Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57671.t1 | RHN64690.1 | 93.8 | 195 | 11 | 1 | 1 | 194 | 184 | 378 | 3.50E-91 | 344.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57671.t1 | Q9LU68 | 46.8 | 220 | 81 | 7 | 2 | 194 | 209 | 419 | 6.7e-30 | 132.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57671.t1 | G7JUA6 | 93.8 | 195 | 11 | 1 | 1 | 194 | 184 | 378 | 2.6e-91 | 344.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene57671.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049284 | MS.gene57671 | 0.802398 | 5.72E-49 | -1.69E-46 |
| MS.gene049491 | MS.gene57671 | 0.824477 | 7.90E-54 | -1.69E-46 |
| MS.gene049614 | MS.gene57671 | 0.807442 | 5.04E-50 | -1.69E-46 |
| MS.gene050099 | MS.gene57671 | 0.82122 | 4.53E-53 | -1.69E-46 |
| MS.gene050301 | MS.gene57671 | 0.822013 | 2.97E-53 | -1.69E-46 |
| MS.gene050529 | MS.gene57671 | 0.821053 | 4.95E-53 | -1.69E-46 |
| MS.gene050812 | MS.gene57671 | 0.853404 | 2.44E-61 | -1.69E-46 |
| MS.gene05101 | MS.gene57671 | 0.801303 | 9.59E-49 | -1.69E-46 |
| MS.gene051171 | MS.gene57671 | 0.808311 | 3.30E-50 | -1.69E-46 |
| MS.gene051240 | MS.gene57671 | 0.818952 | 1.50E-52 | -1.69E-46 |
| MS.gene051242 | MS.gene57671 | 0.845383 | 4.20E-59 | -1.69E-46 |
| MS.gene051244 | MS.gene57671 | 0.826898 | 2.11E-54 | -1.69E-46 |
| MS.gene051471 | MS.gene57671 | 0.806476 | 8.08E-50 | -1.69E-46 |
| MS.gene052078 | MS.gene57671 | 0.816509 | 5.33E-52 | -1.69E-46 |
| MS.gene052178 | MS.gene57671 | 0.812792 | 3.55E-51 | -1.69E-46 |
| MS.gene052188 | MS.gene57671 | 0.828029 | 1.13E-54 | -1.69E-46 |
| MS.gene052310 | MS.gene57671 | 0.839718 | 1.34E-57 | -1.69E-46 |
| MS.gene052340 | MS.gene57671 | 0.833302 | 5.76E-56 | -1.69E-46 |
| MS.gene052870 | MS.gene57671 | 0.80978 | 1.60E-50 | -1.69E-46 |
| MS.gene053103 | MS.gene57671 | 0.806226 | 9.12E-50 | -1.69E-46 |
| MS.gene053209 | MS.gene57671 | 0.80492 | 1.71E-49 | -1.69E-46 |
| MS.gene053557 | MS.gene57671 | 0.850235 | 1.94E-60 | -1.69E-46 |
| MS.gene053971 | MS.gene57671 | 0.803702 | 3.07E-49 | -1.69E-46 |
| MS.gene055277 | MS.gene57671 | 0.820859 | 5.49E-53 | -1.69E-46 |
| MS.gene055412 | MS.gene57671 | 0.820192 | 7.81E-53 | -1.69E-46 |
| MS.gene055422 | MS.gene57671 | 0.803943 | 2.74E-49 | -1.69E-46 |
| MS.gene055428 | MS.gene57671 | 0.803224 | 3.86E-49 | -1.69E-46 |
| MS.gene05553 | MS.gene57671 | 0.825039 | 5.82E-54 | -1.69E-46 |
| MS.gene055971 | MS.gene57671 | 0.805238 | 1.47E-49 | -1.69E-46 |
| MS.gene056612 | MS.gene57671 | 0.80243 | 5.63E-49 | -1.69E-46 |
| MS.gene056664 | MS.gene57671 | 0.830385 | 3.03E-55 | -1.69E-46 |
| MS.gene056796 | MS.gene57671 | 0.874337 | 7.31E-68 | -1.69E-46 |
| MS.gene056897 | MS.gene57671 | 0.805016 | 1.64E-49 | -1.69E-46 |
| MS.gene057032 | MS.gene57671 | 0.817149 | 3.83E-52 | -1.69E-46 |
| MS.gene058002 | MS.gene57671 | 0.824534 | 7.66E-54 | -1.69E-46 |
| MS.gene058082 | MS.gene57671 | 0.80409 | 2.55E-49 | -1.69E-46 |
| MS.gene05811 | MS.gene57671 | 0.854669 | 1.06E-61 | -1.69E-46 |
| MS.gene058233 | MS.gene57671 | 0.821647 | 3.61E-53 | -1.69E-46 |
| MS.gene058276 | MS.gene57671 | 0.874132 | 8.57E-68 | -1.69E-46 |
| MS.gene058293 | MS.gene57671 | 0.824918 | 6.22E-54 | -1.69E-46 |
| MS.gene058365 | MS.gene57671 | 0.810167 | 1.32E-50 | -1.69E-46 |
| MS.gene058743 | MS.gene57671 | 0.813623 | 2.33E-51 | -1.69E-46 |
| MS.gene058746 | MS.gene57671 | 0.804296 | 2.31E-49 | -1.69E-46 |
| MS.gene05907 | MS.gene57671 | 0.821377 | 4.17E-53 | -1.69E-46 |
| MS.gene059326 | MS.gene57671 | 0.800718 | 1.26E-48 | -1.69E-46 |
| MS.gene059518 | MS.gene57671 | 0.816969 | 4.20E-52 | -1.69E-46 |
| MS.gene059597 | MS.gene57671 | 0.82284 | 1.91E-53 | -1.69E-46 |
| MS.gene059676 | MS.gene57671 | 0.831901 | 1.28E-55 | -1.69E-46 |
| MS.gene059688 | MS.gene57671 | 0.805938 | 1.05E-49 | -1.69E-46 |
| MS.gene059692 | MS.gene57671 | 0.830703 | 2.53E-55 | -1.69E-46 |
| MS.gene059695 | MS.gene57671 | 0.82888 | 7.03E-55 | -1.69E-46 |
| MS.gene05984 | MS.gene57671 | 0.846464 | 2.14E-59 | -1.69E-46 |
| MS.gene059894 | MS.gene57671 | 0.8625 | 4.85E-64 | -1.69E-46 |
| MS.gene059960 | MS.gene57671 | 0.801667 | 8.08E-49 | -1.69E-46 |
| MS.gene060407 | MS.gene57671 | 0.851015 | 1.17E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57671.t1 | MTR_4g127420 | 98.462 | 195 | 2 | 1 | 1 | 194 | 184 | 378 | 1.52e-137 | 389 |
| MS.gene57671.t1 | MTR_5g072780 | 47.009 | 117 | 57 | 3 | 78 | 194 | 99 | 210 | 1.51e-22 | 90.9 |
| MS.gene57671.t1 | MTR_7g032240 | 34.783 | 161 | 67 | 5 | 69 | 194 | 188 | 345 | 2.06e-18 | 82.0 |
| MS.gene57671.t1 | MTR_1g110870 | 44.444 | 108 | 48 | 4 | 99 | 194 | 311 | 418 | 3.79e-17 | 79.0 |
| MS.gene57671.t1 | MTR_8g104190 | 42.727 | 110 | 35 | 3 | 105 | 194 | 293 | 394 | 9.98e-16 | 74.7 |
| MS.gene57671.t1 | MTR_2g038010 | 40.541 | 111 | 48 | 4 | 16 | 124 | 217 | 311 | 5.00e-13 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57671.t1 | AT5G57180 | 49.741 | 193 | 65 | 7 | 25 | 194 | 236 | 419 | 4.25e-44 | 152 |
| MS.gene57671.t1 | AT5G57180 | 49.741 | 193 | 65 | 7 | 25 | 194 | 236 | 419 | 9.00e-44 | 151 |
| MS.gene57671.t1 | AT4G25990 | 47.423 | 194 | 69 | 7 | 27 | 194 | 191 | 377 | 7.67e-40 | 139 |
| MS.gene57671.t1 | AT4G25990 | 47.423 | 194 | 69 | 7 | 27 | 194 | 191 | 377 | 1.37e-39 | 139 |
| MS.gene57671.t1 | AT4G25990 | 47.423 | 194 | 69 | 7 | 27 | 194 | 191 | 377 | 2.26e-39 | 139 |
| MS.gene57671.t1 | AT5G14370 | 45.370 | 108 | 38 | 4 | 103 | 194 | 228 | 330 | 2.39e-18 | 81.6 |
| MS.gene57671.t1 | AT1G25440 | 36.242 | 149 | 78 | 2 | 60 | 194 | 252 | 397 | 5.95e-18 | 81.3 |
| MS.gene57671.t1 | AT1G07050 | 50.000 | 92 | 39 | 2 | 103 | 194 | 103 | 187 | 2.24e-17 | 76.6 |
| MS.gene57671.t1 | AT1G07050 | 50.000 | 92 | 39 | 2 | 103 | 194 | 103 | 187 | 2.71e-17 | 76.6 |
| MS.gene57671.t1 | AT1G73870 | 45.370 | 108 | 45 | 3 | 101 | 194 | 274 | 381 | 1.99e-16 | 76.6 |
| MS.gene57671.t1 | AT1G68520 | 39.474 | 114 | 47 | 2 | 99 | 194 | 284 | 393 | 2.10e-15 | 73.9 |
| MS.gene57671.t1 | AT5G57180 | 37.500 | 144 | 62 | 6 | 25 | 145 | 236 | 374 | 1.50e-14 | 71.2 |
| MS.gene57671.t1 | AT5G57180 | 37.500 | 144 | 62 | 6 | 25 | 145 | 236 | 374 | 1.50e-14 | 71.2 |
| MS.gene57671.t1 | AT1G49130 | 34.307 | 137 | 67 | 4 | 65 | 194 | 187 | 307 | 1.65e-12 | 65.1 |
| MS.gene57671.t1 | AT1G49130 | 34.307 | 137 | 67 | 4 | 65 | 194 | 194 | 314 | 1.92e-12 | 65.1 |
Find 51 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCACCGACACTGCATATTT+TGG | 0.094471 | 8.1:+5436293 | None:intergenic |
| ATTGATCATACCTTCATTCT+TGG | 0.253571 | 8.1:+5434310 | None:intergenic |
| TCTCATCCATGGATTGGTTT+TGG | 0.279149 | 8.1:-5436429 | MS.gene57671:CDS |
| TGTCACAAATAGATTTGTTA+TGG | 0.306145 | 8.1:-5434456 | MS.gene57671:CDS |
| ACATACATTAACATCGTTTC+CGG | 0.311561 | 8.1:+5436071 | None:intergenic |
| GCCATGTTGATGAAGGAAAT+TGG | 0.353307 | 8.1:-5436353 | MS.gene57671:CDS |
| AATTGAATTACGACGGTGTT+CGG | 0.364551 | 8.1:-5436152 | MS.gene57671:CDS |
| GGGAAATTCGACTTCCGGTT+AGG | 0.378755 | 8.1:-5436405 | MS.gene57671:CDS |
| AGGAAATTGGTGGAATTTCC+CGG | 0.382166 | 8.1:-5436340 | MS.gene57671:CDS |
| AGAAAATCAGATATCAAGTT+AGG | 0.387014 | 8.1:-5434354 | MS.gene57671:CDS |
| GTCACAAATAGATTTGTTAT+GGG | 0.395534 | 8.1:-5434455 | MS.gene57671:CDS |
| TCTTCTTCTCATCCATGGAT+TGG | 0.411520 | 8.1:-5436435 | MS.gene57671:CDS |
| GAATGCAGAATTGAAAGAAA+TGG | 0.436941 | 8.1:-5436208 | MS.gene57671:CDS |
| TTGGCGGGAAATTCGACTTC+CGG | 0.439230 | 8.1:-5436410 | MS.gene57671:CDS |
| TTTCCGGAAGCATCGGAGAC+AGG | 0.440046 | 8.1:+5436087 | None:intergenic |
| TTGTTATGGGAGAATGGAGG+AGG | 0.440896 | 8.1:-5434442 | MS.gene57671:CDS |
| CACCTCTCTGTAATCCTAAC+CGG | 0.443822 | 8.1:+5436391 | None:intergenic |
| ATAGATTTGTTATGGGAGAA+TGG | 0.448843 | 8.1:-5434448 | MS.gene57671:CDS |
| CATCGGCGAACGGCGTTCCT+CGG | 0.459344 | 8.1:+5436115 | None:intergenic |
| TGGGAGAATGGAGGAGGAAG+TGG | 0.459617 | 8.1:-5434436 | MS.gene57671:CDS |
| AGCCCTGTCTCCGATGCTTC+CGG | 0.466072 | 8.1:-5436090 | MS.gene57671:CDS |
| ACGTCTCTTCTTCTCATCCA+TGG | 0.467379 | 8.1:-5436440 | MS.gene57671:CDS |
| ACGACGGTGTTCGGAAAGCT+TGG | 0.468820 | 8.1:-5436143 | MS.gene57671:CDS |
| CGGTGGTAAGACGGCGGCGC+CGG | 0.496178 | 8.1:-5436277 | MS.gene57671:CDS |
| AACATCGTTTCCGGAAGCAT+CGG | 0.505047 | 8.1:+5436080 | None:intergenic |
| ATGCAGTGTCGGTGGTAAGA+CGG | 0.515154 | 8.1:-5436286 | MS.gene57671:CDS |
| ACCAATTTCCTTCATCAACA+TGG | 0.530695 | 8.1:+5436352 | None:intergenic |
| GAATCGCCAAAGTTGAAAAG+TGG | 0.536005 | 8.1:-5436186 | MS.gene57671:CDS |
| AAAGAAGAAGGTTGTTGCGG+TGG | 0.538258 | 8.1:-5436238 | MS.gene57671:CDS |
| GCTCTTCGCCATGTTGATGA+AGG | 0.541149 | 8.1:-5436360 | MS.gene57671:CDS |
| ATCGGAGACAGGGCTGTCAT+CGG | 0.545065 | 8.1:+5436098 | None:intergenic |
| TTCCCGCCAAAACCAATCCA+TGG | 0.558777 | 8.1:+5436423 | None:intergenic |
| CGGTTAGGATTACAGAGAGG+TGG | 0.569382 | 8.1:-5436390 | MS.gene57671:CDS |
| TTCTTTGTAACGCAGCACGC+TGG | 0.571082 | 8.1:+5434402 | None:intergenic |
| TTCCGGAAGCATCGGAGACA+GGG | 0.571094 | 8.1:+5436088 | None:intergenic |
| AGATCGACGGCCAAGAATGA+AGG | 0.572545 | 8.1:-5434320 | None:intergenic |
| AATCAGATATCAAGTTAGGA+AGG | 0.579412 | 8.1:-5434350 | MS.gene57671:CDS |
| TAAGACGGCGGCGCCGGTGA+CGG | 0.581889 | 8.1:-5436271 | MS.gene57671:CDS |
| ACAGGGCTGTCATCGGCGAA+CGG | 0.603353 | 8.1:+5436105 | None:intergenic |
| CCCAAAATATGCAGTGTCGG+TGG | 0.613838 | 8.1:-5436294 | MS.gene57671:CDS |
| CATCATGGGAGGTAGAATTG+AGG | 0.620329 | 8.1:-5436475 | None:intergenic |
| TCGCCCAAAATATGCAGTGT+CGG | 0.623873 | 8.1:-5436297 | MS.gene57671:CDS |
| GATTTGTTATGGGAGAATGG+AGG | 0.628311 | 8.1:-5434445 | MS.gene57671:CDS |
| GGAAGGTCAATGCAGATCGA+CGG | 0.632746 | 8.1:-5434333 | MS.gene57671:CDS |
| CGGAAAGCTTGGTCTGACCG+AGG | 0.657705 | 8.1:-5436132 | MS.gene57671:CDS |
| TTGTTGAAATTGAATTACGA+CGG | 0.684346 | 8.1:-5436159 | MS.gene57671:CDS |
| CAGTGTCGGTGGTAAGACGG+CGG | 0.687348 | 8.1:-5436283 | MS.gene57671:CDS |
| GGAATTGATAGCATCATGGG+AGG | 0.697923 | 8.1:-5436486 | None:intergenic |
| ATGTTGATGAAGGAAATTGG+TGG | 0.707203 | 8.1:-5436350 | MS.gene57671:CDS |
| TTCCGGTTAGGATTACAGAG+AGG | 0.750478 | 8.1:-5436393 | MS.gene57671:CDS |
| AAATTGGTGGAATTTCCCGG+CGG | 0.816024 | 8.1:-5436337 | MS.gene57671:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATAAAAGAAAACAATT+GGG | + | chr8.1:5435128-5435147 | None:intergenic | 10.0% |
| !! | TAAAATAAAAGAAAGTAATT+GGG | - | chr8.1:5435671-5435690 | MS.gene57671:intron | 10.0% |
| !! | TTAAAATAAAAGAAAACAAT+TGG | + | chr8.1:5435129-5435148 | None:intergenic | 10.0% |
| !! | TTAAAATAAAAGAAAGTAAT+TGG | - | chr8.1:5435670-5435689 | MS.gene57671:intron | 10.0% |
| !! | AAAGTAAAGTAAAAAATGAA+TGG | + | chr8.1:5435852-5435871 | None:intergenic | 15.0% |
| !! | AAGTAAAGTAAAAAATGAAT+GGG | + | chr8.1:5435851-5435870 | None:intergenic | 15.0% |
| !! | ATTCTCTTACAATATTTAAA+TGG | - | chr8.1:5435914-5435933 | MS.gene57671:intron | 15.0% |
| !! | TTCTCTTACAATATTTAAAT+GGG | - | chr8.1:5435915-5435934 | MS.gene57671:intron | 15.0% |
| !!! | TTTTTTTGTGAAATAGAAAA+AGG | + | chr8.1:5435887-5435906 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAAAGAGAGAGA+GGG | + | chr8.1:5434933-5434952 | None:intergenic | 20.0% |
| !! | AGTAAAGTAAAAAATGAATG+GGG | + | chr8.1:5435850-5435869 | None:intergenic | 20.0% |
| !! | AGTAGCATATGTTATAATTT+AGG | - | chr8.1:5436179-5436198 | MS.gene57671:CDS | 20.0% |
| !! | ATTTAATAGATAGTGAATGA+GGG | - | chr8.1:5436258-5436277 | MS.gene57671:CDS | 20.0% |
| !! | TATTTAATAGATAGTGAATG+AGG | - | chr8.1:5436257-5436276 | MS.gene57671:CDS | 20.0% |
| !!! | AAATTGTTGATTGATATTGT+GGG | - | chr8.1:5436300-5436319 | MS.gene57671:CDS | 20.0% |
| !!! | AAGTAAAAAGATATTTGTTG+TGG | - | chr8.1:5435968-5435987 | MS.gene57671:intron | 20.0% |
| !!! | AATTAGGTAAATTTTGTCTT+GGG | - | chr8.1:5436118-5436137 | MS.gene57671:CDS | 20.0% |
| !!! | ATGACTGTTTTTTTTTTTGT+TGG | + | chr8.1:5435769-5435788 | None:intergenic | 20.0% |
| !!! | ATTTAAAATCACAGATTGAA+GGG | + | chr8.1:5435250-5435269 | None:intergenic | 20.0% |
| !!! | TATTTAAAATCACAGATTGA+AGG | + | chr8.1:5435251-5435270 | None:intergenic | 20.0% |
| !!! | TTAAGATTTTGTCTTGAATT+AGG | - | chr8.1:5436102-5436121 | MS.gene57671:CDS | 20.0% |
| !!! | TTTTGATTTTACTCCATTAA+AGG | + | chr8.1:5435224-5435243 | None:intergenic | 20.0% |
| ! | AATAACAGATACACCTTTAA+TGG | - | chr8.1:5435208-5435227 | MS.gene57671:intron | 25.0% |
| ! | AGAAAATCAGATATCAAGTT+AGG | - | chr8.1:5436438-5436457 | MS.gene57671:CDS | 25.0% |
| ! | GAAAAAAAAAAAAGAGAGAG+AGG | + | chr8.1:5434934-5434953 | None:intergenic | 25.0% |
| ! | TCAAAATAAATCTGAACCAT+TGG | - | chr8.1:5435052-5435071 | MS.gene57671:intron | 25.0% |
| ! | TTGTTGAAATTGAATTACGA+CGG | - | chr8.1:5434633-5434652 | MS.gene57671:intron | 25.0% |
| !! | ATTTTTAATCACGTGGAATA+TGG | - | chr8.1:5434984-5435003 | MS.gene57671:intron | 25.0% |
| !! | CAAATTGTTGATTGATATTG+TGG | - | chr8.1:5436299-5436318 | MS.gene57671:CDS | 25.0% |
| !! | GAATGTGTTACTCAATAAAA+AGG | - | chr8.1:5435942-5435961 | MS.gene57671:intron | 25.0% |
| !! | GAATTAGGTAAATTTTGTCT+TGG | - | chr8.1:5436117-5436136 | MS.gene57671:CDS | 25.0% |
| !! | TTTTTAATCACGTGGAATAT+GGG | - | chr8.1:5434985-5435004 | MS.gene57671:intron | 25.0% |
| !!! | CTTTAAAATCACAGATTGAA+AGG | + | chr8.1:5435275-5435294 | None:intergenic | 25.0% |
| !!! | GATTTTAAAGCAAATTTCGA+TGG | - | chr8.1:5435285-5435304 | MS.gene57671:intron | 25.0% |
| !!! | GTCACAAATAGATTTGTTAT+GGG | - | chr8.1:5436337-5436356 | MS.gene57671:CDS | 25.0% |
| !!! | GTTTGAATACTATTGATTCA+GGG | - | chr8.1:5435524-5435543 | MS.gene57671:intron | 25.0% |
| !!! | TAAGCATTTTGATCTAAAGT+TGG | - | chr8.1:5435710-5435729 | MS.gene57671:intron | 25.0% |
| !!! | TAAGCATTTTGATCTAAAGT+TGG | + | chr8.1:5435729-5435710 | None:intergenic | 25.0% |
| !!! | TGTCACAAATAGATTTGTTA+TGG | - | chr8.1:5436336-5436355 | MS.gene57671:CDS | 25.0% |
| !!! | TGTTTGAATACTATTGATTC+AGG | - | chr8.1:5435523-5435542 | MS.gene57671:intron | 25.0% |
| !!! | TTCTTTTTTAAAGATTACCC+AGG | - | chr8.1:5434957-5434976 | MS.gene57671:intron | 25.0% |
| AAATCTGAACCATTGGATAA+GGG | - | chr8.1:5435059-5435078 | MS.gene57671:intron | 30.0% | |
| AAATGTCGGAAAGGTAATTA+AGG | + | chr8.1:5434803-5434822 | None:intergenic | 30.0% | |
| AAGCAAATTTCGATGGTTAT+AGG | - | chr8.1:5435292-5435311 | MS.gene57671:intron | 30.0% | |
| AATCAGATATCAAGTTAGGA+AGG | - | chr8.1:5436442-5436461 | MS.gene57671:CDS | 30.0% | |
| AATTGACATATGAGGGATTA+AGG | + | chr8.1:5434832-5434851 | None:intergenic | 30.0% | |
| ACAAGTACGAAAACAAAAAC+AGG | + | chr8.1:5434775-5434794 | None:intergenic | 30.0% | |
| ACATACATTAACATCGTTTC+CGG | + | chr8.1:5434724-5434743 | None:intergenic | 30.0% | |
| AGCTTCTTGTTGAATTGAAA+CGG | + | chr8.1:5435417-5435436 | None:intergenic | 30.0% | |
| CTTTGTGTAGTTTCAATAAC+CGG | - | chr8.1:5436065-5436084 | MS.gene57671:intron | 30.0% | |
| GAATGCAGAATTGAAAGAAA+TGG | - | chr8.1:5434584-5434603 | MS.gene57671:intron | 30.0% | |
| GCAAAATAAATCTGAACCAT+TGG | + | chr8.1:5435747-5435766 | None:intergenic | 30.0% | |
| GTTGTTCAATTGACATATGA+GGG | + | chr8.1:5434839-5434858 | None:intergenic | 30.0% | |
| TAAATCTGAACCATTGGATA+AGG | - | chr8.1:5435058-5435077 | MS.gene57671:intron | 30.0% | |
| TATTGCAGTAAAGAAAGAGA+AGG | + | chr8.1:5435192-5435211 | None:intergenic | 30.0% | |
| TGTTGTTCAATTGACATATG+AGG | + | chr8.1:5434840-5434859 | None:intergenic | 30.0% | |
| TTGTCTTGGGTCAAAATTAT+GGG | - | chr8.1:5436131-5436150 | MS.gene57671:CDS | 30.0% | |
| TTTGTCTTGGGTCAAAATTA+TGG | - | chr8.1:5436130-5436149 | MS.gene57671:CDS | 30.0% | |
| ! | AACAGTGTTGGAAAATCAAA+GGG | - | chr8.1:5435579-5435598 | MS.gene57671:intron | 30.0% |
| ! | ATCTGATTTTCTTAGAGATG+AGG | + | chr8.1:5436430-5436449 | None:intergenic | 30.0% |
| ! | ATTTTCCAACACTGTTATGT+TGG | + | chr8.1:5435575-5435594 | None:intergenic | 30.0% |
| ! | GTTGGTTTACATTTATCCAA+TGG | - | chr8.1:5435728-5435747 | MS.gene57671:intron | 30.0% |
| ! | TAACAGTGTTGGAAAATCAA+AGG | - | chr8.1:5435578-5435597 | MS.gene57671:intron | 30.0% |
| !! | AACAATCCACTTTTCAACTT+TGG | + | chr8.1:5434615-5434634 | None:intergenic | 30.0% |
| !! | ATAGATTTGTTATGGGAGAA+TGG | - | chr8.1:5436344-5436363 | MS.gene57671:CDS | 30.0% |
| !! | GATTAAGGTACTGAAAATGT+CGG | + | chr8.1:5434817-5434836 | None:intergenic | 30.0% |
| !!! | AACAGGTGTTGAATTTTGAT+TGG | + | chr8.1:5434758-5434777 | None:intergenic | 30.0% |
| !!! | ACAGGTGTTGAATTTTGATT+GGG | + | chr8.1:5434757-5434776 | None:intergenic | 30.0% |
| AATTGAATTACGACGGTGTT+CGG | - | chr8.1:5434640-5434659 | MS.gene57671:intron | 35.0% | |
| ACCAATTTCCTTCATCAACA+TGG | + | chr8.1:5434443-5434462 | None:intergenic | 35.0% | |
| ATCAAAGGGAAAGAATGAAG+TGG | - | chr8.1:5435593-5435612 | MS.gene57671:intron | 35.0% | |
| CTTAACATGAACATACAGTC+CGG | + | chr8.1:5436087-5436106 | None:intergenic | 35.0% | |
| GAAAAAGAAGAAGGTTGTTG+CGG | - | chr8.1:5434551-5434570 | MS.gene57671:intron | 35.0% | |
| GGAGAAGAAGAAAAAGAAGA+AGG | - | chr8.1:5434542-5434561 | MS.gene57671:intron | 35.0% | |
| GTAAAGAAAGAGAAGGAAGA+TGG | + | chr8.1:5435185-5435204 | None:intergenic | 35.0% | |
| TTCTTGTTGAATTGAAACGG+TGG | + | chr8.1:5435414-5435433 | None:intergenic | 35.0% | |
| ! | ATGTTGATGAAGGAAATTGG+TGG | - | chr8.1:5434442-5434461 | MS.gene57671:CDS | 35.0% |
| ! | ATTTTAAGCATATCAACCGC+CGG | + | chr8.1:5434474-5434493 | None:intergenic | 35.0% |
| AAAATGAATGGGGCATGACA+TGG | + | chr8.1:5435840-5435859 | None:intergenic | 40.0% | |
| AAATGAATGGGGCATGACAT+GGG | + | chr8.1:5435839-5435858 | None:intergenic | 40.0% | |
| AACAAGATCAGAGGTTACTG+GGG | - | chr8.1:5435623-5435642 | MS.gene57671:intron | 40.0% | |
| AAGAGAAGGAAGATGGAAGA+AGG | + | chr8.1:5435178-5435197 | None:intergenic | 40.0% | |
| ACAACAAGATCAGAGGTTAC+TGG | - | chr8.1:5435621-5435640 | MS.gene57671:intron | 40.0% | |
| ACGTGATTAAAAATCTCGCC+TGG | + | chr8.1:5434978-5434997 | None:intergenic | 40.0% | |
| AGAGAAGGAAGATGGAAGAA+GGG | + | chr8.1:5435177-5435196 | None:intergenic | 40.0% | |
| AGGAAATTGGTGGAATTTCC+CGG | - | chr8.1:5434452-5434471 | MS.gene57671:CDS | 40.0% | |
| CAACAAGATCAGAGGTTACT+GGG | - | chr8.1:5435622-5435641 | MS.gene57671:intron | 40.0% | |
| CGTGATTAAAAATCTCGCCT+GGG | + | chr8.1:5434977-5434996 | None:intergenic | 40.0% | |
| GAATCGCCAAAGTTGAAAAG+TGG | - | chr8.1:5434606-5434625 | MS.gene57671:intron | 40.0% | |
| TCTTCTTCTCATCCATGGAT+TGG | - | chr8.1:5434357-5434376 | MS.gene57671:CDS | 40.0% | |
| TGATTGATATTGTGGGAGAC+AGG | - | chr8.1:5436307-5436326 | MS.gene57671:CDS | 40.0% | |
| TTCCAACACTGTTATGTTGG+AGG | + | chr8.1:5435572-5435591 | None:intergenic | 40.0% | |
| ! | AGGCGAGATTTTTAATCACG+TGG | - | chr8.1:5434977-5434996 | MS.gene57671:intron | 40.0% |
| ! | GCCATGTTGATGAAGGAAAT+TGG | - | chr8.1:5434439-5434458 | MS.gene57671:CDS | 40.0% |
| ! | GTTGGTTTACCCTTATCCAA+TGG | + | chr8.1:5435071-5435090 | None:intergenic | 40.0% |
| ! | TTTTAAGCATATCAACCGCC+GGG | + | chr8.1:5434473-5434492 | None:intergenic | 40.0% |
| ! | TTTTTCTTCTTCTCCGTCAC+CGG | + | chr8.1:5434537-5434556 | None:intergenic | 40.0% |
| !! | AGGTACTGAAAATGTCGGAA+AGG | + | chr8.1:5434812-5434831 | None:intergenic | 40.0% |
| !! | GATTTGTTATGGGAGAATGG+AGG | - | chr8.1:5436347-5436366 | MS.gene57671:CDS | 40.0% |
| !!! | TCTCATCCATGGATTGGTTT+TGG | - | chr8.1:5434363-5434382 | MS.gene57671:CDS | 40.0% |
| AAAGAAGAAGGTTGTTGCGG+TGG | - | chr8.1:5434554-5434573 | MS.gene57671:intron | 45.0% | |
| AAATTGGTGGAATTTCCCGG+CGG | - | chr8.1:5434455-5434474 | MS.gene57671:CDS | 45.0% | |
| ACAGTCATGTCTCCTACCAT+AGG | - | chr8.1:5435781-5435800 | MS.gene57671:intron | 45.0% | |
| ACGTCTCTTCTTCTCATCCA+TGG | - | chr8.1:5434352-5434371 | MS.gene57671:CDS | 45.0% | |
| AGACCTGAATAGGTCACCTA+TGG | + | chr8.1:5435800-5435819 | None:intergenic | 45.0% | |
| CACCTCCAACATAACAGTGT+TGG | - | chr8.1:5435567-5435586 | MS.gene57671:intron | 45.0% | |
| CACCTCTCTGTAATCCTAAC+CGG | + | chr8.1:5434404-5434423 | None:intergenic | 45.0% | |
| CTACCATAGGTGACCTATTC+AGG | - | chr8.1:5435794-5435813 | MS.gene57671:intron | 45.0% | |
| CTGAATAGGTCACCTATGGT+AGG | + | chr8.1:5435796-5435815 | None:intergenic | 45.0% | |
| GAGAAGGAAGATGGAAGAAG+GGG | + | chr8.1:5435176-5435195 | None:intergenic | 45.0% | |
| TCGCCCAAAATATGCAGTGT+CGG | - | chr8.1:5434495-5434514 | MS.gene57671:intron | 45.0% | |
| TTCCGGTTAGGATTACAGAG+AGG | - | chr8.1:5434399-5434418 | MS.gene57671:CDS | 45.0% | |
| TTGTTATGGGAGAATGGAGG+AGG | - | chr8.1:5436350-5436369 | MS.gene57671:CDS | 45.0% | |
| ! | AACATCGTTTCCGGAAGCAT+CGG | + | chr8.1:5434715-5434734 | None:intergenic | 45.0% |
| ! | ACCACCGACACTGCATATTT+TGG | + | chr8.1:5434502-5434521 | None:intergenic | 45.0% |
| ! | CCACCGACACTGCATATTTT+GGG | + | chr8.1:5434501-5434520 | None:intergenic | 45.0% |
| !!! | ATCCATGGATTGGTTTTGGC+GGG | - | chr8.1:5434367-5434386 | MS.gene57671:CDS | 45.0% |
| !!! | CATCCATGGATTGGTTTTGG+CGG | - | chr8.1:5434366-5434385 | MS.gene57671:CDS | 45.0% |
| !! | AAAAAAAAAAGAAAAATTAA+TGG | - | chr8.1:5435362-5435381 | MS.gene57671:intron | 5.0% |
| !! | ATTATTATTTAAGTATAAAA+AGG | - | chr8.1:5435480-5435499 | MS.gene57671:intron | 5.0% |
| CGGTTAGGATTACAGAGAGG+TGG | - | chr8.1:5434402-5434421 | MS.gene57671:CDS | 50.0% | |
| GATATTGTGGGAGACAGGCA+CGG | - | chr8.1:5436312-5436331 | MS.gene57671:CDS | 50.0% | |
| GGAAGGTCAATGCAGATCGA+CGG | - | chr8.1:5436459-5436478 | MS.gene57671:CDS | 50.0% | |
| GGCAGCAACAACAAGATCAG+AGG | - | chr8.1:5435614-5435633 | MS.gene57671:intron | 50.0% | |
| GGGAAATTCGACTTCCGGTT+AGG | - | chr8.1:5434387-5434406 | MS.gene57671:CDS | 50.0% | |
| TTCCCGCCAAAACCAATCCA+TGG | + | chr8.1:5434372-5434391 | None:intergenic | 50.0% | |
| TTCTTTGTAACGCAGCACGC+TGG | + | chr8.1:5436393-5436412 | None:intergenic | 50.0% | |
| TTGGCGGGAAATTCGACTTC+CGG | - | chr8.1:5434382-5434401 | MS.gene57671:CDS | 50.0% | |
| ! | CCCAAAATATGCAGTGTCGG+TGG | - | chr8.1:5434498-5434517 | MS.gene57671:intron | 50.0% |
| ! | GCTCTTCGCCATGTTGATGA+AGG | - | chr8.1:5434432-5434451 | MS.gene57671:CDS | 50.0% |
| !! | ATGCAGTGTCGGTGGTAAGA+CGG | - | chr8.1:5434506-5434525 | MS.gene57671:intron | 50.0% |
| ACGACGGTGTTCGGAAAGCT+TGG | - | chr8.1:5434649-5434668 | MS.gene57671:intron | 55.0% | |
| AGAGGTTACTGGGGTGAGAG+AGG | - | chr8.1:5435632-5435651 | MS.gene57671:intron | 55.0% | |
| ATCGGAGACAGGGCTGTCAT+CGG | + | chr8.1:5434697-5434716 | None:intergenic | 55.0% | |
| CATGACATGGGCTCTGTCTC+CGG | + | chr8.1:5435827-5435846 | None:intergenic | 55.0% | |
| GACCTATTCAGGTCTCCCAC+CGG | - | chr8.1:5435805-5435824 | MS.gene57671:intron | 55.0% | |
| TGGGAGAATGGAGGAGGAAG+TGG | - | chr8.1:5436356-5436375 | MS.gene57671:CDS | 55.0% | |
| !! | TTCCGGAAGCATCGGAGACA+GGG | + | chr8.1:5434707-5434726 | None:intergenic | 55.0% |
| !! | TTTCCGGAAGCATCGGAGAC+AGG | + | chr8.1:5434708-5434727 | None:intergenic | 55.0% |
| ACAGGGCTGTCATCGGCGAA+CGG | + | chr8.1:5434690-5434709 | None:intergenic | 60.0% | |
| ACATGGGCTCTGTCTCCGGT+GGG | + | chr8.1:5435823-5435842 | None:intergenic | 60.0% | |
| AGCCCTGTCTCCGATGCTTC+CGG | - | chr8.1:5434702-5434721 | MS.gene57671:intron | 60.0% | |
| AGGGGCGAGAGAGGAAAGAG+AGG | + | chr8.1:5435158-5435177 | None:intergenic | 60.0% | |
| CGGAAAGCTTGGTCTGACCG+AGG | - | chr8.1:5434660-5434679 | MS.gene57671:intron | 60.0% | |
| CTCCGGTGGGAGACCTGAAT+AGG | + | chr8.1:5435810-5435829 | None:intergenic | 60.0% | |
| GATGGAAGAAGGGGCGAGAG+AGG | + | chr8.1:5435167-5435186 | None:intergenic | 60.0% | |
| !! | CAGTGTCGGTGGTAAGACGG+CGG | - | chr8.1:5434509-5434528 | MS.gene57671:intron | 60.0% |
| CATCGGCGAACGGCGTTCCT+CGG | + | chr8.1:5434680-5434699 | None:intergenic | 65.0% | |
| GACATGGGCTCTGTCTCCGG+TGG | + | chr8.1:5435824-5435843 | None:intergenic | 65.0% | |
| !! | TAAGACGGCGGCGCCGGTGA+CGG | - | chr8.1:5434521-5434540 | MS.gene57671:intron | 70.0% |
| CGGTGGTAAGACGGCGGCGC+CGG | - | chr8.1:5434515-5434534 | MS.gene57671:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 5434321 | 5436493 | 5434321 | ID=MS.gene57671 |
| chr8.1 | mRNA | 5434321 | 5436493 | 5434321 | ID=MS.gene57671.t1;Parent=MS.gene57671 |
| chr8.1 | exon | 5436077 | 5436493 | 5436077 | ID=MS.gene57671.t1.exon1;Parent=MS.gene57671.t1 |
| chr8.1 | CDS | 5436077 | 5436493 | 5436077 | ID=cds.MS.gene57671.t1;Parent=MS.gene57671.t1 |
| chr8.1 | exon | 5434321 | 5434485 | 5434321 | ID=MS.gene57671.t1.exon2;Parent=MS.gene57671.t1 |
| chr8.1 | CDS | 5434321 | 5434485 | 5434321 | ID=cds.MS.gene57671.t1;Parent=MS.gene57671.t1 |
| Gene Sequence |
| Protein sequence |
