Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71692.t1 | XP_013470075.1 | 97.2 | 145 | 4 | 0 | 1 | 145 | 1 | 145 | 1.20E-67 | 265.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71692.t1 | Q9M7I9 | 55.5 | 146 | 64 | 1 | 1 | 145 | 1 | 146 | 1.1e-32 | 141.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71692.t1 | A0A072VRP5 | 97.2 | 145 | 4 | 0 | 1 | 145 | 1 | 145 | 8.6e-68 | 265.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene71692 | 0.803416 | 3.52E-49 | -1.69E-46 |
| MS.gene049171 | MS.gene71692 | 0.803409 | 3.54E-49 | -1.69E-46 |
| MS.gene049222 | MS.gene71692 | 0.81508 | 1.11E-51 | -1.69E-46 |
| MS.gene049427 | MS.gene71692 | 0.808013 | 3.81E-50 | -1.69E-46 |
| MS.gene049609 | MS.gene71692 | 0.800644 | 1.31E-48 | -1.69E-46 |
| MS.gene049805 | MS.gene71692 | 0.807853 | 4.13E-50 | -1.69E-46 |
| MS.gene050076 | MS.gene71692 | 0.800741 | 1.25E-48 | -1.69E-46 |
| MS.gene050404 | MS.gene71692 | 0.829176 | 5.96E-55 | -1.69E-46 |
| MS.gene050406 | MS.gene71692 | 0.823814 | 1.13E-53 | -1.69E-46 |
| MS.gene050529 | MS.gene71692 | 0.850414 | 1.72E-60 | -1.69E-46 |
| MS.gene050538 | MS.gene71692 | 0.827766 | 1.31E-54 | -1.69E-46 |
| MS.gene050812 | MS.gene71692 | 0.838724 | 2.43E-57 | -1.69E-46 |
| MS.gene05105 | MS.gene71692 | 0.805486 | 1.30E-49 | -1.69E-46 |
| MS.gene051228 | MS.gene71692 | 0.842627 | 2.30E-58 | -1.69E-46 |
| MS.gene051617 | MS.gene71692 | 0.851826 | 6.89E-61 | -1.69E-46 |
| MS.gene051666 | MS.gene71692 | 0.872956 | 2.13E-67 | -1.69E-46 |
| MS.gene052050 | MS.gene71692 | -0.811722 | 6.07E-51 | -1.69E-46 |
| MS.gene052290 | MS.gene71692 | 0.818984 | 1.47E-52 | -1.69E-46 |
| MS.gene052310 | MS.gene71692 | 0.822207 | 2.68E-53 | -1.69E-46 |
| MS.gene052379 | MS.gene71692 | 0.811673 | 6.23E-51 | -1.69E-46 |
| MS.gene052484 | MS.gene71692 | 0.806618 | 7.54E-50 | -1.69E-46 |
| MS.gene052870 | MS.gene71692 | 0.808026 | 3.79E-50 | -1.69E-46 |
| MS.gene052872 | MS.gene71692 | 0.809722 | 1.64E-50 | -1.69E-46 |
| MS.gene053103 | MS.gene71692 | 0.833882 | 4.13E-56 | -1.69E-46 |
| MS.gene053104 | MS.gene71692 | 0.86047 | 2.02E-63 | -1.69E-46 |
| MS.gene053107 | MS.gene71692 | 0.823675 | 1.22E-53 | -1.69E-46 |
| MS.gene053207 | MS.gene71692 | 0.80157 | 8.46E-49 | -1.69E-46 |
| MS.gene053322 | MS.gene71692 | 0.833115 | 6.42E-56 | -1.69E-46 |
| MS.gene053579 | MS.gene71692 | 0.82108 | 4.88E-53 | -1.69E-46 |
| MS.gene053632 | MS.gene71692 | 0.806343 | 8.61E-50 | -1.69E-46 |
| MS.gene053971 | MS.gene71692 | 0.824574 | 7.50E-54 | -1.69E-46 |
| MS.gene054642 | MS.gene71692 | 0.812889 | 3.38E-51 | -1.69E-46 |
| MS.gene054884 | MS.gene71692 | -0.808234 | 3.42E-50 | -1.69E-46 |
| MS.gene055206 | MS.gene71692 | 0.82298 | 1.77E-53 | -1.69E-46 |
| MS.gene055289 | MS.gene71692 | 0.812488 | 4.13E-51 | -1.69E-46 |
| MS.gene055370 | MS.gene71692 | 0.805741 | 1.15E-49 | -1.69E-46 |
| MS.gene055536 | MS.gene71692 | -0.809514 | 1.82E-50 | -1.69E-46 |
| MS.gene055577 | MS.gene71692 | 0.807515 | 4.87E-50 | -1.69E-46 |
| MS.gene05592 | MS.gene71692 | 0.807948 | 3.94E-50 | -1.69E-46 |
| MS.gene056609 | MS.gene71692 | 0.810177 | 1.31E-50 | -1.69E-46 |
| MS.gene056633 | MS.gene71692 | 0.838842 | 2.26E-57 | -1.69E-46 |
| MS.gene056664 | MS.gene71692 | 0.809534 | 1.80E-50 | -1.69E-46 |
| MS.gene056796 | MS.gene71692 | 0.820877 | 5.44E-53 | -1.69E-46 |
| MS.gene056897 | MS.gene71692 | 0.838556 | 2.68E-57 | -1.69E-46 |
| MS.gene056903 | MS.gene71692 | 0.800348 | 1.50E-48 | -1.69E-46 |
| MS.gene057032 | MS.gene71692 | 0.811285 | 7.56E-51 | -1.69E-46 |
| MS.gene057129 | MS.gene71692 | 0.837057 | 6.51E-57 | -1.69E-46 |
| MS.gene057196 | MS.gene71692 | 0.805655 | 1.20E-49 | -1.69E-46 |
| MS.gene057246 | MS.gene71692 | 0.848425 | 6.18E-60 | -1.69E-46 |
| MS.gene057332 | MS.gene71692 | 0.82115 | 4.71E-53 | -1.69E-46 |
| MS.gene057658 | MS.gene71692 | 0.82986 | 4.06E-55 | -1.69E-46 |
| MS.gene058019 | MS.gene71692 | 0.801657 | 8.12E-49 | -1.69E-46 |
| MS.gene058082 | MS.gene71692 | 0.83295 | 7.05E-56 | -1.69E-46 |
| MS.gene058158 | MS.gene71692 | -0.828927 | 6.85E-55 | -1.69E-46 |
| MS.gene058233 | MS.gene71692 | 0.846779 | 1.75E-59 | -1.69E-46 |
| MS.gene058293 | MS.gene71692 | 0.830804 | 2.39E-55 | -1.69E-46 |
| MS.gene058419 | MS.gene71692 | 0.808755 | 2.65E-50 | -1.69E-46 |
| MS.gene058544 | MS.gene71692 | 0.812059 | 5.13E-51 | -1.69E-46 |
| MS.gene058660 | MS.gene71692 | 0.8003 | 1.54E-48 | -1.69E-46 |
| MS.gene058723 | MS.gene71692 | 0.822279 | 2.58E-53 | -1.69E-46 |
| MS.gene058746 | MS.gene71692 | 0.838519 | 2.74E-57 | -1.69E-46 |
| MS.gene058748 | MS.gene71692 | 0.817642 | 2.97E-52 | -1.69E-46 |
| MS.gene058838 | MS.gene71692 | 0.817708 | 2.87E-52 | -1.69E-46 |
| MS.gene05914 | MS.gene71692 | 0.821842 | 3.26E-53 | -1.69E-46 |
| MS.gene05934 | MS.gene71692 | 0.840769 | 7.12E-58 | -1.69E-46 |
| MS.gene059536 | MS.gene71692 | 0.839174 | 1.85E-57 | -1.69E-46 |
| MS.gene059688 | MS.gene71692 | 0.800697 | 1.28E-48 | -1.69E-46 |
| MS.gene059692 | MS.gene71692 | 0.812589 | 3.93E-51 | -1.69E-46 |
| MS.gene059695 | MS.gene71692 | 0.81361 | 2.35E-51 | -1.69E-46 |
| MS.gene059960 | MS.gene71692 | 0.852864 | 3.49E-61 | -1.69E-46 |
| MS.gene060804 | MS.gene71692 | 0.828064 | 1.11E-54 | -1.69E-46 |
| MS.gene06092 | MS.gene71692 | 0.841081 | 5.90E-58 | -1.69E-46 |
| MS.gene061041 | MS.gene71692 | 0.82325 | 1.53E-53 | -1.69E-46 |
| MS.gene061150 | MS.gene71692 | 0.817124 | 3.88E-52 | -1.69E-46 |
| MS.gene061200 | MS.gene71692 | 0.801616 | 8.28E-49 | -1.69E-46 |
| MS.gene061231 | MS.gene71692 | 0.819226 | 1.30E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71692.t1 | MTR_1g107490 | 97.241 | 145 | 4 | 0 | 1 | 145 | 1 | 145 | 1.43e-99 | 282 |
| MS.gene71692.t1 | MTR_1g107490 | 95.455 | 132 | 6 | 0 | 1 | 132 | 1 | 132 | 1.20e-88 | 254 |
| MS.gene71692.t1 | MTR_1g107490 | 94.690 | 113 | 6 | 0 | 1 | 113 | 1 | 113 | 1.15e-74 | 218 |
| MS.gene71692.t1 | MTR_1g107490 | 96.396 | 111 | 4 | 0 | 1 | 111 | 1 | 111 | 1.71e-74 | 218 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71692.t1 | AT4G34190 | 56.849 | 146 | 60 | 2 | 3 | 145 | 1 | 146 | 2.99e-47 | 150 |
Find 47 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTCGCATCTTATCGAAAC+TGG | 0.316015 | 1.1:-77194456 | None:intergenic |
| ATTACTGTTGAAATTACTTC+TGG | 0.319891 | 1.1:+77194549 | MS.gene71692:CDS |
| GCAGGAACCAAAGTTGGTTT+AGG | 0.337277 | 1.1:-77193509 | None:intergenic |
| ATGGGAACGGTTTGGATGTA+TGG | 0.346112 | 1.1:+77194490 | MS.gene71692:CDS |
| TGATCCGGAGCAATCATAAA+AGG | 0.355506 | 1.1:+77194412 | MS.gene71692:CDS |
| GGAAATTGAGCAGAGGTTGC+AGG | 0.362163 | 1.1:-77193488 | None:intergenic |
| ACAGTTGCCTTGGCCGTAAC+AGG | 0.365155 | 1.1:+77195145 | MS.gene71692:CDS |
| TCAATTTCCTAAACCAACTT+TGG | 0.392958 | 1.1:+77193502 | MS.gene71692:CDS |
| GCTAGAGCATCCTTTGCAAC+TGG | 0.420563 | 1.1:+77193530 | MS.gene71692:CDS |
| GTTGAAATTACTTCTGGAAA+GGG | 0.425412 | 1.1:+77194555 | MS.gene71692:CDS |
| ATCAGTTCTCTGAGGCTGAC+TGG | 0.425625 | 1.1:-77195201 | None:intergenic |
| GTTTGGATGTATGGCTTGGC+CGG | 0.431706 | 1.1:+77194499 | MS.gene71692:CDS |
| TCTCTTTCTGTCTCTCTTCG+TGG | 0.434411 | 1.1:+77193327 | MS.gene71692:CDS |
| ATCCAAACCGTTCCCATCCT+TGG | 0.459057 | 1.1:-77194484 | None:intergenic |
| CACCAAGGATGGGAACGGTT+TGG | 0.459933 | 1.1:+77194482 | MS.gene71692:CDS |
| AGAAGTAATTTCAACAGTAA+TGG | 0.474215 | 1.1:-77194547 | None:intergenic |
| GCTCTAGCAGGAACCAAAGT+TGG | 0.477360 | 1.1:-77193515 | None:intergenic |
| CTTGGCCGGGTAGCCATGGT+TGG | 0.479318 | 1.1:+77194513 | MS.gene71692:CDS |
| TTGACTTGTCTATAGTGATC+CGG | 0.483262 | 1.1:+77194397 | MS.gene71692:intron |
| AATTAGAAAAGTTACTTAGT+GGG | 0.486476 | 1.1:-77193556 | None:intergenic |
| TGCGAGCAAAACACCAAGGA+TGG | 0.496748 | 1.1:+77194471 | MS.gene71692:CDS |
| GACACCCACCAGTCCTGTTA+CGG | 0.499084 | 1.1:-77195158 | None:intergenic |
| TGCCTTGGCCGTAACAGGAC+TGG | 0.500300 | 1.1:+77195150 | MS.gene71692:CDS |
| TGTTGAAATTACTTCTGGAA+AGG | 0.500335 | 1.1:+77194554 | MS.gene71692:CDS |
| TCCACTGCCTACAGTTGCCT+TGG | 0.503726 | 1.1:+77195135 | MS.gene71692:CDS |
| CACCAGTCCTGTTACGGCCA+AGG | 0.507970 | 1.1:-77195152 | None:intergenic |
| AACGGTTTGGATGTATGGCT+TGG | 0.508500 | 1.1:+77194495 | MS.gene71692:CDS |
| TTTGGATGTATGGCTTGGCC+GGG | 0.518757 | 1.1:+77194500 | MS.gene71692:CDS |
| GAAATTGAGCAGAGGTTGCA+GGG | 0.522794 | 1.1:-77193487 | None:intergenic |
| GTTGCAAAGGATGCTCTAGC+AGG | 0.542909 | 1.1:-77193527 | None:intergenic |
| CAAAACCAACCATGGCTACC+CGG | 0.549263 | 1.1:-77194518 | None:intergenic |
| AGAGACAGAAAGAGAAGCAG+AGG | 0.554751 | 1.1:-77193319 | None:intergenic |
| GCCAAGGCAACTGTAGGCAG+TGG | 0.574143 | 1.1:-77195136 | None:intergenic |
| ATTAGAAAAGTTACTTAGTG+GGG | 0.581454 | 1.1:-77193555 | None:intergenic |
| CTTGGCCGTAACAGGACTGG+TGG | 0.598603 | 1.1:+77195153 | MS.gene71692:CDS |
| ATGGCTTGGCCGGGTAGCCA+TGG | 0.601341 | 1.1:+77194509 | MS.gene71692:CDS |
| TAGTGGGGAACCAGTTGCAA+AGG | 0.603632 | 1.1:-77193540 | None:intergenic |
| TGGTTTAGGAAATTGAGCAG+AGG | 0.606409 | 1.1:-77193495 | None:intergenic |
| GTTACGGCCAAGGCAACTGT+AGG | 0.623177 | 1.1:-77195142 | None:intergenic |
| GCGAGCAAAACACCAAGGAT+GGG | 0.623826 | 1.1:+77194472 | MS.gene71692:CDS |
| GGCCACTGCAAAACCAACCA+TGG | 0.623933 | 1.1:-77194526 | None:intergenic |
| TTCTGGAAAGGGACTCCTAG+AGG | 0.632552 | 1.1:+77194566 | MS.gene71692:CDS |
| TTGAGCTTGAGCAAGTGCCA+TGG | 0.644960 | 1.1:-77193295 | None:intergenic |
| CAAAACACCAAGGATGGGAA+CGG | 0.652602 | 1.1:+77194477 | MS.gene71692:CDS |
| TTGGCCGTAACAGGACTGGT+GGG | 0.657190 | 1.1:+77195154 | MS.gene71692:CDS |
| AATATTTAATCAGTTCTCTG+AGG | 0.658496 | 1.1:-77195209 | None:intergenic |
| AAGATGCGAGCAAAACACCA+AGG | 0.726429 | 1.1:+77194467 | MS.gene71692:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTATTATTAATTTTTTAA+AGG | + | chr1.1:77193591-77193610 | MS.gene71692:intron | 0.0% |
| !! | AAAAAAAAAAAAAATGAAAC+AGG | - | chr1.1:77193373-77193392 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAAATGAAACA+GGG | - | chr1.1:77193372-77193391 | None:intergenic | 10.0% |
| !! | ATAAAAAATAAATGATCTAT+AGG | + | chr1.1:77193802-77193821 | MS.gene71692:intron | 10.0% |
| !! | AAAAAAAAAAAATGAAACAG+GGG | - | chr1.1:77193371-77193390 | None:intergenic | 15.0% |
| !! | AATTAGAAAAGTTACTTAGT+GGG | - | chr1.1:77193559-77193578 | None:intergenic | 20.0% |
| !! | TCTAAAAGCCAATATAATAT+CGG | - | chr1.1:77193670-77193689 | None:intergenic | 20.0% |
| !!! | AAATGACACTCATTTTAATT+CGG | + | chr1.1:77194121-77194140 | MS.gene71692:intron | 20.0% |
| !!! | AATTAAAATGAGTGTCATTT+AGG | - | chr1.1:77194121-77194140 | None:intergenic | 20.0% |
| !!! | AATTTCATTTTGTAGTATGA+GGG | + | chr1.1:77193689-77193708 | MS.gene71692:intron | 20.0% |
| ! | AAACGTAATAAAGTTCGTTA+CGG | - | chr1.1:77194988-77195007 | None:intergenic | 25.0% |
| ! | AGAAGTAATTTCAACAGTAA+TGG | - | chr1.1:77194550-77194569 | None:intergenic | 25.0% |
| ! | ATTACTGTTGAAATTACTTC+TGG | + | chr1.1:77194549-77194568 | MS.gene71692:CDS | 25.0% |
| ! | ATTAGAAAAGTTACTTAGTG+GGG | - | chr1.1:77193558-77193577 | None:intergenic | 25.0% |
| ! | GAATTAGAAAAGTTACTTAG+TGG | - | chr1.1:77193560-77193579 | None:intergenic | 25.0% |
| ! | TAATCTTATACAATAAGACG+CGG | + | chr1.1:77194193-77194212 | MS.gene71692:intron | 25.0% |
| ! | TAGATTAACTTCATAGTCTT+AGG | - | chr1.1:77194270-77194289 | None:intergenic | 25.0% |
| ! | TATTATACTATAGCATCGTT+TGG | + | chr1.1:77194161-77194180 | MS.gene71692:intron | 25.0% |
| ! | TTGTTGAAATAAGATTCGTT+AGG | + | chr1.1:77194360-77194379 | MS.gene71692:intron | 25.0% |
| !! | AGATTAACTTCATAGTCTTA+GGG | - | chr1.1:77194269-77194288 | None:intergenic | 25.0% |
| !! | GAATTTCATTTTGTAGTATG+AGG | + | chr1.1:77193688-77193707 | MS.gene71692:intron | 25.0% |
| !! | GTAATTAGTAGTACTACTTT+TGG | + | chr1.1:77193742-77193761 | MS.gene71692:intron | 25.0% |
| !! | TCCATCAAATGATTGATAAT+TGG | + | chr1.1:77194690-77194709 | MS.gene71692:intron | 25.0% |
| !!! | AACATTTGAGTTTTGACAAA+TGG | - | chr1.1:77194742-77194761 | None:intergenic | 25.0% |
| !!! | AATGACACTCATTTTAATTC+GGG | + | chr1.1:77194122-77194141 | MS.gene71692:intron | 25.0% |
| !!! | ACATTTGAGTTTTGACAAAT+GGG | - | chr1.1:77194741-77194760 | None:intergenic | 25.0% |
| ATTGAGTGCTACAATAGAAA+TGG | - | chr1.1:77193415-77193434 | None:intergenic | 30.0% | |
| CAAAACTCAAATGTTTGCTT+TGG | + | chr1.1:77194747-77194766 | MS.gene71692:intron | 30.0% | |
| CACTATAAAGTAAAGGAGAA+AGG | - | chr1.1:77194799-77194818 | None:intergenic | 30.0% | |
| CAGGCAATAATATTGAATAG+AGG | - | chr1.1:77194079-77194098 | None:intergenic | 30.0% | |
| CCATACACACTATAAAGTAA+AGG | - | chr1.1:77194806-77194825 | None:intergenic | 30.0% | |
| CCTTTACTTTATAGTGTGTA+TGG | + | chr1.1:77194803-77194822 | MS.gene71692:intron | 30.0% | |
| GCAATAATATTGAATAGAGG+AGG | - | chr1.1:77194076-77194095 | None:intergenic | 30.0% | |
| GCCAATTATCAATCATTTGA+TGG | - | chr1.1:77194694-77194713 | None:intergenic | 30.0% | |
| GTAACTCAAAGTTTACGTTA+TGG | - | chr1.1:77194604-77194623 | None:intergenic | 30.0% | |
| GTACTACTAATTACAAGCAA+AGG | - | chr1.1:77193736-77193755 | None:intergenic | 30.0% | |
| GTAGACTACCGATATTATAT+TGG | + | chr1.1:77193659-77193678 | MS.gene71692:intron | 30.0% | |
| TCAATTTCCTAAACCAACTT+TGG | + | chr1.1:77193502-77193521 | MS.gene71692:CDS | 30.0% | |
| ! | AATTCGGGTTTATTCACATT+TGG | + | chr1.1:77194137-77194156 | MS.gene71692:intron | 30.0% |
| ! | GATCTTTTAAGCTATTGAGT+TGG | + | chr1.1:77194862-77194881 | MS.gene71692:intron | 30.0% |
| ! | GATTAACTTCATAGTCTTAG+GGG | - | chr1.1:77194268-77194287 | None:intergenic | 30.0% |
| ! | GTTGAAATTACTTCTGGAAA+GGG | + | chr1.1:77194555-77194574 | MS.gene71692:CDS | 30.0% |
| ! | TGTTGAAATTACTTCTGGAA+AGG | + | chr1.1:77194554-77194573 | MS.gene71692:CDS | 30.0% |
| !! | ACTTTGATTTTGCAGAACTT+TGG | + | chr1.1:77195103-77195122 | MS.gene71692:intron | 30.0% |
| !! | ATGCAGATTTTGCTATAGAA+TGG | - | chr1.1:77193834-77193853 | None:intergenic | 30.0% |
| !! | ATTTGAGTTTTGACAAATGG+GGG | - | chr1.1:77194739-77194758 | None:intergenic | 30.0% |
| !! | CATTTGAGTTTTGACAAATG+GGG | - | chr1.1:77194740-77194759 | None:intergenic | 30.0% |
| !! | TGCAGATTTTGCTATAGAAT+GGG | - | chr1.1:77193833-77193852 | None:intergenic | 30.0% |
| !!! | ATGACTGAGTTCTTTGTTTT+TGG | + | chr1.1:77194035-77194054 | MS.gene71692:intron | 30.0% |
| !!! | TTGGTATTTTAGCTGCAATA+TGG | + | chr1.1:77194766-77194785 | MS.gene71692:intron | 30.0% |
| CTACAATAGAAATGGAACAG+GGG | - | chr1.1:77193407-77193426 | None:intergenic | 35.0% | |
| GAAAAGCTATGATGCTAGTT+AGG | + | chr1.1:77194312-77194331 | MS.gene71692:intron | 35.0% | |
| GCTACAATAGAAATGGAACA+GGG | - | chr1.1:77193408-77193427 | None:intergenic | 35.0% | |
| GTTAATCTATGATGCCAGTT+AGG | + | chr1.1:77194281-77194300 | MS.gene71692:intron | 35.0% | |
| TGCTACAATAGAAATGGAAC+AGG | - | chr1.1:77193409-77193428 | None:intergenic | 35.0% | |
| ! | ACTTCCTTTTATGATTGCTC+CGG | - | chr1.1:77194419-77194438 | None:intergenic | 35.0% |
| ! | ATTATTGCCTGCTTAGTTCT+TGG | + | chr1.1:77194088-77194107 | MS.gene71692:intron | 35.0% |
| ! | TTTGAAGCAACTGTGAGAAA+TGG | + | chr1.1:77193946-77193965 | MS.gene71692:intron | 35.0% |
| !! | GAGTTGGTGTAGTGATATAT+AGG | + | chr1.1:77194878-77194897 | MS.gene71692:intron | 35.0% |
| !! | TTGACTTGTCTATAGTGATC+CGG | + | chr1.1:77194397-77194416 | MS.gene71692:intron | 35.0% |
| AAACAGGGGATTGAGAGTAA+TGG | - | chr1.1:77193357-77193376 | None:intergenic | 40.0% | |
| AACAGGGGATTGAGAGTAAT+GGG | - | chr1.1:77193356-77193375 | None:intergenic | 40.0% | |
| AAGAGAGGTTGAGATGAGTA+AGG | - | chr1.1:77195024-77195043 | None:intergenic | 40.0% | |
| ATTGTTGCCAAGAACTAAGC+AGG | - | chr1.1:77194098-77194117 | None:intergenic | 40.0% | |
| CTATGATGCTAGTTAGGCTT+CGG | + | chr1.1:77194318-77194337 | MS.gene71692:intron | 40.0% | |
| GCTAAACTGAGTGATAAGAG+AGG | - | chr1.1:77195039-77195058 | None:intergenic | 40.0% | |
| TATGATGCTAGTTAGGCTTC+GGG | + | chr1.1:77194319-77194338 | MS.gene71692:intron | 40.0% | |
| TGATCCGGAGCAATCATAAA+AGG | + | chr1.1:77194412-77194431 | MS.gene71692:CDS | 40.0% | |
| TGGTTTAGGAAATTGAGCAG+AGG | - | chr1.1:77193498-77193517 | None:intergenic | 40.0% | |
| ! | CTTTTCTTGCAATGCCTAAC+TGG | - | chr1.1:77194298-77194317 | None:intergenic | 40.0% |
| AAGATGCGAGCAAAACACCA+AGG | + | chr1.1:77194467-77194486 | MS.gene71692:CDS | 45.0% | |
| AGAGACAGAAAGAGAAGCAG+AGG | - | chr1.1:77193322-77193341 | None:intergenic | 45.0% | |
| ATGATGCTAGTTAGGCTTCG+GGG | + | chr1.1:77194320-77194339 | MS.gene71692:intron | 45.0% | |
| CAAAACACCAAGGATGGGAA+CGG | + | chr1.1:77194477-77194496 | MS.gene71692:CDS | 45.0% | |
| CGTTGAAACTTGCACTCACT+TGG | - | chr1.1:77194957-77194976 | None:intergenic | 45.0% | |
| GAAATTGAGCAGAGGTTGCA+GGG | - | chr1.1:77193490-77193509 | None:intergenic | 45.0% | |
| GAAGCAACTGTGAGAAATGG+TGG | + | chr1.1:77193949-77193968 | MS.gene71692:intron | 45.0% | |
| TCTCTTTCTGTCTCTCTTCG+TGG | + | chr1.1:77193327-77193346 | MS.gene71692:CDS | 45.0% | |
| TGCTCGCATCTTATCGAAAC+TGG | - | chr1.1:77194459-77194478 | None:intergenic | 45.0% | |
| TGGTGCGCAATATTACCTCT+AGG | - | chr1.1:77194584-77194603 | None:intergenic | 45.0% | |
| ! | AACGGTTTGGATGTATGGCT+TGG | + | chr1.1:77194495-77194514 | MS.gene71692:CDS | 45.0% |
| ! | ATGGGAACGGTTTGGATGTA+TGG | + | chr1.1:77194490-77194509 | MS.gene71692:CDS | 45.0% |
| ! | GCAGGAACCAAAGTTGGTTT+AGG | - | chr1.1:77193512-77193531 | None:intergenic | 45.0% |
| ATCCAAACCGTTCCCATCCT+TGG | - | chr1.1:77194487-77194506 | None:intergenic | 50.0% | |
| CAAAACCAACCATGGCTACC+CGG | - | chr1.1:77194521-77194540 | None:intergenic | 50.0% | |
| GCGAGCAAAACACCAAGGAT+GGG | + | chr1.1:77194472-77194491 | MS.gene71692:CDS | 50.0% | |
| GCTCACAAGCTTCACTTGCT+CGG | - | chr1.1:77193919-77193938 | None:intergenic | 50.0% | |
| GCTCTAGCAGGAACCAAAGT+TGG | - | chr1.1:77193518-77193537 | None:intergenic | 50.0% | |
| GGAAATTGAGCAGAGGTTGC+AGG | - | chr1.1:77193491-77193510 | None:intergenic | 50.0% | |
| GTTGCAAAGGATGCTCTAGC+AGG | - | chr1.1:77193530-77193549 | None:intergenic | 50.0% | |
| TAGTGGGGAACCAGTTGCAA+AGG | - | chr1.1:77193543-77193562 | None:intergenic | 50.0% | |
| TGCGAGCAAAACACCAAGGA+TGG | + | chr1.1:77194471-77194490 | MS.gene71692:CDS | 50.0% | |
| ! | GCTAGAGCATCCTTTGCAAC+TGG | + | chr1.1:77193530-77193549 | MS.gene71692:CDS | 50.0% |
| ! | GTTTGGATGTATGGCTTGGC+CGG | + | chr1.1:77194499-77194518 | MS.gene71692:CDS | 50.0% |
| ! | TTCTGGAAAGGGACTCCTAG+AGG | + | chr1.1:77194566-77194585 | MS.gene71692:CDS | 50.0% |
| ! | TTTGGATGTATGGCTTGGCC+GGG | + | chr1.1:77194500-77194519 | MS.gene71692:CDS | 50.0% |
| !!! | AGCCATGGTTGGTTTTGCAG+TGG | + | chr1.1:77194524-77194543 | MS.gene71692:CDS | 50.0% |
| ACAGTTGCCTTGGCCGTAAC+AGG | + | chr1.1:77195145-77195164 | MS.gene71692:CDS | 55.0% | |
| CACCAAGGATGGGAACGGTT+TGG | + | chr1.1:77194482-77194501 | MS.gene71692:CDS | 55.0% | |
| GACACCCACCAGTCCTGTTA+CGG | - | chr1.1:77195161-77195180 | None:intergenic | 55.0% | |
| GGCCACTGCAAAACCAACCA+TGG | - | chr1.1:77194529-77194548 | None:intergenic | 55.0% | |
| GTTACGGCCAAGGCAACTGT+AGG | - | chr1.1:77195145-77195164 | None:intergenic | 55.0% | |
| TAGTTAGGCTTCGGGGAAGG+TGG | + | chr1.1:77194327-77194346 | MS.gene71692:intron | 55.0% | |
| TCCACTGCCTACAGTTGCCT+TGG | + | chr1.1:77195135-77195154 | MS.gene71692:CDS | 55.0% | |
| TGCTAGTTAGGCTTCGGGGA+AGG | + | chr1.1:77194324-77194343 | MS.gene71692:intron | 55.0% | |
| ! | TTGGCCGTAACAGGACTGGT+GGG | + | chr1.1:77195154-77195173 | MS.gene71692:CDS | 55.0% |
| CACCAGTCCTGTTACGGCCA+AGG | - | chr1.1:77195155-77195174 | None:intergenic | 60.0% | |
| CTTGGCCGTAACAGGACTGG+TGG | + | chr1.1:77195153-77195172 | MS.gene71692:CDS | 60.0% | |
| GCCAAGGCAACTGTAGGCAG+TGG | - | chr1.1:77195139-77195158 | None:intergenic | 60.0% | |
| TGCCTTGGCCGTAACAGGAC+TGG | + | chr1.1:77195150-77195169 | MS.gene71692:CDS | 60.0% | |
| CTTGGCCGGGTAGCCATGGT+TGG | + | chr1.1:77194513-77194532 | MS.gene71692:CDS | 65.0% | |
| ! | ATGGCTTGGCCGGGTAGCCA+TGG | + | chr1.1:77194509-77194528 | MS.gene71692:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 77193297 | 77195222 | 77193297 | ID=MS.gene71692 |
| chr1.1 | mRNA | 77193297 | 77195222 | 77193297 | ID=MS.gene71692.t1;Parent=MS.gene71692 |
| chr1.1 | exon | 77193297 | 77193348 | 77193297 | ID=MS.gene71692.t1.exon1;Parent=MS.gene71692.t1 |
| chr1.1 | CDS | 77193297 | 77193348 | 77193297 | ID=cds.MS.gene71692.t1;Parent=MS.gene71692.t1 |
| chr1.1 | exon | 77193459 | 77193563 | 77193459 | ID=MS.gene71692.t1.exon2;Parent=MS.gene71692.t1 |
| chr1.1 | CDS | 77193459 | 77193563 | 77193459 | ID=cds.MS.gene71692.t1;Parent=MS.gene71692.t1 |
| chr1.1 | exon | 77194412 | 77194587 | 77194412 | ID=MS.gene71692.t1.exon3;Parent=MS.gene71692.t1 |
| chr1.1 | CDS | 77194412 | 77194587 | 77194412 | ID=cds.MS.gene71692.t1;Parent=MS.gene71692.t1 |
| chr1.1 | exon | 77195118 | 77195222 | 77195118 | ID=MS.gene71692.t1.exon4;Parent=MS.gene71692.t1 |
| chr1.1 | CDS | 77195118 | 77195222 | 77195118 | ID=cds.MS.gene71692.t1;Parent=MS.gene71692.t1 |
| Gene Sequence |
| Protein sequence |
