Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36412.t1 | RHN76286.1 | 81.4 | 247 | 22 | 2 | 1 | 223 | 1 | 247 | 2.80E-100 | 374.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36412.t1 | P74327 | 46.3 | 108 | 53 | 2 | 97 | 204 | 30 | 132 | 5.7e-17 | 89.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36412.t1 | A0A072VD47 | 81.4 | 247 | 22 | 2 | 1 | 223 | 1 | 247 | 2.0e-100 | 374.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene36412 | 0.819395 | 1.19E-52 | -1.69E-46 |
| MS.gene049171 | MS.gene36412 | 0.807969 | 3.90E-50 | -1.69E-46 |
| MS.gene049257 | MS.gene36412 | 0.827655 | 1.39E-54 | -1.69E-46 |
| MS.gene049805 | MS.gene36412 | 0.803554 | 3.30E-49 | -1.69E-46 |
| MS.gene050315 | MS.gene36412 | 0.808008 | 3.82E-50 | -1.69E-46 |
| MS.gene050426 | MS.gene36412 | -0.802332 | 5.90E-49 | -1.69E-46 |
| MS.gene050593 | MS.gene36412 | 0.804679 | 1.92E-49 | -1.69E-46 |
| MS.gene050670 | MS.gene36412 | 0.812854 | 3.44E-51 | -1.69E-46 |
| MS.gene050747 | MS.gene36412 | 0.809137 | 2.20E-50 | -1.69E-46 |
| MS.gene050812 | MS.gene36412 | 0.855121 | 7.80E-62 | -1.69E-46 |
| MS.gene05081 | MS.gene36412 | 0.853857 | 1.81E-61 | -1.69E-46 |
| MS.gene050950 | MS.gene36412 | 0.804199 | 2.42E-49 | -1.69E-46 |
| MS.gene051244 | MS.gene36412 | 0.806783 | 6.96E-50 | -1.69E-46 |
| MS.gene051387 | MS.gene36412 | 0.818417 | 1.98E-52 | -1.69E-46 |
| MS.gene051525 | MS.gene36412 | 0.834932 | 2.25E-56 | -1.69E-46 |
| MS.gene051552 | MS.gene36412 | -0.814629 | 1.40E-51 | -1.69E-46 |
| MS.gene051582 | MS.gene36412 | 0.825767 | 3.92E-54 | -1.69E-46 |
| MS.gene051666 | MS.gene36412 | 0.824071 | 9.84E-54 | -1.69E-46 |
| MS.gene051838 | MS.gene36412 | 0.832936 | 7.11E-56 | -1.69E-46 |
| MS.gene052134 | MS.gene36412 | 0.800639 | 1.31E-48 | -1.69E-46 |
| MS.gene052469 | MS.gene36412 | 0.841117 | 5.77E-58 | -1.69E-46 |
| MS.gene052481 | MS.gene36412 | 0.80923 | 2.10E-50 | -1.69E-46 |
| MS.gene052870 | MS.gene36412 | 0.807548 | 4.79E-50 | -1.69E-46 |
| MS.gene052872 | MS.gene36412 | 0.810007 | 1.43E-50 | -1.69E-46 |
| MS.gene053107 | MS.gene36412 | 0.826447 | 2.70E-54 | -1.69E-46 |
| MS.gene053330 | MS.gene36412 | 0.836342 | 9.90E-57 | -1.69E-46 |
| MS.gene053479 | MS.gene36412 | 0.8023 | 5.99E-49 | -1.69E-46 |
| MS.gene053579 | MS.gene36412 | 0.850542 | 1.59E-60 | -1.69E-46 |
| MS.gene053824 | MS.gene36412 | 0.802652 | 5.07E-49 | -1.69E-46 |
| MS.gene054107 | MS.gene36412 | 0.815073 | 1.11E-51 | -1.69E-46 |
| MS.gene054719 | MS.gene36412 | 0.815064 | 1.12E-51 | -1.69E-46 |
| MS.gene054884 | MS.gene36412 | -0.843077 | 1.75E-58 | -1.69E-46 |
| MS.gene055206 | MS.gene36412 | 0.830771 | 2.43E-55 | -1.69E-46 |
| MS.gene055370 | MS.gene36412 | 0.859512 | 3.93E-63 | -1.69E-46 |
| MS.gene055539 | MS.gene36412 | 0.853496 | 2.30E-61 | -1.69E-46 |
| MS.gene05553 | MS.gene36412 | 0.818086 | 2.35E-52 | -1.69E-46 |
| MS.gene05556 | MS.gene36412 | 0.809704 | 1.66E-50 | -1.69E-46 |
| MS.gene055605 | MS.gene36412 | 0.823234 | 1.55E-53 | -1.69E-46 |
| MS.gene056633 | MS.gene36412 | 0.847701 | 9.79E-60 | -1.69E-46 |
| MS.gene056664 | MS.gene36412 | 0.821494 | 3.92E-53 | -1.69E-46 |
| MS.gene056796 | MS.gene36412 | 0.806263 | 8.95E-50 | -1.69E-46 |
| MS.gene056877 | MS.gene36412 | 0.821057 | 4.94E-53 | -1.69E-46 |
| MS.gene057011 | MS.gene36412 | 0.804989 | 1.66E-49 | -1.69E-46 |
| MS.gene057032 | MS.gene36412 | 0.808637 | 2.81E-50 | -1.69E-46 |
| MS.gene057196 | MS.gene36412 | 0.826553 | 2.55E-54 | -1.69E-46 |
| MS.gene057332 | MS.gene36412 | 0.857936 | 1.16E-62 | -1.69E-46 |
| MS.gene057658 | MS.gene36412 | 0.824666 | 7.13E-54 | -1.69E-46 |
| MS.gene058276 | MS.gene36412 | 0.823063 | 1.69E-53 | -1.69E-46 |
| MS.gene05837 | MS.gene36412 | 0.815186 | 1.05E-51 | -1.69E-46 |
| MS.gene058418 | MS.gene36412 | -0.805371 | 1.38E-49 | -1.69E-46 |
| MS.gene058444 | MS.gene36412 | 0.817565 | 3.09E-52 | -1.69E-46 |
| MS.gene058544 | MS.gene36412 | 0.803891 | 2.81E-49 | -1.69E-46 |
| MS.gene058700 | MS.gene36412 | 0.813118 | 3.01E-51 | -1.69E-46 |
| MS.gene058746 | MS.gene36412 | 0.84218 | 3.03E-58 | -1.69E-46 |
| MS.gene058838 | MS.gene36412 | 0.82971 | 4.42E-55 | -1.69E-46 |
| MS.gene059023 | MS.gene36412 | 0.826647 | 2.42E-54 | -1.69E-46 |
| MS.gene059141 | MS.gene36412 | 0.800102 | 1.69E-48 | -1.69E-46 |
| MS.gene05914 | MS.gene36412 | 0.828426 | 9.05E-55 | -1.69E-46 |
| MS.gene05934 | MS.gene36412 | 0.806167 | 9.38E-50 | -1.69E-46 |
| MS.gene059512 | MS.gene36412 | 0.830252 | 3.26E-55 | -1.69E-46 |
| MS.gene060087 | MS.gene36412 | -0.802197 | 6.29E-49 | -1.69E-46 |
| MS.gene060407 | MS.gene36412 | 0.821561 | 3.78E-53 | -1.69E-46 |
| MS.gene06092 | MS.gene36412 | 0.841272 | 5.25E-58 | -1.69E-46 |
| MS.gene061150 | MS.gene36412 | 0.812594 | 3.92E-51 | -1.69E-46 |
| MS.gene061231 | MS.gene36412 | 0.846633 | 1.92E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36412.t1 | MTR_2g100220 | 81.377 | 247 | 22 | 2 | 1 | 223 | 1 | 247 | 4.35e-141 | 395 |
| MS.gene36412.t1 | MTR_2g100220 | 81.377 | 247 | 22 | 2 | 1 | 223 | 1 | 247 | 6.23e-141 | 395 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36412.t1 | AT1G55140 | 56.621 | 219 | 76 | 1 | 22 | 221 | 10 | 228 | 3.94e-83 | 247 |
| MS.gene36412.t1 | AT3G13740 | 60.000 | 215 | 70 | 1 | 23 | 221 | 10 | 224 | 8.18e-83 | 247 |
| MS.gene36412.t1 | AT3G13740 | 60.000 | 215 | 70 | 1 | 23 | 221 | 10 | 224 | 7.20e-82 | 245 |
| MS.gene36412.t1 | AT3G13740 | 71.812 | 149 | 42 | 0 | 73 | 221 | 1 | 149 | 6.19e-72 | 216 |
| MS.gene36412.t1 | AT3G13740 | 59.563 | 183 | 58 | 1 | 23 | 189 | 10 | 192 | 1.03e-67 | 207 |
| MS.gene36412.t1 | AT3G13740 | 54.430 | 158 | 56 | 1 | 23 | 164 | 10 | 167 | 2.21e-52 | 167 |
| MS.gene36412.t1 | AT1G55140 | 52.201 | 159 | 57 | 1 | 22 | 161 | 10 | 168 | 2.34e-50 | 162 |
| MS.gene36412.t1 | AT3G13740 | 54.225 | 142 | 49 | 1 | 23 | 148 | 10 | 151 | 9.82e-45 | 147 |
Find 37 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAACACGATGAAACCTATT+TGG | 0.206219 | 2.2:+2895966 | MS.gene36412:CDS |
| CTCGTCAATGCCTTTGAATT+TGG | 0.238218 | 2.2:+2899302 | MS.gene36412:CDS |
| CTAGGAGCGTTGCGGTTATA+AGG | 0.245759 | 2.2:-2895799 | None:intergenic |
| GCTGCTACCTTAGCTTATAT+TGG | 0.304372 | 2.2:+2896048 | MS.gene36412:CDS |
| AGAGAAGGAGATTGTGGTTT+TGG | 0.333213 | 2.2:-2895838 | None:intergenic |
| GAACGAGGTTTAACGACTTT+AGG | 0.348737 | 2.2:-2896015 | None:intergenic |
| CCTATTTGGGATATGATAGA+TGG | 0.357513 | 2.2:+2895980 | MS.gene36412:CDS |
| CAAGCAAAACTAAGACAAAA+AGG | 0.357900 | 2.2:+2898733 | MS.gene36412:CDS |
| TATTGGTGATTGCATTTATG+AGG | 0.357917 | 2.2:+2896065 | MS.gene36412:CDS |
| CCATCTATCATATCCCAAAT+AGG | 0.385713 | 2.2:-2895980 | None:intergenic |
| GTTTATCTTCTTCATTATCA+TGG | 0.401690 | 2.2:+2895707 | MS.gene36412:CDS |
| TAGGAGCGTTGCGGTTATAA+GGG | 0.424850 | 2.2:-2895798 | None:intergenic |
| AACCAGTAGTAAAAGCTTCA+TGG | 0.429937 | 2.2:+2895758 | MS.gene36412:CDS |
| GTCAATGCCTTTGAATTTGG+AGG | 0.436135 | 2.2:+2899305 | MS.gene36412:CDS |
| TTTCAATTTGGATGAAGAAA+AGG | 0.442453 | 2.2:-2895737 | None:intergenic |
| GAACACGATGAAACCTATTT+GGG | 0.451212 | 2.2:+2895967 | MS.gene36412:CDS |
| TTTGACAAATGTGAATCGCT+TGG | 0.467151 | 2.2:+2899245 | MS.gene36412:CDS |
| TCCTTACGGGTAGAAGGTGC+TGG | 0.475784 | 2.2:-2895868 | None:intergenic |
| ATTGTATTCTTCAATACTCA+AGG | 0.493781 | 2.2:-2897097 | None:intergenic |
| TTTCAGGGATGTTCTTCGAT+GGG | 0.502029 | 2.2:+2898695 | MS.gene36412:intron |
| ATTTCAGGGATGTTCTTCGA+TGG | 0.515754 | 2.2:+2898694 | MS.gene36412:intron |
| ACCAGTAGTAAAAGCTTCAT+GGG | 0.516338 | 2.2:+2895759 | MS.gene36412:CDS |
| ATTAATTCCTCCAAATTCAA+AGG | 0.528573 | 2.2:-2899312 | None:intergenic |
| TTAACGACTTTAGGTGGAGT+TGG | 0.531286 | 2.2:-2896006 | None:intergenic |
| GCAATCACCAATATAAGCTA+AGG | 0.541049 | 2.2:-2896055 | None:intergenic |
| AATTCATTCATCATCATGCA+AGG | 0.547436 | 2.2:+2895685 | None:intergenic |
| GGTGCTGGTGAAGTGAGAGA+AGG | 0.548993 | 2.2:-2895853 | None:intergenic |
| CGAGGTTTAACGACTTTAGG+TGG | 0.556732 | 2.2:-2896012 | None:intergenic |
| TTCAGGGATGTTCTTCGATG+GGG | 0.583400 | 2.2:+2898696 | MS.gene36412:intron |
| ATTTCTTATCAGATCAAGAG+AGG | 0.597984 | 2.2:+2897999 | MS.gene36412:CDS |
| TATTCTTCAATACTCAAGGG+TGG | 0.605648 | 2.2:-2897093 | None:intergenic |
| TTGTATTCTTCAATACTCAA+GGG | 0.608670 | 2.2:-2897096 | None:intergenic |
| ACATGCAGCTATATGCTCGT+AGG | 0.628628 | 2.2:+2897058 | MS.gene36412:intron |
| GAAGTGAGAGAAGGAGATTG+TGG | 0.633379 | 2.2:-2895844 | None:intergenic |
| AGCGAACAACTGCCATCACA+CGG | 0.636186 | 2.2:-2897122 | None:intergenic |
| AGAATACAATGACCGTGTGA+TGG | 0.681673 | 2.2:+2897110 | MS.gene36412:CDS |
| GATGGCAGTTGTTCGCTGTG+AGG | 0.703384 | 2.2:+2897128 | MS.gene36412:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGATAGTATTAAAATTAATA+AGG | + | chr2.2:2896496-2896515 | MS.gene36412:intron | 10.0% |
| !!! | AAAAGTTATTTTATTATGAT+TGG | + | chr2.2:2897467-2897486 | MS.gene36412:intron | 10.0% |
| !!! | AAAGTTATTTTATTATGATT+GGG | + | chr2.2:2897468-2897487 | MS.gene36412:intron | 10.0% |
| !! | AAAGTTATACAAATTAGATA+TGG | - | chr2.2:2897414-2897433 | None:intergenic | 15.0% |
| !! | AAGTTATACAAATTAGATAT+GGG | - | chr2.2:2897413-2897432 | None:intergenic | 15.0% |
| !! | AGAAAATATTGTTATCAAAT+AGG | + | chr2.2:2896855-2896874 | MS.gene36412:intron | 15.0% |
| !! | ATTAGAGAATAATAAATACT+AGG | - | chr2.2:2896110-2896129 | None:intergenic | 15.0% |
| !! | ATTTAAATTGAAAACAAAGT+AGG | - | chr2.2:2897176-2897195 | None:intergenic | 15.0% |
| !! | TTAAAAAAGTTAGATAAGTA+AGG | + | chr2.2:2897281-2897300 | MS.gene36412:intron | 15.0% |
| !! | TTTAAATTGAAAACAAAGTA+GGG | - | chr2.2:2897175-2897194 | None:intergenic | 15.0% |
| !! | TTTCAATTTAAATTTACATG+CGG | + | chr2.2:2897183-2897202 | MS.gene36412:intron | 15.0% |
| !!! | ACATTTCTTTAATTTTAAAG+TGG | + | chr2.2:2898874-2898893 | MS.gene36412:intron | 15.0% |
| !!! | TCTAATTTGTATAACTTTAT+AGG | + | chr2.2:2897416-2897435 | MS.gene36412:intron | 15.0% |
| !!! | TTTTGATGAATTTTATTTCA+GGG | + | chr2.2:2898680-2898699 | MS.gene36412:intron | 15.0% |
| !! | AAGATTTACATTTATATCAC+TGG | - | chr2.2:2898836-2898855 | None:intergenic | 20.0% |
| !! | AATAACAAATAAAATCCAAC+AGG | - | chr2.2:2897878-2897897 | None:intergenic | 20.0% |
| !! | AATATCAATTAAGAAACAGA+AGG | - | chr2.2:2897803-2897822 | None:intergenic | 20.0% |
| !! | AATCAAAATCGTAATACAAT+TGG | - | chr2.2:2896690-2896709 | None:intergenic | 20.0% |
| !! | AGAAGAAACTTCATTAAATA+TGG | - | chr2.2:2898084-2898103 | None:intergenic | 20.0% |
| !! | ATAGTTTCAAATAAAAAGCA+CGG | - | chr2.2:2898436-2898455 | None:intergenic | 20.0% |
| !! | ATATCAATTAAGAAACAGAA+GGG | - | chr2.2:2897802-2897821 | None:intergenic | 20.0% |
| !! | CAAAAGGAATGTATATTAAA+TGG | - | chr2.2:2899101-2899120 | None:intergenic | 20.0% |
| !! | CTTCATTAAATATGGAAAAT+AGG | - | chr2.2:2898076-2898095 | None:intergenic | 20.0% |
| !! | GAAAAACTAATGTTAGAATT+GGG | + | chr2.2:2899267-2899286 | MS.gene36412:CDS | 20.0% |
| !!! | AATGACTTATGCTTTAAATA+GGG | + | chr2.2:2897538-2897557 | MS.gene36412:intron | 20.0% |
| !!! | CTGTTTCTTAATTGATATTT+TGG | + | chr2.2:2897804-2897823 | MS.gene36412:intron | 20.0% |
| !!! | CTTTTGATGAATTTTATTTC+AGG | + | chr2.2:2898679-2898698 | MS.gene36412:intron | 20.0% |
| !!! | TAATGACTTATGCTTTAAAT+AGG | + | chr2.2:2897537-2897556 | MS.gene36412:intron | 20.0% |
| !!! | TATATATTTTCCAAACTTTG+TGG | + | chr2.2:2896571-2896590 | MS.gene36412:intron | 20.0% |
| !!! | TCCTATTTGTTATTTTCAAT+TGG | + | chr2.2:2896418-2896437 | MS.gene36412:intron | 20.0% |
| !!! | TTTTTTCAACAACATATCAA+GGG | + | chr2.2:2896759-2896778 | MS.gene36412:intron | 20.0% |
| !!! | TTTTTTTCAACAACATATCA+AGG | + | chr2.2:2896758-2896777 | MS.gene36412:intron | 20.0% |
| ! | AAAAAAAGCAAACATACTTC+TGG | + | chr2.2:2898533-2898552 | MS.gene36412:intron | 25.0% |
| ! | AAATAACAAATAGGATGCAA+AGG | - | chr2.2:2896413-2896432 | None:intergenic | 25.0% |
| ! | AAATAAGAAGATCTTTGAGT+TGG | + | chr2.2:2896457-2896476 | MS.gene36412:intron | 25.0% |
| ! | AATAACAAATAGGATGCAAA+GGG | - | chr2.2:2896412-2896431 | None:intergenic | 25.0% |
| ! | ATATCAAGGGAAAAATTGAT+AGG | + | chr2.2:2896772-2896791 | MS.gene36412:intron | 25.0% |
| ! | ATATGAAGATTTATCCTTGT+TGG | + | chr2.2:2898142-2898161 | MS.gene36412:intron | 25.0% |
| ! | ATCATGAGATAAACTCTATA+GGG | - | chr2.2:2898210-2898229 | None:intergenic | 25.0% |
| ! | ATTAATTCCTCCAAATTCAA+AGG | - | chr2.2:2899315-2899334 | None:intergenic | 25.0% |
| ! | ATTATTCCTATCAAACTATC+TGG | - | chr2.2:2899134-2899153 | None:intergenic | 25.0% |
| ! | ATTGTATTCTTCAATACTCA+AGG | - | chr2.2:2897100-2897119 | None:intergenic | 25.0% |
| ! | CATAAATCATGATTTACTTC+TGG | - | chr2.2:2897512-2897531 | None:intergenic | 25.0% |
| ! | GAAATTGCAAAATAATCATG+TGG | - | chr2.2:2899053-2899072 | None:intergenic | 25.0% |
| ! | GATACACATTGTAATTAGAT+TGG | - | chr2.2:2897926-2897945 | None:intergenic | 25.0% |
| ! | GCCAATTGAAAATAACAAAT+AGG | - | chr2.2:2896422-2896441 | None:intergenic | 25.0% |
| ! | GGAAAAACTAATGTTAGAAT+TGG | + | chr2.2:2899266-2899285 | MS.gene36412:CDS | 25.0% |
| ! | GGACTATTACTTTAAATTGT+AGG | + | chr2.2:2896537-2896556 | MS.gene36412:intron | 25.0% |
| ! | GTTTATCTTCTTCATTATCA+TGG | + | chr2.2:2895707-2895726 | MS.gene36412:CDS | 25.0% |
| ! | TAATTATTCGTACCAAACAA+AGG | + | chr2.2:2896126-2896145 | MS.gene36412:intron | 25.0% |
| ! | TAGAGTTGAAGTATAAGATT+TGG | + | chr2.2:2896941-2896960 | MS.gene36412:intron | 25.0% |
| ! | TATGAAGATTTATCCTTGTT+GGG | + | chr2.2:2898143-2898162 | MS.gene36412:intron | 25.0% |
| ! | TCTTAATTTCTATCACGATT+GGG | + | chr2.2:2896323-2896342 | MS.gene36412:intron | 25.0% |
| ! | TGAAGTTTACAAAGAGAAAT+GGG | - | chr2.2:2897652-2897671 | None:intergenic | 25.0% |
| ! | TTGTATTCTTCAATACTCAA+GGG | - | chr2.2:2897099-2897118 | None:intergenic | 25.0% |
| ! | TTTCAATTTGGATGAAGAAA+AGG | - | chr2.2:2895740-2895759 | None:intergenic | 25.0% |
| !! | AACACTTTTCAGATCATAAA+AGG | - | chr2.2:2899173-2899192 | None:intergenic | 25.0% |
| !! | ATGACTTATGCTTTAAATAG+GGG | + | chr2.2:2897539-2897558 | MS.gene36412:intron | 25.0% |
| !!! | ACAAATTTTTGAGCTTATAG+CGG | - | chr2.2:2896912-2896931 | None:intergenic | 25.0% |
| !!! | ATCTGGTTTTCAATTACAAA+AGG | - | chr2.2:2899117-2899136 | None:intergenic | 25.0% |
| !!! | CTTAATTGATATTTTGGTCA+AGG | + | chr2.2:2897810-2897829 | MS.gene36412:intron | 25.0% |
| !!! | GTTAGAATATGTTACTTTCA+GGG | + | chr2.2:2898021-2898040 | MS.gene36412:intron | 25.0% |
| !!! | TTTTACTACTGGTTTCAATT+TGG | - | chr2.2:2895752-2895771 | None:intergenic | 25.0% |
| AACTTCCTAAATCCCAATTA+GGG | - | chr2.2:2897381-2897400 | None:intergenic | 30.0% | |
| AAGGAAAACAAAGCTAAATG+TGG | + | chr2.2:2896515-2896534 | MS.gene36412:intron | 30.0% | |
| AGGAAAACAAAGCTAAATGT+GGG | + | chr2.2:2896516-2896535 | MS.gene36412:intron | 30.0% | |
| ATCCTGCAAACAAACAAAAA+AGG | - | chr2.2:2897951-2897970 | None:intergenic | 30.0% | |
| ATTCTAGTGCTAGTTCAATA+GGG | + | chr2.2:2898583-2898602 | MS.gene36412:intron | 30.0% | |
| ATTTCTTATCAGATCAAGAG+AGG | + | chr2.2:2897999-2898018 | MS.gene36412:CDS | 30.0% | |
| CAAGCAAAACTAAGACAAAA+AGG | + | chr2.2:2898733-2898752 | MS.gene36412:CDS | 30.0% | |
| CATTTCTCTTTGTAAACTTC+AGG | + | chr2.2:2897651-2897670 | MS.gene36412:intron | 30.0% | |
| CTGAAGTTTACAAAGAGAAA+TGG | - | chr2.2:2897653-2897672 | None:intergenic | 30.0% | |
| CTTACGAATTCAAAATCTTC+TGG | - | chr2.2:2896232-2896251 | None:intergenic | 30.0% | |
| GATCATGAGATAAACTCTAT+AGG | - | chr2.2:2898211-2898230 | None:intergenic | 30.0% | |
| GTCTTAATTTCTATCACGAT+TGG | + | chr2.2:2896322-2896341 | MS.gene36412:intron | 30.0% | |
| TAAATTTACATGCGGAAAGA+CGG | + | chr2.2:2897191-2897210 | MS.gene36412:intron | 30.0% | |
| TAACTTCCTAAATCCCAATT+AGG | - | chr2.2:2897382-2897401 | None:intergenic | 30.0% | |
| TAGTAAGTTCCTTCAAACTT+CGG | + | chr2.2:2898802-2898821 | MS.gene36412:intron | 30.0% | |
| TATTCTAGTGCTAGTTCAAT+AGG | + | chr2.2:2898582-2898601 | MS.gene36412:intron | 30.0% | |
| TGAAAACCAGATAGTTTGAT+AGG | + | chr2.2:2899125-2899144 | MS.gene36412:intron | 30.0% | |
| TTTGAATTCGTAAGGTTTAG+TGG | + | chr2.2:2896238-2896257 | MS.gene36412:intron | 30.0% | |
| ! | CAGAAGATTTTGAATTCGTA+AGG | + | chr2.2:2896230-2896249 | MS.gene36412:intron | 30.0% |
| ! | CGGAAATGTAATTTTCCTTA+CGG | - | chr2.2:2895885-2895904 | None:intergenic | 30.0% |
| ! | GCTTTTGCAAATACAAACTT+AGG | - | chr2.2:2897684-2897703 | None:intergenic | 30.0% |
| ! | GGAAATGTAATTTTCCTTAC+GGG | - | chr2.2:2895884-2895903 | None:intergenic | 30.0% |
| ! | TATTGGTGATTGCATTTATG+AGG | + | chr2.2:2896065-2896084 | MS.gene36412:CDS | 30.0% |
| ! | TCTTCAATTTTGCCTATAGT+GGG | - | chr2.2:2895934-2895953 | None:intergenic | 30.0% |
| ! | TTCTTCAATTTTGCCTATAG+TGG | - | chr2.2:2895935-2895954 | None:intergenic | 30.0% |
| !! | ATGTTCTGAAATCTGTGTTA+AGG | + | chr2.2:2898329-2898348 | MS.gene36412:intron | 30.0% |
| !! | GGTTAGAATATGTTACTTTC+AGG | + | chr2.2:2898020-2898039 | MS.gene36412:intron | 30.0% |
| !!! | AATTGATATTTTGGTCAAGG+AGG | + | chr2.2:2897813-2897832 | MS.gene36412:intron | 30.0% |
| AAACAAGAAGCAGCAGAAAA+TGG | - | chr2.2:2897775-2897794 | None:intergenic | 35.0% | |
| AAATTTACATGCGGAAAGAC+GGG | + | chr2.2:2897192-2897211 | MS.gene36412:intron | 35.0% | |
| AACCAGTAGTAAAAGCTTCA+TGG | + | chr2.2:2895758-2895777 | MS.gene36412:CDS | 35.0% | |
| ACAAAATTGCAGTGAGCTAT+TGG | + | chr2.2:2896290-2896309 | MS.gene36412:intron | 35.0% | |
| ACACTCAGCATGATAAAAGT+TGG | + | chr2.2:2898615-2898634 | MS.gene36412:intron | 35.0% | |
| ACCAGTAGTAAAAGCTTCAT+GGG | + | chr2.2:2895759-2895778 | MS.gene36412:CDS | 35.0% | |
| ACTATCTACGACAACAATTG+AGG | - | chr2.2:2896483-2896502 | None:intergenic | 35.0% | |
| AGAACACGATGAAACCTATT+TGG | + | chr2.2:2895966-2895985 | MS.gene36412:CDS | 35.0% | |
| AGATTTCAGAACATCACACT+AGG | - | chr2.2:2898323-2898342 | None:intergenic | 35.0% | |
| CAACCTAGTTCAATAGACAT+TGG | - | chr2.2:2899215-2899234 | None:intergenic | 35.0% | |
| CAATGTCTATTGAACTAGGT+TGG | + | chr2.2:2899213-2899232 | MS.gene36412:intron | 35.0% | |
| CCATCTATCATATCCCAAAT+AGG | - | chr2.2:2895983-2896002 | None:intergenic | 35.0% | |
| GAAAACTCTACCACAAAGTT+TGG | - | chr2.2:2896584-2896603 | None:intergenic | 35.0% | |
| GAACACGATGAAACCTATTT+GGG | + | chr2.2:2895967-2895986 | MS.gene36412:CDS | 35.0% | |
| GCAATCACCAATATAAGCTA+AGG | - | chr2.2:2896058-2896077 | None:intergenic | 35.0% | |
| GTAGATAAGTTAACCGATAG+TGG | + | chr2.2:2896201-2896220 | MS.gene36412:intron | 35.0% | |
| TAGCAGAATTGTGGCATAAT+TGG | - | chr2.2:2898564-2898583 | None:intergenic | 35.0% | |
| TATCTCATGATCCTGAAAAC+AGG | + | chr2.2:2898219-2898238 | MS.gene36412:intron | 35.0% | |
| TATTCTTCAATACTCAAGGG+TGG | - | chr2.2:2897096-2897115 | None:intergenic | 35.0% | |
| TGTGCTTATTGAATTTCTCG+TGG | - | chr2.2:2897584-2897603 | None:intergenic | 35.0% | |
| TTCTAGTGCTAGTTCAATAG+GGG | + | chr2.2:2898584-2898603 | MS.gene36412:intron | 35.0% | |
| TTTGACAAATGTGAATCGCT+TGG | + | chr2.2:2899245-2899264 | MS.gene36412:CDS | 35.0% | |
| ! | ATGGAAAATAGGCGTGTTTT+GGG | - | chr2.2:2898065-2898084 | None:intergenic | 35.0% |
| ! | ATTTTCATCTGTCTCATGGT+TGG | + | chr2.2:2898466-2898485 | MS.gene36412:intron | 35.0% |
| ! | CAGCAGAAAATGGTGATTTT+GGG | - | chr2.2:2897765-2897784 | None:intergenic | 35.0% |
| ! | CCTATTTGGGATATGATAGA+TGG | + | chr2.2:2895980-2895999 | MS.gene36412:CDS | 35.0% |
| ! | GACTTTTGTGTAGAAATGTC+CGG | + | chr2.2:2898389-2898408 | MS.gene36412:intron | 35.0% |
| ! | TAATTTTCCTTACGGGTAGA+AGG | - | chr2.2:2895877-2895896 | None:intergenic | 35.0% |
| ! | TATGGAAAATAGGCGTGTTT+TGG | - | chr2.2:2898066-2898085 | None:intergenic | 35.0% |
| ! | TGAGATTTTCATCTGTCTCA+TGG | + | chr2.2:2898462-2898481 | MS.gene36412:intron | 35.0% |
| !!! | GTCCTTTTTTGTTTGTTTGC+AGG | + | chr2.2:2897946-2897965 | MS.gene36412:intron | 35.0% |
| !!! | TTTCTTATTTTCGCCCAACA+AGG | - | chr2.2:2898159-2898178 | None:intergenic | 35.0% |
| ACCAAACAAAGGTTCTGTTG+CGG | + | chr2.2:2896137-2896156 | MS.gene36412:intron | 40.0% | |
| ACGCCAATGTCTATTGAACT+AGG | + | chr2.2:2899209-2899228 | MS.gene36412:intron | 40.0% | |
| AGAACATCACACTAGGTTTC+AGG | - | chr2.2:2898316-2898335 | None:intergenic | 40.0% | |
| AGAATACAATGACCGTGTGA+TGG | + | chr2.2:2897110-2897129 | MS.gene36412:CDS | 40.0% | |
| AGACATTGGCGTTAGAAAAC+AGG | - | chr2.2:2899201-2899220 | None:intergenic | 40.0% | |
| AGACTCATGTCACCCTAATT+GGG | + | chr2.2:2897366-2897385 | MS.gene36412:intron | 40.0% | |
| AGGGGAAAAAGACATCATTC+AGG | + | chr2.2:2897557-2897576 | MS.gene36412:intron | 40.0% | |
| ATTTCAGGGATGTTCTTCGA+TGG | + | chr2.2:2898694-2898713 | MS.gene36412:intron | 40.0% | |
| CATGATCCTGAAAACAGGAT+TGG | + | chr2.2:2898224-2898243 | MS.gene36412:intron | 40.0% | |
| CTCGTCAATGCCTTTGAATT+TGG | + | chr2.2:2899302-2899321 | MS.gene36412:CDS | 40.0% | |
| GAACGAGGTTTAACGACTTT+AGG | - | chr2.2:2896018-2896037 | None:intergenic | 40.0% | |
| GATGAGAAACCGAAGTTTGA+AGG | - | chr2.2:2898814-2898833 | None:intergenic | 40.0% | |
| GCACTAGAATAGCAGAATTG+TGG | - | chr2.2:2898573-2898592 | None:intergenic | 40.0% | |
| GCAGCATTAAAAACAGAACG+AGG | - | chr2.2:2896033-2896052 | None:intergenic | 40.0% | |
| GCTGCTACCTTAGCTTATAT+TGG | + | chr2.2:2896048-2896067 | MS.gene36412:CDS | 40.0% | |
| GGGGAAAAAGACATCATTCA+GGG | + | chr2.2:2897558-2897577 | MS.gene36412:intron | 40.0% | |
| GTCAATGCCTTTGAATTTGG+AGG | + | chr2.2:2899305-2899324 | MS.gene36412:CDS | 40.0% | |
| GTTGCACAGTTAGCCATTAA+CGG | + | chr2.2:2899020-2899039 | MS.gene36412:intron | 40.0% | |
| TAGACGAAACCAATAAGCAG+CGG | + | chr2.2:2898503-2898522 | MS.gene36412:intron | 40.0% | |
| TAGTTTCTCTCACCTTGGTT+GGG | + | chr2.2:2896621-2896640 | MS.gene36412:intron | 40.0% | |
| TGTCACCCTAATTGGGATTT+AGG | + | chr2.2:2897373-2897392 | MS.gene36412:intron | 40.0% | |
| TTAACGACTTTAGGTGGAGT+TGG | - | chr2.2:2896009-2896028 | None:intergenic | 40.0% | |
| TTCAAAACTCCGCTGCTTAT+TGG | - | chr2.2:2898515-2898534 | None:intergenic | 40.0% | |
| TTTCAGGGATGTTCTTCGAT+GGG | + | chr2.2:2898695-2898714 | MS.gene36412:intron | 40.0% | |
| ! | AATGTGAGTTTGACTTCAGC+CGG | + | chr2.2:2897842-2897861 | MS.gene36412:intron | 40.0% |
| ! | AGAACACCAATCCTGTTTTC+AGG | - | chr2.2:2898233-2898252 | None:intergenic | 40.0% |
| ! | AGAGAAGGAGATTGTGGTTT+TGG | - | chr2.2:2895841-2895860 | None:intergenic | 40.0% |
| ! | GCAGCAGAAAATGGTGATTT+TGG | - | chr2.2:2897766-2897785 | None:intergenic | 40.0% |
| ! | TCCCATGAAGCTTTTACTAC+TGG | - | chr2.2:2895763-2895782 | None:intergenic | 40.0% |
| ! | TGGAAAATAGGCGTGTTTTG+GGG | - | chr2.2:2898064-2898083 | None:intergenic | 40.0% |
| !! | ATTTTGCCTATAGTGGGAAG+TGG | - | chr2.2:2895928-2895947 | None:intergenic | 40.0% |
| !! | GGTGTTCTGAAATCTGTGTT+GGG | + | chr2.2:2898245-2898264 | MS.gene36412:intron | 40.0% |
| !! | GTGTTCTGAAATCTGTGTTG+GGG | + | chr2.2:2898246-2898265 | MS.gene36412:intron | 40.0% |
| !! | TCTTCTGGCTTATCCACTAT+CGG | - | chr2.2:2896217-2896236 | None:intergenic | 40.0% |
| !! | TGGTGTTCTGAAATCTGTGT+TGG | + | chr2.2:2898244-2898263 | MS.gene36412:intron | 40.0% |
| !! | TTGTTACTCTCTGAGACTTC+AGG | + | chr2.2:2896371-2896390 | MS.gene36412:intron | 40.0% |
| ACATGCAGCTATATGCTCGT+AGG | + | chr2.2:2897058-2897077 | MS.gene36412:intron | 45.0% | |
| AGGGTGACATGAGTCTGAAA+TGG | - | chr2.2:2897362-2897381 | None:intergenic | 45.0% | |
| AGTTTCTCTCACCTTGGTTG+GGG | + | chr2.2:2896622-2896641 | MS.gene36412:intron | 45.0% | |
| ATATGTTTCCACCCCAACCA+AGG | - | chr2.2:2896636-2896655 | None:intergenic | 45.0% | |
| CAGACTCATGTCACCCTAAT+TGG | + | chr2.2:2897365-2897384 | MS.gene36412:intron | 45.0% | |
| CCAAGGTGAGAGAAACTACA+CGG | - | chr2.2:2896619-2896638 | None:intergenic | 45.0% | |
| CGAGGTTTAACGACTTTAGG+TGG | - | chr2.2:2896015-2896034 | None:intergenic | 45.0% | |
| GAAGTGAGAGAAGGAGATTG+TGG | - | chr2.2:2895847-2895866 | None:intergenic | 45.0% | |
| GCGACTTAAACTACCAGTTC+CGG | - | chr2.2:2898411-2898430 | None:intergenic | 45.0% | |
| GGTTGGGGTGGAAACATATA+TGG | + | chr2.2:2896637-2896656 | MS.gene36412:intron | 45.0% | |
| GTAGTTTCTCTCACCTTGGT+TGG | + | chr2.2:2896620-2896639 | MS.gene36412:intron | 45.0% | |
| TATAGGGAGCAGTTCAAGAG+AGG | - | chr2.2:2898194-2898213 | None:intergenic | 45.0% | |
| TCCAACAGGAAATCACTAGC+CGG | - | chr2.2:2897864-2897883 | None:intergenic | 45.0% | |
| TCCGCAACAGAACCTTTGTT+TGG | - | chr2.2:2896141-2896160 | None:intergenic | 45.0% | |
| TGTGTAGAAATGTCCGGAAC+TGG | + | chr2.2:2898395-2898414 | MS.gene36412:intron | 45.0% | |
| TTCAGGGATGTTCTTCGATG+GGG | + | chr2.2:2898696-2898715 | MS.gene36412:intron | 45.0% | |
| ! | ACTAAGACAAAAAGGCGTGC+TGG | + | chr2.2:2898741-2898760 | MS.gene36412:CDS | 45.0% |
| ! | GGGTGACATGAGTCTGAAAT+GGG | - | chr2.2:2897361-2897380 | None:intergenic | 45.0% |
| ! | GGTGGTTGAGTGAGTTTTCT+AGG | - | chr2.2:2895820-2895839 | None:intergenic | 45.0% |
| !! | GGAAAATAGGCGTGTTTTGG+GGG | - | chr2.2:2898063-2898082 | None:intergenic | 45.0% |
| !! | TAGGAGCGTTGCGGTTATAA+GGG | - | chr2.2:2895801-2895820 | None:intergenic | 45.0% |
| !!! | GAAGGAGATTGTGGTTTTGG+TGG | - | chr2.2:2895838-2895857 | None:intergenic | 45.0% |
| !!! | TGAGTTTTCTAGGAGCGTTG+CGG | - | chr2.2:2895810-2895829 | None:intergenic | 45.0% |
| !!! | TGTCGCTTTTCGTGTGTTTG+AGG | - | chr2.2:2896804-2896823 | None:intergenic | 45.0% |
| AGCGAACAACTGCCATCACA+CGG | - | chr2.2:2897125-2897144 | None:intergenic | 50.0% | |
| AGTGGCGCGTTTGAGAAGAT+CGG | - | chr2.2:2895905-2895924 | None:intergenic | 50.0% | |
| CACAGTTAGCCATTAACGGC+TGG | + | chr2.2:2899024-2899043 | MS.gene36412:intron | 50.0% | |
| CCGTGTAGTTTCTCTCACCT+TGG | + | chr2.2:2896616-2896635 | MS.gene36412:intron | 50.0% | |
| !! | CTAGGAGCGTTGCGGTTATA+AGG | - | chr2.2:2895802-2895821 | None:intergenic | 50.0% |
| !!! | AAATAGGCGTGTTTTGGGGG+AGG | - | chr2.2:2898060-2898079 | None:intergenic | 50.0% |
| ACCAGCACCTTCTACCCGTA+AGG | + | chr2.2:2895867-2895886 | MS.gene36412:intron | 55.0% | |
| ATGTGGCAGCCAGCCGTTAA+TGG | - | chr2.2:2899036-2899055 | None:intergenic | 55.0% | |
| GATGGCAGTTGTTCGCTGTG+AGG | + | chr2.2:2897128-2897147 | MS.gene36412:CDS | 55.0% | |
| GCCACTCCACTTCCCACTAT+AGG | + | chr2.2:2895919-2895938 | MS.gene36412:intron | 55.0% | |
| GCCGGCTAGTGATTTCCTGT+TGG | + | chr2.2:2897860-2897879 | MS.gene36412:intron | 55.0% | |
| TTCTCTCACCTTGGTTGGGG+TGG | + | chr2.2:2896625-2896644 | MS.gene36412:intron | 55.0% | |
| ! | GCCTATAGTGGGAAGTGGAG+TGG | - | chr2.2:2895923-2895942 | None:intergenic | 55.0% |
| ! | TCCTTACGGGTAGAAGGTGC+TGG | - | chr2.2:2895871-2895890 | None:intergenic | 55.0% |
| !! | GGTGCTGGTGAAGTGAGAGA+AGG | - | chr2.2:2895856-2895875 | None:intergenic | 55.0% |
| !!! | AGGCGTGTTTTGGGGGAGGA+GGG | - | chr2.2:2898056-2898075 | None:intergenic | 60.0% |
| !!! | TAGGCGTGTTTTGGGGGAGG+AGG | - | chr2.2:2898057-2898076 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.2 | gene | 2895700 | 2899335 | 2895700 | ID=MS.gene36412 |
| chr2.2 | mRNA | 2895700 | 2899335 | 2895700 | ID=MS.gene36412.t1;Parent=MS.gene36412 |
| chr2.2 | exon | 2895700 | 2895883 | 2895700 | ID=MS.gene36412.t1.exon1;Parent=MS.gene36412.t1 |
| chr2.2 | CDS | 2895700 | 2895883 | 2895700 | ID=cds.MS.gene36412.t1;Parent=MS.gene36412.t1 |
| chr2.2 | exon | 2895953 | 2896086 | 2895953 | ID=MS.gene36412.t1.exon2;Parent=MS.gene36412.t1 |
| chr2.2 | CDS | 2895953 | 2896086 | 2895953 | ID=cds.MS.gene36412.t1;Parent=MS.gene36412.t1 |
| chr2.2 | exon | 2897066 | 2897155 | 2897066 | ID=MS.gene36412.t1.exon3;Parent=MS.gene36412.t1 |
| chr2.2 | CDS | 2897066 | 2897155 | 2897066 | ID=cds.MS.gene36412.t1;Parent=MS.gene36412.t1 |
| chr2.2 | exon | 2897968 | 2898020 | 2897968 | ID=MS.gene36412.t1.exon4;Parent=MS.gene36412.t1 |
| chr2.2 | CDS | 2897968 | 2898020 | 2897968 | ID=cds.MS.gene36412.t1;Parent=MS.gene36412.t1 |
| chr2.2 | exon | 2898701 | 2898803 | 2898701 | ID=MS.gene36412.t1.exon5;Parent=MS.gene36412.t1 |
| chr2.2 | CDS | 2898701 | 2898803 | 2898701 | ID=cds.MS.gene36412.t1;Parent=MS.gene36412.t1 |
| chr2.2 | exon | 2899231 | 2899335 | 2899231 | ID=MS.gene36412.t1.exon6;Parent=MS.gene36412.t1 |
| chr2.2 | CDS | 2899231 | 2899335 | 2899231 | ID=cds.MS.gene36412.t1;Parent=MS.gene36412.t1 |
| Gene Sequence |
| Protein sequence |
