Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95383.t1 | XP_013460015.1 | 96.8 | 251 | 8 | 0 | 1 | 251 | 100 | 350 | 1.50E-118 | 435.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95383.t1 | Q94EG9 | 57.5 | 259 | 76 | 4 | 1 | 251 | 94 | 326 | 2.2e-62 | 240.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95383.t1 | Q6VM15 | 96.8 | 251 | 8 | 0 | 1 | 251 | 100 | 350 | 1.1e-118 | 435.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049993 | MS.gene95383 | 0.807963 | 3.91E-50 | -1.69E-46 |
| MS.gene050670 | MS.gene95383 | 0.802204 | 6.27E-49 | -1.69E-46 |
| MS.gene051525 | MS.gene95383 | 0.83005 | 3.65E-55 | -1.69E-46 |
| MS.gene051582 | MS.gene95383 | 0.818574 | 1.83E-52 | -1.69E-46 |
| MS.gene051588 | MS.gene95383 | 0.843819 | 1.11E-58 | -1.69E-46 |
| MS.gene052011 | MS.gene95383 | -0.826269 | 2.98E-54 | -1.69E-46 |
| MS.gene052253 | MS.gene95383 | 0.820616 | 6.24E-53 | -1.69E-46 |
| MS.gene053873 | MS.gene95383 | 0.829853 | 4.08E-55 | -1.69E-46 |
| MS.gene054102 | MS.gene95383 | 0.848278 | 6.79E-60 | -1.69E-46 |
| MS.gene05413 | MS.gene95383 | 0.811242 | 7.72E-51 | -1.69E-46 |
| MS.gene054183 | MS.gene95383 | 0.868789 | 5.03E-66 | -1.69E-46 |
| MS.gene054917 | MS.gene95383 | 0.809556 | 1.78E-50 | -1.69E-46 |
| MS.gene054918 | MS.gene95383 | 0.80331 | 3.70E-49 | -1.69E-46 |
| MS.gene054920 | MS.gene95383 | 0.821426 | 4.06E-53 | -1.69E-46 |
| MS.gene055369 | MS.gene95383 | 0.802489 | 5.48E-49 | -1.69E-46 |
| MS.gene056497 | MS.gene95383 | 0.810713 | 1.01E-50 | -1.69E-46 |
| MS.gene056514 | MS.gene95383 | 0.875502 | 2.93E-68 | -1.69E-46 |
| MS.gene056899 | MS.gene95383 | -0.808719 | 2.70E-50 | -1.69E-46 |
| MS.gene057476 | MS.gene95383 | 0.827079 | 1.91E-54 | -1.69E-46 |
| MS.gene057749 | MS.gene95383 | 0.807603 | 4.66E-50 | -1.69E-46 |
| MS.gene057825 | MS.gene95383 | 0.832648 | 8.39E-56 | -1.69E-46 |
| MS.gene057841 | MS.gene95383 | 0.81299 | 3.21E-51 | -1.69E-46 |
| MS.gene057888 | MS.gene95383 | 0.846566 | 2.00E-59 | -1.69E-46 |
| MS.gene05886 | MS.gene95383 | 0.816569 | 5.17E-52 | -1.69E-46 |
| MS.gene058885 | MS.gene95383 | 0.827428 | 1.57E-54 | -1.69E-46 |
| MS.gene058995 | MS.gene95383 | 0.806677 | 7.32E-50 | -1.69E-46 |
| MS.gene059011 | MS.gene95383 | 0.800673 | 1.29E-48 | -1.69E-46 |
| MS.gene059082 | MS.gene95383 | 0.804033 | 2.62E-49 | -1.69E-46 |
| MS.gene059141 | MS.gene95383 | 0.805699 | 1.18E-49 | -1.69E-46 |
| MS.gene059420 | MS.gene95383 | 0.837061 | 6.49E-57 | -1.69E-46 |
| MS.gene059462 | MS.gene95383 | 0.826226 | 3.05E-54 | -1.69E-46 |
| MS.gene059820 | MS.gene95383 | 0.812729 | 3.66E-51 | -1.69E-46 |
| MS.gene060403 | MS.gene95383 | 0.811081 | 8.37E-51 | -1.69E-46 |
| MS.gene061214 | MS.gene95383 | 0.837696 | 4.46E-57 | -1.69E-46 |
| MS.gene061215 | MS.gene95383 | 0.83594 | 1.25E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95383.t1 | MTR_3g058630 | 98.406 | 251 | 4 | 0 | 1 | 251 | 100 | 350 | 0.0 | 504 |
| MS.gene95383.t1 | MTR_2g097580 | 55.952 | 252 | 97 | 5 | 1 | 250 | 97 | 336 | 1.50e-98 | 291 |
| MS.gene95383.t1 | MTR_4g083570 | 22.780 | 259 | 183 | 7 | 1 | 249 | 98 | 349 | 7.50e-13 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95383.t1 | AT1G55910 | 59.459 | 259 | 71 | 5 | 1 | 251 | 94 | 326 | 8.89e-99 | 291 |
| MS.gene95383.t1 | AT5G59520 | 51.383 | 253 | 112 | 4 | 1 | 250 | 109 | 353 | 2.72e-76 | 235 |
| MS.gene95383.t1 | AT1G31260 | 24.060 | 266 | 180 | 9 | 1 | 249 | 103 | 363 | 3.72e-11 | 62.8 |
Find 54 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTGTTATTTCTTCTCTTT+TGG | 0.222822 | 3.3:-47901903 | MS.gene95383:CDS |
| CAGACGCATGGAAAGCTTTA+TGG | 0.223228 | 3.3:-47899865 | MS.gene95383:CDS |
| TTATAGCTGTTGTTATGATA+TGG | 0.275907 | 3.3:-47899511 | MS.gene95383:CDS |
| CTTGCAGTGTCGTTGGGAAT+AGG | 0.356247 | 3.3:-47899536 | MS.gene95383:CDS |
| AGTGATGCTAATGAAACTTT+TGG | 0.367161 | 3.3:-47902001 | MS.gene95383:CDS |
| TAATTCTCAGTCACAATATC+AGG | 0.371536 | 3.3:-47900139 | MS.gene95383:intron |
| ATTCCAATGGCCACACCAAT+TGG | 0.398109 | 3.3:+47899722 | None:intergenic |
| GTCAGCACCACCACCATGAT+TGG | 0.404147 | 3.3:+47901874 | None:intergenic |
| TATAGCTGTTGTTATGATAT+GGG | 0.411672 | 3.3:-47899510 | MS.gene95383:CDS |
| CATGATAGTAGAGGTCGATT+AGG | 0.426412 | 3.3:+47899779 | None:intergenic |
| CAAGCCAACATGAACGCAAA+AGG | 0.431464 | 3.3:+47901956 | None:intergenic |
| AAGTTTCTTGCAGTGTCGTT+GGG | 0.445877 | 3.3:-47899542 | MS.gene95383:CDS |
| CCATGGGCATTGCTCTCCTT+AGG | 0.446281 | 3.3:-47899808 | MS.gene95383:CDS |
| TTGTGTTAACAGAGTTCTGC+TGG | 0.452952 | 3.3:-47900022 | MS.gene95383:intron |
| GCGTTCATGTTGGCTTGTGC+TGG | 0.456845 | 3.3:-47901950 | MS.gene95383:CDS |
| TTCGCAATCTCTAGTCCAAT+TGG | 0.460160 | 3.3:-47899737 | MS.gene95383:CDS |
| CACAGGGTCATGTGGCCGAT+TGG | 0.483842 | 3.3:-47899682 | MS.gene95383:CDS |
| GAAGTTTCTTGCAGTGTCGT+TGG | 0.484647 | 3.3:-47899543 | MS.gene95383:CDS |
| AGTCCAATTGGTGTGGCCAT+TGG | 0.487047 | 3.3:-47899725 | MS.gene95383:CDS |
| CTTGCACCTAGTAGTTCAAT+CGG | 0.503612 | 3.3:-47899983 | MS.gene95383:CDS |
| TCAGCACCACCACCATGATT+GGG | 0.509858 | 3.3:+47901875 | None:intergenic |
| GAAAACAGAATGAGCACAAA+GGG | 0.517694 | 3.3:+47899922 | None:intergenic |
| GGGCATTGCTCTCCTTAGGA+TGG | 0.519832 | 3.3:-47899804 | MS.gene95383:CDS |
| GGTGGTGGTGCTGACGTTGA+AGG | 0.531770 | 3.3:-47901866 | MS.gene95383:CDS |
| AGGTGCAAGATCAGTGTCAT+TGG | 0.531839 | 3.3:+47899997 | None:intergenic |
| CAAACATTCAAAGGCCGACT+CGG | 0.545714 | 3.3:-47899573 | MS.gene95383:CDS |
| GTATCTCCGATTGAACTACT+AGG | 0.558840 | 3.3:+47899977 | None:intergenic |
| GAGAGCAATGCCCATGGCAA+TGG | 0.562553 | 3.3:+47899814 | None:intergenic |
| AAGCCAACATGAACGCAAAA+GGG | 0.565393 | 3.3:+47901957 | None:intergenic |
| AATATTCGCAGCCATTGCCA+TGG | 0.570364 | 3.3:-47899825 | MS.gene95383:CDS |
| TTGCAGGGGCAGACAAAGGA+AGG | 0.574896 | 3.3:-47900173 | MS.gene95383:intron |
| TGTATTAGATTCCACAACAC+AGG | 0.578420 | 3.3:-47899699 | MS.gene95383:CDS |
| ATATCTATGGGTCTAGCTTG+TGG | 0.583623 | 3.3:-47899650 | MS.gene95383:CDS |
| AGATATAGCGAAAATCCAAT+CGG | 0.583976 | 3.3:+47899667 | None:intergenic |
| GTCGATTAGGAACCATCCTA+AGG | 0.588650 | 3.3:+47899792 | None:intergenic |
| CGAAAACAGAATGAGCACAA+AGG | 0.590220 | 3.3:+47899921 | None:intergenic |
| TCGGCCTTTGAATGTTTGTG+AGG | 0.596171 | 3.3:+47899578 | None:intergenic |
| TGTGCCTCACAAACATTCAA+AGG | 0.597773 | 3.3:-47899582 | MS.gene95383:CDS |
| CAAATTGCAGGGGCAGACAA+AGG | 0.599181 | 3.3:-47900177 | MS.gene95383:intron |
| GGAATCTAATACAATTCCAA+TGG | 0.601962 | 3.3:+47899709 | None:intergenic |
| GGCCACATGACCCTGTGTTG+TGG | 0.602728 | 3.3:+47899688 | None:intergenic |
| CCGTGACAAAAGCAGACGCA+TGG | 0.606169 | 3.3:-47899877 | MS.gene95383:CDS |
| ATATTCGCAGCCATTGCCAT+GGG | 0.618731 | 3.3:-47899824 | MS.gene95383:CDS |
| AAACTTCATATAAGCCGAGT+CGG | 0.619401 | 3.3:+47899559 | None:intergenic |
| GAGAAGCCCAATCATGGTGG+TGG | 0.625685 | 3.3:-47901881 | MS.gene95383:CDS |
| GGTGCTGACGTTGAAGGTCA+AGG | 0.628981 | 3.3:-47901860 | MS.gene95383:intron |
| TTCCACAACACAGGGTCATG+TGG | 0.634030 | 3.3:-47899690 | MS.gene95383:CDS |
| GCAGACAAAGGAAGGAGCAA+CGG | 0.643713 | 3.3:-47900165 | MS.gene95383:CDS |
| GATTGCGAATGCAAAAGCGT+AGG | 0.649494 | 3.3:+47899751 | None:intergenic |
| CCTAAGGAGAGCAATGCCCA+TGG | 0.651165 | 3.3:+47899808 | None:intergenic |
| AATCTCTAGTCCAATTGGTG+TGG | 0.654473 | 3.3:-47899732 | MS.gene95383:CDS |
| GTATTAGATTCCACAACACA+GGG | 0.667227 | 3.3:-47899698 | MS.gene95383:CDS |
| TAGGCTGCACATGATAGTAG+AGG | 0.668698 | 3.3:+47899770 | None:intergenic |
| TTGGAGAAGCCCAATCATGG+TGG | 0.689546 | 3.3:-47901884 | MS.gene95383:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTCTCAAATTATTAT+CGG | - | chr3.3:47899887-47899906 | MS.gene95383:CDS | 10.0% |
| !! | AAGAAAAATTTATTTATTGC+TGG | - | chr3.3:47900726-47900745 | MS.gene95383:intron | 15.0% |
| !! | TATTCCATTATGATTATTTA+TGG | - | chr3.3:47900755-47900774 | MS.gene95383:intron | 15.0% |
| !! | TTGTAATAATGATGAAAATA+TGG | + | chr3.3:47901230-47901249 | None:intergenic | 15.0% |
| !!! | AAATTTTTTCTTCGATTATA+GGG | - | chr3.3:47900323-47900342 | MS.gene95383:intron | 15.0% |
| !!! | ACCTTTTATATTTATCTATT+GGG | + | chr3.3:47900425-47900444 | None:intergenic | 15.0% |
| !!! | ATATTTTCATCATTATTACA+AGG | - | chr3.3:47901229-47901248 | MS.gene95383:intron | 15.0% |
| !!! | TAAACAAAAATTGACTTTTT+AGG | + | chr3.3:47900222-47900241 | None:intergenic | 15.0% |
| !!! | TAAATTTTTTCTTCGATTAT+AGG | - | chr3.3:47900322-47900341 | MS.gene95383:intron | 15.0% |
| !!! | TAATATTATGTTTTTGACTT+TGG | - | chr3.3:47899711-47899730 | MS.gene95383:CDS | 15.0% |
| !!! | TTTTTGTTTATAATAATGAC+CGG | - | chr3.3:47900232-47900251 | MS.gene95383:intron | 15.0% |
| !! | AAATTCAATTCTGATATTTG+CGG | - | chr3.3:47901082-47901101 | MS.gene95383:intron | 20.0% |
| !! | AATCGAAGAAAAAATTTAGA+GGG | + | chr3.3:47900320-47900339 | None:intergenic | 20.0% |
| !! | ACCCAATAGATAAATATAAA+AGG | - | chr3.3:47900421-47900440 | MS.gene95383:intron | 20.0% |
| !! | ATCACCATAAATAATCATAA+TGG | + | chr3.3:47900762-47900781 | None:intergenic | 20.0% |
| !! | TAATAATGATGAAAATATGG+TGG | + | chr3.3:47901227-47901246 | None:intergenic | 20.0% |
| !! | TAATCGAAGAAAAAATTTAG+AGG | + | chr3.3:47900321-47900340 | None:intergenic | 20.0% |
| !! | TTCATGTCTTTATGAATATT+TGG | - | chr3.3:47901052-47901071 | MS.gene95383:intron | 20.0% |
| !! | TTTCTGTTAAAAATTCGATT+TGG | + | chr3.3:47901191-47901210 | None:intergenic | 20.0% |
| !!! | AAATTGAAGGAAAATTTTAG+AGG | - | chr3.3:47900351-47900370 | MS.gene95383:intron | 20.0% |
| !!! | GACCTTTTATATTTATCTAT+TGG | + | chr3.3:47900426-47900445 | None:intergenic | 20.0% |
| !!! | TAAACTTTAGTTGTTTTTGT+TGG | - | chr3.3:47900494-47900513 | MS.gene95383:intron | 20.0% |
| !!! | TACAATAGTCTTAACTATAA+AGG | - | chr3.3:47900688-47900707 | MS.gene95383:intron | 20.0% |
| !!! | TATTGGGTTAAATATGTTTT+TGG | + | chr3.3:47900409-47900428 | None:intergenic | 20.0% |
| !!! | TTTTATTTGTTGGGAAAATA+TGG | - | chr3.3:47900596-47900615 | MS.gene95383:intron | 20.0% |
| ! | AATATTCACATCTCTATAGT+TGG | - | chr3.3:47900927-47900946 | MS.gene95383:intron | 25.0% |
| ! | ACTTTATCCCTAAAACAAAA+AGG | + | chr3.3:47900448-47900467 | None:intergenic | 25.0% |
| ! | ATTATATTCTTCCAACTGTA+AGG | + | chr3.3:47900910-47900929 | None:intergenic | 25.0% |
| ! | CATTCAATAAATGATGTATG+CGG | + | chr3.3:47900197-47900216 | None:intergenic | 25.0% |
| ! | CTCTATAGTTGGATAAAAAT+CGG | - | chr3.3:47900938-47900957 | MS.gene95383:intron | 25.0% |
| ! | GATTATAATCATATGTGTTG+CGG | + | chr3.3:47899854-47899873 | None:intergenic | 25.0% |
| ! | TATAGCTGTTGTTATGATAT+GGG | - | chr3.3:47902005-47902024 | MS.gene95383:CDS | 25.0% |
| ! | TCAACCAAAAAAAAGATAAG+TGG | - | chr3.3:47900821-47900840 | MS.gene95383:intron | 25.0% |
| ! | TTATAGCTGTTGTTATGATA+TGG | - | chr3.3:47902004-47902023 | MS.gene95383:CDS | 25.0% |
| ! | TTATAGGGACTAAAAATTGA+AGG | - | chr3.3:47900338-47900357 | MS.gene95383:intron | 25.0% |
| !! | AAATATGGTTACAATTTTGG+TGG | - | chr3.3:47900611-47900630 | MS.gene95383:intron | 25.0% |
| !! | AATAAACCATCTTTTTGCTA+AGG | - | chr3.3:47901906-47901925 | MS.gene95383:CDS | 25.0% |
| !! | ATAAACCATCTTTTTGCTAA+GGG | - | chr3.3:47901907-47901926 | MS.gene95383:CDS | 25.0% |
| !! | ATAGTCTTAACTATAAAGGT+TGG | - | chr3.3:47900692-47900711 | MS.gene95383:intron | 25.0% |
| !! | GGAAAATATGGTTACAATTT+TGG | - | chr3.3:47900608-47900627 | MS.gene95383:intron | 25.0% |
| !!! | AAAAGGTCCTTTTTGTTTTA+GGG | - | chr3.3:47900438-47900457 | MS.gene95383:intron | 25.0% |
| !!! | ACAAAGCTACTTTCTTTTTT+TGG | - | chr3.3:47901313-47901332 | MS.gene95383:intron | 25.0% |
| !!! | ACTGTGTTGTTTTTATTTGT+TGG | - | chr3.3:47900586-47900605 | MS.gene95383:intron | 25.0% |
| !!! | CTGTGTTGTTTTTATTTGTT+GGG | - | chr3.3:47900587-47900606 | MS.gene95383:intron | 25.0% |
| !!! | TAAAAGGTCCTTTTTGTTTT+AGG | - | chr3.3:47900437-47900456 | MS.gene95383:intron | 25.0% |
| !!! | TCAACCACTTATCTTTTTTT+TGG | + | chr3.3:47900828-47900847 | None:intergenic | 25.0% |
| !!! | TGATTTTAGTATACACCTTT+AGG | - | chr3.3:47899753-47899772 | MS.gene95383:CDS | 25.0% |
| !!! | TTGTGTTATTTCTTCTCTTT+TGG | - | chr3.3:47899612-47899631 | MS.gene95383:CDS | 25.0% |
| !!! | TTTTAGGGATAAAGTGATTA+TGG | - | chr3.3:47900453-47900472 | MS.gene95383:intron | 25.0% |
| ACTTTGCTTATAATAGTGAC+CGG | + | chr3.3:47900125-47900144 | None:intergenic | 30.0% | |
| AGATATAGCGAAAATCCAAT+CGG | + | chr3.3:47901851-47901870 | None:intergenic | 30.0% | |
| CAGTTAAATTAGTGATGACA+AGG | + | chr3.3:47901461-47901480 | None:intergenic | 30.0% | |
| GGAATCTAATACAATTCCAA+TGG | + | chr3.3:47901809-47901828 | None:intergenic | 30.0% | |
| TAATTCTCAGTCACAATATC+AGG | - | chr3.3:47901376-47901395 | MS.gene95383:intron | 30.0% | |
| TGTTTATAATAATGACCGGA+TGG | - | chr3.3:47900236-47900255 | MS.gene95383:intron | 30.0% | |
| TTGTTGGATATGTTCTTCTA+GGG | - | chr3.3:47900510-47900529 | MS.gene95383:intron | 30.0% | |
| TTTGTTGGATATGTTCTTCT+AGG | - | chr3.3:47900509-47900528 | MS.gene95383:intron | 30.0% | |
| ! | AGTGATGCTAATGAAACTTT+TGG | - | chr3.3:47899514-47899533 | MS.gene95383:CDS | 30.0% |
| ! | TGGATTTTCGCTATATCTAT+GGG | - | chr3.3:47901853-47901872 | MS.gene95383:intron | 30.0% |
| ! | TTGGATTTTCGCTATATCTA+TGG | - | chr3.3:47901852-47901871 | MS.gene95383:intron | 30.0% |
| !!! | TTTTTGACTTTGGTCTTGTT+TGG | - | chr3.3:47899721-47899740 | MS.gene95383:CDS | 30.0% |
| !!! | TTTTTTTGGTGCAAATTGCA+GGG | - | chr3.3:47901327-47901346 | MS.gene95383:intron | 30.0% |
| AAACTTCATATAAGCCGAGT+CGG | + | chr3.3:47901959-47901978 | None:intergenic | 35.0% | |
| CATAACCCTTAGCAAAAAGA+TGG | + | chr3.3:47901915-47901934 | None:intergenic | 35.0% | |
| CATAAGCGCTTATATCCTAA+AGG | + | chr3.3:47899771-47899790 | None:intergenic | 35.0% | |
| GAAAACAGAATGAGCACAAA+GGG | + | chr3.3:47901596-47901615 | None:intergenic | 35.0% | |
| GTATTAGATTCCACAACACA+GGG | - | chr3.3:47901817-47901836 | MS.gene95383:intron | 35.0% | |
| GTGCTGTACAAAGATATTTG+TGG | - | chr3.3:47900875-47900894 | MS.gene95383:intron | 35.0% | |
| GTTAGACAAGGTGAATCTTA+AGG | + | chr3.3:47901293-47901312 | None:intergenic | 35.0% | |
| TGTATTAGATTCCACAACAC+AGG | - | chr3.3:47901816-47901835 | MS.gene95383:intron | 35.0% | |
| TTGTGAGCTAGAAGGATAAA+TGG | - | chr3.3:47900790-47900809 | MS.gene95383:intron | 35.0% | |
| ! | ACAAGACTTTGAAAAGTCCA+AGG | + | chr3.3:47900857-47900876 | None:intergenic | 35.0% |
| !! | AAGTAGCTTTGTGTTAGACA+AGG | + | chr3.3:47901305-47901324 | None:intergenic | 35.0% |
| !! | TGGTTACAATTTTGGTGGTT+TGG | - | chr3.3:47900616-47900635 | MS.gene95383:intron | 35.0% |
| !!! | CTTTTTTTGGTGCAAATTGC+AGG | - | chr3.3:47901326-47901345 | MS.gene95383:intron | 35.0% |
| !!! | GTTTTAGAGATTACTCCATC+CGG | + | chr3.3:47900254-47900273 | None:intergenic | 35.0% |
| !!! | TTTTTTGGTGCAAATTGCAG+GGG | - | chr3.3:47901328-47901347 | MS.gene95383:intron | 35.0% |
| AAGCCAACATGAACGCAAAA+GGG | + | chr3.3:47899561-47899580 | None:intergenic | 40.0% | |
| AATCATATGTGTTGCGGTGT+GGG | + | chr3.3:47899848-47899867 | None:intergenic | 40.0% | |
| AATCTCTAGTCCAATTGGTG+TGG | - | chr3.3:47901783-47901802 | MS.gene95383:intron | 40.0% | |
| CATCATATGTATCCAACACC+AGG | + | chr3.3:47899824-47899843 | None:intergenic | 40.0% | |
| CATGATAGTAGAGGTCGATT+AGG | + | chr3.3:47901739-47901758 | None:intergenic | 40.0% | |
| CGAAAACAGAATGAGCACAA+AGG | + | chr3.3:47901597-47901616 | None:intergenic | 40.0% | |
| CTTCCAACTGTAAGGAATCT+AGG | + | chr3.3:47900902-47900921 | None:intergenic | 40.0% | |
| CTTGCACCTAGTAGTTCAAT+CGG | - | chr3.3:47901532-47901551 | MS.gene95383:intron | 40.0% | |
| GCTAGAAGGATAAATGGTTG+AGG | - | chr3.3:47900796-47900815 | MS.gene95383:intron | 40.0% | |
| GTATCTCCGATTGAACTACT+AGG | + | chr3.3:47901541-47901560 | None:intergenic | 40.0% | |
| TAATCATATGTGTTGCGGTG+TGG | + | chr3.3:47899849-47899868 | None:intergenic | 40.0% | |
| TGCTTATAATAGTGACCGGA+GGG | + | chr3.3:47900121-47900140 | None:intergenic | 40.0% | |
| TGTGCCTCACAAACATTCAA+AGG | - | chr3.3:47901933-47901952 | MS.gene95383:CDS | 40.0% | |
| TTCGCAATCTCTAGTCCAAT+TGG | - | chr3.3:47901778-47901797 | MS.gene95383:intron | 40.0% | |
| TTGCTTATAATAGTGACCGG+AGG | + | chr3.3:47900122-47900141 | None:intergenic | 40.0% | |
| TTGTGTTAACAGAGTTCTGC+TGG | - | chr3.3:47901493-47901512 | MS.gene95383:intron | 40.0% | |
| ! | AAGTTTCTTGCAGTGTCGTT+GGG | - | chr3.3:47901973-47901992 | MS.gene95383:CDS | 40.0% |
| ! | ATACCCTTTTGCGTTCATGT+TGG | - | chr3.3:47899555-47899574 | MS.gene95383:CDS | 40.0% |
| ! | ATAGTGACTTGTGAGCTAGA+AGG | - | chr3.3:47900782-47900801 | MS.gene95383:intron | 40.0% |
| ! | ATATCTATGGGTCTAGCTTG+TGG | - | chr3.3:47901865-47901884 | MS.gene95383:CDS | 40.0% |
| ! | TGTGCTCATTCTGTTTTCGA+GGG | - | chr3.3:47901598-47901617 | MS.gene95383:intron | 40.0% |
| ! | TTGTGCTCATTCTGTTTTCG+AGG | - | chr3.3:47901597-47901616 | MS.gene95383:intron | 40.0% |
| !! | GTTTTCGAGGGTTTAGCAAT+TGG | - | chr3.3:47901610-47901629 | MS.gene95383:intron | 40.0% |
| !! | TAAGTGGTTGACTTGATCCT+TGG | - | chr3.3:47900837-47900856 | MS.gene95383:intron | 40.0% |
| !! | TGGTGGTTTGGTACTTGATT+CGG | - | chr3.3:47900628-47900647 | MS.gene95383:intron | 40.0% |
| AATATTCGCAGCCATTGCCA+TGG | - | chr3.3:47901690-47901709 | MS.gene95383:intron | 45.0% | |
| AGGTGCAAGATCAGTGTCAT+TGG | + | chr3.3:47901521-47901540 | None:intergenic | 45.0% | |
| ATAGACACAGAACACGACAC+AGG | + | chr3.3:47899923-47899942 | None:intergenic | 45.0% | |
| ATATTCGCAGCCATTGCCAT+GGG | - | chr3.3:47901691-47901710 | MS.gene95383:intron | 45.0% | |
| ATTCCAATGGCCACACCAAT+TGG | + | chr3.3:47901796-47901815 | None:intergenic | 45.0% | |
| CAAACATTCAAAGGCCGACT+CGG | - | chr3.3:47901942-47901961 | MS.gene95383:CDS | 45.0% | |
| CAAGCCAACATGAACGCAAA+AGG | + | chr3.3:47899562-47899581 | None:intergenic | 45.0% | |
| CACGAACATGACAATGACTG+TGG | + | chr3.3:47901157-47901176 | None:intergenic | 45.0% | |
| CAGACGCATGGAAAGCTTTA+TGG | - | chr3.3:47901650-47901669 | MS.gene95383:intron | 45.0% | |
| GAAGTTTCTTGCAGTGTCGT+TGG | - | chr3.3:47901972-47901991 | MS.gene95383:CDS | 45.0% | |
| GGACCTAGATTCCTTACAGT+TGG | - | chr3.3:47900896-47900915 | MS.gene95383:intron | 45.0% | |
| GTCGATTAGGAACCATCCTA+AGG | + | chr3.3:47901726-47901745 | None:intergenic | 45.0% | |
| TAGGCTGCACATGATAGTAG+AGG | + | chr3.3:47901748-47901767 | None:intergenic | 45.0% | |
| TCGGCCTTTGAATGTTTGTG+AGG | + | chr3.3:47901940-47901959 | None:intergenic | 45.0% | |
| ! | GATTGCGAATGCAAAAGCGT+AGG | + | chr3.3:47901767-47901786 | None:intergenic | 45.0% |
| ! | GCGGTCTTGTCATGTGAATT+TGG | - | chr3.3:47901101-47901120 | MS.gene95383:intron | 45.0% |
| !! | CTTTTGGAGAAGCCCAATCA+TGG | - | chr3.3:47899628-47899647 | MS.gene95383:CDS | 45.0% |
| !! | GAAAATTATATATATTTATA+AGG | - | chr3.3:47900382-47900401 | MS.gene95383:intron | 5.0% |
| !!! | AATAAATAAATTTTTCTTTA+TGG | + | chr3.3:47900724-47900743 | None:intergenic | 5.0% |
| AGTCCAATTGGTGTGGCCAT+TGG | - | chr3.3:47901790-47901809 | MS.gene95383:intron | 50.0% | |
| ATGTATCCAACACCAGGACG+AGG | + | chr3.3:47899818-47899837 | None:intergenic | 50.0% | |
| CAAATTGCAGGGGCAGACAA+AGG | - | chr3.3:47901338-47901357 | MS.gene95383:intron | 50.0% | |
| GCAGACAAAGGAAGGAGCAA+CGG | - | chr3.3:47901350-47901369 | MS.gene95383:intron | 50.0% | |
| TCAGCACCACCACCATGATT+GGG | + | chr3.3:47899643-47899662 | None:intergenic | 50.0% | |
| TTCCACAACACAGGGTCATG+TGG | - | chr3.3:47901825-47901844 | MS.gene95383:intron | 50.0% | |
| TTGGAGAAGCCCAATCATGG+TGG | - | chr3.3:47899631-47899650 | MS.gene95383:CDS | 50.0% | |
| ! | CTTGCAGTGTCGTTGGGAAT+AGG | - | chr3.3:47901979-47901998 | MS.gene95383:CDS | 50.0% |
| !! | CCATGCGTCTGCTTTTGTCA+CGG | + | chr3.3:47901641-47901660 | None:intergenic | 50.0% |
| !! | TAGTGACCGGAGGGAGTATT+TGG | + | chr3.3:47900112-47900131 | None:intergenic | 50.0% |
| AGCAGAGATACTCCTCGTCC+TGG | - | chr3.3:47899803-47899822 | MS.gene95383:CDS | 55.0% | |
| CCGTGACAAAAGCAGACGCA+TGG | - | chr3.3:47901638-47901657 | MS.gene95383:intron | 55.0% | |
| CCTAAGGAGAGCAATGCCCA+TGG | + | chr3.3:47901710-47901729 | None:intergenic | 55.0% | |
| GAGAAGCCCAATCATGGTGG+TGG | - | chr3.3:47899634-47899653 | MS.gene95383:CDS | 55.0% | |
| GAGAGCAATGCCCATGGCAA+TGG | + | chr3.3:47901704-47901723 | None:intergenic | 55.0% | |
| GATACTCCTCGTCCTGGTGT+TGG | - | chr3.3:47899809-47899828 | MS.gene95383:CDS | 55.0% | |
| GCTCTGCCAAATACTCCCTC+CGG | - | chr3.3:47900103-47900122 | MS.gene95383:intron | 55.0% | |
| GTCAGCACCACCACCATGAT+TGG | + | chr3.3:47899644-47899663 | None:intergenic | 55.0% | |
| TTGCAGGGGCAGACAAAGGA+AGG | - | chr3.3:47901342-47901361 | MS.gene95383:intron | 55.0% | |
| ! | CCATGGGCATTGCTCTCCTT+AGG | - | chr3.3:47901707-47901726 | MS.gene95383:intron | 55.0% |
| ! | GGGCATTGCTCTCCTTAGGA+TGG | - | chr3.3:47901711-47901730 | MS.gene95383:intron | 55.0% |
| !! | GCGTTCATGTTGGCTTGTGC+TGG | - | chr3.3:47899565-47899584 | MS.gene95383:CDS | 55.0% |
| !! | GGTGCTGACGTTGAAGGTCA+AGG | - | chr3.3:47899655-47899674 | MS.gene95383:CDS | 55.0% |
| CACAGGGTCATGTGGCCGAT+TGG | - | chr3.3:47901833-47901852 | MS.gene95383:intron | 60.0% | |
| GGCCACATGACCCTGTGTTG+TGG | + | chr3.3:47901830-47901849 | None:intergenic | 60.0% | |
| !! | GGTGGTGGTGCTGACGTTGA+AGG | - | chr3.3:47899649-47899668 | MS.gene95383:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 47899502 | 47902035 | 47899502 | ID=MS.gene95383 |
| chr3.3 | mRNA | 47899502 | 47902035 | 47899502 | ID=MS.gene95383.t1;Parent=MS.gene95383 |
| chr3.3 | exon | 47901861 | 47902035 | 47901861 | ID=MS.gene95383.t1.exon1;Parent=MS.gene95383.t1 |
| chr3.3 | CDS | 47901861 | 47902035 | 47901861 | ID=cds.MS.gene95383.t1;Parent=MS.gene95383.t1 |
| chr3.3 | exon | 47900140 | 47900189 | 47900140 | ID=MS.gene95383.t1.exon2;Parent=MS.gene95383.t1 |
| chr3.3 | CDS | 47900140 | 47900189 | 47900140 | ID=cds.MS.gene95383.t1;Parent=MS.gene95383.t1 |
| chr3.3 | exon | 47899502 | 47900032 | 47899502 | ID=MS.gene95383.t1.exon3;Parent=MS.gene95383.t1 |
| chr3.3 | CDS | 47899502 | 47900032 | 47899502 | ID=cds.MS.gene95383.t1;Parent=MS.gene95383.t1 |
| Gene Sequence |
| Protein sequence |
