Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98609.t1 | XP_003606096.1 | 97.9 | 188 | 4 | 0 | 1 | 188 | 1 | 188 | 7.70E-91 | 343.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98609.t1 | Q96KR6 | 31.4 | 102 | 66 | 1 | 85 | 182 | 80 | 181 | 5.3e-08 | 59.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98609.t1 | G7JH97 | 97.9 | 188 | 4 | 0 | 1 | 188 | 1 | 188 | 5.5e-91 | 343.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049170 | MS.gene98609 | 0.853741 | 1.95E-61 | -1.69E-46 |
| MS.gene050060 | MS.gene98609 | 0.863623 | 2.18E-64 | -1.69E-46 |
| MS.gene050133 | MS.gene98609 | -0.853347 | 2.54E-61 | -1.69E-46 |
| MS.gene050315 | MS.gene98609 | 0.810234 | 1.28E-50 | -1.69E-46 |
| MS.gene050397 | MS.gene98609 | 0.814983 | 1.17E-51 | -1.69E-46 |
| MS.gene050400 | MS.gene98609 | 0.842393 | 2.66E-58 | -1.69E-46 |
| MS.gene050404 | MS.gene98609 | 0.816385 | 5.68E-52 | -1.69E-46 |
| MS.gene050406 | MS.gene98609 | 0.848212 | 7.08E-60 | -1.69E-46 |
| MS.gene050426 | MS.gene98609 | -0.889735 | 1.86E-73 | -1.69E-46 |
| MS.gene050464 | MS.gene98609 | 0.850743 | 1.39E-60 | -1.69E-46 |
| MS.gene050529 | MS.gene98609 | 0.854127 | 1.51E-61 | -1.69E-46 |
| MS.gene050642 | MS.gene98609 | 0.81197 | 5.36E-51 | -1.69E-46 |
| MS.gene050670 | MS.gene98609 | 0.871163 | 8.42E-67 | -1.69E-46 |
| MS.gene050812 | MS.gene98609 | 0.824106 | 9.66E-54 | -1.69E-46 |
| MS.gene05081 | MS.gene98609 | 0.827323 | 1.67E-54 | -1.69E-46 |
| MS.gene05105 | MS.gene98609 | 0.825418 | 4.74E-54 | -1.69E-46 |
| MS.gene051171 | MS.gene98609 | 0.808405 | 3.15E-50 | -1.69E-46 |
| MS.gene051208 | MS.gene98609 | 0.810951 | 8.93E-51 | -1.69E-46 |
| MS.gene051242 | MS.gene98609 | 0.812445 | 4.22E-51 | -1.69E-46 |
| MS.gene051525 | MS.gene98609 | 0.883261 | 5.21E-71 | -1.69E-46 |
| MS.gene051552 | MS.gene98609 | -0.808108 | 3.64E-50 | -1.69E-46 |
| MS.gene051582 | MS.gene98609 | 0.82419 | 9.23E-54 | -1.69E-46 |
| MS.gene051838 | MS.gene98609 | 0.810093 | 1.37E-50 | -1.69E-46 |
| MS.gene051983 | MS.gene98609 | 0.821368 | 4.19E-53 | -1.69E-46 |
| MS.gene052011 | MS.gene98609 | -0.86208 | 6.53E-64 | -1.69E-46 |
| MS.gene052077 | MS.gene98609 | 0.864406 | 1.24E-64 | -1.69E-46 |
| MS.gene052134 | MS.gene98609 | 0.873472 | 1.43E-67 | -1.69E-46 |
| MS.gene052135 | MS.gene98609 | 0.854346 | 1.31E-61 | -1.69E-46 |
| MS.gene052136 | MS.gene98609 | 0.818272 | 2.14E-52 | -1.69E-46 |
| MS.gene052188 | MS.gene98609 | 0.847072 | 1.46E-59 | -1.69E-46 |
| MS.gene052253 | MS.gene98609 | 0.827724 | 1.34E-54 | -1.69E-46 |
| MS.gene052310 | MS.gene98609 | 0.840142 | 1.04E-57 | -1.69E-46 |
| MS.gene052340 | MS.gene98609 | 0.860217 | 2.41E-63 | -1.69E-46 |
| MS.gene052414 | MS.gene98609 | 0.806062 | 9.87E-50 | -1.69E-46 |
| MS.gene052469 | MS.gene98609 | 0.889181 | 3.05E-73 | -1.69E-46 |
| MS.gene052481 | MS.gene98609 | 0.832003 | 1.21E-55 | -1.69E-46 |
| MS.gene052501 | MS.gene98609 | 0.80087 | 1.18E-48 | -1.69E-46 |
| MS.gene052505 | MS.gene98609 | 0.815081 | 1.11E-51 | -1.69E-46 |
| MS.gene052589 | MS.gene98609 | 0.806304 | 8.78E-50 | -1.69E-46 |
| MS.gene052758 | MS.gene98609 | 0.817935 | 2.55E-52 | -1.69E-46 |
| MS.gene052870 | MS.gene98609 | 0.806309 | 8.76E-50 | -1.69E-46 |
| MS.gene052982 | MS.gene98609 | 0.803318 | 3.69E-49 | -1.69E-46 |
| MS.gene053209 | MS.gene98609 | 0.801742 | 7.80E-49 | -1.69E-46 |
| MS.gene053330 | MS.gene98609 | 0.889142 | 3.16E-73 | -1.69E-46 |
| MS.gene053557 | MS.gene98609 | 0.805995 | 1.02E-49 | -1.69E-46 |
| MS.gene053928 | MS.gene98609 | 0.805304 | 1.42E-49 | -1.69E-46 |
| MS.gene053971 | MS.gene98609 | 0.807631 | 4.60E-50 | -1.69E-46 |
| MS.gene054102 | MS.gene98609 | 0.823102 | 1.66E-53 | -1.69E-46 |
| MS.gene054107 | MS.gene98609 | 0.805748 | 1.15E-49 | -1.69E-46 |
| MS.gene054110 | MS.gene98609 | 0.814005 | 1.92E-51 | -1.69E-46 |
| MS.gene054183 | MS.gene98609 | 0.803582 | 3.25E-49 | -1.69E-46 |
| MS.gene054349 | MS.gene98609 | 0.837209 | 5.95E-57 | -1.69E-46 |
| MS.gene054556 | MS.gene98609 | 0.806729 | 7.14E-50 | -1.69E-46 |
| MS.gene054719 | MS.gene98609 | 0.84094 | 6.42E-58 | -1.69E-46 |
| MS.gene054884 | MS.gene98609 | -0.835032 | 2.12E-56 | -1.69E-46 |
| MS.gene055116 | MS.gene98609 | 0.833611 | 4.83E-56 | -1.69E-46 |
| MS.gene055370 | MS.gene98609 | 0.852326 | 4.97E-61 | -1.69E-46 |
| MS.gene055539 | MS.gene98609 | 0.867117 | 1.73E-65 | -1.69E-46 |
| MS.gene05553 | MS.gene98609 | 0.886927 | 2.23E-72 | -1.69E-46 |
| MS.gene05556 | MS.gene98609 | 0.866259 | 3.25E-65 | -1.69E-46 |
| MS.gene055741 | MS.gene98609 | 0.801049 | 1.08E-48 | -1.69E-46 |
| MS.gene055744 | MS.gene98609 | 0.810356 | 1.20E-50 | -1.69E-46 |
| MS.gene056233 | MS.gene98609 | 0.811482 | 6.85E-51 | -1.69E-46 |
| MS.gene056407 | MS.gene98609 | 0.809123 | 2.21E-50 | -1.69E-46 |
| MS.gene056612 | MS.gene98609 | 0.801236 | 9.90E-49 | -1.69E-46 |
| MS.gene056633 | MS.gene98609 | 0.87743 | 6.32E-69 | -1.69E-46 |
| MS.gene056659 | MS.gene98609 | 0.832426 | 9.52E-56 | -1.69E-46 |
| MS.gene056664 | MS.gene98609 | 0.838611 | 2.59E-57 | -1.69E-46 |
| MS.gene056796 | MS.gene98609 | 0.83244 | 9.44E-56 | -1.69E-46 |
| MS.gene056877 | MS.gene98609 | 0.816165 | 6.36E-52 | -1.69E-46 |
| MS.gene056899 | MS.gene98609 | -0.822152 | 2.76E-53 | -1.69E-46 |
| MS.gene056979 | MS.gene98609 | 0.810799 | 9.63E-51 | -1.69E-46 |
| MS.gene05702 | MS.gene98609 | 0.812842 | 3.46E-51 | -1.69E-46 |
| MS.gene057032 | MS.gene98609 | 0.801824 | 7.50E-49 | -1.69E-46 |
| MS.gene057124 | MS.gene98609 | 0.841169 | 5.59E-58 | -1.69E-46 |
| MS.gene057196 | MS.gene98609 | 0.815491 | 9.00E-52 | -1.69E-46 |
| MS.gene057332 | MS.gene98609 | 0.807996 | 3.85E-50 | -1.69E-46 |
| MS.gene057396 | MS.gene98609 | 0.844095 | 9.35E-59 | -1.69E-46 |
| MS.gene057440 | MS.gene98609 | -0.811555 | 6.60E-51 | -1.69E-46 |
| MS.gene057749 | MS.gene98609 | 0.819071 | 1.41E-52 | -1.69E-46 |
| MS.gene057823 | MS.gene98609 | 0.817182 | 3.77E-52 | -1.69E-46 |
| MS.gene058002 | MS.gene98609 | 0.803861 | 2.85E-49 | -1.69E-46 |
| MS.gene058007 | MS.gene98609 | 0.80115 | 1.03E-48 | -1.69E-46 |
| MS.gene05811 | MS.gene98609 | 0.804465 | 2.13E-49 | -1.69E-46 |
| MS.gene058142 | MS.gene98609 | 0.831808 | 1.35E-55 | -1.69E-46 |
| MS.gene058233 | MS.gene98609 | 0.846979 | 1.55E-59 | -1.69E-46 |
| MS.gene058276 | MS.gene98609 | 0.872434 | 3.19E-67 | -1.69E-46 |
| MS.gene058376 | MS.gene98609 | 0.821023 | 5.03E-53 | -1.69E-46 |
| MS.gene058444 | MS.gene98609 | 0.867927 | 9.54E-66 | -1.69E-46 |
| MS.gene058700 | MS.gene98609 | 0.840549 | 8.13E-58 | -1.69E-46 |
| MS.gene058746 | MS.gene98609 | 0.879367 | 1.32E-69 | -1.69E-46 |
| MS.gene059011 | MS.gene98609 | 0.836406 | 9.53E-57 | -1.69E-46 |
| MS.gene05907 | MS.gene98609 | 0.810493 | 1.12E-50 | -1.69E-46 |
| MS.gene059285 | MS.gene98609 | 0.805472 | 1.31E-49 | -1.69E-46 |
| MS.gene059420 | MS.gene98609 | 0.833127 | 6.38E-56 | -1.69E-46 |
| MS.gene059512 | MS.gene98609 | 0.838206 | 3.30E-57 | -1.69E-46 |
| MS.gene059676 | MS.gene98609 | 0.810213 | 1.29E-50 | -1.69E-46 |
| MS.gene059688 | MS.gene98609 | 0.819716 | 1.00E-52 | -1.69E-46 |
| MS.gene059692 | MS.gene98609 | 0.826958 | 2.04E-54 | -1.69E-46 |
| MS.gene059695 | MS.gene98609 | 0.829678 | 4.50E-55 | -1.69E-46 |
| MS.gene059717 | MS.gene98609 | 0.819657 | 1.04E-52 | -1.69E-46 |
| MS.gene059788 | MS.gene98609 | 0.814542 | 1.46E-51 | -1.69E-46 |
| MS.gene05984 | MS.gene98609 | 0.813917 | 2.01E-51 | -1.69E-46 |
| MS.gene059894 | MS.gene98609 | 0.82045 | 6.82E-53 | -1.69E-46 |
| MS.gene060403 | MS.gene98609 | 0.837158 | 6.13E-57 | -1.69E-46 |
| MS.gene060407 | MS.gene98609 | 0.839754 | 1.31E-57 | -1.69E-46 |
| MS.gene060717 | MS.gene98609 | 0.817394 | 3.37E-52 | -1.69E-46 |
| MS.gene061049 | MS.gene98609 | 0.823006 | 1.75E-53 | -1.69E-46 |
| MS.gene061154 | MS.gene98609 | 0.86466 | 1.04E-64 | -1.69E-46 |
| MS.gene061159 | MS.gene98609 | 0.823268 | 1.52E-53 | -1.69E-46 |
| MS.gene061231 | MS.gene98609 | 0.825992 | 3.46E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98609.t1 | MTR_4g052010 | 97.872 | 188 | 4 | 0 | 1 | 188 | 1 | 188 | 2.35e-133 | 371 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98609.t1 | AT2G27290 | 61.658 | 193 | 54 | 4 | 4 | 181 | 3 | 190 | 4.97e-62 | 191 |
Find 36 sgRNAs with CRISPR-Local
Find 99 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTTCTTGGTTACTTCTTC+AGG | 0.280999 | 4.2:-50140703 | None:intergenic |
| ACAAAGCTGCATCTCCAATT+AGG | 0.288679 | 4.2:+50142032 | MS.gene98609:CDS |
| AAGGAGTTGCTGGCAAAATA+TGG | 0.314060 | 4.2:+50141749 | MS.gene98609:CDS |
| AGCTTCAAGACCATACTTCT+TGG | 0.339383 | 4.2:-50140716 | None:intergenic |
| ATGGTCTTGAAGCTGGTCTT+TGG | 0.345812 | 4.2:+50140725 | MS.gene98609:CDS |
| ACTGTGGGTGGAAACCTAAT+TGG | 0.379765 | 4.2:-50142046 | None:intergenic |
| TGATCAAGCCAAGGAGTTGC+TGG | 0.407305 | 4.2:+50141739 | MS.gene98609:CDS |
| CAATCCAACCAGCTACGATT+GGG | 0.413841 | 4.2:-50142078 | None:intergenic |
| AAAAGTCGGTACCTTTGCTT+TGG | 0.429669 | 4.2:+50141997 | MS.gene98609:CDS |
| GAAGAAGTAACCAAGAAGTA+TGG | 0.441811 | 4.2:+50140706 | MS.gene98609:CDS |
| ATTAGATTTACGTGACTGAA+TGG | 0.446882 | 4.2:-50140608 | None:intergenic |
| CCAATCCAACCAGCTACGAT+TGG | 0.459512 | 4.2:-50142079 | None:intergenic |
| TGTTATGTATTAATCAATGC+TGG | 0.464473 | 4.2:+50141824 | MS.gene98609:CDS |
| CCAATCGTAGCTGGTTGGAT+TGG | 0.470086 | 4.2:+50142079 | MS.gene98609:CDS |
| TTCAGGTGAAGAATTCTTTG+AGG | 0.474321 | 4.2:-50140686 | None:intergenic |
| AAGAAGTATGGTCTTGAAGC+TGG | 0.499317 | 4.2:+50140718 | MS.gene98609:CDS |
| TGTTCAAACTTTGCTTCAGA+AGG | 0.506472 | 4.2:+50141853 | MS.gene98609:CDS |
| GCTCTTACCCCAATCGTAGC+TGG | 0.519207 | 4.2:+50142070 | MS.gene98609:CDS |
| GGGGAACAACAGAAATCAAA+AGG | 0.520589 | 4.2:+50141716 | MS.gene98609:CDS |
| TTACCCCAATCGTAGCTGGT+TGG | 0.540207 | 4.2:+50142074 | MS.gene98609:CDS |
| TTTCAGTTCAAAGGAAGAAG+GGG | 0.549822 | 4.2:+50141697 | MS.gene98609:CDS |
| AGAGATCAATGACAGAGTAA+TGG | 0.561630 | 4.2:-50141792 | None:intergenic |
| TCTTGAAGCTGGTCTTTGGA+AGG | 0.564484 | 4.2:+50140729 | MS.gene98609:CDS |
| AAAGAAGCACAAGAAGGTGA+TGG | 0.588002 | 4.2:-50140544 | None:intergenic |
| CTCAGAAAAGAAGCACAAGA+AGG | 0.593610 | 4.2:-50140550 | None:intergenic |
| ATCAAAAGGTGATCAAGCCA+AGG | 0.614436 | 4.2:+50141730 | MS.gene98609:CDS |
| GGGGTAAGAGCTACTGTGGG+TGG | 0.621082 | 4.2:-50142058 | None:intergenic |
| GATCAATGACAGAGTAATGG+AGG | 0.626103 | 4.2:-50141789 | None:intergenic |
| CAATGACAGAGTAATGGAGG+TGG | 0.627479 | 4.2:-50141786 | None:intergenic |
| GGAATCACTACTGATGCTAC+CGG | 0.632753 | 4.2:+50141971 | MS.gene98609:CDS |
| TGCAGCATATGCCAAAGCAA+AGG | 0.641846 | 4.2:-50142008 | None:intergenic |
| GATTGGGGTAAGAGCTACTG+TGG | 0.646696 | 4.2:-50142062 | None:intergenic |
| AATCCAACCAGCTACGATTG+GGG | 0.648062 | 4.2:-50142077 | None:intergenic |
| GAGTTGCTGGCAAAATATGG+AGG | 0.682334 | 4.2:+50141752 | MS.gene98609:CDS |
| ATTGGGGTAAGAGCTACTGT+GGG | 0.725389 | 4.2:-50142061 | None:intergenic |
| AGCTGTTAAAGAGAAAACTG+AGG | 0.740712 | 4.2:+50140651 | MS.gene98609:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATGAAGGAAAAAAAAA+AGG | - | chr4.2:50140892-50140911 | None:intergenic | 15.0% |
| !! | ATAAAACCTAAAATAAAACT+CGG | - | chr4.2:50141183-50141202 | None:intergenic | 15.0% |
| !!! | ATTTAAAGCAATAAAAATGA+AGG | - | chr4.2:50140904-50140923 | None:intergenic | 15.0% |
| !!! | GTTCTAAAAAGTATATATAA+AGG | + | chr4.2:50140958-50140977 | MS.gene98609:intron | 15.0% |
| !! | AAATAAACAAGAGAAAGAAA+TGG | - | chr4.2:50140758-50140777 | None:intergenic | 20.0% |
| !! | AATAAACAAGAGAAAGAAAT+GGG | - | chr4.2:50140757-50140776 | None:intergenic | 20.0% |
| !! | ATTATACTTAAATCCACATT+GGG | - | chr4.2:50141897-50141916 | None:intergenic | 20.0% |
| !! | TATAAAGGATATTCAAAGAT+AGG | + | chr4.2:50140973-50140992 | MS.gene98609:intron | 20.0% |
| !! | TCTGTGTAAAATGAAAATTA+TGG | + | chr4.2:50141662-50141681 | MS.gene98609:intron | 20.0% |
| !! | TTCAAACTTCTACTTTAAAT+TGG | - | chr4.2:50141357-50141376 | None:intergenic | 20.0% |
| !! | TTGGTTTAATTATGATTATG+TGG | + | chr4.2:50140777-50140796 | MS.gene98609:intron | 20.0% |
| !!! | GAAATATAAGTTGAGTTTTA+AGG | + | chr4.2:50141439-50141458 | MS.gene98609:intron | 20.0% |
| !!! | TTTCTTTCTCTTGTTTATTT+TGG | + | chr4.2:50140758-50140777 | MS.gene98609:intron | 20.0% |
| ! | AAAAGATGAATTTCTCACTT+AGG | - | chr4.2:50140829-50140848 | None:intergenic | 25.0% |
| ! | ACTAATGATTGAAAATCGTT+TGG | - | chr4.2:50141585-50141604 | None:intergenic | 25.0% |
| ! | CATTATACTTAAATCCACAT+TGG | - | chr4.2:50141898-50141917 | None:intergenic | 25.0% |
| ! | TGTTATGTATTAATCAATGC+TGG | + | chr4.2:50141824-50141843 | MS.gene98609:CDS | 25.0% |
| !! | AAGTGAGAAATTCATCTTTT+TGG | + | chr4.2:50140829-50140848 | MS.gene98609:intron | 25.0% |
| !! | AGTGAGAAATTCATCTTTTT+GGG | + | chr4.2:50140830-50140849 | MS.gene98609:intron | 25.0% |
| !!! | TAGGTTTTATTTCCATTTCT+TGG | + | chr4.2:50141193-50141212 | MS.gene98609:intron | 25.0% |
| !!! | TTGTTTCCGAGTTTTATTTT+AGG | + | chr4.2:50141174-50141193 | MS.gene98609:intron | 25.0% |
| ATTAGATTTACGTGACTGAA+TGG | - | chr4.2:50140611-50140630 | None:intergenic | 30.0% | |
| TATCTCAGCAGTAAAATTGT+TGG | - | chr4.2:50141383-50141402 | None:intergenic | 30.0% | |
| TTTCTTGTCATGTAGAACTT+GGG | + | chr4.2:50141088-50141107 | MS.gene98609:intron | 30.0% | |
| ! | ATTTTATTGCCGAAATTTGC+AGG | + | chr4.2:50140996-50141015 | MS.gene98609:intron | 30.0% |
| ! | ATTTTCAGTTCAAAGGAAGA+AGG | + | chr4.2:50141695-50141714 | MS.gene98609:CDS | 30.0% |
| ! | TGTATCTTTCCCTGATTTTA+GGG | + | chr4.2:50141226-50141245 | MS.gene98609:intron | 30.0% |
| ! | TTTGCAGATTTTCAGTTCAA+AGG | + | chr4.2:50141688-50141707 | MS.gene98609:intron | 30.0% |
| ! | TTTTATTGCCGAAATTTGCA+GGG | + | chr4.2:50140997-50141016 | MS.gene98609:intron | 30.0% |
| ! | TTTTCAGTTCAAAGGAAGAA+GGG | + | chr4.2:50141696-50141715 | MS.gene98609:CDS | 30.0% |
| ! | TTTTCTTGTCATGTAGAACT+TGG | + | chr4.2:50141087-50141106 | MS.gene98609:intron | 30.0% |
| !! | GACATGGGTTTTATACTTAT+GGG | + | chr4.2:50141536-50141555 | MS.gene98609:intron | 30.0% |
| !! | TGACATGGGTTTTATACTTA+TGG | + | chr4.2:50141535-50141554 | MS.gene98609:intron | 30.0% |
| AGAGATCAATGACAGAGTAA+TGG | - | chr4.2:50141795-50141814 | None:intergenic | 35.0% | |
| AGCTGTTAAAGAGAAAACTG+AGG | + | chr4.2:50140651-50140670 | MS.gene98609:CDS | 35.0% | |
| CAGTACAGAACATTTCTTGA+AGG | - | chr4.2:50141283-50141302 | None:intergenic | 35.0% | |
| CAGTATGCTAAACCAAGAAA+TGG | - | chr4.2:50141208-50141227 | None:intergenic | 35.0% | |
| CATTAAAACGATAACCCAAC+TGG | - | chr4.2:50141501-50141520 | None:intergenic | 35.0% | |
| CATTATGTCTGTATATCTGC+AGG | + | chr4.2:50141946-50141965 | MS.gene98609:intron | 35.0% | |
| GAAGAAGTAACCAAGAAGTA+TGG | + | chr4.2:50140706-50140725 | MS.gene98609:CDS | 35.0% | |
| GAGAGGATGAATAATGACAT+GGG | + | chr4.2:50141521-50141540 | MS.gene98609:intron | 35.0% | |
| TACTTCTTGGTTACTTCTTC+AGG | - | chr4.2:50140706-50140725 | None:intergenic | 35.0% | |
| TGTTCAAACTTTGCTTCAGA+AGG | + | chr4.2:50141853-50141872 | MS.gene98609:CDS | 35.0% | |
| TTCAGGTGAAGAATTCTTTG+AGG | - | chr4.2:50140689-50140708 | None:intergenic | 35.0% | |
| TTTACACAGAATGAAAAGCG+CGG | - | chr4.2:50141652-50141671 | None:intergenic | 35.0% | |
| TTTCAGTTCAAAGGAAGAAG+GGG | + | chr4.2:50141697-50141716 | MS.gene98609:CDS | 35.0% | |
| TTTCCTTTCCCTGCAAATTT+CGG | - | chr4.2:50141008-50141027 | None:intergenic | 35.0% | |
| ! | ATTTTGCTCCCCTAAAATCA+GGG | - | chr4.2:50141238-50141257 | None:intergenic | 35.0% |
| ! | CAGTTGGGTTATCGTTTTAA+TGG | + | chr4.2:50141499-50141518 | MS.gene98609:intron | 35.0% |
| ! | CTGTATCTTTCCCTGATTTT+AGG | + | chr4.2:50141225-50141244 | MS.gene98609:intron | 35.0% |
| ! | GTATCTTTCCCTGATTTTAG+GGG | + | chr4.2:50141227-50141246 | MS.gene98609:intron | 35.0% |
| ! | TATTTTGCTCCCCTAAAATC+AGG | - | chr4.2:50141239-50141258 | None:intergenic | 35.0% |
| AAAAGTCGGTACCTTTGCTT+TGG | + | chr4.2:50141997-50142016 | MS.gene98609:CDS | 40.0% | |
| AAATTGGCGACACAAGTAGT+CGG | - | chr4.2:50141341-50141360 | None:intergenic | 40.0% | |
| AAGGAGTTGCTGGCAAAATA+TGG | + | chr4.2:50141749-50141768 | MS.gene98609:CDS | 40.0% | |
| ACAAAGCTGCATCTCCAATT+AGG | + | chr4.2:50142032-50142051 | MS.gene98609:CDS | 40.0% | |
| AGCTTCAAGACCATACTTCT+TGG | - | chr4.2:50140719-50140738 | None:intergenic | 40.0% | |
| ATCAAAAGGTGATCAAGCCA+AGG | + | chr4.2:50141730-50141749 | MS.gene98609:CDS | 40.0% | |
| ATGTCTGTATATCTGCAGGT+AGG | + | chr4.2:50141950-50141969 | MS.gene98609:intron | 40.0% | |
| CGGAATCGATATGCAAACAT+TGG | - | chr4.2:50141321-50141340 | None:intergenic | 40.0% | |
| GATCAATGACAGAGTAATGG+AGG | - | chr4.2:50141792-50141811 | None:intergenic | 40.0% | |
| GGAGAGGATGAATAATGACA+TGG | + | chr4.2:50141520-50141539 | MS.gene98609:intron | 40.0% | |
| GGGAGCAAAATATGTGTTGT+GGG | + | chr4.2:50141247-50141266 | MS.gene98609:intron | 40.0% | |
| GGGGAACAACAGAAATCAAA+AGG | + | chr4.2:50141716-50141735 | MS.gene98609:CDS | 40.0% | |
| GGTTGAGTCGACAAAAATCA+AGG | - | chr4.2:50141480-50141499 | None:intergenic | 40.0% | |
| TGCTCATACATAACCCAATG+TGG | + | chr4.2:50141881-50141900 | MS.gene98609:intron | 40.0% | |
| ! | AAAGAAGCACAAGAAGGTGA+TGG | - | chr4.2:50140547-50140566 | None:intergenic | 40.0% |
| ! | AAGAAGTATGGTCTTGAAGC+TGG | + | chr4.2:50140718-50140737 | MS.gene98609:CDS | 40.0% |
| ! | ATATTTTGCCAGCAACTCCT+TGG | - | chr4.2:50141750-50141769 | None:intergenic | 40.0% |
| ! | CTCAGAAAAGAAGCACAAGA+AGG | - | chr4.2:50140553-50140572 | None:intergenic | 40.0% |
| ! | GAAGTGTCTCGTATAGTCTA+CGG | - | chr4.2:50141611-50141630 | None:intergenic | 40.0% |
| !! | GGGTTATCGTTTTAATGGAG+AGG | + | chr4.2:50141504-50141523 | MS.gene98609:intron | 40.0% |
| !!! | AAAGGTACCGACTTTTTCAC+CGG | - | chr4.2:50141993-50142012 | None:intergenic | 40.0% |
| !!! | TTTTGTCGACTCAACCAGTT+GGG | + | chr4.2:50141484-50141503 | MS.gene98609:intron | 40.0% |
| !!! | TTTTTGTCGACTCAACCAGT+TGG | + | chr4.2:50141483-50141502 | MS.gene98609:intron | 40.0% |
| AATCCAACCAGCTACGATTG+GGG | - | chr4.2:50142080-50142099 | None:intergenic | 45.0% | |
| ACTGTGGGTGGAAACCTAAT+TGG | - | chr4.2:50142049-50142068 | None:intergenic | 45.0% | |
| ATTGGGGTAAGAGCTACTGT+GGG | - | chr4.2:50142064-50142083 | None:intergenic | 45.0% | |
| CAATCCAACCAGCTACGATT+GGG | - | chr4.2:50142081-50142100 | None:intergenic | 45.0% | |
| GAGTTGCTGGCAAAATATGG+AGG | + | chr4.2:50141752-50141771 | MS.gene98609:CDS | 45.0% | |
| GATGCTACCGGTGAAAAAGT+CGG | + | chr4.2:50141983-50142002 | MS.gene98609:CDS | 45.0% | |
| GGAATCACTACTGATGCTAC+CGG | + | chr4.2:50141971-50141990 | MS.gene98609:CDS | 45.0% | |
| GGGGAGCAAAATATGTGTTG+TGG | + | chr4.2:50141246-50141265 | MS.gene98609:intron | 45.0% | |
| TGCAGCATATGCCAAAGCAA+AGG | - | chr4.2:50142011-50142030 | None:intergenic | 45.0% | |
| TTGCCGAAATTTGCAGGGAA+AGG | + | chr4.2:50141002-50141021 | MS.gene98609:intron | 45.0% | |
| ! | AAAAGCGCGGCTTTGACTTT+AGG | - | chr4.2:50141639-50141658 | None:intergenic | 45.0% |
| ! | AAAGCGCGGCTTTGACTTTA+GGG | - | chr4.2:50141638-50141657 | None:intergenic | 45.0% |
| ! | CAATGACAGAGTAATGGAGG+TGG | - | chr4.2:50141789-50141808 | None:intergenic | 45.0% |
| !! | ATGGTCTTGAAGCTGGTCTT+TGG | + | chr4.2:50140725-50140744 | MS.gene98609:CDS | 45.0% |
| !! | TCTTGAAGCTGGTCTTTGGA+AGG | + | chr4.2:50140729-50140748 | MS.gene98609:CDS | 45.0% |
| !! | TTATGGGAGTGTCATCGTGT+CGG | + | chr4.2:50141552-50141571 | MS.gene98609:intron | 45.0% |
| CCAATCCAACCAGCTACGAT+TGG | - | chr4.2:50142082-50142101 | None:intergenic | 50.0% | |
| CCAATCGTAGCTGGTTGGAT+TGG | + | chr4.2:50142079-50142098 | MS.gene98609:CDS | 50.0% | |
| GATTGGGGTAAGAGCTACTG+TGG | - | chr4.2:50142065-50142084 | None:intergenic | 50.0% | |
| TGATCAAGCCAAGGAGTTGC+TGG | + | chr4.2:50141739-50141758 | MS.gene98609:CDS | 50.0% | |
| TTACCCCAATCGTAGCTGGT+TGG | + | chr4.2:50142074-50142093 | MS.gene98609:CDS | 50.0% | |
| !! | GCGGCTTTGACTTTAGGGTT+AGG | - | chr4.2:50141633-50141652 | None:intergenic | 50.0% |
| GCTCTTACCCCAATCGTAGC+TGG | + | chr4.2:50142070-50142089 | MS.gene98609:CDS | 55.0% | |
| GGGGTAAGAGCTACTGTGGG+TGG | - | chr4.2:50142061-50142080 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 50140523 | 50142126 | 50140523 | ID=MS.gene98609 |
| chr4.2 | mRNA | 50140523 | 50142126 | 50140523 | ID=MS.gene98609.t1;Parent=MS.gene98609 |
| chr4.2 | exon | 50140523 | 50140750 | 50140523 | ID=MS.gene98609.t1.exon1;Parent=MS.gene98609.t1 |
| chr4.2 | CDS | 50140523 | 50140750 | 50140523 | ID=cds.MS.gene98609.t1;Parent=MS.gene98609.t1 |
| chr4.2 | exon | 50141695 | 50141874 | 50141695 | ID=MS.gene98609.t1.exon2;Parent=MS.gene98609.t1 |
| chr4.2 | CDS | 50141695 | 50141874 | 50141695 | ID=cds.MS.gene98609.t1;Parent=MS.gene98609.t1 |
| chr4.2 | exon | 50141968 | 50142126 | 50141968 | ID=MS.gene98609.t1.exon3;Parent=MS.gene98609.t1 |
| chr4.2 | CDS | 50141968 | 50142126 | 50141968 | ID=cds.MS.gene98609.t1;Parent=MS.gene98609.t1 |
| Gene Sequence |
| Protein sequence |
