Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene85203.t1 | XP_013465491.1 | 80.3 | 254 | 23 | 2 | 1 | 227 | 1 | 254 | 3.40E-101 | 377.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene85203.t1 | P74327 | 46.3 | 108 | 53 | 2 | 94 | 201 | 30 | 132 | 5.8e-17 | 89.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene85203.t1 | A0A072VD47 | 80.3 | 254 | 23 | 2 | 1 | 227 | 1 | 254 | 2.4e-101 | 377.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049137 | MS.gene85203 | 0.808497 | 3.01E-50 | -1.69E-46 |
MS.gene049171 | MS.gene85203 | 0.807836 | 4.16E-50 | -1.69E-46 |
MS.gene049257 | MS.gene85203 | 0.803897 | 2.80E-49 | -1.69E-46 |
MS.gene050593 | MS.gene85203 | 0.804234 | 2.38E-49 | -1.69E-46 |
MS.gene050670 | MS.gene85203 | 0.807057 | 6.09E-50 | -1.69E-46 |
MS.gene050812 | MS.gene85203 | 0.855534 | 5.92E-62 | -1.69E-46 |
MS.gene05081 | MS.gene85203 | 0.841717 | 4.01E-58 | -1.69E-46 |
MS.gene051244 | MS.gene85203 | 0.804346 | 2.26E-49 | -1.69E-46 |
MS.gene051387 | MS.gene85203 | 0.808879 | 2.49E-50 | -1.69E-46 |
MS.gene051525 | MS.gene85203 | 0.800574 | 1.35E-48 | -1.69E-46 |
MS.gene051666 | MS.gene85203 | 0.82441 | 8.19E-54 | -1.69E-46 |
MS.gene051838 | MS.gene85203 | 0.818555 | 1.84E-52 | -1.69E-46 |
MS.gene052469 | MS.gene85203 | 0.845676 | 3.50E-59 | -1.69E-46 |
MS.gene052870 | MS.gene85203 | 0.843851 | 1.09E-58 | -1.69E-46 |
MS.gene052872 | MS.gene85203 | 0.837171 | 6.08E-57 | -1.69E-46 |
MS.gene053107 | MS.gene85203 | 0.828468 | 8.84E-55 | -1.69E-46 |
MS.gene053479 | MS.gene85203 | 0.816879 | 4.40E-52 | -1.69E-46 |
MS.gene053579 | MS.gene85203 | 0.819837 | 9.42E-53 | -1.69E-46 |
MS.gene053824 | MS.gene85203 | 0.80008 | 1.70E-48 | -1.69E-46 |
MS.gene054884 | MS.gene85203 | -0.831205 | 1.90E-55 | -1.69E-46 |
MS.gene055206 | MS.gene85203 | 0.834789 | 2.45E-56 | -1.69E-46 |
MS.gene055370 | MS.gene85203 | 0.826095 | 3.27E-54 | -1.69E-46 |
MS.gene055539 | MS.gene85203 | 0.838409 | 2.93E-57 | -1.69E-46 |
MS.gene055605 | MS.gene85203 | 0.838669 | 2.51E-57 | -1.69E-46 |
MS.gene055748 | MS.gene85203 | 0.807317 | 5.36E-50 | -1.69E-46 |
MS.gene056633 | MS.gene85203 | 0.821961 | 3.06E-53 | -1.69E-46 |
MS.gene056664 | MS.gene85203 | 0.821762 | 3.40E-53 | -1.69E-46 |
MS.gene056796 | MS.gene85203 | 0.802984 | 4.33E-49 | -1.69E-46 |
MS.gene056903 | MS.gene85203 | 0.821002 | 5.09E-53 | -1.69E-46 |
MS.gene057032 | MS.gene85203 | 0.829981 | 3.80E-55 | -1.69E-46 |
MS.gene057332 | MS.gene85203 | 0.852003 | 6.14E-61 | -1.69E-46 |
MS.gene057658 | MS.gene85203 | 0.811694 | 6.16E-51 | -1.69E-46 |
MS.gene057831 | MS.gene85203 | 0.804892 | 1.74E-49 | -1.69E-46 |
MS.gene058276 | MS.gene85203 | 0.819409 | 1.18E-52 | -1.69E-46 |
MS.gene05837 | MS.gene85203 | 0.805424 | 1.34E-49 | -1.69E-46 |
MS.gene058700 | MS.gene85203 | 0.801596 | 8.36E-49 | -1.69E-46 |
MS.gene058746 | MS.gene85203 | 0.820996 | 5.10E-53 | -1.69E-46 |
MS.gene058838 | MS.gene85203 | 0.818081 | 2.36E-52 | -1.69E-46 |
MS.gene059023 | MS.gene85203 | 0.824624 | 7.30E-54 | -1.69E-46 |
MS.gene05914 | MS.gene85203 | 0.814892 | 1.22E-51 | -1.69E-46 |
MS.gene05934 | MS.gene85203 | 0.817975 | 2.50E-52 | -1.69E-46 |
MS.gene059960 | MS.gene85203 | 0.810705 | 1.01E-50 | -1.69E-46 |
MS.gene060407 | MS.gene85203 | 0.813668 | 2.28E-51 | -1.69E-46 |
MS.gene06092 | MS.gene85203 | 0.831248 | 1.86E-55 | -1.69E-46 |
MS.gene061150 | MS.gene85203 | 0.805946 | 1.04E-49 | -1.69E-46 |
MS.gene061231 | MS.gene85203 | 0.841554 | 4.43E-58 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene85203.t1 | MTR_2g100220 | 81.496 | 254 | 20 | 2 | 1 | 227 | 1 | 254 | 7.43e-146 | 407 |
MS.gene85203.t1 | MTR_2g100220 | 81.048 | 248 | 20 | 2 | 1 | 221 | 1 | 248 | 2.08e-141 | 397 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene85203.t1 | AT3G13740 | 60.465 | 215 | 66 | 1 | 23 | 218 | 10 | 224 | 7.89e-83 | 247 |
MS.gene85203.t1 | AT1G55140 | 56.621 | 219 | 73 | 1 | 22 | 218 | 10 | 228 | 1.06e-82 | 246 |
MS.gene85203.t1 | AT3G13740 | 60.465 | 215 | 66 | 1 | 23 | 218 | 10 | 224 | 6.87e-82 | 245 |
MS.gene85203.t1 | AT3G13740 | 71.812 | 149 | 42 | 0 | 70 | 218 | 1 | 149 | 9.52e-72 | 216 |
MS.gene85203.t1 | AT3G13740 | 60.109 | 183 | 54 | 1 | 23 | 186 | 10 | 192 | 7.56e-68 | 207 |
MS.gene85203.t1 | AT3G13740 | 55.063 | 158 | 52 | 1 | 23 | 161 | 10 | 167 | 1.28e-52 | 168 |
MS.gene85203.t1 | AT1G55140 | 52.201 | 159 | 54 | 1 | 22 | 158 | 10 | 168 | 4.05e-50 | 161 |
MS.gene85203.t1 | AT3G13740 | 54.930 | 142 | 45 | 1 | 23 | 145 | 10 | 151 | 6.64e-45 | 147 |
Find 38 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGAACACGATGAAACCTATT+TGG | 0.206219 | 2.4:+4143532 | MS.gene85203:CDS |
CTCGTCAATGCCTTTGAATT+TGG | 0.238218 | 2.4:+4146935 | MS.gene85203:CDS |
CTAGGAGCGTTGCGGTTATA+AGG | 0.245759 | 2.4:-4143374 | None:intergenic |
GGTGAAGAAGATTGTGGTTT+TGG | 0.295830 | 2.4:-4143413 | None:intergenic |
GCTGCTACCTTAGCTTATAT+TGG | 0.304372 | 2.4:+4143614 | MS.gene85203:CDS |
GAACGAGGTTTAACGACTTT+AGG | 0.348737 | 2.4:-4143581 | None:intergenic |
CCTATTTGGGATATGATAGA+TGG | 0.357513 | 2.4:+4143546 | MS.gene85203:CDS |
CAAGCAAAACTAAGACAAAA+AGG | 0.357900 | 2.4:+4146366 | MS.gene85203:CDS |
TATTGGTGATTGCATTTATG+AGG | 0.357917 | 2.4:+4143631 | MS.gene85203:CDS |
CCATCTATCATATCCCAAAT+AGG | 0.385713 | 2.4:-4143546 | None:intergenic |
GTTTATCTTCTTCATTATCA+TGG | 0.401690 | 2.4:+4143282 | MS.gene85203:CDS |
TAGGAGCGTTGCGGTTATAA+GGG | 0.424850 | 2.4:-4143373 | None:intergenic |
AACCAGTAGTAAAAGCTTCA+TGG | 0.429937 | 2.4:+4143333 | MS.gene85203:CDS |
GTCAATGCCTTTGAATTTGG+AGG | 0.436135 | 2.4:+4146938 | MS.gene85203:CDS |
TTTCAATTTGGATGAAGAAA+AGG | 0.442453 | 2.4:-4143312 | None:intergenic |
GAACACGATGAAACCTATTT+GGG | 0.451212 | 2.4:+4143533 | MS.gene85203:CDS |
GATGAGCTGAACAGTGGATA+AGG | 0.458530 | 2.4:+4147464 | MS.gene85203:CDS |
TTTGACAAATGTGAATCGCT+TGG | 0.467151 | 2.4:+4146878 | MS.gene85203:CDS |
TCCTTACGGGTAGAAGGTGC+TGG | 0.475784 | 2.4:-4143434 | None:intergenic |
ATTGTATTCTTCAATACTCA+AGG | 0.493781 | 2.4:-4144740 | None:intergenic |
TTTCAGGGATGTTCTTCGAT+GGG | 0.502029 | 2.4:+4146328 | MS.gene85203:intron |
ATTTCAGGGATGTTCTTCGA+TGG | 0.515754 | 2.4:+4146327 | MS.gene85203:intron |
ACCAGTAGTAAAAGCTTCAT+GGG | 0.516338 | 2.4:+4143334 | MS.gene85203:CDS |
ATTAATTCCTCCAAATTCAA+AGG | 0.528573 | 2.4:-4146945 | None:intergenic |
TTAACGACTTTAGGTGGAGT+TGG | 0.531286 | 2.4:-4143572 | None:intergenic |
GCAATCACCAATATAAGCTA+AGG | 0.541049 | 2.4:-4143621 | None:intergenic |
CGAGGTTTAACGACTTTAGG+TGG | 0.556732 | 2.4:-4143578 | None:intergenic |
AAATTCATCATCATCATGCA+AGG | 0.583234 | 2.4:+4143260 | None:intergenic |
TTCAGGGATGTTCTTCGATG+GGG | 0.583400 | 2.4:+4146329 | MS.gene85203:intron |
ATTTCTTATCAGATCAAGAG+AGG | 0.597984 | 2.4:+4145632 | MS.gene85203:CDS |
TATTCTTCAATACTCAAGGG+TGG | 0.605648 | 2.4:-4144736 | None:intergenic |
TTGTATTCTTCAATACTCAA+GGG | 0.608670 | 2.4:-4144739 | None:intergenic |
ACATGCAGCTATATGCTCGT+AGG | 0.628628 | 2.4:+4144701 | MS.gene85203:intron |
GGTGCTGGTGAAGAAGATTG+TGG | 0.630028 | 2.4:-4143419 | None:intergenic |
AGCGAACAACTGCCATCACA+CGG | 0.636186 | 2.4:-4144765 | None:intergenic |
TAGACAGATGAGCTGAACAG+TGG | 0.652117 | 2.4:+4147458 | MS.gene85203:intron |
AGAATACAATGACCGTGTGA+TGG | 0.681673 | 2.4:+4144753 | MS.gene85203:CDS |
GATGGCAGTTGTTCGCTGTG+AGG | 0.703384 | 2.4:+4144771 | MS.gene85203:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AGATAGTATTAAAATTAATA+AGG | + | chr2.4:4144139-4144158 | MS.gene85203:intron | 10.0% |
!!! | AAAAGTTATTTTATTATGAT+TGG | + | chr2.4:4145095-4145114 | MS.gene85203:intron | 10.0% |
!!! | AAAGTTATTTTATTATGATT+GGG | + | chr2.4:4145096-4145115 | MS.gene85203:intron | 10.0% |
!! | AAAGTTATACAAATTAGATA+TGG | - | chr2.4:4145042-4145061 | None:intergenic | 15.0% |
!! | AAGTTATACAAATTAGATAT+GGG | - | chr2.4:4145041-4145060 | None:intergenic | 15.0% |
!! | AGAAAATATTGTTATCAAAT+AGG | + | chr2.4:4144498-4144517 | MS.gene85203:intron | 15.0% |
!! | ATTAGAGAATAATAAATACT+AGG | - | chr2.4:4143676-4143695 | None:intergenic | 15.0% |
!! | ATTTAAATTGAAAACAAAGT+AGG | - | chr2.4:4144819-4144838 | None:intergenic | 15.0% |
!! | TTAAAAAAGTTAGATAAGTA+AGG | + | chr2.4:4144909-4144928 | MS.gene85203:intron | 15.0% |
!! | TTTAAATTGAAAACAAAGTA+GGG | - | chr2.4:4144818-4144837 | None:intergenic | 15.0% |
!! | TTTCAATTTAAATTTACATG+CGG | + | chr2.4:4144826-4144845 | MS.gene85203:intron | 15.0% |
!!! | ACATTTCTTTAATTTTAAAG+TGG | + | chr2.4:4146507-4146526 | MS.gene85203:intron | 15.0% |
!!! | TCTAATTTGTATAACTTTAT+AGG | + | chr2.4:4145044-4145063 | MS.gene85203:intron | 15.0% |
!!! | TTTTGATGAATTTTATTTCA+GGG | + | chr2.4:4146313-4146332 | MS.gene85203:intron | 15.0% |
!! | AAGATTTACATTTATATCAC+TGG | - | chr2.4:4146469-4146488 | None:intergenic | 20.0% |
!! | AATAACAAATAAAATCCAAC+AGG | - | chr2.4:4145511-4145530 | None:intergenic | 20.0% |
!! | AATCAAAATCGTAATACAAT+TGG | - | chr2.4:4144333-4144352 | None:intergenic | 20.0% |
!! | AATGAAATAAGAAATACAAC+TGG | + | chr2.4:4147107-4147126 | MS.gene85203:intron | 20.0% |
!! | AATGACATAAAATAAAGTAG+AGG | + | chr2.4:4143866-4143885 | MS.gene85203:intron | 20.0% |
!! | AGAAGAAACTTCATTAAATA+TGG | - | chr2.4:4145717-4145736 | None:intergenic | 20.0% |
!! | ATAGTTTCAAATAAAAAGCA+CGG | - | chr2.4:4146069-4146088 | None:intergenic | 20.0% |
!! | CAAAAGGAATGTATATTAAA+TGG | - | chr2.4:4146734-4146753 | None:intergenic | 20.0% |
!! | CTTCATTAAATATGGAAAAT+AGG | - | chr2.4:4145709-4145728 | None:intergenic | 20.0% |
!! | GAAAAACTAATGTTAGAATT+GGG | + | chr2.4:4146900-4146919 | MS.gene85203:CDS | 20.0% |
!!! | AATGACTTATGCTTTAAATA+GGG | + | chr2.4:4145166-4145185 | MS.gene85203:intron | 20.0% |
!!! | ATTTCATTTTCTGTTATTTC+TGG | - | chr2.4:4147095-4147114 | None:intergenic | 20.0% |
!!! | CTTTTGATGAATTTTATTTC+AGG | + | chr2.4:4146312-4146331 | MS.gene85203:intron | 20.0% |
!!! | GAAATTTTTGTTATCTACAT+AGG | + | chr2.4:4147139-4147158 | MS.gene85203:intron | 20.0% |
!!! | TAATGACTTATGCTTTAAAT+AGG | + | chr2.4:4145165-4145184 | MS.gene85203:intron | 20.0% |
!!! | TATATATTTTCCAAACTTTG+TGG | + | chr2.4:4144214-4144233 | MS.gene85203:intron | 20.0% |
!!! | TCCTATTTGTTATTTTCAAT+TGG | + | chr2.4:4144061-4144080 | MS.gene85203:intron | 20.0% |
!!! | TTTCATTTTCTGTTATTTCT+GGG | - | chr2.4:4147094-4147113 | None:intergenic | 20.0% |
!!! | TTTTTTCAACAACATATCAA+GGG | + | chr2.4:4144402-4144421 | MS.gene85203:intron | 20.0% |
!!! | TTTTTTTCAACAACATATCA+AGG | + | chr2.4:4144401-4144420 | MS.gene85203:intron | 20.0% |
! | AAAAAAAGCAAACATACTTC+TGG | + | chr2.4:4146166-4146185 | MS.gene85203:intron | 25.0% |
! | AAATAACAAATAGGATGCAA+AGG | - | chr2.4:4144056-4144075 | None:intergenic | 25.0% |
! | AAATAAGAAGATCTTTGAGT+TGG | + | chr2.4:4144100-4144119 | MS.gene85203:intron | 25.0% |
! | AAGTTTACAAAGAAGAGAAA+TGG | - | chr2.4:4145283-4145302 | None:intergenic | 25.0% |
! | AATAACAAATAGGATGCAAA+GGG | - | chr2.4:4144055-4144074 | None:intergenic | 25.0% |
! | AATATCAGTTAAGAAACAGA+AGG | - | chr2.4:4145436-4145455 | None:intergenic | 25.0% |
! | ACACTATTTAATATCACAAG+AGG | - | chr2.4:4147168-4147187 | None:intergenic | 25.0% |
! | ACATAAAATAAAGTAGAGGA+AGG | + | chr2.4:4143870-4143889 | MS.gene85203:intron | 25.0% |
! | AGTTTACAAAGAAGAGAAAT+GGG | - | chr2.4:4145282-4145301 | None:intergenic | 25.0% |
! | ATATCAAGGGAAAAATTGAT+AGG | + | chr2.4:4144415-4144434 | MS.gene85203:intron | 25.0% |
! | ATATCAGTTAAGAAACAGAA+GGG | - | chr2.4:4145435-4145454 | None:intergenic | 25.0% |
! | ATATGAAGATTTATCCTTGT+TGG | + | chr2.4:4145775-4145794 | MS.gene85203:intron | 25.0% |
! | ATCATGAGATAAACTCTATA+GGG | - | chr2.4:4145843-4145862 | None:intergenic | 25.0% |
! | ATTAACAAAACTTCCTTAGA+TGG | + | chr2.4:4147372-4147391 | MS.gene85203:intron | 25.0% |
! | ATTAATTCCTCCAAATTCAA+AGG | - | chr2.4:4146948-4146967 | None:intergenic | 25.0% |
! | ATTATTCCTATCAAACTATC+TGG | - | chr2.4:4146767-4146786 | None:intergenic | 25.0% |
! | ATTGTATTCTTCAATACTCA+AGG | - | chr2.4:4144743-4144762 | None:intergenic | 25.0% |
! | CATAAATCATGATTTACTTC+TGG | - | chr2.4:4145140-4145159 | None:intergenic | 25.0% |
! | CATGTAATGTAATACAAGTT+GGG | - | chr2.4:4147230-4147249 | None:intergenic | 25.0% |
! | GAAATTGCAAAATAATCATG+TGG | - | chr2.4:4146686-4146705 | None:intergenic | 25.0% |
! | GATACACATTGTAATTAGAT+TGG | - | chr2.4:4145559-4145578 | None:intergenic | 25.0% |
! | GCCAATTGAAAATAACAAAT+AGG | - | chr2.4:4144065-4144084 | None:intergenic | 25.0% |
! | GGAAAAACTAATGTTAGAAT+TGG | + | chr2.4:4146899-4146918 | MS.gene85203:CDS | 25.0% |
! | GGACTATTACTTTAAATTGT+AGG | + | chr2.4:4144180-4144199 | MS.gene85203:intron | 25.0% |
! | GTTTATCTTCTTCATTATCA+TGG | + | chr2.4:4143282-4143301 | MS.gene85203:CDS | 25.0% |
! | TAATTATTCGTACCAAACAA+AGG | + | chr2.4:4143692-4143711 | MS.gene85203:intron | 25.0% |
! | TAGAGTTGAAGTATAAGATT+TGG | + | chr2.4:4144584-4144603 | MS.gene85203:intron | 25.0% |
! | TATGAAGATTTATCCTTGTT+GGG | + | chr2.4:4145776-4145795 | MS.gene85203:intron | 25.0% |
! | TCTTAATTTCTATGACGATT+GGG | + | chr2.4:4143966-4143985 | MS.gene85203:intron | 25.0% |
! | TGTGATATTAAATAGTGTTC+TGG | + | chr2.4:4147170-4147189 | MS.gene85203:intron | 25.0% |
! | TTGTATTACATTACATGGTA+GGG | + | chr2.4:4147233-4147252 | MS.gene85203:intron | 25.0% |
! | TTGTATTCTTCAATACTCAA+GGG | - | chr2.4:4144742-4144761 | None:intergenic | 25.0% |
! | TTTCAATTTGGATGAAGAAA+AGG | - | chr2.4:4143315-4143334 | None:intergenic | 25.0% |
!! | AACACTTTTCAGATCATAAA+AGG | - | chr2.4:4146806-4146825 | None:intergenic | 25.0% |
!! | ATGACTTATGCTTTAAATAG+GGG | + | chr2.4:4145167-4145186 | MS.gene85203:intron | 25.0% |
!!! | ACAAATTTTTGAGCTTATAG+CGG | - | chr2.4:4144555-4144574 | None:intergenic | 25.0% |
!!! | ATCTGGTTTTCAATTACAAA+AGG | - | chr2.4:4146750-4146769 | None:intergenic | 25.0% |
!!! | CTGTTTCTTAACTGATATTT+TGG | + | chr2.4:4145437-4145456 | MS.gene85203:intron | 25.0% |
!!! | GTTAGAATATGTTACTTTCA+GGG | + | chr2.4:4145654-4145673 | MS.gene85203:intron | 25.0% |
!!! | TTTTACTACTGGTTTCAATT+TGG | - | chr2.4:4143327-4143346 | None:intergenic | 25.0% |
AAAACTTCCTTAGATGGAAT+GGG | + | chr2.4:4147378-4147397 | MS.gene85203:intron | 30.0% | |
AACTTCCTAAATCCCAATTA+GGG | - | chr2.4:4145009-4145028 | None:intergenic | 30.0% | |
AAGGAAAACAAAGCTAAATG+TGG | + | chr2.4:4144158-4144177 | MS.gene85203:intron | 30.0% | |
AGGAAAACAAAGCTAAATGT+GGG | + | chr2.4:4144159-4144178 | MS.gene85203:intron | 30.0% | |
ATCCTGCAAACAAACAAAAA+AGG | - | chr2.4:4145584-4145603 | None:intergenic | 30.0% | |
ATTCTAGTGCTAGTTCAATA+GGG | + | chr2.4:4146216-4146235 | MS.gene85203:intron | 30.0% | |
ATTTCTTATCAGATCAAGAG+AGG | + | chr2.4:4145632-4145651 | MS.gene85203:CDS | 30.0% | |
CAAGCAAAACTAAGACAAAA+AGG | + | chr2.4:4146366-4146385 | MS.gene85203:CDS | 30.0% | |
CCAACTTGTATTACATTACA+TGG | + | chr2.4:4147228-4147247 | MS.gene85203:intron | 30.0% | |
CCATGTAATGTAATACAAGT+TGG | - | chr2.4:4147231-4147250 | None:intergenic | 30.0% | |
CTTACGAATTCAAAATCTTC+TGG | - | chr2.4:4143798-4143817 | None:intergenic | 30.0% | |
CTTGTATTACATTACATGGT+AGG | + | chr2.4:4147232-4147251 | MS.gene85203:intron | 30.0% | |
GATCATGAGATAAACTCTAT+AGG | - | chr2.4:4145844-4145863 | None:intergenic | 30.0% | |
GATCGAAACTTACTCTAATA+CGG | + | chr2.4:4147050-4147069 | MS.gene85203:intron | 30.0% | |
GTCTTAATTTCTATGACGAT+TGG | + | chr2.4:4143965-4143984 | MS.gene85203:intron | 30.0% | |
TAAATTTACATGCGGAAAGA+CGG | + | chr2.4:4144834-4144853 | MS.gene85203:intron | 30.0% | |
TAACTTCCTAAATCCCAATT+AGG | - | chr2.4:4145010-4145029 | None:intergenic | 30.0% | |
TAGTAAGTTCCTTCAAACTT+CGG | + | chr2.4:4146435-4146454 | MS.gene85203:intron | 30.0% | |
TATTCTAGTGCTAGTTCAAT+AGG | + | chr2.4:4146215-4146234 | MS.gene85203:intron | 30.0% | |
TGAAAACCAGATAGTTTGAT+AGG | + | chr2.4:4146758-4146777 | MS.gene85203:intron | 30.0% | |
TGCTTATTGAATTTCTCTTG+TGG | - | chr2.4:4145212-4145231 | None:intergenic | 30.0% | |
TTCTCTTCTTTGTAAACTTC+AGG | + | chr2.4:4145284-4145303 | MS.gene85203:intron | 30.0% | |
! | CAGAAGATTTTGAATTCGTA+AGG | + | chr2.4:4143796-4143815 | MS.gene85203:intron | 30.0% |
! | CGGAAATGTAATTTTCCTTA+CGG | - | chr2.4:4143451-4143470 | None:intergenic | 30.0% |
! | GCTTTTGCAAATACAAACTT+AGG | - | chr2.4:4145317-4145336 | None:intergenic | 30.0% |
! | GGAAATGTAATTTTCCTTAC+GGG | - | chr2.4:4143450-4143469 | None:intergenic | 30.0% |
! | TATTGGTGATTGCATTTATG+AGG | + | chr2.4:4143631-4143650 | MS.gene85203:CDS | 30.0% |
! | TCTTCAATTTTGCCTATAGT+GGG | - | chr2.4:4143500-4143519 | None:intergenic | 30.0% |
! | TTCTTCAATTTTGCCTATAG+TGG | - | chr2.4:4143501-4143520 | None:intergenic | 30.0% |
!! | ATGTTCTGAAATCTGTGTTA+AGG | + | chr2.4:4145962-4145981 | MS.gene85203:intron | 30.0% |
!! | GGTTAGAATATGTTACTTTC+AGG | + | chr2.4:4145653-4145672 | MS.gene85203:intron | 30.0% |
!!! | CTTAACTGATATTTTGGTCA+AGG | + | chr2.4:4145443-4145462 | MS.gene85203:intron | 30.0% |
AAACAAGAAGCAGCAGAAAA+TGG | - | chr2.4:4145408-4145427 | None:intergenic | 35.0% | |
AAATTTACATGCGGAAAGAC+GGG | + | chr2.4:4144835-4144854 | MS.gene85203:intron | 35.0% | |
AACCAGTAGTAAAAGCTTCA+TGG | + | chr2.4:4143333-4143352 | MS.gene85203:CDS | 35.0% | |
ACAAAATTGCAGTGAGCTAT+TGG | + | chr2.4:4143933-4143952 | MS.gene85203:intron | 35.0% | |
ACACTCAGCATGATAAAAGT+TGG | + | chr2.4:4146248-4146267 | MS.gene85203:intron | 35.0% | |
ACCAGTAGTAAAAGCTTCAT+GGG | + | chr2.4:4143334-4143353 | MS.gene85203:CDS | 35.0% | |
ACTATCTACGACAACAATTG+AGG | - | chr2.4:4144126-4144145 | None:intergenic | 35.0% | |
AGAACACGATGAAACCTATT+TGG | + | chr2.4:4143532-4143551 | MS.gene85203:CDS | 35.0% | |
AGATTTCAGAACATCACACT+AGG | - | chr2.4:4145956-4145975 | None:intergenic | 35.0% | |
CAAAACTTCCTTAGATGGAA+TGG | + | chr2.4:4147377-4147396 | MS.gene85203:intron | 35.0% | |
CAACCTAGTTCAATAGACAT+TGG | - | chr2.4:4146848-4146867 | None:intergenic | 35.0% | |
CAATGTCTATTGAACTAGGT+TGG | + | chr2.4:4146846-4146865 | MS.gene85203:intron | 35.0% | |
CCATCTATCATATCCCAAAT+AGG | - | chr2.4:4143549-4143568 | None:intergenic | 35.0% | |
CTCTAATACGGCTGAAAAAT+AGG | + | chr2.4:4147062-4147081 | MS.gene85203:intron | 35.0% | |
CTGTCTAGAAGTTGAAAGAA+AGG | - | chr2.4:4147445-4147464 | None:intergenic | 35.0% | |
GAAAACTCTACCACAAAGTT+TGG | - | chr2.4:4144227-4144246 | None:intergenic | 35.0% | |
GAACACGATGAAACCTATTT+GGG | + | chr2.4:4143533-4143552 | MS.gene85203:CDS | 35.0% | |
GCAATCACCAATATAAGCTA+AGG | - | chr2.4:4143624-4143643 | None:intergenic | 35.0% | |
GTAGATAAGTTAACCGATAG+TGG | + | chr2.4:4143767-4143786 | MS.gene85203:intron | 35.0% | |
TAGCAGAATTGTGGCATAAT+TGG | - | chr2.4:4146197-4146216 | None:intergenic | 35.0% | |
TATCTCATGATCCTGAAAAC+AGG | + | chr2.4:4145852-4145871 | MS.gene85203:intron | 35.0% | |
TATTCTTCAATACTCAAGGG+TGG | - | chr2.4:4144739-4144758 | None:intergenic | 35.0% | |
TGTAATTCCCATTCCATCTA+AGG | - | chr2.4:4147388-4147407 | None:intergenic | 35.0% | |
TTCTAGTGCTAGTTCAATAG+GGG | + | chr2.4:4146217-4146236 | MS.gene85203:intron | 35.0% | |
TTTGACAAATGTGAATCGCT+TGG | + | chr2.4:4146878-4146897 | MS.gene85203:CDS | 35.0% | |
! | ATGGAAAATAGGCGTGTTTT+GGG | - | chr2.4:4145698-4145717 | None:intergenic | 35.0% |
! | ATTTTCATCTGTCTCATGGT+TGG | + | chr2.4:4146099-4146118 | MS.gene85203:intron | 35.0% |
! | CAGCAGAAAATGGTGATTTT+GGG | - | chr2.4:4145398-4145417 | None:intergenic | 35.0% |
! | CCTATTTGGGATATGATAGA+TGG | + | chr2.4:4143546-4143565 | MS.gene85203:CDS | 35.0% |
! | GACTTTTGTGTAGAAATGTC+CGG | + | chr2.4:4146022-4146041 | MS.gene85203:intron | 35.0% |
! | TAATTTTCCTTACGGGTAGA+AGG | - | chr2.4:4143443-4143462 | None:intergenic | 35.0% |
! | TATGGAAAATAGGCGTGTTT+TGG | - | chr2.4:4145699-4145718 | None:intergenic | 35.0% |
! | TGAGATTTTCATCTGTCTCA+TGG | + | chr2.4:4146095-4146114 | MS.gene85203:intron | 35.0% |
!!! | AACTGATATTTTGGTCAAGG+AGG | + | chr2.4:4145446-4145465 | MS.gene85203:intron | 35.0% |
!!! | GTCCTTTTTTGTTTGTTTGC+AGG | + | chr2.4:4145579-4145598 | MS.gene85203:intron | 35.0% |
!!! | TTTCTTATTTTCGCCCAACA+AGG | - | chr2.4:4145792-4145811 | None:intergenic | 35.0% |
ACCAAACAAAGGTTCTGTTG+CGG | + | chr2.4:4143703-4143722 | MS.gene85203:intron | 40.0% | |
ACGCCAATGTCTATTGAACT+AGG | + | chr2.4:4146842-4146861 | MS.gene85203:intron | 40.0% | |
AGAACATCACACTAGGTTTC+AGG | - | chr2.4:4145949-4145968 | None:intergenic | 40.0% | |
AGAATACAATGACCGTGTGA+TGG | + | chr2.4:4144753-4144772 | MS.gene85203:CDS | 40.0% | |
AGACATTGGCGTTAGAAAAC+AGG | - | chr2.4:4146834-4146853 | None:intergenic | 40.0% | |
AGACTCATGTCACCCTAATT+GGG | + | chr2.4:4144994-4145013 | MS.gene85203:intron | 40.0% | |
AGGGGAAAAAGACATCATTC+AGG | + | chr2.4:4145185-4145204 | MS.gene85203:intron | 40.0% | |
AGTTTCGATCAAAGTTCGAC+TGG | - | chr2.4:4147040-4147059 | None:intergenic | 40.0% | |
ATTTCAGGGATGTTCTTCGA+TGG | + | chr2.4:4146327-4146346 | MS.gene85203:intron | 40.0% | |
CATGATCCTGAAAACAGGAT+TGG | + | chr2.4:4145857-4145876 | MS.gene85203:intron | 40.0% | |
CTCGTCAATGCCTTTGAATT+TGG | + | chr2.4:4146935-4146954 | MS.gene85203:CDS | 40.0% | |
GAAATACAACTGGAGTGTGT+CGG | + | chr2.4:4147117-4147136 | MS.gene85203:intron | 40.0% | |
GAACGAGGTTTAACGACTTT+AGG | - | chr2.4:4143584-4143603 | None:intergenic | 40.0% | |
GAATACTCAGTAGTCAGTTC+TGG | + | chr2.4:4147325-4147344 | MS.gene85203:intron | 40.0% | |
GATGAGAAACCGAAGTTTGA+AGG | - | chr2.4:4146447-4146466 | None:intergenic | 40.0% | |
GCACTAGAATAGCAGAATTG+TGG | - | chr2.4:4146206-4146225 | None:intergenic | 40.0% | |
GCAGCATTAAAAACAGAACG+AGG | - | chr2.4:4143599-4143618 | None:intergenic | 40.0% | |
GCTGCTACCTTAGCTTATAT+TGG | + | chr2.4:4143614-4143633 | MS.gene85203:CDS | 40.0% | |
GGGGAAAAAGACATCATTCA+GGG | + | chr2.4:4145186-4145205 | MS.gene85203:intron | 40.0% | |
GTCAATGCCTTTGAATTTGG+AGG | + | chr2.4:4146938-4146957 | MS.gene85203:CDS | 40.0% | |
GTTGCACAGTTAGCCATTAA+CGG | + | chr2.4:4146653-4146672 | MS.gene85203:intron | 40.0% | |
GTTTCGATCAAAGTTCGACT+GGG | - | chr2.4:4147039-4147058 | None:intergenic | 40.0% | |
TAGACGAAACCAATAAGCAG+CGG | + | chr2.4:4146136-4146155 | MS.gene85203:intron | 40.0% | |
TAGTTTCTCTCACCTTGGTT+GGG | + | chr2.4:4144264-4144283 | MS.gene85203:intron | 40.0% | |
TGTCACCCTAATTGGGATTT+AGG | + | chr2.4:4145001-4145020 | MS.gene85203:intron | 40.0% | |
TTAACGACTTTAGGTGGAGT+TGG | - | chr2.4:4143575-4143594 | None:intergenic | 40.0% | |
TTACATTACATGGTAGGGCA+AGG | + | chr2.4:4147238-4147257 | MS.gene85203:intron | 40.0% | |
TTCAAAACTCCGCTGCTTAT+TGG | - | chr2.4:4146148-4146167 | None:intergenic | 40.0% | |
TTTCAGGGATGTTCTTCGAT+GGG | + | chr2.4:4146328-4146347 | MS.gene85203:intron | 40.0% | |
! | AATGTGAGTTTGACTTCAGC+CGG | + | chr2.4:4145475-4145494 | MS.gene85203:intron | 40.0% |
! | AGAACACCAATCCTGTTTTC+AGG | - | chr2.4:4145866-4145885 | None:intergenic | 40.0% |
! | GCAGCAGAAAATGGTGATTT+TGG | - | chr2.4:4145399-4145418 | None:intergenic | 40.0% |
! | GGTGAAGAAGATTGTGGTTT+TGG | - | chr2.4:4143416-4143435 | None:intergenic | 40.0% |
! | TCCCATGAAGCTTTTACTAC+TGG | - | chr2.4:4143338-4143357 | None:intergenic | 40.0% |
! | TGGAAAATAGGCGTGTTTTG+GGG | - | chr2.4:4145697-4145716 | None:intergenic | 40.0% |
!! | ATTTTGCCTATAGTGGGAAG+TGG | - | chr2.4:4143494-4143513 | None:intergenic | 40.0% |
!! | GGTGTTCTGAAATCTGTGTT+GGG | + | chr2.4:4145878-4145897 | MS.gene85203:intron | 40.0% |
!! | GTGTTCTGAAATCTGTGTTG+GGG | + | chr2.4:4145879-4145898 | MS.gene85203:intron | 40.0% |
!! | TCTTCTGGCTTATCCACTAT+CGG | - | chr2.4:4143783-4143802 | None:intergenic | 40.0% |
!! | TGGTGTTCTGAAATCTGTGT+TGG | + | chr2.4:4145877-4145896 | MS.gene85203:intron | 40.0% |
!! | TTGTTACTCTCTGAGACTTC+AGG | + | chr2.4:4144014-4144033 | MS.gene85203:intron | 40.0% |
!!! | GAAGAAGATTGTGGTTTTGG+TGG | - | chr2.4:4143413-4143432 | None:intergenic | 40.0% |
ACATGCAGCTATATGCTCGT+AGG | + | chr2.4:4144701-4144720 | MS.gene85203:intron | 45.0% | |
AGGGTGACATGAGTCTGAAA+TGG | - | chr2.4:4144990-4145009 | None:intergenic | 45.0% | |
AGTAGAGGAAGGAACCCTAT+TGG | + | chr2.4:4143881-4143900 | MS.gene85203:intron | 45.0% | |
AGTGTTCTGGTAGTACAAGC+TGG | + | chr2.4:4147183-4147202 | MS.gene85203:intron | 45.0% | |
AGTTTCTCTCACCTTGGTTG+GGG | + | chr2.4:4144265-4144284 | MS.gene85203:intron | 45.0% | |
ATATGTTTCCACCCCAACCA+AGG | - | chr2.4:4144279-4144298 | None:intergenic | 45.0% | |
ATTACATGGTAGGGCAAGGA+GGG | + | chr2.4:4147242-4147261 | MS.gene85203:intron | 45.0% | |
CAATAGAAAGCTGCAGTGCT+GGG | - | chr2.4:4146992-4147011 | None:intergenic | 45.0% | |
CAGACTCATGTCACCCTAAT+TGG | + | chr2.4:4144993-4145012 | MS.gene85203:intron | 45.0% | |
CCAAGGTGAGAGAAACTACA+CGG | - | chr2.4:4144262-4144281 | None:intergenic | 45.0% | |
CGAGGTTTAACGACTTTAGG+TGG | - | chr2.4:4143581-4143600 | None:intergenic | 45.0% | |
GCGACTTAAACTACCAGTTC+CGG | - | chr2.4:4146044-4146063 | None:intergenic | 45.0% | |
GGTTGGGGTGGAAACATATA+TGG | + | chr2.4:4144280-4144299 | MS.gene85203:intron | 45.0% | |
GTAGTTTCTCTCACCTTGGT+TGG | + | chr2.4:4144263-4144282 | MS.gene85203:intron | 45.0% | |
GTCTGGATGTACTGCCAATA+GGG | - | chr2.4:4143898-4143917 | None:intergenic | 45.0% | |
GTGCATGCTGCAAAAATGTC+TGG | - | chr2.4:4143915-4143934 | None:intergenic | 45.0% | |
GTGTTCTGGTAGTACAAGCT+GGG | + | chr2.4:4147184-4147203 | MS.gene85203:intron | 45.0% | |
TAGACAGATGAGCTGAACAG+TGG | + | chr2.4:4147458-4147477 | MS.gene85203:intron | 45.0% | |
TATAGGGAGCAGTTCAAGAG+AGG | - | chr2.4:4145827-4145846 | None:intergenic | 45.0% | |
TCAATAGAAAGCTGCAGTGC+TGG | - | chr2.4:4146993-4147012 | None:intergenic | 45.0% | |
TCCAACAGGAAATCACTAGC+CGG | - | chr2.4:4145497-4145516 | None:intergenic | 45.0% | |
TCCGCAACAGAACCTTTGTT+TGG | - | chr2.4:4143707-4143726 | None:intergenic | 45.0% | |
TGTCTGGATGTACTGCCAAT+AGG | - | chr2.4:4143899-4143918 | None:intergenic | 45.0% | |
TGTGTAGAAATGTCCGGAAC+TGG | + | chr2.4:4146028-4146047 | MS.gene85203:intron | 45.0% | |
TTCAGGGATGTTCTTCGATG+GGG | + | chr2.4:4146329-4146348 | MS.gene85203:intron | 45.0% | |
! | ACTAAGACAAAAAGGCGTGC+TGG | + | chr2.4:4146374-4146393 | MS.gene85203:CDS | 45.0% |
! | GGGTGACATGAGTCTGAAAT+GGG | - | chr2.4:4144989-4145008 | None:intergenic | 45.0% |
! | GGTGGTTGAGTGAGTTTTCT+AGG | - | chr2.4:4143395-4143414 | None:intergenic | 45.0% |
!! | ACAAGTTGGGAGTATCTGTC+TGG | - | chr2.4:4147217-4147236 | None:intergenic | 45.0% |
!! | GGAAAATAGGCGTGTTTTGG+GGG | - | chr2.4:4145696-4145715 | None:intergenic | 45.0% |
!! | TAGGAGCGTTGCGGTTATAA+GGG | - | chr2.4:4143376-4143395 | None:intergenic | 45.0% |
!!! | TGAGTTTTCTAGGAGCGTTG+CGG | - | chr2.4:4143385-4143404 | None:intergenic | 45.0% |
!!! | TGTCGCTTTTCGTGTGTTTG+AGG | - | chr2.4:4144447-4144466 | None:intergenic | 45.0% |
AGCGAACAACTGCCATCACA+CGG | - | chr2.4:4144768-4144787 | None:intergenic | 50.0% | |
AGTGGCGCGTTTGAGAAGAT+CGG | - | chr2.4:4143471-4143490 | None:intergenic | 50.0% | |
CACAGTTAGCCATTAACGGC+TGG | + | chr2.4:4146657-4146676 | MS.gene85203:intron | 50.0% | |
CATTACATGGTAGGGCAAGG+AGG | + | chr2.4:4147241-4147260 | MS.gene85203:intron | 50.0% | |
CCGTGTAGTTTCTCTCACCT+TGG | + | chr2.4:4144259-4144278 | MS.gene85203:intron | 50.0% | |
!! | CTAGGAGCGTTGCGGTTATA+AGG | - | chr2.4:4143377-4143396 | None:intergenic | 50.0% |
!! | GGTGCTGGTGAAGAAGATTG+TGG | - | chr2.4:4143422-4143441 | None:intergenic | 50.0% |
!!! | AAATAGGCGTGTTTTGGGGG+AGG | - | chr2.4:4145693-4145712 | None:intergenic | 50.0% |
ACCAGCACCTTCTACCCGTA+AGG | + | chr2.4:4143433-4143452 | MS.gene85203:intron | 55.0% | |
ATGTGGCAGCCAGCCGTTAA+TGG | - | chr2.4:4146669-4146688 | None:intergenic | 55.0% | |
GATGGCAGTTGTTCGCTGTG+AGG | + | chr2.4:4144771-4144790 | MS.gene85203:CDS | 55.0% | |
GCCACTCCACTTCCCACTAT+AGG | + | chr2.4:4143485-4143504 | MS.gene85203:intron | 55.0% | |
GCCGGCTAGTGATTTCCTGT+TGG | + | chr2.4:4145493-4145512 | MS.gene85203:intron | 55.0% | |
TTCTCTCACCTTGGTTGGGG+TGG | + | chr2.4:4144268-4144287 | MS.gene85203:intron | 55.0% | |
! | GCCTATAGTGGGAAGTGGAG+TGG | - | chr2.4:4143489-4143508 | None:intergenic | 55.0% |
! | TCCTTACGGGTAGAAGGTGC+TGG | - | chr2.4:4143437-4143456 | None:intergenic | 55.0% |
! | AGAAAGCTGCAGTGCTGGGC+TGG | - | chr2.4:4146988-4147007 | None:intergenic | 60.0% |
!!! | AGGCGTGTTTTGGGGGAGGA+GGG | - | chr2.4:4145689-4145708 | None:intergenic | 60.0% |
!!! | TAGGCGTGTTTTGGGGGAGG+AGG | - | chr2.4:4145690-4145709 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 4143275 | 4147484 | 4143275 | ID=MS.gene85203 |
chr2.4 | mRNA | 4143275 | 4147484 | 4143275 | ID=MS.gene85203.t1;Parent=MS.gene85203 |
chr2.4 | exon | 4143275 | 4143449 | 4143275 | ID=MS.gene85203.t1.exon1;Parent=MS.gene85203.t1 |
chr2.4 | CDS | 4143275 | 4143449 | 4143275 | ID=cds.MS.gene85203.t1;Parent=MS.gene85203.t1 |
chr2.4 | exon | 4143519 | 4143652 | 4143519 | ID=MS.gene85203.t1.exon2;Parent=MS.gene85203.t1 |
chr2.4 | CDS | 4143519 | 4143652 | 4143519 | ID=cds.MS.gene85203.t1;Parent=MS.gene85203.t1 |
chr2.4 | exon | 4144709 | 4144798 | 4144709 | ID=MS.gene85203.t1.exon3;Parent=MS.gene85203.t1 |
chr2.4 | CDS | 4144709 | 4144798 | 4144709 | ID=cds.MS.gene85203.t1;Parent=MS.gene85203.t1 |
chr2.4 | exon | 4145601 | 4145653 | 4145601 | ID=MS.gene85203.t1.exon4;Parent=MS.gene85203.t1 |
chr2.4 | CDS | 4145601 | 4145653 | 4145601 | ID=cds.MS.gene85203.t1;Parent=MS.gene85203.t1 |
chr2.4 | exon | 4146334 | 4146436 | 4146334 | ID=MS.gene85203.t1.exon5;Parent=MS.gene85203.t1 |
chr2.4 | CDS | 4146334 | 4146436 | 4146334 | ID=cds.MS.gene85203.t1;Parent=MS.gene85203.t1 |
chr2.4 | exon | 4146864 | 4146968 | 4146864 | ID=MS.gene85203.t1.exon6;Parent=MS.gene85203.t1 |
chr2.4 | CDS | 4146864 | 4146968 | 4146864 | ID=cds.MS.gene85203.t1;Parent=MS.gene85203.t1 |
chr2.4 | exon | 4147461 | 4147484 | 4147461 | ID=MS.gene85203.t1.exon7;Parent=MS.gene85203.t1 |
chr2.4 | CDS | 4147461 | 4147484 | 4147461 | ID=cds.MS.gene85203.t1;Parent=MS.gene85203.t1 |
Gene Sequence |
Protein sequence |