+AGG | + | chr1.4:65057573-65057592 | None:intergenic | 30.0% |
| ! | GGAATGTAGTTATTGTTGTT+AGG | - | chr1.4:65057892-65057911 | MS.gene74997:CDS | 30.0% |
| ! | TAAAGCTAGAAAAGTGGTTT+TGG | - | chr1.4:65057383-65057402 | MS.gene74997:CDS | 30.0% |
| !! | ATGTTGGTTTAAAGGTTCAA+AGG | - | chr1.4:65057829-65057848 | MS.gene74997:CDS | 30.0% |
| !! | ATTAAAAGTGCCTGTTAATG+TGG | - | chr1.4:65057452-65057471 | MS.gene74997:CDS | 30.0% |
| !! | TGGTAATGATGTTGGTTTAA+AGG | - | chr1.4:65057821-65057840 | MS.gene74997:CDS | 30.0% |
| !! | TGTTGGTTTAAAGGTTCAAA+GGG | - | chr1.4:65057830-65057849 | MS.gene74997:CDS | 30.0% |
| !!! | AGCACCTTTTGAGATTAAAA+AGG | - | chr1.4:65057566-65057585 | MS.gene74997:CDS | 30.0% |
| !!! | CCTTTTGAGATTAAAAAGGA+AGG | - | chr1.4:65057570-65057589 | MS.gene74997:CDS | 30.0% |
| AAATAAGCAAGACAATCTCC+CGG | + | chr1.4:65057276-65057295 | None:intergenic | 35.0% | |
| AATGTGGTGAGATTGAAGAT+TGG | - | chr1.4:65057468-65057487 | MS.gene74997:CDS | 35.0% | |
| ATTGTGGAGAAGAGATATGA+TGG | - | chr1.4:65057162-65057181 | MS.gene74997:CDS | 35.0% | |
| GTAATAAGAACGGTTGAGAT+TGG | + | chr1.4:65056710-65056729 | None:intergenic | 35.0% | |
| GTCTGATAAAGCTAGAAAAG+TGG | - | chr1.4:65057377-65057396 | MS.gene74997:CDS | 35.0% | |
| GTGTTAACAGAACTGATACA+TGG | + | chr1.4:65056649-65056668 | None:intergenic | 35.0% | |
| TAGACGCGGTGAAAAAAATT+GGG | - | chr1.4:65057230-65057249 | MS.gene74997:CDS | 35.0% | |
| TGTTCAAGAAAAGCAGTTCT+TGG | + | chr1.4:65057339-65057358 | None:intergenic | 35.0% | |
| TTCAATCTCACCACATTAAC+AGG | + | chr1.4:65057465-65057484 | None:intergenic | 35.0% | |
| ! | GAGAAGAGATATGATGGAAA+AGG | - | chr1.4:65057168-65057187 | MS.gene74997:CDS | 35.0% |
| ! | GTATAAGGAAGAGCCTATTT+TGG | - | chr1.4:65057734-65057753 | MS.gene74997:CDS | 35.0% |
| ! | GTTGGTTTAAAGGTTCAAAG+GGG | - | chr1.4:65057831-65057850 | MS.gene74997:CDS | 35.0% |
| ! | TTTTACCATGGAAGGCTAAT+AGG | - | chr1.4:65057709-65057728 | MS.gene74997:CDS | 35.0% |
| !! | GGTTCGATTTTGAAGGAAAT+GGG | - | chr1.4:65057852-65057871 | MS.gene74997:CDS | 35.0% |
| !! | TCAAGGTTGTCGTATTTTGA+TGG | + | chr1.4:65056853-65056872 | None:intergenic | 35.0% |
| !!! | AGTTTTGATTATCATCTCCC+GGG | - | chr1.4:65057255-65057274 | MS.gene74997:CDS | 35.0% |
| !!! | CAAGGTTGTCGTATTTTGAT+GGG | + | chr1.4:65056852-65056871 | None:intergenic | 35.0% |
| !!! | GAGTTTTGATTATCATCTCC+CGG | - | chr1.4:65057254-65057273 | MS.gene74997:CDS | 35.0% |
| !!! | GTTTTTTGCTGTGTGATGAA+GGG | + | chr1.4:65056765-65056784 | None:intergenic | 35.0% |
| !!! | TGTTTTTTGCTGTGTGATGA+AGG | + | chr1.4:65056766-65056785 | None:intergenic | 35.0% |
| AAAGCAGTTCTTGGATCAGA+AGG | + | chr1.4:65057330-65057349 | None:intergenic | 40.0% | |
| AATAAGCAAGACAATCTCCC+GGG | + | chr1.4:65057275-65057294 | None:intergenic | 40.0% | |
| ATAAGAACGGTTGAGATTGG+AGG | + | chr1.4:65056707-65056726 | None:intergenic | 40.0% | |
| ATGGGTGTTAACGAGTGTTT+AGG | - | chr1.4:65057870-65057889 | MS.gene74997:CDS | 40.0% | |
| CCTTTCCCTAAATTAACCAC+CGG | + | chr1.4:65057660-65057679 | None:intergenic | 40.0% | |
| CTATCAGCAACCACCAAAAT+AGG | + | chr1.4:65057750-65057769 | None:intergenic | 40.0% | |
| GAAGGCTAATAGGTGGTATA+AGG | - | chr1.4:65057719-65057738 | MS.gene74997:CDS | 40.0% | |
| GTAGACGCGGTGAAAAAAAT+TGG | - | chr1.4:65057229-65057248 | MS.gene74997:CDS | 40.0% | |
| TAAAGCTGAGGAAGGAGAAA+GGG | - | chr1.4:65057533-65057552 | MS.gene74997:CDS | 40.0% | |
| TCGGGAAATCCTTTATCGAA+CGG | + | chr1.4:65057209-65057228 | None:intergenic | 40.0% | |
| TGGGTGTTAACGAGTGTTTA+GGG | - | chr1.4:65057871-65057890 | MS.gene74997:CDS | 40.0% | |
| ! | TCAAAGGGGTTCGATTTTGA+AGG | - | chr1.4:65057845-65057864 | MS.gene74997:CDS | 40.0% |
| ! | TCACCATCATTTTCAGTAGG+TGG | + | chr1.4:65057918-65057937 | None:intergenic | 40.0% |
| ! | TGCTAGAGTTTTACCATGGA+AGG | - | chr1.4:65057701-65057720 | MS.gene74997:CDS | 40.0% |
| ! | TGGATGCTAGAGTTTTACCA+TGG | - | chr1.4:65057697-65057716 | MS.gene74997:CDS | 40.0% |
| !! | GAATGATGATGGGCTCTATT+TGG | - | chr1.4:65057788-65057807 | MS.gene74997:CDS | 40.0% |
| !! | GGGTTCGATTTTGAAGGAAA+TGG | - | chr1.4:65057851-65057870 | MS.gene74997:CDS | 40.0% |
| !! | GGTTGGTATAGTTGTTTCTG+TGG | + | chr1.4:65056805-65056824 | None:intergenic | 40.0% |
| !! | TAAGGAAGAGCCTATTTTGG+TGG | - | chr1.4:65057737-65057756 | MS.gene74997:CDS | 40.0% |
| !!! | AGCTAGAAAAGTGGTTTTGG+AGG | - | chr1.4:65057386-65057405 | MS.gene74997:CDS | 40.0% |
| !!! | CTATTTTGGTGGTTGCTGAT+AGG | - | chr1.4:65057748-65057767 | MS.gene74997:CDS | 40.0% |
| !!! | TATTTTGATGGGAGAGGTGT+TGG | + | chr1.4:65056841-65056860 | None:intergenic | 40.0% |
| !!! | TTGTCGTATTTTGATGGGAG+AGG | + | chr1.4:65056847-65056866 | None:intergenic | 40.0% |
| !!! | TTTTTTTCACCGCGTCTACT+CGG | + | chr1.4:65057228-65057247 | None:intergenic | 40.0% |
| AGATCTAGCCCGTTCGATAA+AGG | - | chr1.4:65057197-65057216 | MS.gene74997:CDS | 45.0% | |
| AGGCCACCTACTGAAAATGA+TGG | - | chr1.4:65057912-65057931 | MS.gene74997:CDS | 45.0% | |
| AGGTGAGTTTGGTATTGTGG+TGG | - | chr1.4:65057590-65057609 | MS.gene74997:CDS | 45.0% | |
| ATCTTCAACCTCCTCCTCTT+CGG | + | chr1.4:65057427-65057446 | None:intergenic | 45.0% | |
| CCAGTGGTTTCTTCAATGGT+GGG | + | chr1.4:65056973-65056992 | None:intergenic | 45.0% | |
| CCGGTGGTTAATTTAGGGAA+AGG | - | chr1.4:65057657-65057676 | MS.gene74997:CDS | 45.0% | |
| CGGGAAATCCTTTATCGAAC+GGG | + | chr1.4:65057208-65057227 | None:intergenic | 45.0% | |
| GAAGATTGGTGAAGTAGCTG+AGG | - | chr1.4:65057482-65057501 | MS.gene74997:CDS | 45.0% | |
| GAGAATCTCTTCATCCGTGT+TGG | + | chr1.4:65057058-65057077 | None:intergenic | 45.0% | |
| GATACGATTCTGTTCAACGC+CGG | + | chr1.4:65057001-65057020 | None:intergenic | 45.0% | |
| GATGCCAGTGGTTTCTTCAA+TGG | + | chr1.4:65056977-65056996 | None:intergenic | 45.0% | |
| GGAAGGAGAAAGGGTGATTA+TGG | - | chr1.4:65057542-65057561 | MS.gene74997:CDS | 45.0% | |
| GGAAGGTGAGTTTGGTATTG+TGG | - | chr1.4:65057587-65057606 | MS.gene74997:CDS | 45.0% | |
| GGTTGCTGATAGGAGTAAGA+GGG | - | chr1.4:65057758-65057777 | MS.gene74997:CDS | 45.0% | |
| GTAAAGCTGAGGAAGGAGAA+AGG | - | chr1.4:65057532-65057551 | MS.gene74997:CDS | 45.0% | |
| TACCATGGAAGGCTAATAGG+TGG | - | chr1.4:65057712-65057731 | MS.gene74997:CDS | 45.0% | |
| TGAGTTTGGTATTGTGGTGG+CGG | - | chr1.4:65057593-65057612 | MS.gene74997:CDS | 45.0% | |
| TGATGAAGGGTTGTTGAGGA+CGG | + | chr1.4:65056752-65056771 | None:intergenic | 45.0% | |
| TGGTTGCTGATAGGAGTAAG+AGG | - | chr1.4:65057757-65057776 | MS.gene74997:CDS | 45.0% | |
| TGTGTGATGAAGGGTTGTTG+AGG | + | chr1.4:65056756-65056775 | None:intergenic | 45.0% | |
| ! | CGGCTGAGATTGATTTAAGG+CGG | + | chr1.4:65056732-65056751 | None:intergenic | 45.0% |
| ! | GGACGGCTGAGATTGATTTA+AGG | + | chr1.4:65056735-65056754 | None:intergenic | 45.0% |
| !! | CTCTCTTACTTTGATAGCGG+TGG | - | chr1.4:65057075-65057094 | MS.gene74997:CDS | 45.0% |
| !! | GACTTCAGTGGTTGTTTTGC+CGG | - | chr1.4:65057506-65057525 | MS.gene74997:CDS | 45.0% |
| !! | TACCACCTATTAGCCTTCCA+TGG | + | chr1.4:65057717-65057736 | None:intergenic | 45.0% |
| !!! | AGGCGTTGTTGTGTCGTTTT+TGG | - | chr1.4:65057677-65057696 | MS.gene74997:CDS | 45.0% |
| !!! | TGGTTTTGGAGGAGTTGAGT+GGG | - | chr1.4:65057397-65057416 | MS.gene74997:CDS | 45.0% |
| !!! | TTTTTTCACCGCGTCTACTC+GGG | + | chr1.4:65057227-65057246 | None:intergenic | 45.0% |
| AAGGATTTCCCGAGTAGACG+CGG | - | chr1.4:65057216-65057235 | MS.gene74997:CDS | 50.0% | |
| ACGGTTGAGATTGGAGGAAG+AGG | + | chr1.4:65056701-65056720 | None:intergenic | 50.0% | |
| AGGGAGGTGGAGAATGATGA+TGG | - | chr1.4:65057777-65057796 | MS.gene74997:CDS | 50.0% | |
| CCCACCATTGAAGAAACCAC+TGG | - | chr1.4:65056970-65056989 | MS.gene74997:CDS | 50.0% | |
| CCTTCCTCAGCTTTACACAC+CGG | + | chr1.4:65057528-65057547 | None:intergenic | 50.0% | |
| CGGTTGAGATTGGAGGAAGA+GGG | + | chr1.4:65056700-65056719 | None:intergenic | 50.0% | |
| GAAGAAACCACTGGCATCAC+CGG | - | chr1.4:65056979-65056998 | MS.gene74997:CDS | 50.0% | |
| GCCAGTGGTTTCTTCAATGG+TGG | + | chr1.4:65056974-65056993 | None:intergenic | 50.0% | |
| GGAGAAAGGGTGGGAGAAAT+GGG | - | chr1.4:65057614-65057633 | MS.gene74997:CDS | 50.0% | |
| GGGAGGTGGAGAATGATGAT+GGG | - | chr1.4:65057778-65057797 | MS.gene74997:CDS | 50.0% | |
| TACGACAACCTTGACATCCC+AGG | - | chr1.4:65056859-65056878 | MS.gene74997:CDS | 50.0% | |
| TGAAAAGCCTTCTCGGAGGA+GGG | + | chr1.4:65056947-65056966 | None:intergenic | 50.0% | |
| TGACACTCTTGTCGCCAACA+CGG | - | chr1.4:65057041-65057060 | MS.gene74997:CDS | 50.0% | |
| TGATAGGAGTAAGAGGGAGG+TGG | - | chr1.4:65057764-65057783 | MS.gene74997:CDS | 50.0% | |
| TGCTGATAGGAGTAAGAGGG+AGG | - | chr1.4:65057761-65057780 | MS.gene74997:CDS | 50.0% | |
| TGGGAGGTGAAAAGCCTTCT+CGG | + | chr1.4:65056954-65056973 | None:intergenic | 50.0% | |
| TTTGCCGGTGTGTAAAGCTG+AGG | - | chr1.4:65057521-65057540 | MS.gene74997:CDS | 50.0% | |
| TTTGGAGGAGTTGAGTGGGA+AGG | - | chr1.4:65057401-65057420 | MS.gene74997:CDS | 50.0% | |
| ! | GTGGTTTCTTCAATGGTGGG+AGG | + | chr1.4:65056970-65056989 | None:intergenic | 50.0% |
| !! | GGAGAAATGGGTGGTGTTAC+CGG | - | chr1.4:65057626-65057645 | MS.gene74997:CDS | 50.0% |
| !! | GTATTGTGGTGGCGGAGAAA+GGG | - | chr1.4:65057601-65057620 | MS.gene74997:CDS | 50.0% |
| !! | TTTGATGGGAGAGGTGTTGG+TGG | + | chr1.4:65056838-65056857 | None:intergenic | 50.0% |
| !!! | GTGGTTTTGGAGGAGTTGAG+TGG | - | chr1.4:65057396-65057415 | MS.gene74997:CDS | 50.0% |
| AGTAGCTGAGGCGACTTCAG+TGG | - | chr1.4:65057494-65057513 | MS.gene74997:CDS | 55.0% | |
| ATCACTTCCCTCCTCCGAGA+AGG | - | chr1.4:65056937-65056956 | MS.gene74997:CDS | 55.0% | |
| ATTCGTGCCATGCACCGAGA+CGG | + | chr1.4:65056906-65056925 | None:intergenic | 55.0% | |
| CCGGTGTGTAAAGCTGAGGA+AGG | - | chr1.4:65057525-65057544 | MS.gene74997:CDS | 55.0% | |
| CGGAGAAAGGGTGGGAGAAA+TGG | - | chr1.4:65057613-65057632 | MS.gene74997:CDS | 55.0% | |
| GAAAGGGTGGGAGAAATGGG+TGG | - | chr1.4:65057617-65057636 | MS.gene74997:CDS | 55.0% | |
| GAGGTGAAAAGCCTTCTCGG+AGG | + | chr1.4:65056951-65056970 | None:intergenic | 55.0% | |
| GGGGGCCGGTGGTTAATTTA+GGG | - | chr1.4:65057652-65057671 | MS.gene74997:CDS | 55.0% | |
| GTGAAAAGCCTTCTCGGAGG+AGG | + | chr1.4:65056948-65056967 | None:intergenic | 55.0% | |
| TGCTGCAGCGCGTTTCATTG+TGG | - | chr1.4:65057146-65057165 | MS.gene74997:CDS | 55.0% | |
| TGGGGGCCGGTGGTTAATTT+AGG | - | chr1.4:65057651-65057670 | MS.gene74997:CDS | 55.0% | |
| !! | AATGGGTGGTGTTACCGGCT+TGG | - | chr1.4:65057631-65057650 | MS.gene74997:CDS | 55.0% |
| !! | ATGGGTGGTGTTACCGGCTT+GGG | - | chr1.4:65057632-65057651 | MS.gene74997:CDS | 55.0% |
| !! | GGTATTGTGGTGGCGGAGAA+AGG | - | chr1.4:65057600-65057619 | MS.gene74997:CDS | 55.0% |
| CAGCACGTTGCGAAGTGGAG+AGG | + | chr1.4:65057128-65057147 | None:intergenic | 60.0% | |
| CGAGGATGTCGATGCGTCCT+GGG | + | chr1.4:65056879-65056898 | None:intergenic | 60.0% | |
| CGATGCGTCCTGGGATGTCA+AGG | + | chr1.4:65056870-65056889 | None:intergenic | 60.0% | |
| CGGAGGAGGGAAGTGATGAG+AGG | + | chr1.4:65056934-65056953 | None:intergenic | 60.0% | |
| GACATCCTCGCCAACCGTCT+CGG | - | chr1.4:65056889-65056908 | MS.gene74997:CDS | 60.0% | |
| GTTGAGTGGGAAGGCCGAAG+AGG | - | chr1.4:65057410-65057429 | MS.gene74997:CDS | 60.0% | |
| TGCAGCAGCACGTTGCGAAG+TGG | + | chr1.4:65057133-65057152 | None:intergenic | 60.0% | |
| TTCAACGCCGGTGATGCCAG+TGG | + | chr1.4:65056989-65057008 | None:intergenic | 60.0% | |
| !! | AGGTGTTGGTGGTGGTCGGA+AGG | + | chr1.4:65056827-65056846 | None:intergenic | 60.0% |
| !! | GATGGGAGAGGTGTTGGTGG+TGG | + | chr1.4:65056835-65056854 | None:intergenic | 60.0% |
| !! | GGAGAGGTGTTGGTGGTGGT+CGG | + | chr1.4:65056831-65056850 | None:intergenic | 60.0% |
| !! | GGTGTTGGTGGTGGTCGGAA+GGG | + | chr1.4:65056826-65056845 | None:intergenic | 60.0% |
| !! | TGGGTGGTGTTACCGGCTTG+GGG | - | chr1.4:65057633-65057652 | MS.gene74997:CDS | 60.0% |
| !! | TGTGGTGGCGGAGAAAGGGT+GGG | - | chr1.4:65057605-65057624 | MS.gene74997:CDS | 60.0% |
| !! | TTGGTGGTGGTCGGAAGGGT+TGG | + | chr1.4:65056822-65056841 | None:intergenic | 60.0% |
| !! | TTGTGGTGGCGGAGAAAGGG+TGG | - | chr1.4:65057604-65057623 | MS.gene74997:CDS | 60.0% |
| ATGCACCGAGACGGTTGGCG+AGG | + | chr1.4:65056897-65056916 | None:intergenic | 65.0% | |
| GAGTGGGAAGGCCGAAGAGG+AGG | - | chr1.4:65057413-65057432 | MS.gene74997:CDS | 65.0% | |
| GCGAGGATGTCGATGCGTCC+TGG | + | chr1.4:65056880-65056899 | None:intergenic | 65.0% | |
| GTGCCATGCACCGAGACGGT+TGG | + | chr1.4:65056902-65056921 | None:intergenic | 65.0% | |
| TGGGAAGGCCGAAGAGGAGG+AGG | - | chr1.4:65057416-65057435 | MS.gene74997:CDS | 65.0% | |
| TTAACCACCGGCCCCCAAGC+CGG | + | chr1.4:65057648-65057667 | None:intergenic | 65.0% | |
| ! | TCGCCAACCGTCTCGGTGCA+TGG | - | chr1.4:65056896-65056915 | MS.gene74997:CDS | 65.0% |
| !! | GGGTGGTGTTACCGGCTTGG+GGG | - | chr1.4:65057634-65057653 | MS.gene74997:CDS | 65.0% |
| !! | GGTGTTACCGGCTTGGGGGC+CGG | - | chr1.4:65057638-65057657 | MS.gene74997:CDS | 70.0% |
| !! | GTTACCGGCTTGGGGGCCGG+TGG | - | chr1.4:65057641-65057660 | MS.gene74997:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 65056637 | 65057965 | 65056637 | ID=MS.gene74997 |
| chr1.4 | mRNA | 65056637 | 65057965 | 65056637 | ID=MS.gene74997.t1;Parent=MS.gene74997 |
| chr1.4 | exon | 65056637 | 65057965 | 65056637 | ID=MS.gene74997.t1.exon1;Parent=MS.gene74997.t1 |
| chr1.4 | CDS | 65056637 | 65057965 | 65056637 | ID=cds.MS.gene74997.t1;Parent=MS.gene74997.t1 |
| Gene Sequence |
| Protein sequence |
