AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene85203


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene85203.t1 MTR_2g100220 81.496 254 20 2 1 227 1 254 7.43e-146 407
MS.gene85203.t1 MTR_2g100220 81.048 248 20 2 1 221 1 248 2.08e-141 397
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene85203.t1 AT3G13740 60.465 215 66 1 23 218 10 224 7.89e-83 247
MS.gene85203.t1 AT1G55140 56.621 219 73 1 22 218 10 228 1.06e-82 246
MS.gene85203.t1 AT3G13740 60.465 215 66 1 23 218 10 224 6.87e-82 245
MS.gene85203.t1 AT3G13740 71.812 149 42 0 70 218 1 149 9.52e-72 216
MS.gene85203.t1 AT3G13740 60.109 183 54 1 23 186 10 192 7.56e-68 207
MS.gene85203.t1 AT3G13740 55.063 158 52 1 23 161 10 167 1.28e-52 168
MS.gene85203.t1 AT1G55140 52.201 159 54 1 22 158 10 168 4.05e-50 161
MS.gene85203.t1 AT3G13740 54.930 142 45 1 23 145 10 151 6.64e-45 147

Find 38 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAACACGATGAAACCTATT+TGG 0.206219 2.4:+4143532 MS.gene85203:CDS
CTCGTCAATGCCTTTGAATT+TGG 0.238218 2.4:+4146935 MS.gene85203:CDS
CTAGGAGCGTTGCGGTTATA+AGG 0.245759 2.4:-4143374 None:intergenic
GGTGAAGAAGATTGTGGTTT+TGG 0.295830 2.4:-4143413 None:intergenic
GCTGCTACCTTAGCTTATAT+TGG 0.304372 2.4:+4143614 MS.gene85203:CDS
GAACGAGGTTTAACGACTTT+AGG 0.348737 2.4:-4143581 None:intergenic
CCTATTTGGGATATGATAGA+TGG 0.357513 2.4:+4143546 MS.gene85203:CDS
CAAGCAAAACTAAGACAAAA+AGG 0.357900 2.4:+4146366 MS.gene85203:CDS
TATTGGTGATTGCATTTATG+AGG 0.357917 2.4:+4143631 MS.gene85203:CDS
CCATCTATCATATCCCAAAT+AGG 0.385713 2.4:-4143546 None:intergenic
GTTTATCTTCTTCATTATCA+TGG 0.401690 2.4:+4143282 MS.gene85203:CDS
TAGGAGCGTTGCGGTTATAA+GGG 0.424850 2.4:-4143373 None:intergenic
AACCAGTAGTAAAAGCTTCA+TGG 0.429937 2.4:+4143333 MS.gene85203:CDS
GTCAATGCCTTTGAATTTGG+AGG 0.436135 2.4:+4146938 MS.gene85203:CDS
TTTCAATTTGGATGAAGAAA+AGG 0.442453 2.4:-4143312 None:intergenic
GAACACGATGAAACCTATTT+GGG 0.451212 2.4:+4143533 MS.gene85203:CDS
GATGAGCTGAACAGTGGATA+AGG 0.458530 2.4:+4147464 MS.gene85203:CDS
TTTGACAAATGTGAATCGCT+TGG 0.467151 2.4:+4146878 MS.gene85203:CDS
TCCTTACGGGTAGAAGGTGC+TGG 0.475784 2.4:-4143434 None:intergenic
ATTGTATTCTTCAATACTCA+AGG 0.493781 2.4:-4144740 None:intergenic
TTTCAGGGATGTTCTTCGAT+GGG 0.502029 2.4:+4146328 MS.gene85203:intron
ATTTCAGGGATGTTCTTCGA+TGG 0.515754 2.4:+4146327 MS.gene85203:intron
ACCAGTAGTAAAAGCTTCAT+GGG 0.516338 2.4:+4143334 MS.gene85203:CDS
ATTAATTCCTCCAAATTCAA+AGG 0.528573 2.4:-4146945 None:intergenic
TTAACGACTTTAGGTGGAGT+TGG 0.531286 2.4:-4143572 None:intergenic
GCAATCACCAATATAAGCTA+AGG 0.541049 2.4:-4143621 None:intergenic
CGAGGTTTAACGACTTTAGG+TGG 0.556732 2.4:-4143578 None:intergenic
AAATTCATCATCATCATGCA+AGG 0.583234 2.4:+4143260 None:intergenic
TTCAGGGATGTTCTTCGATG+GGG 0.583400 2.4:+4146329 MS.gene85203:intron
ATTTCTTATCAGATCAAGAG+AGG 0.597984 2.4:+4145632 MS.gene85203:CDS
TATTCTTCAATACTCAAGGG+TGG 0.605648 2.4:-4144736 None:intergenic
TTGTATTCTTCAATACTCAA+GGG 0.608670 2.4:-4144739 None:intergenic
ACATGCAGCTATATGCTCGT+AGG 0.628628 2.4:+4144701 MS.gene85203:intron
GGTGCTGGTGAAGAAGATTG+TGG 0.630028 2.4:-4143419 None:intergenic
AGCGAACAACTGCCATCACA+CGG 0.636186 2.4:-4144765 None:intergenic
TAGACAGATGAGCTGAACAG+TGG 0.652117 2.4:+4147458 MS.gene85203:intron
AGAATACAATGACCGTGTGA+TGG 0.681673 2.4:+4144753 MS.gene85203:CDS
GATGGCAGTTGTTCGCTGTG+AGG 0.703384 2.4:+4144771 MS.gene85203:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGATAGTATTAAAATTAATA+AGG + chr2.4:4144139-4144158 MS.gene85203:intron 10.0%
!!! AAAAGTTATTTTATTATGAT+TGG + chr2.4:4145095-4145114 MS.gene85203:intron 10.0%
!!! AAAGTTATTTTATTATGATT+GGG + chr2.4:4145096-4145115 MS.gene85203:intron 10.0%
!! AAAGTTATACAAATTAGATA+TGG - chr2.4:4145042-4145061 None:intergenic 15.0%
!! AAGTTATACAAATTAGATAT+GGG - chr2.4:4145041-4145060 None:intergenic 15.0%
!! AGAAAATATTGTTATCAAAT+AGG + chr2.4:4144498-4144517 MS.gene85203:intron 15.0%
!! ATTAGAGAATAATAAATACT+AGG - chr2.4:4143676-4143695 None:intergenic 15.0%
!! ATTTAAATTGAAAACAAAGT+AGG - chr2.4:4144819-4144838 None:intergenic 15.0%
!! TTAAAAAAGTTAGATAAGTA+AGG + chr2.4:4144909-4144928 MS.gene85203:intron 15.0%
!! TTTAAATTGAAAACAAAGTA+GGG - chr2.4:4144818-4144837 None:intergenic 15.0%
!! TTTCAATTTAAATTTACATG+CGG + chr2.4:4144826-4144845 MS.gene85203:intron 15.0%
!!! ACATTTCTTTAATTTTAAAG+TGG + chr2.4:4146507-4146526 MS.gene85203:intron 15.0%
!!! TCTAATTTGTATAACTTTAT+AGG + chr2.4:4145044-4145063 MS.gene85203:intron 15.0%
!!! TTTTGATGAATTTTATTTCA+GGG + chr2.4:4146313-4146332 MS.gene85203:intron 15.0%
!! AAGATTTACATTTATATCAC+TGG - chr2.4:4146469-4146488 None:intergenic 20.0%
!! AATAACAAATAAAATCCAAC+AGG - chr2.4:4145511-4145530 None:intergenic 20.0%
!! AATCAAAATCGTAATACAAT+TGG - chr2.4:4144333-4144352 None:intergenic 20.0%
!! AATGAAATAAGAAATACAAC+TGG + chr2.4:4147107-4147126 MS.gene85203:intron 20.0%
!! AATGACATAAAATAAAGTAG+AGG + chr2.4:4143866-4143885 MS.gene85203:intron 20.0%
!! AGAAGAAACTTCATTAAATA+TGG - chr2.4:4145717-4145736 None:intergenic 20.0%
!! ATAGTTTCAAATAAAAAGCA+CGG - chr2.4:4146069-4146088 None:intergenic 20.0%
!! CAAAAGGAATGTATATTAAA+TGG - chr2.4:4146734-4146753 None:intergenic 20.0%
!! CTTCATTAAATATGGAAAAT+AGG - chr2.4:4145709-4145728 None:intergenic 20.0%
!! GAAAAACTAATGTTAGAATT+GGG + chr2.4:4146900-4146919 MS.gene85203:CDS 20.0%
!!! AATGACTTATGCTTTAAATA+GGG + chr2.4:4145166-4145185 MS.gene85203:intron 20.0%
!!! ATTTCATTTTCTGTTATTTC+TGG - chr2.4:4147095-4147114 None:intergenic 20.0%
!!! CTTTTGATGAATTTTATTTC+AGG + chr2.4:4146312-4146331 MS.gene85203:intron 20.0%
!!! GAAATTTTTGTTATCTACAT+AGG + chr2.4:4147139-4147158 MS.gene85203:intron 20.0%
!!! TAATGACTTATGCTTTAAAT+AGG + chr2.4:4145165-4145184 MS.gene85203:intron 20.0%
!!! TATATATTTTCCAAACTTTG+TGG + chr2.4:4144214-4144233 MS.gene85203:intron 20.0%
!!! TCCTATTTGTTATTTTCAAT+TGG + chr2.4:4144061-4144080 MS.gene85203:intron 20.0%
!!! TTTCATTTTCTGTTATTTCT+GGG - chr2.4:4147094-4147113 None:intergenic 20.0%
!!! TTTTTTCAACAACATATCAA+GGG + chr2.4:4144402-4144421 MS.gene85203:intron 20.0%
!!! TTTTTTTCAACAACATATCA+AGG + chr2.4:4144401-4144420 MS.gene85203:intron 20.0%
! AAAAAAAGCAAACATACTTC+TGG + chr2.4:4146166-4146185 MS.gene85203:intron 25.0%
! AAATAACAAATAGGATGCAA+AGG - chr2.4:4144056-4144075 None:intergenic 25.0%
! AAATAAGAAGATCTTTGAGT+TGG + chr2.4:4144100-4144119 MS.gene85203:intron 25.0%
! AAGTTTACAAAGAAGAGAAA+TGG - chr2.4:4145283-4145302 None:intergenic 25.0%
! AATAACAAATAGGATGCAAA+GGG - chr2.4:4144055-4144074 None:intergenic 25.0%
! AATATCAGTTAAGAAACAGA+AGG - chr2.4:4145436-4145455 None:intergenic 25.0%
! ACACTATTTAATATCACAAG+AGG - chr2.4:4147168-4147187 None:intergenic 25.0%
! ACATAAAATAAAGTAGAGGA+AGG + chr2.4:4143870-4143889 MS.gene85203:intron 25.0%
! AGTTTACAAAGAAGAGAAAT+GGG - chr2.4:4145282-4145301 None:intergenic 25.0%
! ATATCAAGGGAAAAATTGAT+AGG + chr2.4:4144415-4144434 MS.gene85203:intron 25.0%
! ATATCAGTTAAGAAACAGAA+GGG - chr2.4:4145435-4145454 None:intergenic 25.0%
! ATATGAAGATTTATCCTTGT+TGG + chr2.4:4145775-4145794 MS.gene85203:intron 25.0%
! ATCATGAGATAAACTCTATA+GGG - chr2.4:4145843-4145862 None:intergenic 25.0%
! ATTAACAAAACTTCCTTAGA+TGG + chr2.4:4147372-4147391 MS.gene85203:intron 25.0%
! ATTAATTCCTCCAAATTCAA+AGG - chr2.4:4146948-4146967 None:intergenic 25.0%
! ATTATTCCTATCAAACTATC+TGG - chr2.4:4146767-4146786 None:intergenic 25.0%
! ATTGTATTCTTCAATACTCA+AGG - chr2.4:4144743-4144762 None:intergenic 25.0%
! CATAAATCATGATTTACTTC+TGG - chr2.4:4145140-4145159 None:intergenic 25.0%
! CATGTAATGTAATACAAGTT+GGG - chr2.4:4147230-4147249 None:intergenic 25.0%
! GAAATTGCAAAATAATCATG+TGG - chr2.4:4146686-4146705 None:intergenic 25.0%
! GATACACATTGTAATTAGAT+TGG - chr2.4:4145559-4145578 None:intergenic 25.0%
! GCCAATTGAAAATAACAAAT+AGG - chr2.4:4144065-4144084 None:intergenic 25.0%
! GGAAAAACTAATGTTAGAAT+TGG + chr2.4:4146899-4146918 MS.gene85203:CDS 25.0%
! GGACTATTACTTTAAATTGT+AGG + chr2.4:4144180-4144199 MS.gene85203:intron 25.0%
! GTTTATCTTCTTCATTATCA+TGG + chr2.4:4143282-4143301 MS.gene85203:CDS 25.0%
! TAATTATTCGTACCAAACAA+AGG + chr2.4:4143692-4143711 MS.gene85203:intron 25.0%
! TAGAGTTGAAGTATAAGATT+TGG + chr2.4:4144584-4144603 MS.gene85203:intron 25.0%
! TATGAAGATTTATCCTTGTT+GGG + chr2.4:4145776-4145795 MS.gene85203:intron 25.0%
! TCTTAATTTCTATGACGATT+GGG + chr2.4:4143966-4143985 MS.gene85203:intron 25.0%
! TGTGATATTAAATAGTGTTC+TGG + chr2.4:4147170-4147189 MS.gene85203:intron 25.0%
! TTGTATTACATTACATGGTA+GGG + chr2.4:4147233-4147252 MS.gene85203:intron 25.0%
! TTGTATTCTTCAATACTCAA+GGG - chr2.4:4144742-4144761 None:intergenic 25.0%
! TTTCAATTTGGATGAAGAAA+AGG - chr2.4:4143315-4143334 None:intergenic 25.0%
!! AACACTTTTCAGATCATAAA+AGG - chr2.4:4146806-4146825 None:intergenic 25.0%
!! ATGACTTATGCTTTAAATAG+GGG + chr2.4:4145167-4145186 MS.gene85203:intron 25.0%
!!! ACAAATTTTTGAGCTTATAG+CGG - chr2.4:4144555-4144574 None:intergenic 25.0%
!!! ATCTGGTTTTCAATTACAAA+AGG - chr2.4:4146750-4146769 None:intergenic 25.0%
!!! CTGTTTCTTAACTGATATTT+TGG + chr2.4:4145437-4145456 MS.gene85203:intron 25.0%
!!! GTTAGAATATGTTACTTTCA+GGG + chr2.4:4145654-4145673 MS.gene85203:intron 25.0%
!!! TTTTACTACTGGTTTCAATT+TGG - chr2.4:4143327-4143346 None:intergenic 25.0%
AAAACTTCCTTAGATGGAAT+GGG + chr2.4:4147378-4147397 MS.gene85203:intron 30.0%
AACTTCCTAAATCCCAATTA+GGG - chr2.4:4145009-4145028 None:intergenic 30.0%
AAGGAAAACAAAGCTAAATG+TGG + chr2.4:4144158-4144177 MS.gene85203:intron 30.0%
AGGAAAACAAAGCTAAATGT+GGG + chr2.4:4144159-4144178 MS.gene85203:intron 30.0%
ATCCTGCAAACAAACAAAAA+AGG - chr2.4:4145584-4145603 None:intergenic 30.0%
ATTCTAGTGCTAGTTCAATA+GGG + chr2.4:4146216-4146235 MS.gene85203:intron 30.0%
ATTTCTTATCAGATCAAGAG+AGG + chr2.4:4145632-4145651 MS.gene85203:CDS 30.0%
CAAGCAAAACTAAGACAAAA+AGG + chr2.4:4146366-4146385 MS.gene85203:CDS 30.0%
CCAACTTGTATTACATTACA+TGG + chr2.4:4147228-4147247 MS.gene85203:intron 30.0%
CCATGTAATGTAATACAAGT+TGG - chr2.4:4147231-4147250 None:intergenic 30.0%
CTTACGAATTCAAAATCTTC+TGG - chr2.4:4143798-4143817 None:intergenic 30.0%
CTTGTATTACATTACATGGT+AGG + chr2.4:4147232-4147251 MS.gene85203:intron 30.0%
GATCATGAGATAAACTCTAT+AGG - chr2.4:4145844-4145863 None:intergenic 30.0%
GATCGAAACTTACTCTAATA+CGG + chr2.4:4147050-4147069 MS.gene85203:intron 30.0%
GTCTTAATTTCTATGACGAT+TGG + chr2.4:4143965-4143984 MS.gene85203:intron 30.0%
TAAATTTACATGCGGAAAGA+CGG + chr2.4:4144834-4144853 MS.gene85203:intron 30.0%
TAACTTCCTAAATCCCAATT+AGG - chr2.4:4145010-4145029 None:intergenic 30.0%
TAGTAAGTTCCTTCAAACTT+CGG + chr2.4:4146435-4146454 MS.gene85203:intron 30.0%
TATTCTAGTGCTAGTTCAAT+AGG + chr2.4:4146215-4146234 MS.gene85203:intron 30.0%
TGAAAACCAGATAGTTTGAT+AGG + chr2.4:4146758-4146777 MS.gene85203:intron 30.0%
TGCTTATTGAATTTCTCTTG+TGG - chr2.4:4145212-4145231 None:intergenic 30.0%
TTCTCTTCTTTGTAAACTTC+AGG + chr2.4:4145284-4145303 MS.gene85203:intron 30.0%
! CAGAAGATTTTGAATTCGTA+AGG + chr2.4:4143796-4143815 MS.gene85203:intron 30.0%
! CGGAAATGTAATTTTCCTTA+CGG - chr2.4:4143451-4143470 None:intergenic 30.0%
! GCTTTTGCAAATACAAACTT+AGG - chr2.4:4145317-4145336 None:intergenic 30.0%
! GGAAATGTAATTTTCCTTAC+GGG - chr2.4:4143450-4143469 None:intergenic 30.0%
! TATTGGTGATTGCATTTATG+AGG + chr2.4:4143631-4143650 MS.gene85203:CDS 30.0%
! TCTTCAATTTTGCCTATAGT+GGG - chr2.4:4143500-4143519 None:intergenic 30.0%
! TTCTTCAATTTTGCCTATAG+TGG - chr2.4:4143501-4143520 None:intergenic 30.0%
!! ATGTTCTGAAATCTGTGTTA+AGG + chr2.4:4145962-4145981 MS.gene85203:intron 30.0%
!! GGTTAGAATATGTTACTTTC+AGG + chr2.4:4145653-4145672 MS.gene85203:intron 30.0%
!!! CTTAACTGATATTTTGGTCA+AGG + chr2.4:4145443-4145462 MS.gene85203:intron 30.0%
AAACAAGAAGCAGCAGAAAA+TGG - chr2.4:4145408-4145427 None:intergenic 35.0%
AAATTTACATGCGGAAAGAC+GGG + chr2.4:4144835-4144854 MS.gene85203:intron 35.0%
AACCAGTAGTAAAAGCTTCA+TGG + chr2.4:4143333-4143352 MS.gene85203:CDS 35.0%
ACAAAATTGCAGTGAGCTAT+TGG + chr2.4:4143933-4143952 MS.gene85203:intron 35.0%
ACACTCAGCATGATAAAAGT+TGG + chr2.4:4146248-4146267 MS.gene85203:intron 35.0%
ACCAGTAGTAAAAGCTTCAT+GGG + chr2.4:4143334-4143353 MS.gene85203:CDS 35.0%
ACTATCTACGACAACAATTG+AGG - chr2.4:4144126-4144145 None:intergenic 35.0%
AGAACACGATGAAACCTATT+TGG + chr2.4:4143532-4143551 MS.gene85203:CDS 35.0%
AGATTTCAGAACATCACACT+AGG - chr2.4:4145956-4145975 None:intergenic 35.0%
CAAAACTTCCTTAGATGGAA+TGG + chr2.4:4147377-4147396 MS.gene85203:intron 35.0%
CAACCTAGTTCAATAGACAT+TGG - chr2.4:4146848-4146867 None:intergenic 35.0%
CAATGTCTATTGAACTAGGT+TGG + chr2.4:4146846-4146865 MS.gene85203:intron 35.0%
CCATCTATCATATCCCAAAT+AGG - chr2.4:4143549-4143568 None:intergenic 35.0%
CTCTAATACGGCTGAAAAAT+AGG + chr2.4:4147062-4147081 MS.gene85203:intron 35.0%
CTGTCTAGAAGTTGAAAGAA+AGG - chr2.4:4147445-4147464 None:intergenic 35.0%
GAAAACTCTACCACAAAGTT+TGG - chr2.4:4144227-4144246 None:intergenic 35.0%
GAACACGATGAAACCTATTT+GGG + chr2.4:4143533-4143552 MS.gene85203:CDS 35.0%
GCAATCACCAATATAAGCTA+AGG - chr2.4:4143624-4143643 None:intergenic 35.0%
GTAGATAAGTTAACCGATAG+TGG + chr2.4:4143767-4143786 MS.gene85203:intron 35.0%
TAGCAGAATTGTGGCATAAT+TGG - chr2.4:4146197-4146216 None:intergenic 35.0%
TATCTCATGATCCTGAAAAC+AGG + chr2.4:4145852-4145871 MS.gene85203:intron 35.0%
TATTCTTCAATACTCAAGGG+TGG - chr2.4:4144739-4144758 None:intergenic 35.0%
TGTAATTCCCATTCCATCTA+AGG - chr2.4:4147388-4147407 None:intergenic 35.0%
TTCTAGTGCTAGTTCAATAG+GGG + chr2.4:4146217-4146236 MS.gene85203:intron 35.0%
TTTGACAAATGTGAATCGCT+TGG + chr2.4:4146878-4146897 MS.gene85203:CDS 35.0%
! ATGGAAAATAGGCGTGTTTT+GGG - chr2.4:4145698-4145717 None:intergenic 35.0%
! ATTTTCATCTGTCTCATGGT+TGG + chr2.4:4146099-4146118 MS.gene85203:intron 35.0%
! CAGCAGAAAATGGTGATTTT+GGG - chr2.4:4145398-4145417 None:intergenic 35.0%
! CCTATTTGGGATATGATAGA+TGG + chr2.4:4143546-4143565 MS.gene85203:CDS 35.0%
! GACTTTTGTGTAGAAATGTC+CGG + chr2.4:4146022-4146041 MS.gene85203:intron 35.0%
! TAATTTTCCTTACGGGTAGA+AGG - chr2.4:4143443-4143462 None:intergenic 35.0%
! TATGGAAAATAGGCGTGTTT+TGG - chr2.4:4145699-4145718 None:intergenic 35.0%
! TGAGATTTTCATCTGTCTCA+TGG + chr2.4:4146095-4146114 MS.gene85203:intron 35.0%
!!! AACTGATATTTTGGTCAAGG+AGG + chr2.4:4145446-4145465 MS.gene85203:intron 35.0%
!!! GTCCTTTTTTGTTTGTTTGC+AGG + chr2.4:4145579-4145598 MS.gene85203:intron 35.0%
!!! TTTCTTATTTTCGCCCAACA+AGG - chr2.4:4145792-4145811 None:intergenic 35.0%
ACCAAACAAAGGTTCTGTTG+CGG + chr2.4:4143703-4143722 MS.gene85203:intron 40.0%
ACGCCAATGTCTATTGAACT+AGG + chr2.4:4146842-4146861 MS.gene85203:intron 40.0%
AGAACATCACACTAGGTTTC+AGG - chr2.4:4145949-4145968 None:intergenic 40.0%
AGAATACAATGACCGTGTGA+TGG + chr2.4:4144753-4144772 MS.gene85203:CDS 40.0%
AGACATTGGCGTTAGAAAAC+AGG - chr2.4:4146834-4146853 None:intergenic 40.0%
AGACTCATGTCACCCTAATT+GGG + chr2.4:4144994-4145013 MS.gene85203:intron 40.0%
AGGGGAAAAAGACATCATTC+AGG + chr2.4:4145185-4145204 MS.gene85203:intron 40.0%
AGTTTCGATCAAAGTTCGAC+TGG - chr2.4:4147040-4147059 None:intergenic 40.0%
ATTTCAGGGATGTTCTTCGA+TGG + chr2.4:4146327-4146346 MS.gene85203:intron 40.0%
CATGATCCTGAAAACAGGAT+TGG + chr2.4:4145857-4145876 MS.gene85203:intron 40.0%
CTCGTCAATGCCTTTGAATT+TGG + chr2.4:4146935-4146954 MS.gene85203:CDS 40.0%
GAAATACAACTGGAGTGTGT+CGG + chr2.4:4147117-4147136 MS.gene85203:intron 40.0%
GAACGAGGTTTAACGACTTT+AGG - chr2.4:4143584-4143603 None:intergenic 40.0%
GAATACTCAGTAGTCAGTTC+TGG + chr2.4:4147325-4147344 MS.gene85203:intron 40.0%
GATGAGAAACCGAAGTTTGA+AGG - chr2.4:4146447-4146466 None:intergenic 40.0%
GCACTAGAATAGCAGAATTG+TGG - chr2.4:4146206-4146225 None:intergenic 40.0%
GCAGCATTAAAAACAGAACG+AGG - chr2.4:4143599-4143618 None:intergenic 40.0%
GCTGCTACCTTAGCTTATAT+TGG + chr2.4:4143614-4143633 MS.gene85203:CDS 40.0%
GGGGAAAAAGACATCATTCA+GGG + chr2.4:4145186-4145205 MS.gene85203:intron 40.0%
GTCAATGCCTTTGAATTTGG+AGG + chr2.4:4146938-4146957 MS.gene85203:CDS 40.0%
GTTGCACAGTTAGCCATTAA+CGG + chr2.4:4146653-4146672 MS.gene85203:intron 40.0%
GTTTCGATCAAAGTTCGACT+GGG - chr2.4:4147039-4147058 None:intergenic 40.0%
TAGACGAAACCAATAAGCAG+CGG + chr2.4:4146136-4146155 MS.gene85203:intron 40.0%
TAGTTTCTCTCACCTTGGTT+GGG + chr2.4:4144264-4144283 MS.gene85203:intron 40.0%
TGTCACCCTAATTGGGATTT+AGG + chr2.4:4145001-4145020 MS.gene85203:intron 40.0%
TTAACGACTTTAGGTGGAGT+TGG - chr2.4:4143575-4143594 None:intergenic 40.0%
TTACATTACATGGTAGGGCA+AGG + chr2.4:4147238-4147257 MS.gene85203:intron 40.0%
TTCAAAACTCCGCTGCTTAT+TGG - chr2.4:4146148-4146167 None:intergenic 40.0%
TTTCAGGGATGTTCTTCGAT+GGG + chr2.4:4146328-4146347 MS.gene85203:intron 40.0%
! AATGTGAGTTTGACTTCAGC+CGG + chr2.4:4145475-4145494 MS.gene85203:intron 40.0%
! AGAACACCAATCCTGTTTTC+AGG - chr2.4:4145866-4145885 None:intergenic 40.0%
! GCAGCAGAAAATGGTGATTT+TGG - chr2.4:4145399-4145418 None:intergenic 40.0%
! GGTGAAGAAGATTGTGGTTT+TGG - chr2.4:4143416-4143435 None:intergenic 40.0%
! TCCCATGAAGCTTTTACTAC+TGG - chr2.4:4143338-4143357 None:intergenic 40.0%
! TGGAAAATAGGCGTGTTTTG+GGG - chr2.4:4145697-4145716 None:intergenic 40.0%
!! ATTTTGCCTATAGTGGGAAG+TGG - chr2.4:4143494-4143513 None:intergenic 40.0%
!! GGTGTTCTGAAATCTGTGTT+GGG + chr2.4:4145878-4145897 MS.gene85203:intron 40.0%
!! GTGTTCTGAAATCTGTGTTG+GGG + chr2.4:4145879-4145898 MS.gene85203:intron 40.0%
!! TCTTCTGGCTTATCCACTAT+CGG - chr2.4:4143783-4143802 None:intergenic 40.0%
!! TGGTGTTCTGAAATCTGTGT+TGG + chr2.4:4145877-4145896 MS.gene85203:intron 40.0%
!! TTGTTACTCTCTGAGACTTC+AGG + chr2.4:4144014-4144033 MS.gene85203:intron 40.0%
!!! GAAGAAGATTGTGGTTTTGG+TGG - chr2.4:4143413-4143432 None:intergenic 40.0%
ACATGCAGCTATATGCTCGT+AGG + chr2.4:4144701-4144720 MS.gene85203:intron 45.0%
AGGGTGACATGAGTCTGAAA+TGG - chr2.4:4144990-4145009 None:intergenic 45.0%
AGTAGAGGAAGGAACCCTAT+TGG + chr2.4:4143881-4143900 MS.gene85203:intron 45.0%
AGTGTTCTGGTAGTACAAGC+TGG + chr2.4:4147183-4147202 MS.gene85203:intron 45.0%
AGTTTCTCTCACCTTGGTTG+GGG + chr2.4:4144265-4144284 MS.gene85203:intron 45.0%
ATATGTTTCCACCCCAACCA+AGG - chr2.4:4144279-4144298 None:intergenic 45.0%
ATTACATGGTAGGGCAAGGA+GGG + chr2.4:4147242-4147261 MS.gene85203:intron 45.0%
CAATAGAAAGCTGCAGTGCT+GGG - chr2.4:4146992-4147011 None:intergenic 45.0%
CAGACTCATGTCACCCTAAT+TGG + chr2.4:4144993-4145012 MS.gene85203:intron 45.0%
CCAAGGTGAGAGAAACTACA+CGG - chr2.4:4144262-4144281 None:intergenic 45.0%
CGAGGTTTAACGACTTTAGG+TGG - chr2.4:4143581-4143600 None:intergenic 45.0%
GCGACTTAAACTACCAGTTC+CGG - chr2.4:4146044-4146063 None:intergenic 45.0%
GGTTGGGGTGGAAACATATA+TGG + chr2.4:4144280-4144299 MS.gene85203:intron 45.0%
GTAGTTTCTCTCACCTTGGT+TGG + chr2.4:4144263-4144282 MS.gene85203:intron 45.0%
GTCTGGATGTACTGCCAATA+GGG - chr2.4:4143898-4143917 None:intergenic 45.0%
GTGCATGCTGCAAAAATGTC+TGG - chr2.4:4143915-4143934 None:intergenic 45.0%
GTGTTCTGGTAGTACAAGCT+GGG + chr2.4:4147184-4147203 MS.gene85203:intron 45.0%
TAGACAGATGAGCTGAACAG+TGG + chr2.4:4147458-4147477 MS.gene85203:intron 45.0%
TATAGGGAGCAGTTCAAGAG+AGG - chr2.4:4145827-4145846 None:intergenic 45.0%
TCAATAGAAAGCTGCAGTGC+TGG - chr2.4:4146993-4147012 None:intergenic 45.0%
TCCAACAGGAAATCACTAGC+CGG - chr2.4:4145497-4145516 None:intergenic 45.0%
TCCGCAACAGAACCTTTGTT+TGG - chr2.4:4143707-4143726 None:intergenic 45.0%
TGTCTGGATGTACTGCCAAT+AGG - chr2.4:4143899-4143918 None:intergenic 45.0%
TGTGTAGAAATGTCCGGAAC+TGG + chr2.4:4146028-4146047 MS.gene85203:intron 45.0%
TTCAGGGATGTTCTTCGATG+GGG + chr2.4:4146329-4146348 MS.gene85203:intron 45.0%
! ACTAAGACAAAAAGGCGTGC+TGG + chr2.4:4146374-4146393 MS.gene85203:CDS 45.0%
! GGGTGACATGAGTCTGAAAT+GGG - chr2.4:4144989-4145008 None:intergenic 45.0%
! GGTGGTTGAGTGAGTTTTCT+AGG - chr2.4:4143395-4143414 None:intergenic 45.0%
!! ACAAGTTGGGAGTATCTGTC+TGG - chr2.4:4147217-4147236 None:intergenic 45.0%
!! GGAAAATAGGCGTGTTTTGG+GGG - chr2.4:4145696-4145715 None:intergenic 45.0%
!! TAGGAGCGTTGCGGTTATAA+GGG - chr2.4:4143376-4143395 None:intergenic 45.0%
!!! TGAGTTTTCTAGGAGCGTTG+CGG - chr2.4:4143385-4143404 None:intergenic 45.0%
!!! TGTCGCTTTTCGTGTGTTTG+AGG - chr2.4:4144447-4144466 None:intergenic 45.0%
AGCGAACAACTGCCATCACA+CGG - chr2.4:4144768-4144787 None:intergenic 50.0%
AGTGGCGCGTTTGAGAAGAT+CGG - chr2.4:4143471-4143490 None:intergenic 50.0%
CACAGTTAGCCATTAACGGC+TGG + chr2.4:4146657-4146676 MS.gene85203:intron 50.0%
CATTACATGGTAGGGCAAGG+AGG + chr2.4:4147241-4147260 MS.gene85203:intron 50.0%
CCGTGTAGTTTCTCTCACCT+TGG + chr2.4:4144259-4144278 MS.gene85203:intron 50.0%
!! CTAGGAGCGTTGCGGTTATA+AGG - chr2.4:4143377-4143396 None:intergenic 50.0%
!! GGTGCTGGTGAAGAAGATTG+TGG - chr2.4:4143422-4143441 None:intergenic 50.0%
!!! AAATAGGCGTGTTTTGGGGG+AGG - chr2.4:4145693-4145712 None:intergenic 50.0%
ACCAGCACCTTCTACCCGTA+AGG + chr2.4:4143433-4143452 MS.gene85203:intron 55.0%
ATGTGGCAGCCAGCCGTTAA+TGG - chr2.4:4146669-4146688 None:intergenic 55.0%
GATGGCAGTTGTTCGCTGTG+AGG + chr2.4:4144771-4144790 MS.gene85203:CDS 55.0%
GCCACTCCACTTCCCACTAT+AGG + chr2.4:4143485-4143504 MS.gene85203:intron 55.0%
GCCGGCTAGTGATTTCCTGT+TGG + chr2.4:4145493-4145512 MS.gene85203:intron 55.0%
TTCTCTCACCTTGGTTGGGG+TGG + chr2.4:4144268-4144287 MS.gene85203:intron 55.0%
! GCCTATAGTGGGAAGTGGAG+TGG - chr2.4:4143489-4143508 None:intergenic 55.0%
! TCCTTACGGGTAGAAGGTGC+TGG - chr2.4:4143437-4143456 None:intergenic 55.0%
! AGAAAGCTGCAGTGCTGGGC+TGG - chr2.4:4146988-4147007 None:intergenic 60.0%
!!! AGGCGTGTTTTGGGGGAGGA+GGG - chr2.4:4145689-4145708 None:intergenic 60.0%
!!! TAGGCGTGTTTTGGGGGAGG+AGG - chr2.4:4145690-4145709 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 4143275 4147484 4143275 ID=MS.gene85203
chr2.4 mRNA 4143275 4147484 4143275 ID=MS.gene85203.t1;Parent=MS.gene85203
chr2.4 exon 4143275 4143449 4143275 ID=MS.gene85203.t1.exon1;Parent=MS.gene85203.t1
chr2.4 CDS 4143275 4143449 4143275 ID=cds.MS.gene85203.t1;Parent=MS.gene85203.t1
chr2.4 exon 4143519 4143652 4143519 ID=MS.gene85203.t1.exon2;Parent=MS.gene85203.t1
chr2.4 CDS 4143519 4143652 4143519 ID=cds.MS.gene85203.t1;Parent=MS.gene85203.t1
chr2.4 exon 4144709 4144798 4144709 ID=MS.gene85203.t1.exon3;Parent=MS.gene85203.t1
chr2.4 CDS 4144709 4144798 4144709 ID=cds.MS.gene85203.t1;Parent=MS.gene85203.t1
chr2.4 exon 4145601 4145653 4145601 ID=MS.gene85203.t1.exon4;Parent=MS.gene85203.t1
chr2.4 CDS 4145601 4145653 4145601 ID=cds.MS.gene85203.t1;Parent=MS.gene85203.t1
chr2.4 exon 4146334 4146436 4146334 ID=MS.gene85203.t1.exon5;Parent=MS.gene85203.t1
chr2.4 CDS 4146334 4146436 4146334 ID=cds.MS.gene85203.t1;Parent=MS.gene85203.t1
chr2.4 exon 4146864 4146968 4146864 ID=MS.gene85203.t1.exon6;Parent=MS.gene85203.t1
chr2.4 CDS 4146864 4146968 4146864 ID=cds.MS.gene85203.t1;Parent=MS.gene85203.t1
chr2.4 exon 4147461 4147484 4147461 ID=MS.gene85203.t1.exon7;Parent=MS.gene85203.t1
chr2.4 CDS 4147461 4147484 4147461 ID=cds.MS.gene85203.t1;Parent=MS.gene85203.t1
Gene Sequence

>MS.gene85203

ATGCAAGGTTTATCTTCTTCATTATCATGGTCAATAACCTTTTCTTCATCCAAATTGAAACCAGTAGTAAAAGCTTCATGGGACACACAACAAAGACTCCCTTATAACCGCAACGCTCCTAGAAAACTCACTCAACCACCAAAACCACAATCTTCTTCACCAGCACCTTCTACCCGTAAGGAAAATTACATTTCCGATCTTCTCAAACGCGCCACTCCACTTCCCACTATAGGCAAAATTGAAGAACAGCAACAACAAGAACACGATGAAACCTATTTGGGATATGATAGATGGCTTCCAACTCCACCTAAAGTCGTTAAACCTCGTTCTGTTTTTAATGCTGCTACCTTAGCTTATATTGGTGATTGCATTTATGAGGTAACGTTCTATTCTTAATTCCTAGTATTTATTATTCTCTAATTATTCGTACCAAACAAAGGTTCTGTTGCGGATAATTGCTGATAACTGATAAGCTAGCTGACATAGTTAATAGTAGATAAGTTAACCGATAGTGGATAAGCCAGAAGATTTTGAATTCGTAAGGTTTAGTAAAATTTGTTATTGAACTAGTCAACTAGCTGATGAATATGAAATGACATAAAATAAAGTAGAGGAAGGAACCCTATTGGCAGTACATCCAGACATTTTTGCAGCATGCACAAAATTGCAGTGAGCTATTGGTTTGTATTCGTCTTAATTTCTATGACGATTGGGAGCGTTTCTTCAAAGTCAAATCTTATTGTTACTCTCTGAGACTTCAGGCTCTCGAAGAGAAAGCCCTTTGCATCCTATTTGTTATTTTCAATTGGCGACTGAGTTTGTTTCAAATAAGAAGATCTTTGAGTTGGCCTCAATTGTTGTCGTAGATAGTATTAAAATTAATAAGGAAAACAAAGCTAAATGTGGGACTATTACTTTAAATTGTAGGAGTATTTTATTTATATATTTTCCAAACTTTGTGGTAGAGTTTTCTATGAGTGAAGTCCGTGTAGTTTCTCTCACCTTGGTTGGGGTGGAAACATATATGGCTAGCTTTCAAAGTTATGATGAATATACCAATTGTATTACGATTTTGATTATTGATGATATGACATAATGTTTGTTTTGCAAAAAATTATCATTATTATTTTTTTCAACAACATATCAAGGGAAAAATTGATAGGCTATAACCTCAAACACACGAAAAGCGACATAAACTAGTAAAAAGAAGCTAAAAGCTCATGAGAAAATATTGTTATCAAATAGGTCTATCGTCGTTATATGAGATTATAACATATCCGCTATAAGCTCAAAAATTTGTTTTGTCAAATAGAGTTGAAGTATAAGATTTGGCTACTTGATACTGTAAATTGTATTCATTAAAAAGTCTTGCAATTGTAATGATTTTGAGAAATATTTAGATATCTTATTCTAATTTTTTTGTGAAACATGCAGCTATATGCTCGTAGGCATTTTTTATTTCCACCCTTGAGTATTGAAGAATACAATGACCGTGTGATGGCAGTTGTTCGCTGTGAGGCTCAAGTATGATTACTTTCTTCCCTACTTTGTTTTCAATTTAAATTTACATGCGGAAAGACGGGCATAGCAGATTTATGTATTAATCTTATCGTGTTTTGTTGTGTAATACTGATTTAAAAAAGTTAGATAAGTAAGGTGCTAGTTATTGTACAGTTGTACTGATTGTGATGATGACAATTTTATATTAATACCCATTTCAGACTCATGTCACCCTAATTGGGATTTAGGAAGTTATTTTTCATCCCATATCTAATTTGTATAACTTTATAGGCATGAGATTTGTTCAATAGTTTCTTTGAAAAAGTTATTTTATTATGATTGGGTTGTTGATCTTTTTGTCACCAGAAGTAAATCATGATTTATGTTAGTTAATGACTTATGCTTTAAATAGGGGAAAAAGACATCATTCAGGGCCACAAGAGAAATTCAATAAGCACATTTCATATTGAATTTTCATAATGAGATCATATAGTTAGCTTTTCTCCCATTTCTCTTCTTTGTAAACTTCAGGCGCTTTACCTAAGTTTGTATTTGCAAAAGCTTTTTCATTTTCTAAGTGACATACGCACACACTTTCTTTTCACTGCAAGTGTTTTTCTCCCAAAATCACCATTTTCTGCTGCTTCTTGTTTTTTTCCCTTCTGTTTCTTAACTGATATTTTGGTCAAGGAGGCAAAACAATGTGAGTTTGACTTCAGCCGGCTAGTGATTTCCTGTTGGATTTTATTTGTTATTACTAATTAACAGCAAAAACATGTTTCCAATCTAATTACAATGTGTATCGTCCTTTTTTGTTTGTTTGCAGGATGCATTGCTTCAGAAACTTCTGAACAGTGATTTCTTATCAGATCAAGAGAGGTTAGAATATGTTACTTTCAGGGTCTCATTATCCCTCCTCCCCCAAAACACGCCTATTTTCCATATTTAATGAAGTTTCTTCTTATAAAGATTCTGAAAAAAACAAGTGCACTTAACTTTCATATGAAGATTTATCCTTGTTGGGCGAAAATAAGAAAATGAATGTTCTGCCTCTCTTGAACTGCTCCCTATAGAGTTTATCTCATGATCCTGAAAACAGGATTGGTGTTCTGAAATCTGTGTTGGGGTTTTGTTAAATGAACAACTTGCAAGATGACTTTTGTTAAATGATCCTGAAACCTAGTGTGATGTTCTGAAATCTGTGTTAAGGTTTTGTTAAATGAACAACAGTGAACTGCTTGCAAGATGACTTTTGTGTAGAAATGTCCGGAACTGGTAGTTTAAGTCGCATCCGTGCTTTTTATTTGAAACTATATTTGATGAGATTTTCATCTGTCTCATGGTTGGTACATGATAATGATTAGACGAAACCAATAAGCAGCGGAGTTTTGAAAAAAAGCAAACATACTTCTGGATATGCCAATTATGCCACAATTCTGCTATTCTAGTGCTAGTTCAATAGGGGATTTAGACACACTCAGCATGATAAAAGTTGGTAGATTGTGAGAGATCTGTTAATTTCTATCATAGCTTATAGCTTTTGATGAATTTTATTTCAGGGATGTTCTTCGATGGGGAAAGAACATTATTTCAAGCAAAACTAAGACAAAAAGGCGTGCTGGTGCAGCTGTGTATAACAGAGCGTCTTCATTAGAAACATTAGTAAGTTCCTTCAAACTTCGGTTTCTCATCCAGTGATATAAATGTAAATCTTTTAGCAAGTTTTGTTTCTACATTTCTTTAATTTTAAAGTGGTGATGACAACTGCAACTTTCTAATTTCATTAAATATTGATTTTAAATACAACTAATATAGTGCATGATATGTGTGTGTGTTCTATTACATGTTAGTGTGAGTTTTTTATTTGTATATTTATATGTTGCACAGTTAGCCATTAACGGCTGGCTGCCACATGATTATTTTGCAATTTCAGCTTGATTGTGTGTTGCTCGATATCCATTTAATATACATTCCTTTTGTAATTGAAAACCAGATAGTTTGATAGGAATAATCTGAAACAAAGCATTTCCTTTTATGATCTGAAAAGTGTTTTCAGCCTGTTTTCTAACGCCAATGTCTATTGAACTAGGTTGGCTATCTCTATTTGACAAATGTGAATCGCTTGGAAAAACTAATGTTAGAATTGGGATTCTCAGTAGACTCGTCAATGCCTTTGAATTTGGAGGAATTAATAGTAAGTTTTATATCATCCAGCCCAGCACTGCAGCTTTCTATTGATTTTATTGTTTCATTTTTGCTCTCCCAGTCGAACTTTGATCGAAACTTACTCTAATACGGCTGAAAAATAGGAATTAACCCAGAAATAACAGAAAATGAAATAAGAAATACAACTGGAGTGTGTCGGAAATTTTTGTTATCTACATAGGAGACCTCTTGTGATATTAAATAGTGTTCTGGTAGTACAAGCTGGGAGTACTACCAGACAGATACTCCCAACTTGTATTACATTACATGGTAGGGCAAGGAGGGAAAATTGATACAAGATTTTGTTGCAGCTATCGTGTATCAGCACATTTTAAATTATGAAAAGAATACTCAGTAGTCAGTTCTGGCAACAATTGTTATGTAATCTTAATATTAACAAAACTTCCTTAGATGGAATGGGAATTACAACTGCTAATTAATGTTTCACTTGCTAATATTTGTCCTTTCTTTCAACTTCTAGACAGATGAGCTGAACAGTGGATAA

Protein sequence

>MS.gene85203.t1

MQGLSSSLSWSITFSSSKLKPVVKASWDTQQRLPYNRNAPRKLTQPPKPQSSSPAPSTQQQQQEHDETYLGYDRWLPTPPKVVKPRSVFNAATLAYIGDCIYELYARRHFLFPPLSIEEYNDRVMAVVRCEAQDALLQKLLNSDFLSDQERDVLRWGKNIISSKTKTKRRAGAAVYNRASSLETLVGYLYLTNVNRLEKLMLELGFSVDSSMPLNLEELITDELNSG